SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for Ras GEF superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Ras GEF domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   169 169
Pan_troglodytes_76_2.1.4   (Chimpanzee)   31 31
Gorilla_gorilla_76_3.1   (Western gorilla)   38 38
Pongo_abelii_76_2   (Sumatran orangutan)   30 30
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   31 31
Papio_anubis_76   (Olive baboon)   46 46
Macaca_mulatta_76_1   (Rhesus monkey)   97 97
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   90 89
Otolemur_garnettii_76_3   (Small-eared galago)   31 31
Microcebus_murinus_76_1   (Gray mouse lemur)   29 24
Rattus_norvegicus_76_5.0   (Norway rat)   58 58
Mus_musculus_76_38   (House mouse)   113 113
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   40 31
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   34 34
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   30 29
Cavia_porcellus_76_3   (Domestic guinea pig)   44 44
Oryctolagus_cuniculus_76_2   (Rabbit)   48 45
Ochotona_princeps_76   (American pika)   33 28
Tupaia_belangeri_76   (Northern tree shrew)   54 46
Sus_scrofa_76_10.2   (Pig)   40 40
Bos_taurus_76_3.1   (Cattle)   32 31
Ovis_aries_76_3.1   (Sheep)   40 39
Vicugna_pacos_76_1   (Alpaca)   23 21
Tursiops_truncatus_76_1   (Bottlenose dolphin)   31 29
Mustela_putorius_furo_76_1.0   (Domestic ferret)   38 38
Ailuropoda_melanoleuca_76_1   (Giant panda)   41 41
Canis_familiaris_76_3.1   (Dog)   64 64
Felis_catus_76_6.2   (Domestic cat)   33 33
Equus_caballus_76_2   (Horse)   40 40
Myotis_lucifugus_76_2.0   (Little brown bat)   32 32
Pteropus_vampyrus_76_1   (Large flying fox)   34 29
Sorex_araneus_76_1   (European shrew)   27 23
Erinaceus_europaeus_76   (Western European hedgehog)   27 22
Procavia_capensis_76_1   (Cape rock hyrax)   32 29
Loxodonta_africana_76_3   (African savanna elephant)   47 47
Echinops_telfairi_76   (Small Madagascar hedgehog)   32 28
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   170 156
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   26 22
Macropus_eugenii_76_1.0   (Tammar wallaby)   33 29
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   38 38
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   27 27
Ornithorhynchus_anatinus_76_5   (Platypus)   34 34
Saccoglossus_kowalevskii_v3.0 26 26
Petromyzon_marinus_76_7.0   (Sea lamprey)   8 8
Meleagris_gallopavo_76_2   (Turkey)   25 25
Gallus_gallus_76_4   (Chicken)   23 23
Anas_platyrhynchos_76_1.0   (Mallard)   23 23
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   26 26
Ficedula_albicollis_76_1.0   (Collared flycatcher)   25 25
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   29 29
Anolis_carolinensis_76_2.0   (Green anole)   30 30
Xenopus_laevis_   (African clawed frog)   25 25
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   33 33
Latimeria_chalumnae_76_1   (Coelacanth)   35 34
Lepisosteus_oculatus_76   (Spotted gar)   40 40
Gadus_morhua_76_1   (Atlantic cod)   34 34
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   43 43
Takifugu_rubripes_76_4   (Torafugu)   125 125
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   45 45
Oryzias_latipes_76_1   (Japanese medaka)   47 47
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   33 33
Poecilia_formosa_76   (Amazon molly)   35 35
Oreochromis_niloticus_76_1.0   (Nile tilapia)   53 53
Astyanax_mexicanus_76   (Mexican tetra)   40 40
Danio_rerio_76_9   (Zebrafish)   60 60
Oikopleura_dioica 9 9
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   20 20
Ciona_intestinalis_76   (Vase tunicate)   12 12
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   20 19
Adineta_vaga 47 46
Octopus_bimaculoides_280 19 19
Crassostrea_gigas_22   (Pacific oyster)   12 12
Lottia_gigantea_   (Owl limpet)   14 14
Helobdella_robusta_ 17 17
Capitella_sp._I_ 13 13
Danaus_plexippus_OGS1.0   (Monarch butterfly)   8 8
Heliconius_melpomene_   (Postman butterfly)   12 10
Bombyx_mori_   (Domestic silkworm)   11 11
Nasonia_vitripennis_   (Jewel wasp)   7 7
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   26 26
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   11 11
Linepithema_humile_v1.1   (Argentine ant)   9 9
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   9 9
Solenopsis_invicta_v.2.2.3   (Red fire ant)   10 10
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   10 9
Atta_cephalotes_v1.1 11 10
Camponotus_floridanus_v3.3   (Florida carpenter ant)   15 15
Lucilia_cuprina   (Australian sheep blowfly)   8 8
Drosophila_grimshawi_1.3 11 11
Drosophila_willistoni_1.3 10 10
Drosophila_pseudoobscura_2.13 10 10
Drosophila_persimilis_1.3 10 10
Drosophila_suzukii 9 9
Drosophila_yakuba_1.3 11 11
Drosophila_simulans_1.3 12 12
Drosophila_sechellia_1.3 10 10
Drosophila_melanogaster_76_5   (Fruit fly)   33 33
Drosophila_erecta_1.3 10 10
Drosophila_ananassae_1.3 10 10
Drosophila_virilis_1.2 11 11
Drosophila_mojavensis_1.3 10 10
Megaselia_scalaris_22 4 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   12 12
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   13 13
Anopheles_darlingi_22   (American malaria mosquito)   10 9
Anopheles_gambiae_49_3j   (African malaria mosquito)   10 10
Tribolium_castaneum_3.0   (Red flour beetle)   12 12
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   9 9
Acyrthosiphon_pisum_   (Pea aphid)   10 10
Rhodnius_prolixus_22 11 11
Daphnia_pulex_   (Common water flea)   11 11
Strigamia_maritima_22 11 11
Sarcoptes_scabiei 10 10
Tetranychus_urticae_   (Two-spotted spider mite)   9 9
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   10 10
Pristionchus_pacificus_ 8 8
Meloidogyne_incognita_   (Southern root-knot nematode)   6 5
Meloidogyne_hapla_ 3 3
Onchocerca_volvulus_22 8 8
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   10 10
Caenorhabditis_japonica_ 9 9
Caenorhabditis_brenneri_ 9 9
Caenorhabditis_remanei_ 9 9
Caenorhabditis_elegans_76_235   (Roundworm)   25 25
Caenorhabditis_briggsae_2 7 7
Trichinella_spiralis_22 13 13
Hymenolepis_microstoma_ 9 6
Echinococcus_multilocularis_ 11 8
Echinococcus_granulosus_ 11 8
Taenia_solium_   (Pork tapeworm)   12 9
Schistosoma_mansoni_ 15 11
Mnemiopsis_leidyi   (Sea walnut)   15 14
Thelohanellus_kitauei 4 4
Acropora_digitifera_v1.0 15 15
Nematostella_vectensis_1.0   (Starlet sea anemone)   19 19
Hydra_vulgaris 11 11
Amphimedon_queenslandica 27 26
Trichoplax_adhaerens_ 12 12
Proterospongia_sp._ATCC_50818_ 15 15
Monosiga_brevicollis_ 14 14
Sphaeroforma_arctica_JP610_ 31 31
Capsaspora_owczarzaki_ATCC_30864_ 30 30
Conidiobolus_coronatus_NRRL28638_v1.0 13 13
Mortierella_verticillata_NRRL_6337_ 17 16
Phycomyces_blakesleeanus_ 21 20
Rhizopus_oryzae_RA_99-880_ 33 32
Mucor_circinelloides_ 19 19
Rhizomucor_miehei_CAU432_ 18 17
Malassezia_globosa_CBS_7966_ 10 8
Sporisorium_reilianum_22 6 5
Ustilago_maydis_ 6 5
Mixia_osmundae_IAM_14324_v1.0 4 4
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 4 4
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 4 4
Melampsora_laricis-populina_ 6 6
Rhodotorula_graminis_WP1_v1.0 4 4
Sporobolomyces_roseus_IAM_13481_ 3 3
Microbotryum_violaceum_22 7 6
Wallemia_sebi_v1.0 6 5
Sphaerobolus_stellatus_v1.0 14 13
Piloderma_croceum_F_1598_v1.0 14 13
Serpula_lacrymans_var._lacrymans_S7.9_ 7 7
Coniophora_puteana 9 8
Hydnomerulius_pinastri_v2.0 9 8
Paxillus_rubicundulus_Ve08.2h10_v1.0 9 8
Pisolithus_microcarpus_441_v1.0 8 7
Pisolithus_tinctorius_Marx_270_v1.0 8 7
Scleroderma_citrinum_Foug_A_v1.0 8 7
Coprinopsis_cinerea_okayama7_130_v3 12 11
Pleurotus_ostreatus_   (Oyster mushroom)   7 7
Amanita_thiersii_Skay4041_v1.0 8 7
Amanita_muscaria_Koide_v1.0   (Fly agaric)   7 6
Galerina_marginata_v1.0 11 10
Hebeloma_cylindrosporum_h7_v2.0 10 9
Laccaria_bicolor_S238N-H82_ 6 6
Agaricus_bisporus_var._bisporus_ 8 7
Schizophyllum_commune_ 6 6
Stereum_hirsutum_FP-91666_SS1__v1.0 10 9
Heterobasidion_annosum_ 10 9
Gloeophyllum_trabeumv1.0 10 9
Punctularia_strigosozonata_v1.0 13 12
Sebacina_vermifera_MAFF_305830_v1.0 8 7
Fomitiporia_mediterranea_v1.0 10 9
Tulasnella_calospora_AL13/4D_v1.0 9 8
Postia_placenta_ 11 10
Wolfiporia_cocos_MD-104_SS10__v1.0 8 7
Fomitopsis_pinicolav1.0 8 7
Fomitopsis_pinicola_FP-58527_SS1_v3.0 8 7
Phanerochaete_chrysosporium_RP-78_2.1 8 7
Dichomitus_squalens 8 7
Trametes_versicolor_v1.0 7 6
Tremella_mesenterica_   (Witches' butter)   3 3
Daldinia_eschscholzii_EC12_v1.0 3 3
Apiospora_montagnei_NRRL_25634_v1.0 4 4
Magnaporthe_poae_ATCC_64411_22 4 4
Magnaporthe_grisea_70-15_ 4 4
Podospora_anserina_ 4 4
Sporotrichum_thermophile_ATCC_42464_ 4 4
Thielavia_terrestris_NRRL_8126_ 4 4
Chaetomium_globosum_CBS_148.51_ 4 4
Neurospora_tetrasperma_ 4 4
Neurospora_discreta_FGSC_8579_ 4 4
Neurospora_crassa_OR74A_ 4 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   4 4
Verticillium_albo-atrum_VaMs.102_ 3 3
Verticillium_dahliae_VdLs.17_ 3 3
Acremonium_alcalophilumv_1.0 4 4
Glomerella_graminicola_22 4 4
Fusarium_graminearum_ 4 4
Nectria_haematococca_mpVI_ 4 4
Fusarium_oxysporum_f._sp._lycopersici_4286_ 4 4
Fusarium_verticillioides_7600_ 5 5
Trichoderma_asperellum_CBS_433.97_v1.0 4 4
Trichoderma_atroviride_ 3 3
Trichoderma_citrinoviride_v1.0 4 4
Trichoderma_reesei_1.2 4 4
Trichoderma_virens_Gv29-8_ 4 4
Trichoderma_longibrachiatum_ATCC_18648_v1.0 4 4
Trichoderma_harzianum_CBS_226.95_v1.0 4 4
Amorphotheca_resinae_v1.0   (Creosote fungus)   4 4
Botrytis_cinerea_B05.10_ 5 5
Sclerotinia_sclerotiorum_ 4 4
Blumeria_graminis_22 4 4
Didymella_exigua_CBS_183.55_v1.0 4 4
Leptosphaeria_maculans_22 4 4
Setosphaeria_turcica_v1.0 4 4
Cochliobolus_miyabeanus_ATCC_44560_v1.0 4 4
Cochliobolus_victoriae_FI3_v1.0 4 4
Cochliobolus_carbonum_26-R-13_v1.0 4 4
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   4 4
Alternaria_brassicicola_ 3 3
Cochliobolus_lunatus_m118_v2.0 4 4
Pyrenophora_teres_f._teres_22 4 4
Pyrenophora_tritici-repentis_ 4 4
Stagonospora_nodorum_ 4 4
Mycosphaerella_graminicola_IPO323_ 4 4
Zasmidium_cellare_ATCC_36951_v1.0 4 4
Dothistroma_septosporum 4 4
Septoria_musiva_v1.0 4 4
Mycosphaerella_fijiensis_CIRAD86_ 3 3
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 3 3
Paracoccidioides_brasiliensis_Pb18_ 4 4
Coccidioides_posadasii_RMSCC_3488_ 5 5
Coccidioides_immitis_RS_ 6 6
Ajellomyces_dermatitidis_SLH14081_ 7 7
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 7 7
Microsporum_canis_CBS_113480_ 6 5
Trichophyton_equinum_CBS_127.97_ 5 5
Trichophyton_verrucosum_HKI_0517_ 4 4
Arthroderma_benhamiae_CBS_112371_ 5 5
Trichophyton_tonsurans_CBS_112818_ 6 5
Trichophyton_rubrum_CBS_118892_ 5 5
Uncinocarpus_reesii_1704_ 5 5
Aspergillus_zonatus_v1.0 7 7
Penicillium_chrysogenum_Wisconsin_54-1255_ 9 9
Penicillium_chrysogenum_v1.0 7 7
Aspergillus_acidus_v1.0 7 7
Aspergillus_fumigatus_Af293 4 4
Aspergillus_brasiliensis_v1.0 6 6
Aspergillus_nidulans_FGSC_A4_ 6 6
Aspergillus_sydowii_v1.0 8 8
Aspergillus_versicolor_v1.0 7 7
Aspergillus_glaucus 6 6
Aspergillus_carbonarius_ITEM_5010_ 5 5
Neosartorya_fischeri_NRRL_181_ 5 5
Aspergillus_terreus_NIH2624_ 6 6
Aspergillus_tubingensis_v1.0 6 6
Aspergillus_wentii_v1.0 6 6
Aspergillus_oryzae_RIB40_ 7 7
Aspergillus_niger_22 7 7
Aspergillus_niger_ATCC_1015_ 5 5
Aspergillus_flavus_NRRL3357_ 6 6
Aspergillus_clavatus_NRRL_1_ 5 5
Penicillium_marneffei_ATCC_18224_ 6 6
Tuber_melanosporum_Mel28_22 5 5
Tuber_melanosporum_Vittad_   (Perigord truffle)   5 5
Hansenula_polymorpha_v2.0 6 4
Dekkera_bruxellensis_CBS_2499_v2.0 5 4
Pichia_membranifaciensv1.0 5 4
Candida_tanzawaensis_NRRL_Y-17324__v1.0 5 4
Candida_dubliniensis_CD36_ 5 4
Candida_tropicalis_MYA-3404_ 5 4
Candida_parapsilosis_ 5 4
Candida_albicans_SC5314 6 5
Lodderomyces_elongisporus_NRRL_YB-4239_ 6 4
Babjeviella_inositovora_NRRL_Y-12698_v1.0 5 4
Pichia_stipitis_CBS_6054_ 5 4
Candida_guilliermondii_ATCC_6260_ 5 4
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5 4
Debaromyces_hansenii 5 4
Wickerhamomyces_anomalus 7 5
Pichia_pastoris_GS115_ 6 4
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 3 3
Yarrowia_lipolytica_CLIB122 5 4
Candida_lusitaniae_ATCC_42720_ 6 4
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 6 4
Vanderwaltozyma_polyspora_DSM_70294_ 6 5
Candida_glabrata_CBS138 6 5
Kluyveromyces_thermotolerans_CBS_6340 5 4
Lachancea_kluyveri_ 4 3
Kluyveromyces_waltii 5 4
Ashbya_gossypii_ATCC_10895_ 5 4
Zygosaccharomyces_rouxii_ 5 4
Saccharomyces_mikatae_MIT 6 5
Saccharomyces_paradoxus_MIT 7 6
Saccharomyces_cerevisiae_76   (Baker's yeast)   5 4
Saccharomyces_bayanus_MIT 8 7
Kluyveromyces_lactis 5 4
Schizosaccharomyces_cryophilus_OY26_22 2 2
Schizosaccharomyces_octosporus_yFS286_ 2 2
Schizosaccharomyces_japonicus_yFS275_ 2 2
Schizosaccharomyces_pombe   (Fission yeast)   2 2
Catenaria_anguillulae_PL171_v1.0 10 10
Allomyces_macrogynus_ATCC_38327_ 25 25
Spizellomyces_punctatus_DAOM_BR117_ 15 15
Dictyostelium_discoideum 29 29
Dictyostelium_purpureum_ 30 30
Entamoeba_dispar_1.2 44 44
Entamoeba_invadens_1.2 64 64
Entamoeba_histolytica_1 45 45
Thecamonas_trahens_ATCC_50062_ 69 64
Bigelowiella_natans_CCMP2755_22 7 7
Trypanosoma_cruzi_strain_CL_Brener 4 4
Albugo_laibachii_22 4 4
Pythium_iwayamai_DAOM_BR242034_22 4 4
Pythium_arrhenomanes_ATCC_12531_22 5 5
Pythium_ultimum_v1.7-2 4 4
Pythium_aphanidermatum_DAOM_BR444_22 4 4
Pythium_irregulare_DAOM_BR486_22 4 4
Pythium_vexans_DAOM_BR484_22 4 4
Phytophthora_ramorum_1.1   (Sudden oak death agent)   4 4
Phytophthora_sojae_1.1 4 4
Phytophthora_infestans_T30-4_ 4 4
Phytophthora_capsici_ 4 4
Hyaloperonospora_arabidopsidis_22 3 3
Paramecium_tetraurelia_ 5 5
Tetrahymena_thermophila_SB210_1_ 3 3
Ichthyophthirius_multifiliis_strain_G5_ 1 1
Naegleria_gruberi_ 28 28
Trichomonas_vaginalis_ 20 20
Guillardia_theta_CCMP2712_v1.0_ 1 1
Emiliania_huxleyi_CCMP1516_ 1 1
Waddlia_chondrophila_WSU_86-1044 3 3
Candidatus_Protochlamydia_amoebophila_UWE25 1 1
Parachlamydia_acanthamoebae_UV-7 1 1
Legionella_longbeachae_NSW150 2 2
Legionella_pneumophila_str._Corby 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   47 47
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   28 28
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   12 12
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   10 10
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   16 16
Cryptococcus_neoformans_var._grubii_H99_ 3 3
Cryptococcus_neoformans_B-3501A_ 3 3
Cryptococcus_neoformans_JEC21_ 3 3
Paracoccidioides_brasiliensis_Pb01_ 4 4
Paracoccidioides_brasiliensis_Pb03_ 4 4
Coccidioides_posadasii_str._Silveira_ 5 5
Coccidioides_immitis_RMSCC_3703_ 5 5
Coccidioides_immitis_RMSCC_2394_ 5 5
Coccidioides_immitis_H538.4_ 5 5
Ajellomyces_dermatitidis_ER-3_ 5 5
Histoplasma_capsulatum_H143 5 5
Histoplasma_capsulatum_H88 4 4
Histoplasma_capsulatum_G186AR 4 4
Aspergillus_fumigatus_A1163_ 4 4
Candida_albicans_WO-1_ 6 5
Saccharomyces_cerevisiae_UC5 3 2
Saccharomyces_cerevisiae_PW5 4 3
Saccharomyces_cerevisiae_FL100 1 1
Saccharomyces_cerevisiae_CLIB324 3 2
Saccharomyces_cerevisiae_CBS7960 5 4
Saccharomyces_cerevisiae_YJM269 5 4
Saccharomyces_cerevisiae_T7 4 3
Saccharomyces_cerevisiae_FostersB 4 4
Saccharomyces_cerevisiae_FostersO 4 4
Saccharomyces_cerevisiae_Vin13 2 2
Saccharomyces_cerevisiae_LalvinQA23 3 3
Saccharomyces_cerevisiae_AWRI796 3 3
Saccharomyces_cerevisiae_Sigma1278b 5 4
Saccharomyces_cerevisiae_W303 4 3
Saccharomyces_cerevisiae_JAY291 4 3
Saccharomyces_cerevisiae_AWRI1631 4 3
Saccharomyces_cerevisiae_YPS163 3 3
Saccharomyces_cerevisiae_M22 1 1
Saccharomyces_cerevisiae_CLIB215 5 4
Saccharomyces_cerevisiae_Y10 2 2
Saccharomyces_cerevisiae_YJM789_ 6 5
Saccharomyces_cerevisiae_YJM789 5 4
Saccharomyces_cerevisiae_RM11-1a 5 4
Saccharomyces_cerevisiae_RM11-1a_ 5 4
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   6 5
Schizosaccharomyces_pombe_972h-_ 2 2
Batrachochytrium_dendrobatidis_JEL423_ 14 14
Batrachochytrium_dendrobatidis_JAM81_ 9 9
Legionella_pneumophila_str._Paris 1 1
Legionella_pneumophila_str._Lens 1 1
Legionella_pneumophila_subsp._pneumophila_LPE509 1 1
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 1 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1 1
Legionella_pneumophila_subsp._pneumophila 2 2
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 1 1
Legionella_pneumophila_2300/99_Alcoy 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   35 35
Pan_troglodytes_69_2.1.4   (Chimpanzee)   30 30
Gorilla_gorilla_69_3.1   (Western gorilla)   29 29
Pongo_abelii_69_2   (Sumatran orangutan)   29 29
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   29 29
Macaca_mulatta_69_1   (Rhesus monkey)   43 43
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   30 30
Otolemur_garnettii_69_3   (Small-eared galago)   29 29
Microcebus_murinus_69_1   (Gray mouse lemur)   29 24
Rattus_norvegicus_69_3.4   (Norway rat)   46 46
Mus_musculus_69_38   (House mouse)   44 44
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   40 31
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   31 31
Cavia_porcellus_69_3   (Domestic guinea pig)   39 39
Oryctolagus_cuniculus_69_2   (Rabbit)   45 44
Ochotona_princeps_69   (American pika)   33 28
Tupaia_belangeri_69   (Northern tree shrew)   54 46
Sus_scrofa_69_10.2   (Pig)   38 38
Bos_taurus_69_3.1   (Cattle)   30 29
Vicugna_pacos_69_1   (Alpaca)   23 21
Tursiops_truncatus_69_1   (Bottlenose dolphin)   31 29
Mustela_putorius_furo_69_1.0   (Domestic ferret)   35 35
Ailuropoda_melanoleuca_69_1   (Giant panda)   32 32
Canis_familiaris_69_3.1   (Dog)   46 46
Felis_catus_69   (Domestic cat)   34 25
Equus_caballus_69_2   (Horse)   30 30
Myotis_lucifugus_69_2.0   (Little brown bat)   31 31
Pteropus_vampyrus_69_1   (Large flying fox)   34 29
Sorex_araneus_69_1   (European shrew)   27 23
Erinaceus_europaeus_69   (Western European hedgehog)   27 22
Procavia_capensis_69_1   (Cape rock hyrax)   32 29
Loxodonta_africana_69_3   (African savanna elephant)   36 36
Echinops_telfairi_69   (Small Madagascar hedgehog)   32 28
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   52 43
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   26 22
Macropus_eugenii_69_1.0   (Tammar wallaby)   33 29
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   29 29
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   27 27
Ornithorhynchus_anatinus_69_5   (Platypus)   29 29
Petromyzon_marinus_69_7.0   (Sea lamprey)   8 8
Meleagris_gallopavo_69_2   (Turkey)   24 24
Gallus_gallus_69_2   (Chicken)   22 22
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   26 26
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   26 26
Anolis_carolinensis_69_2.0   (Green anole)   28 28
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   26 26
Latimeria_chalumnae_69_1   (Coelacanth)   30 29
Gadus_morhua_69_1   (Atlantic cod)   34 34
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   34 34
Takifugu_rubripes_69_4   (Torafugu)   33 33
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   36 36
Oryzias_latipes_69_1   (Japanese medaka)   33 33
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   33 33
Oreochromis_niloticus_69_1.0   (Nile tilapia)   37 37
Danio_rerio_69_9   (Zebrafish)   35 35
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   9 9
Ciona_intestinalis_69   (Vase tunicate)   10 10
Drosophila_melanogaster_69_5   (Fruit fly)   10 10
Caenorhabditis_elegans_69_215   (Roundworm)   8 8
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   5 4

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   170 170
Homo_sapiens__(NCBI_version)   (Human)   63 63
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   42 42
Loa_loa_v3.3_(Request)   (Eye worm)   10 10
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   11 11
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   8 8
Moniliophthora_perniciosa_FA553__(Genome_survey) 6 6
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
NCBI_viral_sequences_(Viral) 3 3
Protein_Data_Bank_(all_PDB_sequenc) 75 75
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 119 119
TargetDB__(Targets) 43 43
PDB_chains_(SCOP_1.75)_(PDB) 6 6
Protozoadb_2010_08_(Protozoadb) 225 225
STRING_v9.0.5_(STRING) 1451 1411
Uniprot_2018_03_genome 17240 16804
NCBI_2017_08_genome 25851 25638

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]