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Domain combinations for DEATH domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a DEATH domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   495 454
Pan_troglodytes_76_2.1.4   (Chimpanzee)   95 87
Gorilla_gorilla_76_3.1   (Western gorilla)   118 111
Pongo_abelii_76_2   (Sumatran orangutan)   85 77
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   92 83
Papio_anubis_76   (Olive baboon)   99 91
Macaca_mulatta_76_1   (Rhesus monkey)   190 169
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   213 193
Otolemur_garnettii_76_3   (Small-eared galago)   87 79
Microcebus_murinus_76_1   (Gray mouse lemur)   66 60
Rattus_norvegicus_76_5.0   (Norway rat)   98 93
Mus_musculus_76_38   (House mouse)   231 216
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   66 63
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   89 79
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   65 60
Cavia_porcellus_76_3   (Domestic guinea pig)   67 60
Oryctolagus_cuniculus_76_2   (Rabbit)   70 65
Ochotona_princeps_76   (American pika)   65 60
Tupaia_belangeri_76   (Northern tree shrew)   51 49
Sus_scrofa_76_10.2   (Pig)   101 95
Bos_taurus_76_3.1   (Cattle)   84 78
Ovis_aries_76_3.1   (Sheep)   88 79
Vicugna_pacos_76_1   (Alpaca)   42 38
Tursiops_truncatus_76_1   (Bottlenose dolphin)   70 63
Mustela_putorius_furo_76_1.0   (Domestic ferret)   78 70
Ailuropoda_melanoleuca_76_1   (Giant panda)   85 76
Canis_familiaris_76_3.1   (Dog)   111 100
Felis_catus_76_6.2   (Domestic cat)   80 73
Equus_caballus_76_2   (Horse)   94 86
Myotis_lucifugus_76_2.0   (Little brown bat)   89 80
Pteropus_vampyrus_76_1   (Large flying fox)   69 65
Sorex_araneus_76_1   (European shrew)   46 40
Erinaceus_europaeus_76   (Western European hedgehog)   50 44
Procavia_capensis_76_1   (Cape rock hyrax)   58 53
Loxodonta_africana_76_3   (African savanna elephant)   101 92
Echinops_telfairi_76   (Small Madagascar hedgehog)   50 48
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   98 91
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   37 35
Macropus_eugenii_76_1.0   (Tammar wallaby)   60 55
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   91 84
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   81 73
Ornithorhynchus_anatinus_76_5   (Platypus)   61 54
Saccoglossus_kowalevskii_v3.0 290 248
Petromyzon_marinus_76_7.0   (Sea lamprey)   26 24
Meleagris_gallopavo_76_2   (Turkey)   81 73
Gallus_gallus_76_4   (Chicken)   69 63
Anas_platyrhynchos_76_1.0   (Mallard)   63 56
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   56 51
Ficedula_albicollis_76_1.0   (Collared flycatcher)   62 55
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   90 80
Anolis_carolinensis_76_2.0   (Green anole)   57 54
Xenopus_laevis_   (African clawed frog)   139 117
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   77 67
Latimeria_chalumnae_76_1   (Coelacanth)   90 79
Lepisosteus_oculatus_76   (Spotted gar)   110 97
Gadus_morhua_76_1   (Atlantic cod)   78 72
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   72 68
Takifugu_rubripes_76_4   (Torafugu)   249 222
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   125 113
Oryzias_latipes_76_1   (Japanese medaka)   65 63
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   83 76
Poecilia_formosa_76   (Amazon molly)   92 83
Oreochromis_niloticus_76_1.0   (Nile tilapia)   120 110
Astyanax_mexicanus_76   (Mexican tetra)   89 83
Danio_rerio_76_9   (Zebrafish)   191 177
Oikopleura_dioica 2 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   25 24
Ciona_intestinalis_76   (Vase tunicate)   25 22
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   258 233
Adineta_vaga 54 54
Octopus_bimaculoides_280 213 208
Crassostrea_gigas_22   (Pacific oyster)   113 99
Lottia_gigantea_   (Owl limpet)   74 66
Helobdella_robusta_ 38 36
Capitella_sp._I_ 234 217
Danaus_plexippus_OGS1.0   (Monarch butterfly)   15 14
Heliconius_melpomene_   (Postman butterfly)   12 12
Bombyx_mori_   (Domestic silkworm)   11 11
Nasonia_vitripennis_   (Jewel wasp)   9 9
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   16 16
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   14 13
Linepithema_humile_v1.1   (Argentine ant)   16 16
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   15 15
Solenopsis_invicta_v.2.2.3   (Red fire ant)   15 14
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   15 15
Atta_cephalotes_v1.1 14 14
Camponotus_floridanus_v3.3   (Florida carpenter ant)   15 15
Lucilia_cuprina   (Australian sheep blowfly)   9 9
Drosophila_grimshawi_1.3 10 9
Drosophila_willistoni_1.3 9 9
Drosophila_pseudoobscura_2.13 11 10
Drosophila_persimilis_1.3 10 9
Drosophila_suzukii 10 10
Drosophila_yakuba_1.3 11 10
Drosophila_simulans_1.3 8 7
Drosophila_sechellia_1.3 11 10
Drosophila_melanogaster_76_5   (Fruit fly)   26 26
Drosophila_erecta_1.3 10 10
Drosophila_ananassae_1.3 11 10
Drosophila_virilis_1.2 9 9
Drosophila_mojavensis_1.3 9 8
Megaselia_scalaris_22 6 6
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   12 12
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   14 14
Anopheles_darlingi_22   (American malaria mosquito)   9 8
Anopheles_gambiae_49_3j   (African malaria mosquito)   11 11
Tribolium_castaneum_3.0   (Red flour beetle)   15 14
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   13 13
Acyrthosiphon_pisum_   (Pea aphid)   8 8
Rhodnius_prolixus_22 11 11
Daphnia_pulex_   (Common water flea)   13 12
Strigamia_maritima_22 17 16
Sarcoptes_scabiei 6 6
Tetranychus_urticae_   (Two-spotted spider mite)   9 9
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   10 10
Pristionchus_pacificus_ 8 8
Meloidogyne_incognita_   (Southern root-knot nematode)   1 1
Meloidogyne_hapla_ 3 3
Onchocerca_volvulus_22 11 11
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   22 22
Caenorhabditis_japonica_ 8 8
Caenorhabditis_brenneri_ 18 18
Caenorhabditis_remanei_ 12 12
Caenorhabditis_elegans_76_235   (Roundworm)   21 21
Caenorhabditis_briggsae_2 9 9
Trichinella_spiralis_22 7 7
Hymenolepis_microstoma_ 5 5
Echinococcus_multilocularis_ 6 6
Echinococcus_granulosus_ 7 7
Taenia_solium_   (Pork tapeworm)   7 7
Schistosoma_mansoni_ 6 6
Mnemiopsis_leidyi   (Sea walnut)   11 10
Acropora_digitifera_v1.0 250 211
Nematostella_vectensis_1.0   (Starlet sea anemone)   58 47
Hydra_vulgaris 65 54
Amphimedon_queenslandica 336 313
Trichoplax_adhaerens_ 127 108
Eubacterium_eligens_ATCC_27750 1 1
Nitrosococcus_halophilus_Nc4 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   126 111
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   27 27
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   14 14
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   8 8
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   15 15

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   108 100
Pan_troglodytes_69_2.1.4   (Chimpanzee)   90 82
Gorilla_gorilla_69_3.1   (Western gorilla)   86 80
Pongo_abelii_69_2   (Sumatran orangutan)   83 75
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   83 74
Macaca_mulatta_69_1   (Rhesus monkey)   84 78
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   86 77
Otolemur_garnettii_69_3   (Small-eared galago)   84 76
Microcebus_murinus_69_1   (Gray mouse lemur)   66 60
Rattus_norvegicus_69_3.4   (Norway rat)   83 77
Mus_musculus_69_38   (House mouse)   93 86
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   65 62
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   77 69
Cavia_porcellus_69_3   (Domestic guinea pig)   66 59
Oryctolagus_cuniculus_69_2   (Rabbit)   70 65
Ochotona_princeps_69   (American pika)   65 60
Tupaia_belangeri_69   (Northern tree shrew)   51 49
Sus_scrofa_69_10.2   (Pig)   80 74
Bos_taurus_69_3.1   (Cattle)   76 70
Vicugna_pacos_69_1   (Alpaca)   41 37
Tursiops_truncatus_69_1   (Bottlenose dolphin)   69 62
Mustela_putorius_furo_69_1.0   (Domestic ferret)   78 70
Ailuropoda_melanoleuca_69_1   (Giant panda)   80 71
Canis_familiaris_69_3.1   (Dog)   83 74
Felis_catus_69   (Domestic cat)   57 52
Equus_caballus_69_2   (Horse)   77 70
Myotis_lucifugus_69_2.0   (Little brown bat)   81 74
Pteropus_vampyrus_69_1   (Large flying fox)   69 65
Sorex_araneus_69_1   (European shrew)   46 40
Erinaceus_europaeus_69   (Western European hedgehog)   50 44
Procavia_capensis_69_1   (Cape rock hyrax)   58 53
Loxodonta_africana_69_3   (African savanna elephant)   78 70
Echinops_telfairi_69   (Small Madagascar hedgehog)   50 48
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   58 53
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   37 35
Macropus_eugenii_69_1.0   (Tammar wallaby)   60 55
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   69 64
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   79 71
Ornithorhynchus_anatinus_69_5   (Platypus)   56 49
Petromyzon_marinus_69_7.0   (Sea lamprey)   22 20
Meleagris_gallopavo_69_2   (Turkey)   63 56
Gallus_gallus_69_2   (Chicken)   55 49
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   55 50
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   70 63
Anolis_carolinensis_69_2.0   (Green anole)   50 47
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   66 58
Latimeria_chalumnae_69_1   (Coelacanth)   73 65
Gadus_morhua_69_1   (Atlantic cod)   66 62
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   56 52
Takifugu_rubripes_69_4   (Torafugu)   66 60
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   94 85
Oryzias_latipes_69_1   (Japanese medaka)   57 55
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   83 76
Oreochromis_niloticus_69_1.0   (Nile tilapia)   87 79
Danio_rerio_69_9   (Zebrafish)   130 119
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   15 15
Ciona_intestinalis_69   (Vase tunicate)   25 22
Drosophila_melanogaster_69_5   (Fruit fly)   10 10
Caenorhabditis_elegans_69_215   (Roundworm)   9 9

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   625 583
Homo_sapiens__(NCBI_version)   (Human)   194 169
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   93 87
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   10 10
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   10 10
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   10 10
NCBI_plasmid_sequences_(Plasmids) 1 1
UniProt__viral_sequences_(Viral) 45 42
NCBI_viral_sequences_(Viral) 21 19
Protein_Data_Bank_(all_PDB_sequenc) 460 435
PDB_chains_(SCOP_1.75)_(PDB) 25 25
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 583 583
STRING_v9.0.5_(STRING) 3440 2843
Uniprot_2018_03_genome 24966 22625
TargetDB__(Targets) 202 181
NCBI_2017_08_genome 48705 43517

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