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Domain combinations for Ypt/Rab-GAP domain of gyp1p superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Ypt/Rab-GAP domain of gyp1p domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   322 214
Pan_troglodytes_76_2.1.4   (Chimpanzee)   87 48
Gorilla_gorilla_76_3.1   (Western gorilla)   135 80
Pongo_abelii_76_2   (Sumatran orangutan)   114 64
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   85 44
Papio_anubis_76   (Olive baboon)   96 52
Macaca_mulatta_76_1   (Rhesus monkey)   166 102
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   199 111
Otolemur_garnettii_76_3   (Small-eared galago)   77 40
Microcebus_murinus_76_1   (Gray mouse lemur)   58 32
Rattus_norvegicus_76_5.0   (Norway rat)   89 48
Mus_musculus_76_38   (House mouse)   165 88
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   63 37
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   77 43
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   73 39
Cavia_porcellus_76_3   (Domestic guinea pig)   78 41
Oryctolagus_cuniculus_76_2   (Rabbit)   104 56
Ochotona_princeps_76   (American pika)   74 44
Tupaia_belangeri_76   (Northern tree shrew)   61 35
Sus_scrofa_76_10.2   (Pig)   101 59
Bos_taurus_76_3.1   (Cattle)   82 44
Ovis_aries_76_3.1   (Sheep)   91 47
Vicugna_pacos_76_1   (Alpaca)   47 28
Tursiops_truncatus_76_1   (Bottlenose dolphin)   76 39
Mustela_putorius_furo_76_1.0   (Domestic ferret)   83 43
Ailuropoda_melanoleuca_76_1   (Giant panda)   92 50
Canis_familiaris_76_3.1   (Dog)   131 67
Felis_catus_76_6.2   (Domestic cat)   81 43
Equus_caballus_76_2   (Horse)   98 52
Myotis_lucifugus_76_2.0   (Little brown bat)   72 38
Pteropus_vampyrus_76_1   (Large flying fox)   74 39
Sorex_araneus_76_1   (European shrew)   45 27
Erinaceus_europaeus_76   (Western European hedgehog)   55 33
Procavia_capensis_76_1   (Cape rock hyrax)   68 39
Loxodonta_africana_76_3   (African savanna elephant)   114 62
Echinops_telfairi_76   (Small Madagascar hedgehog)   68 41
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   109 58
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   40 22
Macropus_eugenii_76_1.0   (Tammar wallaby)   64 37
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   89 50
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   87 45
Ornithorhynchus_anatinus_76_5   (Platypus)   65 38
Saccoglossus_kowalevskii_v3.0 78 45
Petromyzon_marinus_76_7.0   (Sea lamprey)   51 31
Meleagris_gallopavo_76_2   (Turkey)   79 43
Gallus_gallus_76_4   (Chicken)   79 41
Anas_platyrhynchos_76_1.0   (Mallard)   71 38
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   71 37
Ficedula_albicollis_76_1.0   (Collared flycatcher)   70 39
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   101 52
Anolis_carolinensis_76_2.0   (Green anole)   80 43
Xenopus_laevis_   (African clawed frog)   96 52
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   100 52
Latimeria_chalumnae_76_1   (Coelacanth)   86 48
Lepisosteus_oculatus_76   (Spotted gar)   105 55
Gadus_morhua_76_1   (Atlantic cod)   86 47
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   110 61
Takifugu_rubripes_76_4   (Torafugu)   239 131
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   116 64
Oryzias_latipes_76_1   (Japanese medaka)   101 56
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   85 47
Poecilia_formosa_76   (Amazon molly)   87 46
Oreochromis_niloticus_76_1.0   (Nile tilapia)   108 58
Astyanax_mexicanus_76   (Mexican tetra)   92 49
Danio_rerio_76_9   (Zebrafish)   145 79
Oikopleura_dioica 39 22
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   65 40
Ciona_intestinalis_76   (Vase tunicate)   45 28
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   68 45
Adineta_vaga 153 85
Octopus_bimaculoides_280 130 69
Crassostrea_gigas_22   (Pacific oyster)   52 31
Lottia_gigantea_   (Owl limpet)   52 29
Helobdella_robusta_ 55 30
Capitella_sp._I_ 64 37
Danaus_plexippus_OGS1.0   (Monarch butterfly)   46 25
Heliconius_melpomene_   (Postman butterfly)   38 21
Bombyx_mori_   (Domestic silkworm)   37 25
Nasonia_vitripennis_   (Jewel wasp)   35 20
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   49 28
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   38 22
Linepithema_humile_v1.1   (Argentine ant)   38 21
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   37 21
Solenopsis_invicta_v.2.2.3   (Red fire ant)   34 19
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   37 21
Atta_cephalotes_v1.1 38 21
Camponotus_floridanus_v3.3   (Florida carpenter ant)   38 21
Lucilia_cuprina   (Australian sheep blowfly)   38 21
Drosophila_grimshawi_1.3 44 25
Drosophila_willistoni_1.3 44 25
Drosophila_pseudoobscura_2.13 60 35
Drosophila_persimilis_1.3 64 44
Drosophila_suzukii 44 24
Drosophila_yakuba_1.3 45 26
Drosophila_simulans_1.3 40 23
Drosophila_sechellia_1.3 45 26
Drosophila_melanogaster_76_5   (Fruit fly)   90 53
Drosophila_erecta_1.3 45 25
Drosophila_ananassae_1.3 41 23
Drosophila_virilis_1.2 44 25
Drosophila_mojavensis_1.3 43 24
Megaselia_scalaris_22 24 16
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   46 25
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   46 27
Anopheles_darlingi_22   (American malaria mosquito)   35 21
Anopheles_gambiae_49_3j   (African malaria mosquito)   42 23
Tribolium_castaneum_3.0   (Red flour beetle)   43 23
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   44 23
Acyrthosiphon_pisum_   (Pea aphid)   39 22
Rhodnius_prolixus_22 29 19
Daphnia_pulex_   (Common water flea)   46 26
Strigamia_maritima_22 53 29
Sarcoptes_scabiei 31 20
Tetranychus_urticae_   (Two-spotted spider mite)   45 26
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   36 21
Pristionchus_pacificus_ 32 20
Meloidogyne_incognita_   (Southern root-knot nematode)   31 19
Meloidogyne_hapla_ 13 9
Onchocerca_volvulus_22 34 18
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   50 28
Caenorhabditis_japonica_ 38 20
Caenorhabditis_brenneri_ 41 21
Caenorhabditis_remanei_ 42 22
Caenorhabditis_elegans_76_235   (Roundworm)   80 41
Caenorhabditis_briggsae_2 38 20
Trichinella_spiralis_22 36 23
Hymenolepis_microstoma_ 34 18
Echinococcus_multilocularis_ 38 22
Echinococcus_granulosus_ 34 20
Taenia_solium_   (Pork tapeworm)   38 20
Schistosoma_mansoni_ 46 27
Mnemiopsis_leidyi   (Sea walnut)   43 24
Thelohanellus_kitauei 7 6
Acropora_digitifera_v1.0 42 29
Nematostella_vectensis_1.0   (Starlet sea anemone)   61 38
Hydra_vulgaris 47 29
Amphimedon_queenslandica 54 32
Trichoplax_adhaerens_ 52 26
Proterospongia_sp._ATCC_50818_ 44 26
Monosiga_brevicollis_ 36 21
Sphaeroforma_arctica_JP610_ 32 24
Capsaspora_owczarzaki_ATCC_30864_ 39 20
Conidiobolus_coronatus_NRRL28638_v1.0 29 14
Mortierella_verticillata_NRRL_6337_ 41 20
Phycomyces_blakesleeanus_ 62 32
Rhizopus_oryzae_RA_99-880_ 57 32
Mucor_circinelloides_ 58 30
Rhizomucor_miehei_CAU432_ 51 28
Malassezia_globosa_CBS_7966_ 42 24
Sporisorium_reilianum_22 26 13
Ustilago_maydis_ 27 13
Mixia_osmundae_IAM_14324_v1.0 26 13
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 24 12
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 18 10
Melampsora_laricis-populina_ 25 13
Rhodotorula_graminis_WP1_v1.0 23 12
Sporobolomyces_roseus_IAM_13481_ 16 8
Microbotryum_violaceum_22 27 13
Wallemia_sebi_v1.0 14 7
Sphaerobolus_stellatus_v1.0 26 13
Piloderma_croceum_F_1598_v1.0 23 12
Serpula_lacrymans_var._lacrymans_S7.9_ 22 12
Coniophora_puteana 24 12
Hydnomerulius_pinastri_v2.0 24 12
Paxillus_rubicundulus_Ve08.2h10_v1.0 24 12
Pisolithus_microcarpus_441_v1.0 30 15
Pisolithus_tinctorius_Marx_270_v1.0 28 14
Scleroderma_citrinum_Foug_A_v1.0 24 12
Coprinopsis_cinerea_okayama7_130_v3 22 11
Pleurotus_ostreatus_   (Oyster mushroom)   20 11
Amanita_thiersii_Skay4041_v1.0 24 12
Amanita_muscaria_Koide_v1.0   (Fly agaric)   36 24
Galerina_marginata_v1.0 24 12
Hebeloma_cylindrosporum_h7_v2.0 22 12
Laccaria_bicolor_S238N-H82_ 22 12
Agaricus_bisporus_var._bisporus_ 23 12
Schizophyllum_commune_ 21 11
Stereum_hirsutum_FP-91666_SS1__v1.0 23 12
Heterobasidion_annosum_ 19 10
Gloeophyllum_trabeumv1.0 22 11
Punctularia_strigosozonata_v1.0 24 12
Sebacina_vermifera_MAFF_305830_v1.0 23 13
Fomitiporia_mediterranea_v1.0 24 12
Tulasnella_calospora_AL13/4D_v1.0 23 12
Postia_placenta_ 31 17
Wolfiporia_cocos_MD-104_SS10__v1.0 20 10
Fomitopsis_pinicolav1.0 23 12
Fomitopsis_pinicola_FP-58527_SS1_v3.0 23 12
Phanerochaete_chrysosporium_RP-78_2.1 18 10
Dichomitus_squalens 24 12
Trametes_versicolor_v1.0 25 13
Tremella_mesenterica_   (Witches' butter)   24 12
Daldinia_eschscholzii_EC12_v1.0 24 12
Apiospora_montagnei_NRRL_25634_v1.0 24 12
Magnaporthe_poae_ATCC_64411_22 21 11
Magnaporthe_grisea_70-15_ 23 12
Podospora_anserina_ 24 12
Sporotrichum_thermophile_ATCC_42464_ 24 13
Thielavia_terrestris_NRRL_8126_ 25 12
Chaetomium_globosum_CBS_148.51_ 23 12
Neurospora_tetrasperma_ 25 12
Neurospora_discreta_FGSC_8579_ 25 12
Neurospora_crassa_OR74A_ 25 12
Cryphonectria_parasitica_   (Chestnut blight fungus)   25 12
Verticillium_albo-atrum_VaMs.102_ 20 11
Verticillium_dahliae_VdLs.17_ 23 12
Acremonium_alcalophilumv_1.0 24 12
Glomerella_graminicola_22 24 12
Fusarium_graminearum_ 23 12
Nectria_haematococca_mpVI_ 25 12
Fusarium_oxysporum_f._sp._lycopersici_4286_ 22 11
Fusarium_verticillioides_7600_ 23 12
Trichoderma_asperellum_CBS_433.97_v1.0 25 12
Trichoderma_atroviride_ 25 12
Trichoderma_citrinoviride_v1.0 24 12
Trichoderma_reesei_1.2 25 12
Trichoderma_virens_Gv29-8_ 25 12
Trichoderma_longibrachiatum_ATCC_18648_v1.0 23 12
Trichoderma_harzianum_CBS_226.95_v1.0 25 12
Amorphotheca_resinae_v1.0   (Creosote fungus)   25 12
Botrytis_cinerea_B05.10_ 18 10
Sclerotinia_sclerotiorum_ 23 12
Blumeria_graminis_22 25 12
Didymella_exigua_CBS_183.55_v1.0 24 12
Leptosphaeria_maculans_22 23 12
Setosphaeria_turcica_v1.0 24 12
Cochliobolus_miyabeanus_ATCC_44560_v1.0 24 12
Cochliobolus_victoriae_FI3_v1.0 24 12
Cochliobolus_carbonum_26-R-13_v1.0 24 12
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   22 11
Alternaria_brassicicola_ 24 12
Cochliobolus_lunatus_m118_v2.0 22 11
Pyrenophora_teres_f._teres_22 24 12
Pyrenophora_tritici-repentis_ 23 12
Stagonospora_nodorum_ 22 11
Mycosphaerella_graminicola_IPO323_ 25 12
Zasmidium_cellare_ATCC_36951_v1.0 24 12
Dothistroma_septosporum 24 12
Septoria_musiva_v1.0 24 12
Mycosphaerella_fijiensis_CIRAD86_ 22 11
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 25 12
Paracoccidioides_brasiliensis_Pb18_ 23 12
Coccidioides_posadasii_RMSCC_3488_ 23 12
Coccidioides_immitis_RS_ 23 12
Ajellomyces_dermatitidis_SLH14081_ 24 12
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 21 12
Microsporum_canis_CBS_113480_ 23 12
Trichophyton_equinum_CBS_127.97_ 23 12
Trichophyton_verrucosum_HKI_0517_ 23 13
Arthroderma_benhamiae_CBS_112371_ 21 12
Trichophyton_tonsurans_CBS_112818_ 23 12
Trichophyton_rubrum_CBS_118892_ 23 12
Uncinocarpus_reesii_1704_ 23 12
Aspergillus_zonatus_v1.0 24 12
Penicillium_chrysogenum_Wisconsin_54-1255_ 22 11
Penicillium_chrysogenum_v1.0 24 12
Aspergillus_acidus_v1.0 24 12
Aspergillus_fumigatus_Af293 24 12
Aspergillus_brasiliensis_v1.0 24 12
Aspergillus_nidulans_FGSC_A4_ 24 12
Aspergillus_sydowii_v1.0 24 12
Aspergillus_versicolor_v1.0 24 12
Aspergillus_glaucus 22 11
Aspergillus_carbonarius_ITEM_5010_ 25 12
Neosartorya_fischeri_NRRL_181_ 24 12
Aspergillus_terreus_NIH2624_ 24 12
Aspergillus_tubingensis_v1.0 24 12
Aspergillus_wentii_v1.0 24 12
Aspergillus_oryzae_RIB40_ 24 12
Aspergillus_niger_22 24 12
Aspergillus_niger_ATCC_1015_ 22 11
Aspergillus_flavus_NRRL3357_ 24 12
Aspergillus_clavatus_NRRL_1_ 24 12
Penicillium_marneffei_ATCC_18224_ 26 13
Tuber_melanosporum_Mel28_22 25 13
Tuber_melanosporum_Vittad_   (Perigord truffle)   25 13
Hansenula_polymorpha_v2.0 19 10
Dekkera_bruxellensis_CBS_2499_v2.0 17 10
Pichia_membranifaciensv1.0 18 10
Candida_tanzawaensis_NRRL_Y-17324__v1.0 22 12
Candida_dubliniensis_CD36_ 21 12
Candida_tropicalis_MYA-3404_ 21 12
Candida_parapsilosis_ 20 11
Candida_albicans_SC5314 21 12
Lodderomyces_elongisporus_NRRL_YB-4239_ 18 10
Babjeviella_inositovora_NRRL_Y-12698_v1.0 17 9
Pichia_stipitis_CBS_6054_ 23 12
Candida_guilliermondii_ATCC_6260_ 21 12
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 22 12
Debaromyces_hansenii 23 13
Wickerhamomyces_anomalus 20 11
Pichia_pastoris_GS115_ 19 10
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 10 5
Yarrowia_lipolytica_CLIB122 22 12
Candida_lusitaniae_ATCC_42720_ 22 12
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 20 11
Vanderwaltozyma_polyspora_DSM_70294_ 18 9
Candida_glabrata_CBS138 16 10
Kluyveromyces_thermotolerans_CBS_6340 16 9
Lachancea_kluyveri_ 16 9
Kluyveromyces_waltii 16 9
Ashbya_gossypii_ATCC_10895_ 15 8
Zygosaccharomyces_rouxii_ 18 9
Saccharomyces_mikatae_MIT 20 11
Saccharomyces_paradoxus_MIT 20 11
Saccharomyces_cerevisiae_76   (Baker's yeast)   20 11
Saccharomyces_bayanus_MIT 20 11
Kluyveromyces_lactis 16 9
Schizosaccharomyces_cryophilus_OY26_22 25 13
Schizosaccharomyces_octosporus_yFS286_ 25 13
Schizosaccharomyces_japonicus_yFS275_ 26 13
Schizosaccharomyces_pombe   (Fission yeast)   25 13
Catenaria_anguillulae_PL171_v1.0 28 15
Allomyces_macrogynus_ATCC_38327_ 68 34
Spizellomyces_punctatus_DAOM_BR117_ 28 17
Dictyostelium_discoideum 59 30
Dictyostelium_purpureum_ 55 30
Entamoeba_dispar_1.2 81 47
Entamoeba_invadens_1.2 99 55
Entamoeba_histolytica_1 84 47
Selaginella_moellendorffii_ 44 22
Pinus_taeda   (Loblolly pine)   66 39
Picea_abies   (Norway spruce)   23 14
Eucalyptus_grandis_v201   (Rose gum)   45 23
Theobroma_cacao_B97-61/B2_v1   (Cacao)   28 14
Gossypium_raimondii_v221 178 97
Citrus_clementina_v165 55 28
Citrus_sinensis_v154   (Sweet orange)   85 52
Thellungiella_halophila_v173 57 28
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   65 36
Capsella_rubella_v183 48 24
Arabidopsis_lyrata_   (Lyrate rockcress)   48 24
Arabidopsis_thaliana_10   (Thale cress)   79 40
Carica_papaya_   (Papaya)   29 15
Medicago_truncatula_   (Barrel medic)   51 29
Phaseolus_vulgaris_v186   (French bean)   47 26
Glycine_max_v109   (Soybean)   76 39
Cucumis_sativus_v122   (Cucumber)   45 25
Fragaria_vesca_   (Wild strawberry)   28 14
Malus_domestica_v196   (Apple)   55 32
Prunus_persica_v139   (Peach)   32 16
Linum_usitatissimum_v200   (Flax)   60 32
Manihot_esculenta_v147   (Cassava)   50 26
Populus_trichocarpa_v156   (Black cottonwood)   62 34
Vitis_vinifera_   (Wine grape)   31 18
Mimulus_guttatus_v140   (Spotted monkey flower)   41 21
Solanum_lycopersicum_v.2.3   (Tomato)   43 23
Solanum_tuberosum_   (Potato)   62 37
Actinidia_chinensis_Hongyang_ 52 31
Aquilegia_coerulea_v195 73 41
Triticum_urartu_22 38 20
Triticum_aestivum_22   (Bread wheat)   111 62
Aegilops_tauschii_22 31 16
Brachypodium_distachyon_   (Stiff brome)   50 26
Oryza_barthii_22   (African wild rice)   50 25
Oryza_meridionalis_22 55 29
Oryza_glumaepatula_22 51 26
Oryza_glaberrima   (African rice)   30 15
Oryza_punctata_22 66 36
Oryza_nivara_22 50 25
Oryza_brachyantha_22   (Malo sina)   35 18
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   61 34
Oryza_sativa_v193   (Rice)   61 34
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   53 29
Panicum_virgatum_v202   (Switchgrass)   94 54
Setaria_italica_v164   (Foxtail millet)   48 26
Zea_mays_subsp._mays_   (Maize)   82 48
Zea_mays_v181   (Maize)   84 49
Sorghum_bicolor_   (Sorghum)   39 21
Musa_balbisiana   (Balbis banana)   52 30
Musa_acuminata_22   (Wild Malaysian banana)   55 32
Amborella_trichopoda_22 23 12
Physcomitrella_patens 33 17
Coccomyxa_subellipsoidea_sp._C-169_v2 18 9
Asterochloris_sp._Cgr/DA1pho_v1.0 19 11
Chlorella_variabilis_sp._NC64A_ 14 9
Chlorella_vulgaris_ 20 11
Volvox_carteri_f._nagariensis_ 26 14
Volvox_carteri_v199 22 12
Chlamydomonas_reinhardtii_4.0 24 14
Ostreococcus_sp._RCC809_ 16 9
Ostreococcus_lucimarinus_CCE9901_ 15 8
Ostreococcus_tauri_ 11 6
Bathycoccus_prasinos_ 14 8
Micromonas_sp._RCC299_ 17 9
Micromonas_pusilla_CCMP1545_v3.0 15 9
Cyanidioschyzon_merolae_strain_10D_22 13 7
Cyanidioschyzon_merolae 13 7
Porphyridium_purpureum_02_2012 23 12
Thecamonas_trahens_ATCC_50062_ 47 27
Bigelowiella_natans_CCMP2755_22 69 44
Giardia_lamblia_2.3 6 4
Cyanophora_paradoxa_ 23 15
Leishmania_mexicana_2.4 28 16
Leishmania_major_strain_Friedlin_ 28 16
Leishmania_infantum_JPCM5_2.4 28 16
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 26 15
Trypanosoma_vivax_ 23 13
Trypanosoma_cruzi_strain_CL_Brener 30 17
Trypanosoma_congolense_2.4 29 17
Trypanosoma_brucei_gambiense_v4.1 25 14
Trypanosoma_brucei_TREU927_v4.1 25 14
Ectocarpus_siliculosus 37 21
Aureococcus_anophagefferens_ 12 7
Albugo_laibachii_22 45 24
Pythium_iwayamai_DAOM_BR242034_22 55 29
Pythium_arrhenomanes_ATCC_12531_22 49 27
Pythium_ultimum_v1.7-2 53 31
Pythium_aphanidermatum_DAOM_BR444_22 45 27
Pythium_irregulare_DAOM_BR486_22 52 28
Pythium_vexans_DAOM_BR484_22 54 28
Phytophthora_ramorum_1.1   (Sudden oak death agent)   39 22
Phytophthora_sojae_1.1 45 26
Phytophthora_infestans_T30-4_ 48 28
Phytophthora_capsici_ 34 20
Hyaloperonospora_arabidopsidis_22 30 15
Phaeodactylum_tricornutumCCAP_1055/1 16 10
Fragilariopsis_cylindrus 16 8
Thalassiosira_pseudonana_CCMP1335 15 8
Perkinsus_marinus_ATCC_50983_ 40 22
Paramecium_tetraurelia_ 194 108
Tetrahymena_thermophila_SB210_1_ 83 51
Ichthyophthirius_multifiliis_strain_G5_ 30 21
Cryptosporidium_hominis 21 11
Cryptosporidium_muris 21 11
Cryptosporidium_parvum_Iowa_II 21 11
Neospora_caninum 32 17
Toxoplasma_gondii_VEG 31 17
Toxoplasma_gondii_ME49 31 17
Toxoplasma_gondii_GT1 30 16
Babesia_bovis_T2Bo_ 32 18
Theileria_parva__ 11 8
Theileria_annulata 14 8
Plasmodium_falciparum_3D7_ 21 13
Plasmodium_vivax_SaI-1_7.0 23 13
Plasmodium_knowlesi_strain_H_ 23 13
Plasmodium_yoelii_ssp._yoelii_1_ 20 13
Plasmodium_chabaudi_ 23 13
Plasmodium_berghei_ANKA_ 23 13
Symbiodinium_minutum_clade_B1_v1.2 88 57
Naegleria_gruberi_ 26 14
Trichomonas_vaginalis_ 117 66
Guillardia_theta_CCMP2712_v1.0_ 47 26
Emiliania_huxleyi_CCMP1516_ 37 23

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   137 74
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   75 44
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   51 28
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   43 23
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   56 29
Cryptococcus_neoformans_var._grubii_H99_ 25 13
Cryptococcus_neoformans_B-3501A_ 27 13
Cryptococcus_neoformans_JEC21_ 22 11
Paracoccidioides_brasiliensis_Pb01_ 23 12
Paracoccidioides_brasiliensis_Pb03_ 24 12
Coccidioides_posadasii_str._Silveira_ 22 12
Coccidioides_immitis_RMSCC_3703_ 18 12
Coccidioides_immitis_RMSCC_2394_ 21 12
Coccidioides_immitis_H538.4_ 22 12
Ajellomyces_dermatitidis_ER-3_ 24 12
Histoplasma_capsulatum_H143 23 12
Histoplasma_capsulatum_H88 23 12
Histoplasma_capsulatum_G186AR 25 13
Aspergillus_fumigatus_A1163_ 24 12
Candida_albicans_WO-1_ 19 11
Saccharomyces_cerevisiae_UC5 20 11
Saccharomyces_cerevisiae_PW5 17 9
Saccharomyces_cerevisiae_FL100 8 4
Saccharomyces_cerevisiae_CLIB324 9 5
Saccharomyces_cerevisiae_CBS7960 18 10
Saccharomyces_cerevisiae_YJM269 14 8
Saccharomyces_cerevisiae_T7 20 11
Saccharomyces_cerevisiae_FostersB 16 10
Saccharomyces_cerevisiae_FostersO 17 11
Saccharomyces_cerevisiae_VL3 18 10
Saccharomyces_cerevisiae_Vin13 16 9
Saccharomyces_cerevisiae_LalvinQA23 20 11
Saccharomyces_cerevisiae_AWRI796 18 11
Saccharomyces_cerevisiae_Sigma1278b 20 11
Saccharomyces_cerevisiae_W303 20 11
Saccharomyces_cerevisiae_JAY291 20 11
Saccharomyces_cerevisiae_AWRI1631 12 7
Saccharomyces_cerevisiae_YPS163 4 2
Saccharomyces_cerevisiae_M22 2 1
Saccharomyces_cerevisiae_T73 5 3
Saccharomyces_cerevisiae_CLIB215 11 6
Saccharomyces_cerevisiae_Y10 2 1
Saccharomyces_cerevisiae_YJM789_ 20 11
Saccharomyces_cerevisiae_YJM789 20 11
Saccharomyces_cerevisiae_RM11-1a 20 11
Saccharomyces_cerevisiae_RM11-1a_ 20 11
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   20 11
Schizosaccharomyces_pombe_972h-_ 25 13
Batrachochytrium_dendrobatidis_JEL423_ 35 20
Batrachochytrium_dendrobatidis_JAM81_ 37 20
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   28 14
Hordeum_vulgare_22   (Domesticated barley)   84 54
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   39 20
Trypanosoma_brucei_Lister_427_v4.1 25 14
Neospora_caninum_Nc-Liverpool_6.2 32 17
Plasmodium_falciparum_HB3_ 18 11
Plasmodium_falciparum_Dd2_ 10 8

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   98 57
Pan_troglodytes_69_2.1.4   (Chimpanzee)   83 45
Gorilla_gorilla_69_3.1   (Western gorilla)   87 50
Pongo_abelii_69_2   (Sumatran orangutan)   103 58
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   81 42
Macaca_mulatta_69_1   (Rhesus monkey)   97 54
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   85 47
Otolemur_garnettii_69_3   (Small-eared galago)   77 40
Microcebus_murinus_69_1   (Gray mouse lemur)   58 32
Rattus_norvegicus_69_3.4   (Norway rat)   71 39
Mus_musculus_69_38   (House mouse)   80 41
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   63 37
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   70 39
Cavia_porcellus_69_3   (Domestic guinea pig)   76 40
Oryctolagus_cuniculus_69_2   (Rabbit)   97 53
Ochotona_princeps_69   (American pika)   74 44
Tupaia_belangeri_69   (Northern tree shrew)   61 35
Sus_scrofa_69_10.2   (Pig)   82 48
Bos_taurus_69_3.1   (Cattle)   75 39
Vicugna_pacos_69_1   (Alpaca)   47 28
Tursiops_truncatus_69_1   (Bottlenose dolphin)   76 39
Mustela_putorius_furo_69_1.0   (Domestic ferret)   83 43
Ailuropoda_melanoleuca_69_1   (Giant panda)   77 41
Canis_familiaris_69_3.1   (Dog)   97 50
Felis_catus_69   (Domestic cat)   55 32
Equus_caballus_69_2   (Horse)   79 41
Myotis_lucifugus_69_2.0   (Little brown bat)   70 37
Pteropus_vampyrus_69_1   (Large flying fox)   74 39
Sorex_araneus_69_1   (European shrew)   45 27
Erinaceus_europaeus_69   (Western European hedgehog)   55 33
Procavia_capensis_69_1   (Cape rock hyrax)   68 39
Loxodonta_africana_69_3   (African savanna elephant)   77 41
Echinops_telfairi_69   (Small Madagascar hedgehog)   68 41
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   60 36
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   40 22
Macropus_eugenii_69_1.0   (Tammar wallaby)   64 37
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   71 39
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   83 43
Ornithorhynchus_anatinus_69_5   (Platypus)   59 35
Petromyzon_marinus_69_7.0   (Sea lamprey)   39 24
Meleagris_gallopavo_69_2   (Turkey)   73 40
Gallus_gallus_69_2   (Chicken)   71 37
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   70 36
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   76 39
Anolis_carolinensis_69_2.0   (Green anole)   79 42
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   78 40
Latimeria_chalumnae_69_1   (Coelacanth)   74 41
Gadus_morhua_69_1   (Atlantic cod)   86 47
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   85 48
Takifugu_rubripes_69_4   (Torafugu)   81 45
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   88 48
Oryzias_latipes_69_1   (Japanese medaka)   78 43
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   85 47
Oreochromis_niloticus_69_1.0   (Nile tilapia)   79 42
Danio_rerio_69_9   (Zebrafish)   93 50
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   36 22
Ciona_intestinalis_69   (Vase tunicate)   40 25
Drosophila_melanogaster_69_5   (Fruit fly)   43 24
Caenorhabditis_elegans_69_215   (Roundworm)   40 21
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   20 11
Arabidopsis_thaliana_10   (Thale cress)   46 23

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   321 207
Homo_sapiens__(NCBI_version)   (Human)   141 79
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   78 40
Heliconius_numata__(Incomplete) 5 5
Loa_loa_v3.3_(Request)   (Eye worm)   36 19
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   32 24
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   27 16
Moniliophthora_perniciosa_FA553__(Genome_survey) 8 7
Encephalitozoon_intestinalis__(endoparasite) 7 4
Encephalitozoon_cuniculi_(endoparasite) 7 4
Picea_sitchensis__(Incomplete)   (Sitka spruce)   3 2
Lotus_japonicus__(Early_assembly) 24 15
Malus_x_domestica_(Duplicate)   (Apple)   55 32
Ricinus_communis__(Early_assembly)   (Castor bean)   30 15
Nicotiana_benthamiana_0.4.4_(Early_draft) 74 40
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   43 23
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   43 23
Phoenix_dactylifera__(Early_draft)   (Date palm)   32 20
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 84 84
Protozoadb_2010_08_(Protozoadb) 1158 658
STRING_v9.0.5_(STRING) 5100 2791
PDB_chains_(SCOP_1.75)_(PDB) 4 2
Uniprot_2018_03_genome 62068 34120
NCBI_2017_08_genome 66896 35953
TargetDB__(Targets) 142 88
Protein_Data_Bank_(all_PDB_sequenc) 70 36

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