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Domain combinations for Retrovirus capsid protein, N-terminal core domain superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Retrovirus capsid protein, N-terminal core domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Gorilla_gorilla_76_3.1   (Western gorilla)   1 1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1 1
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   30 30
Cavia_porcellus_76_3   (Domestic guinea pig)   11 11
Oryctolagus_cuniculus_76_2   (Rabbit)   2 2
Sus_scrofa_76_10.2   (Pig)   16 16
Ovis_aries_76_3.1   (Sheep)   53 53
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2 2
Felis_catus_76_6.2   (Domestic cat)   73 73
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   16 16
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   32 32
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   103 103
Ornithorhynchus_anatinus_76_5   (Platypus)   1 1
Gallus_gallus_76_4   (Chicken)   4 4
Anas_platyrhynchos_76_1.0   (Mallard)   1 1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1 1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2 2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2 2
Anolis_carolinensis_76_2.0   (Green anole)   16 16
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1 1
Trypanosoma_congolense_2.4 4 4

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Longest transcript per gene
Genome     Number   Proteins
Gorilla_gorilla_69_3.1   (Western gorilla)   1 1
Cavia_porcellus_69_3   (Domestic guinea pig)   11 11
Sus_scrofa_69_10.2   (Pig)   16 16
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2 2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   30 30
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   103 103
Ornithorhynchus_anatinus_69_5   (Platypus)   1 1
Gallus_gallus_69_2   (Chicken)   1 1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1 1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   2 2
Anolis_carolinensis_69_2.0   (Green anole)   3 3

Others
Genome     Number   Proteins
Protozoadb_2010_08_(Protozoadb) 1 1
UniProt__viral_sequences_(Viral) 32297 32292
Uniprot_2018_03_genome 71776 71770
PDB_chains_(SCOP_1.75)_(PDB) 19 19
STRING_v9.0.5_(STRING) 54 54
NCBI_viral_sequences_(Viral) 58 58
NCBI_2017_08_genome 1881 1863
Protein_Data_Bank_(all_PDB_sequenc) 3127 3127
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 5884 5884

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