SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Tetraspanin superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Tetraspanin domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   134 134
Pan_troglodytes_76_2.1.4   (Chimpanzee)   31 31
Gorilla_gorilla_76_3.1   (Western gorilla)   41 41
Pongo_abelii_76_2   (Sumatran orangutan)   31 31
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   29 29
Papio_anubis_76   (Olive baboon)   36 36
Macaca_mulatta_76_1   (Rhesus monkey)   42 42
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   57 57
Otolemur_garnettii_76_3   (Small-eared galago)   30 30
Microcebus_murinus_76_1   (Gray mouse lemur)   19 19
Rattus_norvegicus_76_5.0   (Norway rat)   35 35
Mus_musculus_76_38   (House mouse)   68 68
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   22 22
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   30 30
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   30 30
Cavia_porcellus_76_3   (Domestic guinea pig)   31 31
Oryctolagus_cuniculus_76_2   (Rabbit)   26 26
Ochotona_princeps_76   (American pika)   21 21
Tupaia_belangeri_76   (Northern tree shrew)   15 15
Sus_scrofa_76_10.2   (Pig)   43 43
Bos_taurus_76_3.1   (Cattle)   34 34
Ovis_aries_76_3.1   (Sheep)   33 33
Vicugna_pacos_76_1   (Alpaca)   9 9
Tursiops_truncatus_76_1   (Bottlenose dolphin)   23 23
Mustela_putorius_furo_76_1.0   (Domestic ferret)   29 29
Ailuropoda_melanoleuca_76_1   (Giant panda)   31 31
Canis_familiaris_76_3.1   (Dog)   38 38
Felis_catus_76_6.2   (Domestic cat)   32 32
Equus_caballus_76_2   (Horse)   30 30
Myotis_lucifugus_76_2.0   (Little brown bat)   27 27
Pteropus_vampyrus_76_1   (Large flying fox)   25 25
Sorex_araneus_76_1   (European shrew)   13 13
Erinaceus_europaeus_76   (Western European hedgehog)   18 18
Procavia_capensis_76_1   (Cape rock hyrax)   22 22
Loxodonta_africana_76_3   (African savanna elephant)   32 32
Echinops_telfairi_76   (Small Madagascar hedgehog)   19 19
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   37 37
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   9 9
Macropus_eugenii_76_1.0   (Tammar wallaby)   26 26
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   35 35
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   36 36
Ornithorhynchus_anatinus_76_5   (Platypus)   27 27
Saccoglossus_kowalevskii_v3.0 37 37
Petromyzon_marinus_76_7.0   (Sea lamprey)   20 20
Meleagris_gallopavo_76_2   (Turkey)   25 25
Gallus_gallus_76_4   (Chicken)   28 28
Anas_platyrhynchos_76_1.0   (Mallard)   26 26
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   26 26
Ficedula_albicollis_76_1.0   (Collared flycatcher)   29 29
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   36 36
Anolis_carolinensis_76_2.0   (Green anole)   35 35
Xenopus_laevis_   (African clawed frog)   106 106
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   40 40
Latimeria_chalumnae_76_1   (Coelacanth)   49 49
Lepisosteus_oculatus_76   (Spotted gar)   45 45
Gadus_morhua_76_1   (Atlantic cod)   39 39
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   49 49
Takifugu_rubripes_76_4   (Torafugu)   79 79
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   65 65
Oryzias_latipes_76_1   (Japanese medaka)   61 61
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   56 56
Poecilia_formosa_76   (Amazon molly)   60 60
Oreochromis_niloticus_76_1.0   (Nile tilapia)   71 71
Astyanax_mexicanus_76   (Mexican tetra)   46 46
Danio_rerio_76_9   (Zebrafish)   77 77
Oikopleura_dioica 16 16
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   23 23
Ciona_intestinalis_76   (Vase tunicate)   26 26
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   25 24
Adineta_vaga 46 46
Octopus_bimaculoides_280 28 28
Crassostrea_gigas_22   (Pacific oyster)   42 41
Lottia_gigantea_   (Owl limpet)   35 35
Helobdella_robusta_ 60 58
Capitella_sp._I_ 43 43
Danaus_plexippus_OGS1.0   (Monarch butterfly)   28 28
Heliconius_melpomene_   (Postman butterfly)   22 20
Bombyx_mori_   (Domestic silkworm)   19 19
Nasonia_vitripennis_   (Jewel wasp)   12 12
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   36 36
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   20 20
Linepithema_humile_v1.1   (Argentine ant)   20 20
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   17 17
Solenopsis_invicta_v.2.2.3   (Red fire ant)   15 14
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   17 17
Atta_cephalotes_v1.1 19 18
Camponotus_floridanus_v3.3   (Florida carpenter ant)   18 18
Lucilia_cuprina   (Australian sheep blowfly)   31 27
Drosophila_grimshawi_1.3 42 42
Drosophila_willistoni_1.3 35 35
Drosophila_pseudoobscura_2.13 36 36
Drosophila_persimilis_1.3 33 33
Drosophila_suzukii 38 29
Drosophila_yakuba_1.3 36 36
Drosophila_simulans_1.3 33 33
Drosophila_sechellia_1.3 40 40
Drosophila_melanogaster_76_5   (Fruit fly)   63 63
Drosophila_erecta_1.3 36 36
Drosophila_ananassae_1.3 37 37
Drosophila_virilis_1.2 37 37
Drosophila_mojavensis_1.3 35 35
Megaselia_scalaris_22 18 18
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   30 30
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   16 16
Anopheles_darlingi_22   (American malaria mosquito)   13 13
Anopheles_gambiae_49_3j   (African malaria mosquito)   20 20
Tribolium_castaneum_3.0   (Red flour beetle)   35 32
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   18 18
Acyrthosiphon_pisum_   (Pea aphid)   8 8
Rhodnius_prolixus_22 20 20
Daphnia_pulex_   (Common water flea)   17 17
Strigamia_maritima_22 17 15
Sarcoptes_scabiei 13 13
Tetranychus_urticae_   (Two-spotted spider mite)   22 22
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   19 19
Pristionchus_pacificus_ 10 10
Meloidogyne_incognita_   (Southern root-knot nematode)   6 6
Meloidogyne_hapla_ 6 6
Onchocerca_volvulus_22 12 12
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   18 16
Caenorhabditis_japonica_ 14 13
Caenorhabditis_brenneri_ 20 20
Caenorhabditis_remanei_ 17 16
Caenorhabditis_elegans_76_235   (Roundworm)   23 23
Caenorhabditis_briggsae_2 14 14
Trichinella_spiralis_22 18 18
Hymenolepis_microstoma_ 32 32
Echinococcus_multilocularis_ 35 35
Echinococcus_granulosus_ 33 33
Taenia_solium_   (Pork tapeworm)   28 28
Schistosoma_mansoni_ 41 39
Mnemiopsis_leidyi   (Sea walnut)   26 25
Thelohanellus_kitauei 26 26
Acropora_digitifera_v1.0 14 14
Nematostella_vectensis_1.0   (Starlet sea anemone)   28 28
Hydra_vulgaris 14 14
Amphimedon_queenslandica 21 21
Trichoplax_adhaerens_ 16 16
Capsaspora_owczarzaki_ATCC_30864_ 3 3
Conidiobolus_coronatus_NRRL28638_v1.0 2 2
Mortierella_verticillata_NRRL_6337_ 2 2
Phycomyces_blakesleeanus_ 2 2
Rhizopus_oryzae_RA_99-880_ 1 1
Mucor_circinelloides_ 3 3
Rhizomucor_miehei_CAU432_ 1 1
Piloderma_croceum_F_1598_v1.0 1 1
Hydnomerulius_pinastri_v2.0 1 1
Agaricus_bisporus_var._bisporus_ 1 1
Gloeophyllum_trabeumv1.0 1 1
Daldinia_eschscholzii_EC12_v1.0 1 1
Thielavia_terrestris_NRRL_8126_ 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1 1
Acremonium_alcalophilumv_1.0 1 1
Glomerella_graminicola_22 1 1
Fusarium_graminearum_ 1 1
Nectria_haematococca_mpVI_ 1 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1 1
Fusarium_verticillioides_7600_ 1 1
Trichoderma_asperellum_CBS_433.97_v1.0 2 2
Trichoderma_atroviride_ 2 2
Trichoderma_citrinoviride_v1.0 2 2
Trichoderma_reesei_1.2 1 1
Trichoderma_virens_Gv29-8_ 1 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1 1
Trichoderma_harzianum_CBS_226.95_v1.0 1 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   2 2
Botrytis_cinerea_B05.10_ 2 2
Sclerotinia_sclerotiorum_ 2 2
Didymella_exigua_CBS_183.55_v1.0 1 1
Leptosphaeria_maculans_22 2 2
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1 1
Cochliobolus_victoriae_FI3_v1.0 1 1
Cochliobolus_carbonum_26-R-13_v1.0 1 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1 1
Alternaria_brassicicola_ 1 1
Cochliobolus_lunatus_m118_v2.0 1 1
Pyrenophora_teres_f._teres_22 2 2
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 1 1
Zasmidium_cellare_ATCC_36951_v1.0 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Coccidioides_posadasii_RMSCC_3488_ 1 1
Coccidioides_immitis_RS_ 1 1
Ajellomyces_dermatitidis_SLH14081_ 1 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Uncinocarpus_reesii_1704_ 2 2
Aspergillus_sydowii_v1.0 1 1
Aspergillus_versicolor_v1.0 1 1
Aspergillus_glaucus 1 1
Aspergillus_wentii_v1.0 1 1
Aspergillus_oryzae_RIB40_ 1 1
Aspergillus_clavatus_NRRL_1_ 1 1
Penicillium_marneffei_ATCC_18224_ 1 1
Catenaria_anguillulae_PL171_v1.0 2 2
Allomyces_macrogynus_ATCC_38327_ 3 3
Dictyostelium_purpureum_ 2 2
Entamoeba_invadens_1.2 1 1
Thecamonas_trahens_ATCC_50062_ 4 4
Bigelowiella_natans_CCMP2755_22 1 1
Trichomonas_vaginalis_ 10 10

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   82 82
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   54 54
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   21 21
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   12 12
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   20 20
Coccidioides_posadasii_str._Silveira_ 1 1
Coccidioides_immitis_RMSCC_2394_ 1 1
Coccidioides_immitis_H538.4_ 1 1
Ajellomyces_dermatitidis_ER-3_ 1 1
Histoplasma_capsulatum_H143 1 1
Histoplasma_capsulatum_H88 1 1
Histoplasma_capsulatum_G186AR 1 1
Aspergillus_fumigatus_A1163_ 1 1
Batrachochytrium_dendrobatidis_JEL423_ 1 1
Batrachochytrium_dendrobatidis_JAM81_ 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   33 33
Pan_troglodytes_69_2.1.4   (Chimpanzee)   29 29
Gorilla_gorilla_69_3.1   (Western gorilla)   31 31
Pongo_abelii_69_2   (Sumatran orangutan)   30 30
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   28 28
Macaca_mulatta_69_1   (Rhesus monkey)   30 30
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   27 27
Otolemur_garnettii_69_3   (Small-eared galago)   30 30
Microcebus_murinus_69_1   (Gray mouse lemur)   19 19
Rattus_norvegicus_69_3.4   (Norway rat)   28 28
Mus_musculus_69_38   (House mouse)   31 31
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   22 22
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   29 29
Cavia_porcellus_69_3   (Domestic guinea pig)   31 31
Oryctolagus_cuniculus_69_2   (Rabbit)   25 25
Ochotona_princeps_69   (American pika)   21 21
Tupaia_belangeri_69   (Northern tree shrew)   15 15
Sus_scrofa_69_10.2   (Pig)   26 26
Bos_taurus_69_3.1   (Cattle)   32 32
Vicugna_pacos_69_1   (Alpaca)   9 9
Tursiops_truncatus_69_1   (Bottlenose dolphin)   23 23
Mustela_putorius_furo_69_1.0   (Domestic ferret)   29 29
Ailuropoda_melanoleuca_69_1   (Giant panda)   30 30
Canis_familiaris_69_3.1   (Dog)   30 30
Felis_catus_69   (Domestic cat)   24 24
Equus_caballus_69_2   (Horse)   30 30
Myotis_lucifugus_69_2.0   (Little brown bat)   25 25
Pteropus_vampyrus_69_1   (Large flying fox)   25 25
Sorex_araneus_69_1   (European shrew)   13 13
Erinaceus_europaeus_69   (Western European hedgehog)   18 18
Procavia_capensis_69_1   (Cape rock hyrax)   22 22
Loxodonta_africana_69_3   (African savanna elephant)   27 27
Echinops_telfairi_69   (Small Madagascar hedgehog)   19 19
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   17 17
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   9 9
Macropus_eugenii_69_1.0   (Tammar wallaby)   26 26
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   28 28
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   34 34
Ornithorhynchus_anatinus_69_5   (Platypus)   25 25
Petromyzon_marinus_69_7.0   (Sea lamprey)   19 19
Meleagris_gallopavo_69_2   (Turkey)   24 24
Gallus_gallus_69_2   (Chicken)   26 26
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   26 26
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   28 28
Anolis_carolinensis_69_2.0   (Green anole)   33 33
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   35 35
Latimeria_chalumnae_69_1   (Coelacanth)   40 40
Gadus_morhua_69_1   (Atlantic cod)   39 39
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   46 46
Takifugu_rubripes_69_4   (Torafugu)   49 49
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   50 50
Oryzias_latipes_69_1   (Japanese medaka)   48 48
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   56 56
Oreochromis_niloticus_69_1.0   (Nile tilapia)   58 58
Danio_rerio_69_9   (Zebrafish)   51 51
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   17 17
Ciona_intestinalis_69   (Vase tunicate)   25 25
Drosophila_melanogaster_69_5   (Fruit fly)   37 37
Caenorhabditis_elegans_69_215   (Roundworm)   17 17

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   131 131
Homo_sapiens__(NCBI_version)   (Human)   50 50
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   30 30
Heliconius_numata__(Incomplete) 8 8
Loa_loa_v3.3_(Request)   (Eye worm)   13 13
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   12 12
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   10 10
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 100 100
PDB_chains_(SCOP_1.75)_(PDB) 1 1
STRING_v9.0.5_(STRING) 1525 1520
Uniprot_2018_03_genome 13037 12908
NCBI_2017_08_genome 18580 18553
Protozoadb_2010_08_(Protozoadb) 20 20
Protein_Data_Bank_(all_PDB_sequenc) 35 35
TargetDB__(Targets) 11 11

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