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Domain combinations for Saposin superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Saposin domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   40 22
Pan_troglodytes_76_2.1.4   (Chimpanzee)   11 5
Gorilla_gorilla_76_3.1   (Western gorilla)   22 9
Pongo_abelii_76_2   (Sumatran orangutan)   11 6
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   14 6
Papio_anubis_76   (Olive baboon)   15 7
Macaca_mulatta_76_1   (Rhesus monkey)   27 11
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   30 14
Otolemur_garnettii_76_3   (Small-eared galago)   13 5
Microcebus_murinus_76_1   (Gray mouse lemur)   10 5
Rattus_norvegicus_76_5.0   (Norway rat)   12 5
Mus_musculus_76_38   (House mouse)   29 13
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   7 3
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   12 4
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   13 5
Cavia_porcellus_76_3   (Domestic guinea pig)   15 6
Oryctolagus_cuniculus_76_2   (Rabbit)   13 5
Ochotona_princeps_76   (American pika)   8 3
Tupaia_belangeri_76   (Northern tree shrew)   8 4
Sus_scrofa_76_10.2   (Pig)   17 7
Bos_taurus_76_3.1   (Cattle)   19 9
Ovis_aries_76_3.1   (Sheep)   11 7
Vicugna_pacos_76_1   (Alpaca)   1 1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   9 4
Mustela_putorius_furo_76_1.0   (Domestic ferret)   10 5
Ailuropoda_melanoleuca_76_1   (Giant panda)   8 3
Canis_familiaris_76_3.1   (Dog)   11 6
Felis_catus_76_6.2   (Domestic cat)   9 4
Equus_caballus_76_2   (Horse)   13 6
Myotis_lucifugus_76_2.0   (Little brown bat)   9 5
Pteropus_vampyrus_76_1   (Large flying fox)   10 6
Sorex_araneus_76_1   (European shrew)   7 3
Erinaceus_europaeus_76   (Western European hedgehog)   4 2
Procavia_capensis_76_1   (Cape rock hyrax)   7 3
Loxodonta_africana_76_3   (African savanna elephant)   19 8
Echinops_telfairi_76   (Small Madagascar hedgehog)   8 4
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   12 6
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   6 4
Macropus_eugenii_76_1.0   (Tammar wallaby)   7 3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   7 3
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   12 5
Ornithorhynchus_anatinus_76_5   (Platypus)   9 5
Saccoglossus_kowalevskii_v3.0 77 14
Petromyzon_marinus_76_7.0   (Sea lamprey)   2 1
Meleagris_gallopavo_76_2   (Turkey)   7 4
Gallus_gallus_76_4   (Chicken)   8 4
Anas_platyrhynchos_76_1.0   (Mallard)   7 3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   8 4
Ficedula_albicollis_76_1.0   (Collared flycatcher)   8 4
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   9 4
Anolis_carolinensis_76_2.0   (Green anole)   12 4
Xenopus_laevis_   (African clawed frog)   34 10
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   14 5
Latimeria_chalumnae_76_1   (Coelacanth)   16 5
Lepisosteus_oculatus_76   (Spotted gar)   12 4
Gadus_morhua_76_1   (Atlantic cod)   8 4
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   14 6
Takifugu_rubripes_76_4   (Torafugu)   13 7
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   15 6
Oryzias_latipes_76_1   (Japanese medaka)   14 6
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   10 5
Poecilia_formosa_76   (Amazon molly)   11 5
Oreochromis_niloticus_76_1.0   (Nile tilapia)   14 6
Astyanax_mexicanus_76   (Mexican tetra)   14 6
Danio_rerio_76_9   (Zebrafish)   25 12
Oikopleura_dioica 6 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   20 9
Ciona_intestinalis_76   (Vase tunicate)   10 5
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   15 5
Adineta_vaga 90 29
Octopus_bimaculoides_280 6 2
Crassostrea_gigas_22   (Pacific oyster)   15 2
Lottia_gigantea_   (Owl limpet)   48 25
Helobdella_robusta_ 7 2
Capitella_sp._I_ 11 7
Danaus_plexippus_OGS1.0   (Monarch butterfly)   9 3
Heliconius_melpomene_   (Postman butterfly)   8 2
Bombyx_mori_   (Domestic silkworm)   7 2
Nasonia_vitripennis_   (Jewel wasp)   10 3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   8 6
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   7 2
Linepithema_humile_v1.1   (Argentine ant)   8 3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   8 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   9 3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   8 3
Atta_cephalotes_v1.1 9 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   8 3
Lucilia_cuprina   (Australian sheep blowfly)   9 3
Drosophila_grimshawi_1.3 8 2
Drosophila_willistoni_1.3 8 2
Drosophila_pseudoobscura_2.13 8 2
Drosophila_persimilis_1.3 8 2
Drosophila_suzukii 9 2
Drosophila_yakuba_1.3 8 2
Drosophila_simulans_1.3 8 2
Drosophila_sechellia_1.3 7 1
Drosophila_melanogaster_76_5   (Fruit fly)   17 5
Drosophila_erecta_1.3 8 2
Drosophila_ananassae_1.3 8 2
Drosophila_virilis_1.2 17 4
Drosophila_mojavensis_1.3 11 3
Megaselia_scalaris_22 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   15 8
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   11 4
Anopheles_darlingi_22   (American malaria mosquito)   2 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   9 3
Tribolium_castaneum_3.0   (Red flour beetle)   14 8
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   11 5
Acyrthosiphon_pisum_   (Pea aphid)   14 3
Rhodnius_prolixus_22 9 2
Daphnia_pulex_   (Common water flea)   8 2
Strigamia_maritima_22 4 4
Sarcoptes_scabiei 6 2
Tetranychus_urticae_   (Two-spotted spider mite)   10 2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   11 3
Pristionchus_pacificus_ 27 23
Meloidogyne_incognita_   (Southern root-knot nematode)   4 4
Meloidogyne_hapla_ 2 2
Onchocerca_volvulus_22 5 4
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   7 6
Caenorhabditis_japonica_ 34 29
Caenorhabditis_brenneri_ 42 34
Caenorhabditis_remanei_ 36 31
Caenorhabditis_elegans_76_235   (Roundworm)   40 34
Caenorhabditis_briggsae_2 27 22
Trichinella_spiralis_22 7 4
Hymenolepis_microstoma_ 3 1
Echinococcus_multilocularis_ 6 2
Echinococcus_granulosus_ 6 1
Taenia_solium_   (Pork tapeworm)   5 1
Schistosoma_mansoni_ 21 18
Mnemiopsis_leidyi   (Sea walnut)   24 12
Thelohanellus_kitauei 1 1
Acropora_digitifera_v1.0 5 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   12 5
Hydra_vulgaris 14 5
Amphimedon_queenslandica 28 11
Trichoplax_adhaerens_ 24 9
Proterospongia_sp._ATCC_50818_ 4 3
Monosiga_brevicollis_ 2 2
Sphaeroforma_arctica_JP610_ 2 1
Capsaspora_owczarzaki_ATCC_30864_ 10 6
Conidiobolus_coronatus_NRRL28638_v1.0 3 3
Mortierella_verticillata_NRRL_6337_ 4 4
Aspergillus_versicolor_v1.0 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Dictyostelium_discoideum 41 23
Dictyostelium_purpureum_ 43 24
Entamoeba_dispar_1.2 5 5
Entamoeba_invadens_1.2 3 3
Entamoeba_histolytica_1 8 8
Selaginella_moellendorffii_ 6 6
Pinus_taeda   (Loblolly pine)   16 10
Picea_abies   (Norway spruce)   6 4
Eucalyptus_grandis_v201   (Rose gum)   18 15
Theobroma_cacao_B97-61/B2_v1   (Cacao)   9 8
Gossypium_raimondii_v221 39 33
Citrus_clementina_v165 17 13
Citrus_sinensis_v154   (Sweet orange)   30 29
Thellungiella_halophila_v173 12 8
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   12 10
Capsella_rubella_v183 10 7
Arabidopsis_lyrata_   (Lyrate rockcress)   8 6
Arabidopsis_thaliana_10   (Thale cress)   9 7
Carica_papaya_   (Papaya)   7 6
Medicago_truncatula_   (Barrel medic)   23 20
Phaseolus_vulgaris_v186   (French bean)   19 15
Glycine_max_v109   (Soybean)   42 31
Cucumis_sativus_v122   (Cucumber)   14 12
Fragaria_vesca_   (Wild strawberry)   7 6
Prunus_persica_v139   (Peach)   9 7
Linum_usitatissimum_v200   (Flax)   16 12
Manihot_esculenta_v147   (Cassava)   16 14
Populus_trichocarpa_v156   (Black cottonwood)   13 10
Vitis_vinifera_   (Wine grape)   9 7
Mimulus_guttatus_v140   (Spotted monkey flower)   7 6
Solanum_lycopersicum_v.2.3   (Tomato)   10 8
Solanum_tuberosum_   (Potato)   11 10
Actinidia_chinensis_Hongyang_ 14 12
Aquilegia_coerulea_v195 25 21
Triticum_urartu_22 12 8
Triticum_aestivum_22   (Bread wheat)   39 29
Aegilops_tauschii_22 14 10
Brachypodium_distachyon_   (Stiff brome)   29 20
Oryza_barthii_22   (African wild rice)   22 16
Oryza_meridionalis_22 17 12
Oryza_glumaepatula_22 17 12
Oryza_glaberrima   (African rice)   11 8
Oryza_punctata_22 16 12
Oryza_nivara_22 22 17
Oryza_brachyantha_22   (Malo sina)   10 7
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   25 19
Oryza_sativa_v193   (Rice)   25 19
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   14 11
Panicum_virgatum_v202   (Switchgrass)   33 26
Setaria_italica_v164   (Foxtail millet)   35 23
Zea_mays_subsp._mays_   (Maize)   34 27
Zea_mays_v181   (Maize)   52 42
Sorghum_bicolor_   (Sorghum)   8 6
Musa_balbisiana   (Balbis banana)   21 16
Musa_acuminata_22   (Wild Malaysian banana)   24 16
Amborella_trichopoda_22 6 4
Physcomitrella_patens 7 5
Coccomyxa_subellipsoidea_sp._C-169_v2 4 2
Asterochloris_sp._Cgr/DA1pho_v1.0 3 2
Chlorella_variabilis_sp._NC64A_ 4 2
Chlorella_vulgaris_ 4 2
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 4 2
Chlamydomonas_reinhardtii_4.0 4 2
Ostreococcus_sp._RCC809_ 2 2
Ostreococcus_lucimarinus_CCE9901_ 2 2
Ostreococcus_tauri_ 2 2
Bathycoccus_prasinos_ 3 2
Micromonas_sp._RCC299_ 3 2
Micromonas_pusilla_CCMP1545_v3.0 3 2
Thecamonas_trahens_ATCC_50062_ 12 6
Bigelowiella_natans_CCMP2755_22 4 4
Trypanosoma_vivax_ 1 1
Trypanosoma_cruzi_strain_CL_Brener 1 1
Trypanosoma_congolense_2.4 1 1
Trypanosoma_brucei_gambiense_v4.1 1 1
Trypanosoma_brucei_TREU927_v4.1 1 1
Albugo_laibachii_22 6 1
Pythium_iwayamai_DAOM_BR242034_22 1 1
Pythium_arrhenomanes_ATCC_12531_22 2 1
Pythium_ultimum_v1.7-2 8 1
Pythium_irregulare_DAOM_BR486_22 4 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   8 1
Phytophthora_sojae_1.1 13 2
Phytophthora_infestans_T30-4_ 7 1
Phytophthora_capsici_ 5 2
Hyaloperonospora_arabidopsidis_22 10 2
Paramecium_tetraurelia_ 7 7
Tetrahymena_thermophila_SB210_1_ 7 7
Ichthyophthirius_multifiliis_strain_G5_ 2 2
Symbiodinium_minutum_clade_B1_v1.2 1 1
Naegleria_gruberi_ 10 5
Trichomonas_vaginalis_ 36 23
Guillardia_theta_CCMP2712_v1.0_ 3 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   14 6
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   16 4
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   16 4
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   9 9
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   34 28
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   8 7
Hordeum_vulgare_22   (Domesticated barley)   20 15
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   12 8
Trypanosoma_brucei_Lister_427_v4.1 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   14 6
Pan_troglodytes_69_2.1.4   (Chimpanzee)   11 5
Gorilla_gorilla_69_3.1   (Western gorilla)   14 6
Pongo_abelii_69_2   (Sumatran orangutan)   11 6
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   13 5
Macaca_mulatta_69_1   (Rhesus monkey)   11 5
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   20 8
Otolemur_garnettii_69_3   (Small-eared galago)   13 5
Microcebus_murinus_69_1   (Gray mouse lemur)   10 5
Rattus_norvegicus_69_3.4   (Norway rat)   8 4
Mus_musculus_69_38   (House mouse)   15 6
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   7 3
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   12 4
Cavia_porcellus_69_3   (Domestic guinea pig)   11 4
Oryctolagus_cuniculus_69_2   (Rabbit)   13 5
Ochotona_princeps_69   (American pika)   8 3
Tupaia_belangeri_69   (Northern tree shrew)   8 4
Sus_scrofa_69_10.2   (Pig)   12 5
Bos_taurus_69_3.1   (Cattle)   15 8
Vicugna_pacos_69_1   (Alpaca)   1 1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   9 4
Mustela_putorius_furo_69_1.0   (Domestic ferret)   10 5
Ailuropoda_melanoleuca_69_1   (Giant panda)   8 3
Canis_familiaris_69_3.1   (Dog)   11 6
Felis_catus_69   (Domestic cat)   9 5
Equus_caballus_69_2   (Horse)   13 6
Myotis_lucifugus_69_2.0   (Little brown bat)   9 5
Pteropus_vampyrus_69_1   (Large flying fox)   10 6
Sorex_araneus_69_1   (European shrew)   7 3
Erinaceus_europaeus_69   (Western European hedgehog)   4 2
Procavia_capensis_69_1   (Cape rock hyrax)   7 3
Loxodonta_africana_69_3   (African savanna elephant)   8 4
Echinops_telfairi_69   (Small Madagascar hedgehog)   8 4
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   7 3
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   6 4
Macropus_eugenii_69_1.0   (Tammar wallaby)   7 3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   7 3
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   12 5
Ornithorhynchus_anatinus_69_5   (Platypus)   9 5
Petromyzon_marinus_69_7.0   (Sea lamprey)   2 1
Meleagris_gallopavo_69_2   (Turkey)   6 3
Gallus_gallus_69_2   (Chicken)   11 4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   8 4
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   9 4
Anolis_carolinensis_69_2.0   (Green anole)   7 3
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   7 3
Latimeria_chalumnae_69_1   (Coelacanth)   8 3
Gadus_morhua_69_1   (Atlantic cod)   8 4
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   10 5
Takifugu_rubripes_69_4   (Torafugu)   6 3
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   11 5
Oryzias_latipes_69_1   (Japanese medaka)   7 3
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   10 5
Oreochromis_niloticus_69_1.0   (Nile tilapia)   10 5
Danio_rerio_69_9   (Zebrafish)   18 8
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   7 4
Ciona_intestinalis_69   (Vase tunicate)   9 4
Drosophila_melanogaster_69_5   (Fruit fly)   8 2
Caenorhabditis_elegans_69_215   (Roundworm)   34 29
Arabidopsis_thaliana_10   (Thale cress)   7 5

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   43 24
Homo_sapiens__(NCBI_version)   (Human)   29 13
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   12 5
Heliconius_numata__(Incomplete) 6 5
Loa_loa_v3.3_(Request)   (Eye worm)   4 4
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   6 5
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3 2
Picea_sitchensis__(Incomplete)   (Sitka spruce)   5 3
Lotus_japonicus__(Early_assembly) 9 7
Ricinus_communis__(Early_assembly)   (Castor bean)   7 6
Nicotiana_benthamiana_0.4.4_(Early_draft) 20 16
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   10 8
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   10 8
Phoenix_dactylifera__(Early_draft)   (Date palm)   13 10
Protozoadb_2010_08_(Protozoadb) 101 75
TargetDB__(Targets) 27 21
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 130 130
STRING_v9.0.5_(STRING) 919 509
NCBI_2017_08_genome 9072 4385
Uniprot_2018_03_genome 9114 4987
Protein_Data_Bank_(all_PDB_sequenc) 72 72
PDB_chains_(SCOP_1.75)_(PDB) 9 9

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