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Domain combinations for Nuclear receptor ligand-binding domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Nuclear receptor ligand-binding domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   249 248
Pan_troglodytes_76_2.1.4   (Chimpanzee)   52 52
Gorilla_gorilla_76_3.1   (Western gorilla)   72 72
Pongo_abelii_76_2   (Sumatran orangutan)   51 51
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   57 57
Papio_anubis_76   (Olive baboon)   52 52
Macaca_mulatta_76_1   (Rhesus monkey)   103 102
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   137 137
Otolemur_garnettii_76_3   (Small-eared galago)   51 51
Microcebus_murinus_76_1   (Gray mouse lemur)   49 43
Rattus_norvegicus_76_5.0   (Norway rat)   59 59
Mus_musculus_76_38   (House mouse)   132 132
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   45 43
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   48 48
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   62 59
Cavia_porcellus_76_3   (Domestic guinea pig)   55 54
Oryctolagus_cuniculus_76_2   (Rabbit)   49 49
Ochotona_princeps_76   (American pika)   48 43
Tupaia_belangeri_76   (Northern tree shrew)   50 42
Sus_scrofa_76_10.2   (Pig)   62 62
Bos_taurus_76_3.1   (Cattle)   54 54
Ovis_aries_76_3.1   (Sheep)   51 51
Vicugna_pacos_76_1   (Alpaca)   32 30
Tursiops_truncatus_76_1   (Bottlenose dolphin)   49 48
Mustela_putorius_furo_76_1.0   (Domestic ferret)   50 50
Ailuropoda_melanoleuca_76_1   (Giant panda)   55 55
Canis_familiaris_76_3.1   (Dog)   56 56
Felis_catus_76_6.2   (Domestic cat)   54 54
Equus_caballus_76_2   (Horse)   53 53
Myotis_lucifugus_76_2.0   (Little brown bat)   49 49
Pteropus_vampyrus_76_1   (Large flying fox)   50 49
Sorex_araneus_76_1   (European shrew)   36 32
Erinaceus_europaeus_76   (Western European hedgehog)   51 40
Procavia_capensis_76_1   (Cape rock hyrax)   44 44
Loxodonta_africana_76_3   (African savanna elephant)   66 66
Echinops_telfairi_76   (Small Madagascar hedgehog)   47 44
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   60 60
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   40 37
Macropus_eugenii_76_1.0   (Tammar wallaby)   52 48
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   60 60
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   48 48
Ornithorhynchus_anatinus_76_5   (Platypus)   46 46
Saccoglossus_kowalevskii_v3.0 77 77
Petromyzon_marinus_76_7.0   (Sea lamprey)   32 32
Meleagris_gallopavo_76_2   (Turkey)   49 49
Gallus_gallus_76_4   (Chicken)   49 49
Anas_platyrhynchos_76_1.0   (Mallard)   52 52
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   52 52
Ficedula_albicollis_76_1.0   (Collared flycatcher)   48 48
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   58 58
Anolis_carolinensis_76_2.0   (Green anole)   52 52
Xenopus_laevis_   (African clawed frog)   170 170
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   58 58
Latimeria_chalumnae_76_1   (Coelacanth)   65 65
Lepisosteus_oculatus_76   (Spotted gar)   64 64
Gadus_morhua_76_1   (Atlantic cod)   77 75
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   83 83
Takifugu_rubripes_76_4   (Torafugu)   246 246
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   89 89
Oryzias_latipes_76_1   (Japanese medaka)   80 80
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   73 73
Poecilia_formosa_76   (Amazon molly)   74 73
Oreochromis_niloticus_76_1.0   (Nile tilapia)   94 94
Astyanax_mexicanus_76   (Mexican tetra)   75 74
Danio_rerio_76_9   (Zebrafish)   130 130
Oikopleura_dioica 37 37
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   27 27
Ciona_intestinalis_76   (Vase tunicate)   23 23
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   42 41
Adineta_vaga 139 138
Octopus_bimaculoides_280 38 38
Crassostrea_gigas_22   (Pacific oyster)   43 42
Lottia_gigantea_   (Owl limpet)   31 31
Helobdella_robusta_ 35 35
Capitella_sp._I_ 41 40
Danaus_plexippus_OGS1.0   (Monarch butterfly)   20 20
Heliconius_melpomene_   (Postman butterfly)   18 18
Bombyx_mori_   (Domestic silkworm)   24 23
Nasonia_vitripennis_   (Jewel wasp)   15 15
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   63 63
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   19 19
Linepithema_humile_v1.1   (Argentine ant)   21 21
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   20 20
Solenopsis_invicta_v.2.2.3   (Red fire ant)   20 20
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   20 20
Atta_cephalotes_v1.1 20 20
Camponotus_floridanus_v3.3   (Florida carpenter ant)   20 20
Lucilia_cuprina   (Australian sheep blowfly)   18 18
Drosophila_grimshawi_1.3 19 19
Drosophila_willistoni_1.3 18 18
Drosophila_pseudoobscura_2.13 19 19
Drosophila_persimilis_1.3 20 20
Drosophila_suzukii 23 20
Drosophila_yakuba_1.3 18 18
Drosophila_simulans_1.3 16 16
Drosophila_sechellia_1.3 17 17
Drosophila_melanogaster_76_5   (Fruit fly)   66 66
Drosophila_erecta_1.3 18 18
Drosophila_ananassae_1.3 19 19
Drosophila_virilis_1.2 18 18
Drosophila_mojavensis_1.3 18 18
Megaselia_scalaris_22 11 11
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   22 22
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   23 23
Anopheles_darlingi_22   (American malaria mosquito)   15 15
Anopheles_gambiae_49_3j   (African malaria mosquito)   24 24
Tribolium_castaneum_3.0   (Red flour beetle)   25 25
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   18 18
Acyrthosiphon_pisum_   (Pea aphid)   15 15
Rhodnius_prolixus_22 20 20
Daphnia_pulex_   (Common water flea)   23 23
Strigamia_maritima_22 24 24
Sarcoptes_scabiei 17 17
Tetranychus_urticae_   (Two-spotted spider mite)   46 46
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   20 20
Pristionchus_pacificus_ 185 182
Meloidogyne_incognita_   (Southern root-knot nematode)   116 113
Meloidogyne_hapla_ 52 52
Onchocerca_volvulus_22 27 27
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   60 60
Caenorhabditis_japonica_ 115 113
Caenorhabditis_brenneri_ 293 275
Caenorhabditis_remanei_ 319 312
Caenorhabditis_elegans_76_235   (Roundworm)   438 438
Caenorhabditis_briggsae_2 261 253
Trichinella_spiralis_22 18 17
Hymenolepis_microstoma_ 13 12
Echinococcus_multilocularis_ 16 16
Echinococcus_granulosus_ 16 16
Taenia_solium_   (Pork tapeworm)   14 14
Schistosoma_mansoni_ 22 21
Mnemiopsis_leidyi   (Sea walnut)   3 3
Acropora_digitifera_v1.0 9 9
Nematostella_vectensis_1.0   (Starlet sea anemone)   20 20
Hydra_vulgaris 8 8
Amphimedon_queenslandica 4 4
Trichoplax_adhaerens_ 5 5
Tulasnella_calospora_AL13/4D_v1.0 1 1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1 1
Glycine_max_v109   (Soybean)   1 1
Cucumis_sativus_v122   (Cucumber)   1 1
Mimulus_guttatus_v140   (Spotted monkey flower)   1 1
Aquilegia_coerulea_v195 1 1
Triticum_aestivum_22   (Bread wheat)   2 2
Brachypodium_distachyon_   (Stiff brome)   1 1
Oryza_barthii_22   (African wild rice)   1 1
Oryza_meridionalis_22 2 2
Oryza_glumaepatula_22 2 2
Oryza_glaberrima   (African rice)   1 1
Oryza_punctata_22 2 2
Oryza_nivara_22 1 1
Oryza_brachyantha_22   (Malo sina)   2 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1 1
Oryza_sativa_v193   (Rice)   1 1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1 1
Panicum_virgatum_v202   (Switchgrass)   1 1
Zea_mays_subsp._mays_   (Maize)   1 1
Zea_mays_v181   (Maize)   1 1
Musa_balbisiana   (Balbis banana)   1 1
Musa_acuminata_22   (Wild Malaysian banana)   1 1
Guillardia_theta_CCMP2712_v1.0_ 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   96 96
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   48 48
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   28 28
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   51 50
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   351 351
Hordeum_vulgare_22   (Domesticated barley)   3 3
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   54 53
Pan_troglodytes_69_2.1.4   (Chimpanzee)   46 46
Gorilla_gorilla_69_3.1   (Western gorilla)   50 50
Pongo_abelii_69_2   (Sumatran orangutan)   48 48
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   46 46
Macaca_mulatta_69_1   (Rhesus monkey)   49 48
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   48 48
Otolemur_garnettii_69_3   (Small-eared galago)   49 49
Microcebus_murinus_69_1   (Gray mouse lemur)   49 43
Rattus_norvegicus_69_3.4   (Norway rat)   45 45
Mus_musculus_69_38   (House mouse)   49 49
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   44 42
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   48 48
Cavia_porcellus_69_3   (Domestic guinea pig)   50 49
Oryctolagus_cuniculus_69_2   (Rabbit)   45 45
Ochotona_princeps_69   (American pika)   48 43
Tupaia_belangeri_69   (Northern tree shrew)   50 42
Sus_scrofa_69_10.2   (Pig)   50 50
Bos_taurus_69_3.1   (Cattle)   48 48
Vicugna_pacos_69_1   (Alpaca)   31 29
Tursiops_truncatus_69_1   (Bottlenose dolphin)   48 47
Mustela_putorius_furo_69_1.0   (Domestic ferret)   50 50
Ailuropoda_melanoleuca_69_1   (Giant panda)   50 50
Canis_familiaris_69_3.1   (Dog)   47 47
Felis_catus_69   (Domestic cat)   46 42
Equus_caballus_69_2   (Horse)   48 48
Myotis_lucifugus_69_2.0   (Little brown bat)   48 48
Pteropus_vampyrus_69_1   (Large flying fox)   49 48
Sorex_araneus_69_1   (European shrew)   36 32
Erinaceus_europaeus_69   (Western European hedgehog)   51 40
Procavia_capensis_69_1   (Cape rock hyrax)   43 43
Loxodonta_africana_69_3   (African savanna elephant)   50 50
Echinops_telfairi_69   (Small Madagascar hedgehog)   47 44
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   41 37
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   39 36
Macropus_eugenii_69_1.0   (Tammar wallaby)   51 47
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   49 49
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   46 46
Ornithorhynchus_anatinus_69_5   (Platypus)   43 43
Petromyzon_marinus_69_7.0   (Sea lamprey)   30 30
Meleagris_gallopavo_69_2   (Turkey)   39 39
Gallus_gallus_69_2   (Chicken)   41 41
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   52 52
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   49 49
Anolis_carolinensis_69_2.0   (Green anole)   49 49
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   52 52
Latimeria_chalumnae_69_1   (Coelacanth)   54 54
Gadus_morhua_69_1   (Atlantic cod)   73 71
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   71 71
Takifugu_rubripes_69_4   (Torafugu)   74 74
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   69 69
Oryzias_latipes_69_1   (Japanese medaka)   66 66
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   73 73
Oreochromis_niloticus_69_1.0   (Nile tilapia)   74 74
Danio_rerio_69_9   (Zebrafish)   76 76
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   16 16
Ciona_intestinalis_69   (Vase tunicate)   19 19
Drosophila_melanogaster_69_5   (Fruit fly)   18 18
Caenorhabditis_elegans_69_215   (Roundworm)   279 279

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   263 262
Homo_sapiens__(NCBI_version)   (Human)   139 139
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   49 49
Heliconius_numata__(Incomplete) 3 3
Loa_loa_v3.3_(Request)   (Eye worm)   30 30
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   31 31
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   28 28
Lotus_japonicus__(Early_assembly) 1 1
UniProt__viral_sequences_(Viral) 4 4
Protein_Data_Bank_(all_PDB_sequenc) 2195 2195
STRING_v9.0.5_(STRING) 2974 2924
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 4711 4711
PDB_chains_(SCOP_1.75)_(PDB) 148 148
Uniprot_2018_03_genome 25823 25490
NCBI_2017_08_genome 36298 36211
TargetDB__(Targets) 240 239

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