SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for Di-copper centre-containing domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Di-copper centre-containing domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   7 6
Pan_troglodytes_76_2.1.4   (Chimpanzee)   4 3
Gorilla_gorilla_76_3.1   (Western gorilla)   8 6
Pongo_abelii_76_2   (Sumatran orangutan)   3 3
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   4 3
Papio_anubis_76   (Olive baboon)   3 3
Macaca_mulatta_76_1   (Rhesus monkey)   8 8
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   10 10
Otolemur_garnettii_76_3   (Small-eared galago)   3 3
Microcebus_murinus_76_1   (Gray mouse lemur)   4 3
Rattus_norvegicus_76_5.0   (Norway rat)   3 3
Mus_musculus_76_38   (House mouse)   6 6
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3 3
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3 3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   4 3
Cavia_porcellus_76_3   (Domestic guinea pig)   3 3
Oryctolagus_cuniculus_76_2   (Rabbit)   4 4
Ochotona_princeps_76   (American pika)   3 3
Tupaia_belangeri_76   (Northern tree shrew)   4 3
Sus_scrofa_76_10.2   (Pig)   3 3
Bos_taurus_76_3.1   (Cattle)   4 4
Ovis_aries_76_3.1   (Sheep)   4 4
Vicugna_pacos_76_1   (Alpaca)   4 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   3 3
Mustela_putorius_furo_76_1.0   (Domestic ferret)   3 3
Ailuropoda_melanoleuca_76_1   (Giant panda)   4 4
Canis_familiaris_76_3.1   (Dog)   3 3
Felis_catus_76_6.2   (Domestic cat)   3 3
Equus_caballus_76_2   (Horse)   3 3
Myotis_lucifugus_76_2.0   (Little brown bat)   4 3
Pteropus_vampyrus_76_1   (Large flying fox)   4 3
Sorex_araneus_76_1   (European shrew)   3 3
Erinaceus_europaeus_76   (Western European hedgehog)   4 3
Procavia_capensis_76_1   (Cape rock hyrax)   4 3
Loxodonta_africana_76_3   (African savanna elephant)   3 3
Echinops_telfairi_76   (Small Madagascar hedgehog)   4 3
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   3 3
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   4 3
Macropus_eugenii_76_1.0   (Tammar wallaby)   5 3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   5 5
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   3 3
Ornithorhynchus_anatinus_76_5   (Platypus)   4 4
Saccoglossus_kowalevskii_v3.0 6 6
Petromyzon_marinus_76_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_76_2   (Turkey)   3 3
Gallus_gallus_76_4   (Chicken)   3 3
Anas_platyrhynchos_76_1.0   (Mallard)   3 3
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   3 3
Ficedula_albicollis_76_1.0   (Collared flycatcher)   3 3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   3 3
Anolis_carolinensis_76_2.0   (Green anole)   3 3
Xenopus_laevis_   (African clawed frog)   11 11
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   5 5
Latimeria_chalumnae_76_1   (Coelacanth)   3 3
Lepisosteus_oculatus_76   (Spotted gar)   5 5
Gadus_morhua_76_1   (Atlantic cod)   5 5
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   6 6
Takifugu_rubripes_76_4   (Torafugu)   8 8
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   8 8
Oryzias_latipes_76_1   (Japanese medaka)   5 5
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   5 5
Poecilia_formosa_76   (Amazon molly)   5 5
Oreochromis_niloticus_76_1.0   (Nile tilapia)   6 6
Astyanax_mexicanus_76   (Mexican tetra)   5 5
Danio_rerio_76_9   (Zebrafish)   7 7
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   15 15
Ciona_intestinalis_76   (Vase tunicate)   16 16
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1 1
Octopus_bimaculoides_280 28 18
Crassostrea_gigas_22   (Pacific oyster)   28 26
Lottia_gigantea_   (Owl limpet)   3 3
Helobdella_robusta_ 1 1
Capitella_sp._I_ 3 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   11 10
Heliconius_melpomene_   (Postman butterfly)   14 11
Bombyx_mori_   (Domestic silkworm)   11 11
Nasonia_vitripennis_   (Jewel wasp)   10 10
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   10 10
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   6 6
Linepithema_humile_v1.1   (Argentine ant)   5 5
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   5 5
Solenopsis_invicta_v.2.2.3   (Red fire ant)   5 4
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   4 4
Atta_cephalotes_v1.1 4 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   8 8
Lucilia_cuprina   (Australian sheep blowfly)   11 10
Drosophila_grimshawi_1.3 6 6
Drosophila_willistoni_1.3 8 8
Drosophila_pseudoobscura_2.13 7 7
Drosophila_persimilis_1.3 7 7
Drosophila_suzukii 8 8
Drosophila_yakuba_1.3 9 9
Drosophila_simulans_1.3 7 7
Drosophila_sechellia_1.3 8 8
Drosophila_melanogaster_76_5   (Fruit fly)   8 8
Drosophila_erecta_1.3 8 8
Drosophila_ananassae_1.3 7 7
Drosophila_virilis_1.2 7 7
Drosophila_mojavensis_1.3 6 6
Megaselia_scalaris_22 6 6
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   24 24
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   20 20
Anopheles_darlingi_22   (American malaria mosquito)   10 9
Anopheles_gambiae_49_3j   (African malaria mosquito)   14 14
Tribolium_castaneum_3.0   (Red flour beetle)   12 12
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3 3
Acyrthosiphon_pisum_   (Pea aphid)   2 2
Rhodnius_prolixus_22 8 8
Daphnia_pulex_   (Common water flea)   1 1
Strigamia_maritima_22 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   3 3
Pristionchus_pacificus_ 11 10
Meloidogyne_incognita_   (Southern root-knot nematode)   24 24
Meloidogyne_hapla_ 10 10
Onchocerca_volvulus_22 5 5
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   8 8
Caenorhabditis_japonica_ 6 5
Caenorhabditis_brenneri_ 10 10
Caenorhabditis_remanei_ 7 7
Caenorhabditis_elegans_76_235   (Roundworm)   6 6
Caenorhabditis_briggsae_2 7 7
Trichinella_spiralis_22 6 5
Schistosoma_mansoni_ 2 2
Mnemiopsis_leidyi   (Sea walnut)   5 5
Acropora_digitifera_v1.0 6 6
Nematostella_vectensis_1.0   (Starlet sea anemone)   5 5
Hydra_vulgaris 4 4
Amphimedon_queenslandica 6 6
Proterospongia_sp._ATCC_50818_ 7 7
Monosiga_brevicollis_ 1 1
Sphaeroforma_arctica_JP610_ 2 2
Conidiobolus_coronatus_NRRL28638_v1.0 51 51
Mortierella_verticillata_NRRL_6337_ 1 1
Sporisorium_reilianum_22 3 3
Ustilago_maydis_ 2 2
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 9 9
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 5 5
Melampsora_laricis-populina_ 8 8
Wallemia_sebi_v1.0 4 4
Sphaerobolus_stellatus_v1.0 14 14
Piloderma_croceum_F_1598_v1.0 8 8
Serpula_lacrymans_var._lacrymans_S7.9_ 3 3
Coniophora_puteana 1 1
Hydnomerulius_pinastri_v2.0 6 6
Paxillus_rubicundulus_Ve08.2h10_v1.0 6 6
Pisolithus_microcarpus_441_v1.0 5 5
Pisolithus_tinctorius_Marx_270_v1.0 6 6
Scleroderma_citrinum_Foug_A_v1.0 2 2
Coprinopsis_cinerea_okayama7_130_v3 20 20
Pleurotus_ostreatus_   (Oyster mushroom)   4 4
Amanita_thiersii_Skay4041_v1.0 1 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2 2
Galerina_marginata_v1.0 4 4
Hebeloma_cylindrosporum_h7_v2.0 3 3
Laccaria_bicolor_S238N-H82_ 3 3
Agaricus_bisporus_var._bisporus_ 7 7
Schizophyllum_commune_ 1 1
Stereum_hirsutum_FP-91666_SS1__v1.0 7 7
Heterobasidion_annosum_ 3 3
Gloeophyllum_trabeumv1.0 2 2
Punctularia_strigosozonata_v1.0 3 3
Sebacina_vermifera_MAFF_305830_v1.0 15 15
Fomitiporia_mediterranea_v1.0 2 2
Tulasnella_calospora_AL13/4D_v1.0 4 4
Postia_placenta_ 2 2
Wolfiporia_cocos_MD-104_SS10__v1.0 3 3
Fomitopsis_pinicolav1.0 3 3
Fomitopsis_pinicola_FP-58527_SS1_v3.0 3 3
Dichomitus_squalens 3 3
Trametes_versicolor_v1.0 5 5
Daldinia_eschscholzii_EC12_v1.0 12 12
Apiospora_montagnei_NRRL_25634_v1.0 39 39
Magnaporthe_poae_ATCC_64411_22 19 19
Magnaporthe_grisea_70-15_ 17 17
Podospora_anserina_ 16 16
Sporotrichum_thermophile_ATCC_42464_ 12 11
Thielavia_terrestris_NRRL_8126_ 10 10
Chaetomium_globosum_CBS_148.51_ 17 17
Neurospora_tetrasperma_ 7 7
Neurospora_discreta_FGSC_8579_ 7 7
Neurospora_crassa_OR74A_ 8 8
Cryphonectria_parasitica_   (Chestnut blight fungus)   5 5
Verticillium_albo-atrum_VaMs.102_ 7 7
Verticillium_dahliae_VdLs.17_ 8 7
Acremonium_alcalophilumv_1.0 4 4
Glomerella_graminicola_22 13 13
Fusarium_graminearum_ 15 15
Nectria_haematococca_mpVI_ 8 8
Fusarium_oxysporum_f._sp._lycopersici_4286_ 12 12
Fusarium_verticillioides_7600_ 17 17
Trichoderma_asperellum_CBS_433.97_v1.0 5 5
Trichoderma_atroviride_ 3 3
Trichoderma_citrinoviride_v1.0 4 4
Trichoderma_reesei_1.2 3 3
Trichoderma_virens_Gv29-8_ 4 4
Trichoderma_longibrachiatum_ATCC_18648_v1.0 4 4
Trichoderma_harzianum_CBS_226.95_v1.0 3 3
Amorphotheca_resinae_v1.0   (Creosote fungus)   4 4
Botrytis_cinerea_B05.10_ 10 10
Sclerotinia_sclerotiorum_ 4 4
Blumeria_graminis_22 3 3
Didymella_exigua_CBS_183.55_v1.0 13 13
Leptosphaeria_maculans_22 9 9
Setosphaeria_turcica_v1.0 12 12
Cochliobolus_miyabeanus_ATCC_44560_v1.0 12 12
Cochliobolus_victoriae_FI3_v1.0 15 15
Cochliobolus_carbonum_26-R-13_v1.0 13 13
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   11 11
Alternaria_brassicicola_ 15 15
Cochliobolus_lunatus_m118_v2.0 13 13
Pyrenophora_teres_f._teres_22 11 11
Pyrenophora_tritici-repentis_ 12 12
Stagonospora_nodorum_ 16 16
Mycosphaerella_graminicola_IPO323_ 14 14
Zasmidium_cellare_ATCC_36951_v1.0 15 15
Dothistroma_septosporum 10 10
Septoria_musiva_v1.0 13 13
Mycosphaerella_fijiensis_CIRAD86_ 10 10
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 5 5
Paracoccidioides_brasiliensis_Pb18_ 5 5
Coccidioides_posadasii_RMSCC_3488_ 3 3
Coccidioides_immitis_RS_ 3 3
Ajellomyces_dermatitidis_SLH14081_ 7 7
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 7 7
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_equinum_CBS_127.97_ 1 1
Trichophyton_verrucosum_HKI_0517_ 1 1
Arthroderma_benhamiae_CBS_112371_ 1 1
Trichophyton_tonsurans_CBS_112818_ 1 1
Trichophyton_rubrum_CBS_118892_ 1 1
Uncinocarpus_reesii_1704_ 5 5
Aspergillus_zonatus_v1.0 5 5
Penicillium_chrysogenum_Wisconsin_54-1255_ 5 5
Penicillium_chrysogenum_v1.0 5 5
Aspergillus_acidus_v1.0 7 7
Aspergillus_fumigatus_Af293 3 3
Aspergillus_brasiliensis_v1.0 6 6
Aspergillus_nidulans_FGSC_A4_ 11 11
Aspergillus_sydowii_v1.0 8 8
Aspergillus_versicolor_v1.0 10 10
Aspergillus_glaucus 4 4
Aspergillus_carbonarius_ITEM_5010_ 9 9
Neosartorya_fischeri_NRRL_181_ 4 4
Aspergillus_terreus_NIH2624_ 4 4
Aspergillus_tubingensis_v1.0 7 7
Aspergillus_wentii_v1.0 9 9
Aspergillus_oryzae_RIB40_ 9 9
Aspergillus_niger_22 7 7
Aspergillus_niger_ATCC_1015_ 4 4
Aspergillus_flavus_NRRL3357_ 10 10
Aspergillus_clavatus_NRRL_1_ 4 4
Penicillium_marneffei_ATCC_18224_ 3 3
Tuber_melanosporum_Mel28_22 4 4
Tuber_melanosporum_Vittad_   (Perigord truffle)   4 4
Catenaria_anguillulae_PL171_v1.0 22 22
Allomyces_macrogynus_ATCC_38327_ 16 16
Spizellomyces_punctatus_DAOM_BR117_ 3 3
Dictyostelium_discoideum 2 2
Selaginella_moellendorffii_ 16 16
Eucalyptus_grandis_v201   (Rose gum)   5 5
Theobroma_cacao_B97-61/B2_v1   (Cacao)   8 8
Gossypium_raimondii_v221 8 8
Citrus_clementina_v165 1 1
Citrus_sinensis_v154   (Sweet orange)   1 1
Carica_papaya_   (Papaya)   8 8
Medicago_truncatula_   (Barrel medic)   4 4
Phaseolus_vulgaris_v186   (French bean)   3 3
Glycine_max_v109   (Soybean)   16 15
Cucumis_sativus_v122   (Cucumber)   2 2
Fragaria_vesca_   (Wild strawberry)   6 6
Malus_domestica_v196   (Apple)   20 20
Prunus_persica_v139   (Peach)   7 7
Linum_usitatissimum_v200   (Flax)   13 13
Manihot_esculenta_v147   (Cassava)   1 1
Populus_trichocarpa_v156   (Black cottonwood)   15 15
Vitis_vinifera_   (Wine grape)   2 2
Mimulus_guttatus_v140   (Spotted monkey flower)   11 11
Solanum_lycopersicum_v.2.3   (Tomato)   9 7
Solanum_tuberosum_   (Potato)   10 10
Actinidia_chinensis_Hongyang_ 5 4
Aquilegia_coerulea_v195 13 13
Triticum_urartu_22 6 6
Triticum_aestivum_22   (Bread wheat)   13 13
Aegilops_tauschii_22 5 5
Brachypodium_distachyon_   (Stiff brome)   6 6
Oryza_barthii_22   (African wild rice)   7 4
Oryza_meridionalis_22 3 3
Oryza_glumaepatula_22 4 4
Oryza_glaberrima   (African rice)   3 3
Oryza_punctata_22 6 6
Oryza_nivara_22 6 5
Oryza_brachyantha_22   (Malo sina)   3 3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   6 6
Oryza_sativa_v193   (Rice)   6 6
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   3 3
Panicum_virgatum_v202   (Switchgrass)   14 14
Setaria_italica_v164   (Foxtail millet)   4 4
Zea_mays_subsp._mays_   (Maize)   6 6
Zea_mays_v181   (Maize)   6 6
Sorghum_bicolor_   (Sorghum)   9 9
Musa_balbisiana   (Balbis banana)   8 8
Musa_acuminata_22   (Wild Malaysian banana)   9 8
Physcomitrella_patens 15 15
Chlorella_variabilis_sp._NC64A_ 1 1
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Bigelowiella_natans_CCMP2755_22 2 2
Ectocarpus_siliculosus 33 30
Aureococcus_anophagefferens_ 42 38
Albugo_laibachii_22 4 4
Pythium_iwayamai_DAOM_BR242034_22 14 14
Pythium_arrhenomanes_ATCC_12531_22 10 10
Pythium_ultimum_v1.7-2 14 13
Pythium_aphanidermatum_DAOM_BR444_22 11 11
Pythium_irregulare_DAOM_BR486_22 17 16
Pythium_vexans_DAOM_BR484_22 10 9
Phytophthora_ramorum_1.1   (Sudden oak death agent)   12 12
Phytophthora_sojae_1.1 19 19
Phytophthora_infestans_T30-4_ 17 17
Phytophthora_capsici_ 8 8
Hyaloperonospora_arabidopsidis_22 6 6
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Fragilariopsis_cylindrus 5 5
Symbiodinium_minutum_clade_B1_v1.2 3 3
Emiliania_huxleyi_CCMP1516_ 15 13
Acaryochloris_marina_MBIC11017 1 1
Gloeocapsa_sp._PCC_7428 2 2
Rivularia_sp._PCC_7116 3 3
Nostoc_punctiforme_PCC_73102 2 2
Rubrobacter_xylanophilus_DSM_9941 1 1
Geodermatophilus_obscurus_DSM_43160 1 1
Frankia_symbiont_of_Datisca_glomerata 1 1
Frankia_sp._EAN1pec 1 1
Frankia_alni_ACN14a 1 1
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_sp._PAMC26508 1 1
Streptomyces_flavogriseus_ATCC_33331 1 1
Streptomyces_sp._SirexAA-E 1 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 3 3
Streptomyces_avermitilis_MA-4680 3 3
Streptomyces_scabiei_87.22 2 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1 1
Actinoplanes_sp._SE50/110 1 1
Corynebacterium_efficiens_YS-314 1 1
Cellulomonas_flavigena_DSM_20109 1 1
Bacillus_sp._1NLA3E 1 1
Bacillus_atrophaeus_1942 1 1
Bacillus_megaterium_DSM_319 1 1
Haliscomenobacter_hydrossis_DSM_1100 1 1
Dyadobacter_fermentans_DSM_18053 1 1
Cellulophaga_algicola_DSM_14237 1 1
Rhodopirellula_baltica_SH_1 1 1
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Granulicella_mallensis_MP5ACTX8 1 1
Terriglobus_saanensis_SP1PR4 2 2
Candidatus_Nitrospira_defluvii 1 1
Sorangium_cellulosum_'So_ce_56' 1 1
Anaeromyxobacter_dehalogenans_2CP-1 1 1
Stigmatella_aurantiaca_DW4/3-1 1 1
Chromobacterium_violaceum_ATCC_12472 2 2
Burkholderia_phymatum_STM815 1 1
Ralstonia_solanacearum_CFBP2957 2 2
Burkholderia_thailandensis_E264 1 1
Burkholderia_pseudomallei_1106a 1 1
Delftia_acidovorans_SPH-1 1 1
Nitrosospira_multiformis_ATCC_25196 3 3
Nitrosomonas_europaea_ATCC_19718 1 1
Ruegeria_pomeroyi_DSS-3 1 1
Paracoccus_denitrificans_PD1222 1 1
Azospirillum_lipoferum_4B 1 1
Methylobacterium_sp._4-46 1 1
Sinorhizobium_medicae_WSM419 2 2
Sinorhizobium_meliloti_AK83 1 1
Agrobacterium_vitis_S4 1 1
Mesorhizobium_opportunistum_WSM2075 1 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1 1
Nitrobacter_winogradskyi_Nb-255 1 1
Nitrobacter_hamburgensis_X14 2 2
Methylocystis_sp._SC2 1 1
Saccharophagus_degradans_2-40 1 1
Cellvibrio_japonicus_Ueda107 1 1
Hahella_chejuensis_KCTC_2396 1 1
Marinomonas_mediterranea_MMB-1 1 1
Azotobacter_vinelandii_DJ 1 1
Pseudomonas_sp._TKP 1 1
Pseudomonas_sp._UW4 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1 1
Pseudomonas_entomophila_L48 1 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1 1
Pseudomonas_putida_F1 1 1
Pseudomonas_fluorescens_SBW25 1 1
Pseudomonas_aeruginosa_UCBPP-PA14 1 1
Pseudomonas_sp._VLB120 2 2
Candidatus_Nitrosopumilus_sp._AR2 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   8 8
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   8 8
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   14 14
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   9 8
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   6 6
Paracoccidioides_brasiliensis_Pb01_ 6 6
Paracoccidioides_brasiliensis_Pb03_ 6 6
Coccidioides_posadasii_str._Silveira_ 3 3
Coccidioides_immitis_RMSCC_3703_ 4 4
Coccidioides_immitis_RMSCC_2394_ 3 3
Coccidioides_immitis_H538.4_ 3 3
Ajellomyces_dermatitidis_ER-3_ 7 7
Histoplasma_capsulatum_H143 7 7
Histoplasma_capsulatum_H88 7 7
Histoplasma_capsulatum_G186AR 7 7
Aspergillus_fumigatus_A1163_ 2 2
Batrachochytrium_dendrobatidis_JEL423_ 13 13
Batrachochytrium_dendrobatidis_JAM81_ 12 12
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   7 7
Hordeum_vulgare_22   (Domesticated barley)   2 2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5 5
Chroococcidiopsis_thermalis_PCC_7203 2 2
Frankia_sp._CcI3 1 1
Streptomyces_davawensis_JCM_4913 3 3
Streptomyces_fulvissimus_DSM_40593 1 1
Streptomyces_venezuelae_ATCC_10712 2 2
Streptomyces_collinus_Tu_365 2 2
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1 1
Saccharothrix_espanaensis_DSM_44229 1 1
Bacillus_thuringiensis_BMB171 1 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1 1
Bacillus_cereus_AH820 1 1
Bacillus_cereus_ATCC_10987 1 1
Bacillus_megaterium_WSH-002 1 1
Bacillus_megaterium_QM_B1551 1 1
Singulisphaera_acidiphila_DSM_18658 1 1
Sorangium_cellulosum_So0157-2 2 2
Ralstonia_solanacearum_FQY_4 2 2
Ralstonia_solanacearum_Po82 2 2
Ralstonia_solanacearum_PSI07 2 2
Ralstonia_solanacearum_CMR15 2 2
Ralstonia_solanacearum_GMI1000 2 2
Burkholderia_thailandensis_MSMB121 1 1
Burkholderia_pseudomallei_MSHR305 1 1
Burkholderia_pseudomallei_NCTC_13179 1 1
Burkholderia_pseudomallei_BPC006 1 1
Burkholderia_pseudomallei_1026b 1 1
Burkholderia_pseudomallei_668 1 1
Burkholderia_pseudomallei_1710b 1 1
Burkholderia_pseudomallei_K96243 1 1
Burkholderia_lata 1 1
Sinorhizobium_fredii_HH103 1 1
Sinorhizobium_meliloti_2011 1 1
Sinorhizobium_meliloti_GR4 1 1
Sinorhizobium_meliloti_SM11 2 2
Sinorhizobium_meliloti_BL225C 2 2
Sinorhizobium_meliloti_1021 1 1
Rhizobium_etli_CFN_42 1 1
Mesorhizobium_australicum_WSM2073 1 1
Rhodopseudomonas_palustris_HaA2 1 1
Bradyrhizobium_oligotrophicum_S58 1 1
Bradyrhizobium_japonicum_USDA_6 2 2
Vibrio_nigripulchritudo_VibrioScope 1 1
Stenotrophomonas_maltophilia_JV3 1 1
Azotobacter_vinelandii_CA6 1 1
Azotobacter_vinelandii_CA 1 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1 1
Pseudomonas_syringae_pv._syringae_B728a 1 1
Pseudomonas_monteilii_SB3101 2 2
Pseudomonas_monteilii_SB3078 2 2
Pseudomonas_putida_H8234 1 1
Pseudomonas_putida_HB3267 2 2
Pseudomonas_putida_NBRC_14164 2 2
Pseudomonas_putida_DOT-T1E 1 1
Pseudomonas_putida_S16 2 2
Pseudomonas_putida_BIRD-1 1 1
Pseudomonas_putida_W619 1 1
Pseudomonas_putida_ND6 1 1
Pseudomonas_putida_KT2440 1 1
Pseudomonas_putida_GB-1 1 1
Pseudomonas_poae_RE*1-1-14 1 1
Pseudomonas_fluorescens_F113 1 1
Pseudomonas_fluorescens_A506 2 2
Pseudomonas_fluorescens_R124 1 1
Pseudomonas_fluorescens_Pf0-1 2 2
Pseudomonas_resinovorans_NBRC_106553 1 1
Pseudomonas_aeruginosa_SCV20265 1 1
Pseudomonas_aeruginosa_MTB-1 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_B136-33 1 1
Pseudomonas_aeruginosa_PA1R 1 1
Pseudomonas_aeruginosa_PA1 1 1
Pseudomonas_aeruginosa_DK2 1 1
Pseudomonas_aeruginosa_M18 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Pseudomonas_aeruginosa_PA7 1 1
Pseudomonas_aeruginosa_PAO1 1 1
Acinetobacter_calcoaceticus_ruh2202 1 1
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   4 3
Pan_troglodytes_69_2.1.4   (Chimpanzee)   4 3
Gorilla_gorilla_69_3.1   (Western gorilla)   6 4
Pongo_abelii_69_2   (Sumatran orangutan)   3 3
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   4 3
Macaca_mulatta_69_1   (Rhesus monkey)   3 3
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   4 4
Otolemur_garnettii_69_3   (Small-eared galago)   3 3
Microcebus_murinus_69_1   (Gray mouse lemur)   4 3
Rattus_norvegicus_69_3.4   (Norway rat)   3 3
Mus_musculus_69_38   (House mouse)   3 3
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   3 3
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3 3
Cavia_porcellus_69_3   (Domestic guinea pig)   3 3
Oryctolagus_cuniculus_69_2   (Rabbit)   3 3
Ochotona_princeps_69   (American pika)   3 3
Tupaia_belangeri_69   (Northern tree shrew)   4 3
Sus_scrofa_69_10.2   (Pig)   3 3
Bos_taurus_69_3.1   (Cattle)   3 3
Vicugna_pacos_69_1   (Alpaca)   4 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   3 3
Mustela_putorius_furo_69_1.0   (Domestic ferret)   3 3
Ailuropoda_melanoleuca_69_1   (Giant panda)   4 4
Canis_familiaris_69_3.1   (Dog)   3 3
Felis_catus_69   (Domestic cat)   2 2
Equus_caballus_69_2   (Horse)   3 3
Myotis_lucifugus_69_2.0   (Little brown bat)   4 3
Pteropus_vampyrus_69_1   (Large flying fox)   4 3
Sorex_araneus_69_1   (European shrew)   3 3
Erinaceus_europaeus_69   (Western European hedgehog)   4 3
Procavia_capensis_69_1   (Cape rock hyrax)   4 3
Loxodonta_africana_69_3   (African savanna elephant)   3 3
Echinops_telfairi_69   (Small Madagascar hedgehog)   4 3
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   4 3
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   4 3
Macropus_eugenii_69_1.0   (Tammar wallaby)   5 3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   4 4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   3 3
Ornithorhynchus_anatinus_69_5   (Platypus)   3 3
Petromyzon_marinus_69_7.0   (Sea lamprey)   1 1
Meleagris_gallopavo_69_2   (Turkey)   3 3
Gallus_gallus_69_2   (Chicken)   4 4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3 3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3 3
Anolis_carolinensis_69_2.0   (Green anole)   3 3
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   5 5
Latimeria_chalumnae_69_1   (Coelacanth)   3 3
Gadus_morhua_69_1   (Atlantic cod)   5 5
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   4 4
Takifugu_rubripes_69_4   (Torafugu)   4 4
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   5 5
Oryzias_latipes_69_1   (Japanese medaka)   5 5
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   5 5
Oreochromis_niloticus_69_1.0   (Nile tilapia)   5 5
Danio_rerio_69_9   (Zebrafish)   4 4
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   9 9
Ciona_intestinalis_69   (Vase tunicate)   14 14
Drosophila_melanogaster_69_5   (Fruit fly)   8 8
Caenorhabditis_elegans_69_215   (Roundworm)   6 6

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   8 7
Homo_sapiens__(NCBI_version)   (Human)   5 4
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3 3
Heliconius_numata__(Incomplete) 8 8
Loa_loa_v3.3_(Request)   (Eye worm)   5 5
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   7 7
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   6 6
Moniliophthora_perniciosa_FA553__(Genome_survey) 7 7
Lotus_japonicus__(Early_assembly) 1 1
Malus_x_domestica_(Duplicate)   (Apple)   20 20
Ricinus_communis__(Early_assembly)   (Castor bean)   1 1
Nicotiana_benthamiana_0.4.4_(Early_draft) 11 9
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   9 7
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   9 7
Phoenix_dactylifera__(Early_draft)   (Date palm)   2 2
NCBI_plasmid_sequences_(Plasmids) 18 18
PDB_chains_(SCOP_1.75)_(PDB) 7 7
Protein_Data_Bank_(all_PDB_sequenc) 361 285
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 534 534
STRING_v9.0.5_(STRING) 603 600
NCBI_2017_08_genome 11969 11855
TargetDB__(Targets) 11 11
Uniprot_2018_03_genome 16799 16338

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]