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Domain combinations for Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   20 20
Pan_troglodytes_76_2.1.4   (Chimpanzee)   12 12
Gorilla_gorilla_76_3.1   (Western gorilla)   16 16
Pongo_abelii_76_2   (Sumatran orangutan)   11 11
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   8 8
Papio_anubis_76   (Olive baboon)   9 9
Macaca_mulatta_76_1   (Rhesus monkey)   15 15
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   25 25
Otolemur_garnettii_76_3   (Small-eared galago)   10 10
Microcebus_murinus_76_1   (Gray mouse lemur)   10 9
Rattus_norvegicus_76_5.0   (Norway rat)   17 17
Mus_musculus_76_38   (House mouse)   22 22
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   11 10
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   9 9
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   10 10
Cavia_porcellus_76_3   (Domestic guinea pig)   5 5
Oryctolagus_cuniculus_76_2   (Rabbit)   10 10
Ochotona_princeps_76   (American pika)   8 8
Tupaia_belangeri_76   (Northern tree shrew)   8 7
Sus_scrofa_76_10.2   (Pig)   14 14
Bos_taurus_76_3.1   (Cattle)   19 19
Ovis_aries_76_3.1   (Sheep)   18 18
Vicugna_pacos_76_1   (Alpaca)   10 9
Tursiops_truncatus_76_1   (Bottlenose dolphin)   7 7
Mustela_putorius_furo_76_1.0   (Domestic ferret)   9 8
Ailuropoda_melanoleuca_76_1   (Giant panda)   10 10
Canis_familiaris_76_3.1   (Dog)   8 8
Felis_catus_76_6.2   (Domestic cat)   9 9
Equus_caballus_76_2   (Horse)   8 8
Myotis_lucifugus_76_2.0   (Little brown bat)   22 22
Pteropus_vampyrus_76_1   (Large flying fox)   6 6
Sorex_araneus_76_1   (European shrew)   7 6
Erinaceus_europaeus_76   (Western European hedgehog)   8 7
Procavia_capensis_76_1   (Cape rock hyrax)   8 8
Loxodonta_africana_76_3   (African savanna elephant)   18 18
Echinops_telfairi_76   (Small Madagascar hedgehog)   8 8
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   14 13
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   9 8
Macropus_eugenii_76_1.0   (Tammar wallaby)   11 11
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   10 10
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   11 11
Ornithorhynchus_anatinus_76_5   (Platypus)   12 12
Saccoglossus_kowalevskii_v3.0 2 2
Petromyzon_marinus_76_7.0   (Sea lamprey)   8 8
Meleagris_gallopavo_76_2   (Turkey)   7 7
Gallus_gallus_76_4   (Chicken)   6 6
Anas_platyrhynchos_76_1.0   (Mallard)   5 5
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   4 4
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2 2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   3 3
Anolis_carolinensis_76_2.0   (Green anole)   6 6
Xenopus_laevis_   (African clawed frog)   17 17
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   19 19
Latimeria_chalumnae_76_1   (Coelacanth)   11 11
Lepisosteus_oculatus_76   (Spotted gar)   9 9
Gadus_morhua_76_1   (Atlantic cod)   4 4
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   4 4
Takifugu_rubripes_76_4   (Torafugu)   11 11
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   4 4
Oryzias_latipes_76_1   (Japanese medaka)   6 6
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   3 3
Poecilia_formosa_76   (Amazon molly)   3 3
Oreochromis_niloticus_76_1.0   (Nile tilapia)   5 5
Astyanax_mexicanus_76   (Mexican tetra)   8 8
Danio_rerio_76_9   (Zebrafish)   16 16
Oikopleura_dioica 1 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   6 6
Ciona_intestinalis_76   (Vase tunicate)   2 2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   9 7
Adineta_vaga 4 4
Octopus_bimaculoides_280 1 1
Crassostrea_gigas_22   (Pacific oyster)   1 1
Lottia_gigantea_   (Owl limpet)   1 1
Helobdella_robusta_ 2 2
Capitella_sp._I_ 4 4
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2 2
Heliconius_melpomene_   (Postman butterfly)   2 2
Bombyx_mori_   (Domestic silkworm)   6 5
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   3 3
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1 1
Linepithema_humile_v1.1   (Argentine ant)   1 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1 1
Atta_cephalotes_v1.1 1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1 1
Lucilia_cuprina   (Australian sheep blowfly)   1 1
Drosophila_grimshawi_1.3 1 1
Drosophila_willistoni_1.3 1 1
Drosophila_pseudoobscura_2.13 1 1
Drosophila_persimilis_1.3 1 1
Drosophila_suzukii 2 1
Drosophila_yakuba_1.3 1 1
Drosophila_simulans_1.3 1 1
Drosophila_sechellia_1.3 1 1
Drosophila_melanogaster_76_5   (Fruit fly)   2 2
Drosophila_erecta_1.3 1 1
Drosophila_ananassae_1.3 1 1
Drosophila_virilis_1.2 1 1
Drosophila_mojavensis_1.3 1 1
Megaselia_scalaris_22 10 9
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1 1
Anopheles_darlingi_22   (American malaria mosquito)   1 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1 1
Tribolium_castaneum_3.0   (Red flour beetle)   2 2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1 1
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Rhodnius_prolixus_22 2 2
Daphnia_pulex_   (Common water flea)   1 1
Strigamia_maritima_22 10 8
Sarcoptes_scabiei 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   4 4
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1 1
Pristionchus_pacificus_ 4 4
Meloidogyne_incognita_   (Southern root-knot nematode)   3 3
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 2 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   4 4
Caenorhabditis_japonica_ 2 2
Caenorhabditis_brenneri_ 2 2
Caenorhabditis_remanei_ 5 5
Caenorhabditis_elegans_76_235   (Roundworm)   7 7
Caenorhabditis_briggsae_2 2 2
Trichinella_spiralis_22 2 2
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 1 1
Echinococcus_granulosus_ 1 1
Taenia_solium_   (Pork tapeworm)   1 1
Schistosoma_mansoni_ 1 1
Mnemiopsis_leidyi   (Sea walnut)   1 1
Thelohanellus_kitauei 1 1
Acropora_digitifera_v1.0 11 11
Nematostella_vectensis_1.0   (Starlet sea anemone)   4 4
Hydra_vulgaris 2 2
Amphimedon_queenslandica 4 4
Trichoplax_adhaerens_ 2 2
Proterospongia_sp._ATCC_50818_ 1 1
Monosiga_brevicollis_ 1 1
Capsaspora_owczarzaki_ATCC_30864_ 2 2
Fomitopsis_pinicolav1.0 1 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1 1
Setosphaeria_turcica_v1.0 1 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1 1
Cochliobolus_lunatus_m118_v2.0 1 1
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 1 1
Catenaria_anguillulae_PL171_v1.0 2 2
Allomyces_macrogynus_ATCC_38327_ 6 6
Spizellomyces_punctatus_DAOM_BR117_ 2 2
Dictyostelium_purpureum_ 1 1
Entamoeba_dispar_1.2 1 1
Entamoeba_histolytica_1 1 1
Selaginella_moellendorffii_ 3 3
Pinus_taeda   (Loblolly pine)   1 1
Picea_abies   (Norway spruce)   2 2
Eucalyptus_grandis_v201   (Rose gum)   4 4
Theobroma_cacao_B97-61/B2_v1   (Cacao)   4 4
Gossypium_raimondii_v221 15 15
Citrus_clementina_v165 3 3
Citrus_sinensis_v154   (Sweet orange)   9 9
Thellungiella_halophila_v173 4 4
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   5 5
Capsella_rubella_v183 4 4
Arabidopsis_lyrata_   (Lyrate rockcress)   1 1
Arabidopsis_thaliana_10   (Thale cress)   4 4
Carica_papaya_   (Papaya)   4 3
Medicago_truncatula_   (Barrel medic)   4 4
Phaseolus_vulgaris_v186   (French bean)   4 4
Glycine_max_v109   (Soybean)   7 7
Cucumis_sativus_v122   (Cucumber)   3 3
Fragaria_vesca_   (Wild strawberry)   2 2
Malus_domestica_v196   (Apple)   5 5
Prunus_persica_v139   (Peach)   2 2
Linum_usitatissimum_v200   (Flax)   9 9
Manihot_esculenta_v147   (Cassava)   4 4
Populus_trichocarpa_v156   (Black cottonwood)   5 5
Vitis_vinifera_   (Wine grape)   2 2
Mimulus_guttatus_v140   (Spotted monkey flower)   2 2
Solanum_lycopersicum_v.2.3   (Tomato)   4 4
Solanum_tuberosum_   (Potato)   3 3
Actinidia_chinensis_Hongyang_ 6 6
Aquilegia_coerulea_v195 8 8
Triticum_urartu_22 3 3
Triticum_aestivum_22   (Bread wheat)   9 9
Aegilops_tauschii_22 4 4
Brachypodium_distachyon_   (Stiff brome)   4 4
Oryza_barthii_22   (African wild rice)   5 5
Oryza_meridionalis_22 9 9
Oryza_glumaepatula_22 6 5
Oryza_glaberrima   (African rice)   2 2
Oryza_punctata_22 4 4
Oryza_nivara_22 6 6
Oryza_brachyantha_22   (Malo sina)   4 4
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   3 3
Oryza_sativa_v193   (Rice)   3 3
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   9 7
Panicum_virgatum_v202   (Switchgrass)   9 9
Setaria_italica_v164   (Foxtail millet)   4 4
Zea_mays_subsp._mays_   (Maize)   12 12
Zea_mays_v181   (Maize)   15 15
Sorghum_bicolor_   (Sorghum)   4 4
Musa_balbisiana   (Balbis banana)   8 7
Musa_acuminata_22   (Wild Malaysian banana)   7 7
Amborella_trichopoda_22 2 2
Physcomitrella_patens 5 5
Coccomyxa_subellipsoidea_sp._C-169_v2 2 2
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Chlorella_variabilis_sp._NC64A_ 2 2
Chlorella_vulgaris_ 2 2
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 3 3
Chlamydomonas_reinhardtii_4.0 3 3
Micromonas_sp._RCC299_ 2 2
Micromonas_pusilla_CCMP1545_v3.0 2 2
Bigelowiella_natans_CCMP2755_22 4 4
Cyanophora_paradoxa_ 3 3
Ectocarpus_siliculosus 1 1
Aureococcus_anophagefferens_ 1 1
Albugo_laibachii_22 4 4
Pythium_iwayamai_DAOM_BR242034_22 9 9
Pythium_arrhenomanes_ATCC_12531_22 7 7
Pythium_ultimum_v1.7-2 7 7
Pythium_aphanidermatum_DAOM_BR444_22 7 6
Pythium_irregulare_DAOM_BR486_22 8 7
Pythium_vexans_DAOM_BR484_22 7 7
Phytophthora_ramorum_1.1   (Sudden oak death agent)   7 7
Phytophthora_sojae_1.1 7 7
Phytophthora_infestans_T30-4_ 7 7
Phytophthora_capsici_ 7 6
Hyaloperonospora_arabidopsidis_22 4 4
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Fragilariopsis_cylindrus 1 1
Thalassiosira_pseudonana_CCMP1335 1 1
Perkinsus_marinus_ATCC_50983_ 6 6
Paramecium_tetraurelia_ 14 14
Tetrahymena_thermophila_SB210_1_ 6 6
Ichthyophthirius_multifiliis_strain_G5_ 10 10
Neospora_caninum 1 1
Toxoplasma_gondii_VEG 1 1
Toxoplasma_gondii_ME49 1 1
Toxoplasma_gondii_GT1 1 1
Symbiodinium_minutum_clade_B1_v1.2 1 1
Naegleria_gruberi_ 2 2
Trichomonas_vaginalis_ 1 1
Guillardia_theta_CCMP2712_v1.0_ 5 5
Emiliania_huxleyi_CCMP1516_ 3 3
Bacillus_weihenstephanensis_KBAB4 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   22 22
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2 2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1 1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3 3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2 2
Hordeum_vulgare_22   (Domesticated barley)   13 13
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   4 4
Neospora_caninum_Nc-Liverpool_6.2 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   11 11
Pan_troglodytes_69_2.1.4   (Chimpanzee)   11 11
Gorilla_gorilla_69_3.1   (Western gorilla)   10 10
Pongo_abelii_69_2   (Sumatran orangutan)   10 10
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   7 7
Macaca_mulatta_69_1   (Rhesus monkey)   8 8
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   10 10
Otolemur_garnettii_69_3   (Small-eared galago)   10 10
Microcebus_murinus_69_1   (Gray mouse lemur)   10 9
Rattus_norvegicus_69_3.4   (Norway rat)   14 14
Mus_musculus_69_38   (House mouse)   14 14
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   11 10
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   9 9
Cavia_porcellus_69_3   (Domestic guinea pig)   5 5
Oryctolagus_cuniculus_69_2   (Rabbit)   9 9
Ochotona_princeps_69   (American pika)   8 8
Tupaia_belangeri_69   (Northern tree shrew)   8 7
Sus_scrofa_69_10.2   (Pig)   12 12
Bos_taurus_69_3.1   (Cattle)   18 18
Vicugna_pacos_69_1   (Alpaca)   10 9
Tursiops_truncatus_69_1   (Bottlenose dolphin)   7 7
Mustela_putorius_furo_69_1.0   (Domestic ferret)   9 8
Ailuropoda_melanoleuca_69_1   (Giant panda)   9 9
Canis_familiaris_69_3.1   (Dog)   6 6
Felis_catus_69   (Domestic cat)   6 6
Equus_caballus_69_2   (Horse)   7 7
Myotis_lucifugus_69_2.0   (Little brown bat)   22 22
Pteropus_vampyrus_69_1   (Large flying fox)   6 6
Sorex_araneus_69_1   (European shrew)   7 6
Erinaceus_europaeus_69   (Western European hedgehog)   8 7
Procavia_capensis_69_1   (Cape rock hyrax)   8 8
Loxodonta_africana_69_3   (African savanna elephant)   14 14
Echinops_telfairi_69   (Small Madagascar hedgehog)   8 8
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   10 9
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   9 8
Macropus_eugenii_69_1.0   (Tammar wallaby)   11 11
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   7 7
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   10 10
Ornithorhynchus_anatinus_69_5   (Platypus)   10 10
Petromyzon_marinus_69_7.0   (Sea lamprey)   8 8
Meleagris_gallopavo_69_2   (Turkey)   7 7
Gallus_gallus_69_2   (Chicken)   6 6
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   3 3
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   3 3
Anolis_carolinensis_69_2.0   (Green anole)   5 5
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   12 12
Latimeria_chalumnae_69_1   (Coelacanth)   11 11
Gadus_morhua_69_1   (Atlantic cod)   4 4
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   3 3
Takifugu_rubripes_69_4   (Torafugu)   3 3
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   4 4
Oryzias_latipes_69_1   (Japanese medaka)   3 3
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   3 3
Oreochromis_niloticus_69_1.0   (Nile tilapia)   4 4
Danio_rerio_69_9   (Zebrafish)   12 12
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_69   (Vase tunicate)   2 2
Drosophila_melanogaster_69_5   (Fruit fly)   1 1
Caenorhabditis_elegans_69_215   (Roundworm)   2 2
Arabidopsis_thaliana_10   (Thale cress)   3 3

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   28 28
Homo_sapiens__(NCBI_version)   (Human)   14 14
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   14 14
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   2 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   2 2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
Lotus_japonicus__(Early_assembly) 5 5
Malus_x_domestica_(Duplicate)   (Apple)   5 5
Ricinus_communis__(Early_assembly)   (Castor bean)   3 3
Nicotiana_benthamiana_0.4.4_(Early_draft) 6 6
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   4 4
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   4 4
Phoenix_dactylifera__(Early_draft)   (Date palm)   7 7
PDB_chains_(SCOP_1.75)_(PDB) 1 1
Protein_Data_Bank_(all_PDB_sequenc) 40 40
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 46 46
TargetDB__(Targets) 1 1
STRING_v9.0.5_(STRING) 322 315
Protozoadb_2010_08_(Protozoadb) 8 8
Uniprot_2018_03_genome 3334 3244
NCBI_2017_08_genome 4665 4543

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