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Domain combinations for PKD domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a PKD domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   103 41
Pan_troglodytes_76_2.1.4   (Chimpanzee)   16 8
Gorilla_gorilla_76_3.1   (Western gorilla)   37 18
Pongo_abelii_76_2   (Sumatran orangutan)   31 11
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   30 11
Papio_anubis_76   (Olive baboon)   33 12
Macaca_mulatta_76_1   (Rhesus monkey)   30 14
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   49 22
Otolemur_garnettii_76_3   (Small-eared galago)   33 11
Microcebus_murinus_76_1   (Gray mouse lemur)   26 9
Rattus_norvegicus_76_5.0   (Norway rat)   32 10
Mus_musculus_76_38   (House mouse)   55 22
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   22 9
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   28 11
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   32 11
Cavia_porcellus_76_3   (Domestic guinea pig)   32 11
Oryctolagus_cuniculus_76_2   (Rabbit)   35 12
Ochotona_princeps_76   (American pika)   21 8
Tupaia_belangeri_76   (Northern tree shrew)   19 10
Sus_scrofa_76_10.2   (Pig)   34 13
Bos_taurus_76_3.1   (Cattle)   30 11
Ovis_aries_76_3.1   (Sheep)   36 12
Vicugna_pacos_76_1   (Alpaca)   12 6
Tursiops_truncatus_76_1   (Bottlenose dolphin)   29 10
Mustela_putorius_furo_76_1.0   (Domestic ferret)   31 11
Ailuropoda_melanoleuca_76_1   (Giant panda)   31 10
Canis_familiaris_76_3.1   (Dog)   40 16
Felis_catus_76_6.2   (Domestic cat)   29 11
Equus_caballus_76_2   (Horse)   44 13
Myotis_lucifugus_76_2.0   (Little brown bat)   24 8
Pteropus_vampyrus_76_1   (Large flying fox)   25 10
Sorex_araneus_76_1   (European shrew)   8 5
Erinaceus_europaeus_76   (Western European hedgehog)   22 8
Procavia_capensis_76_1   (Cape rock hyrax)   22 9
Loxodonta_africana_76_3   (African savanna elephant)   35 13
Echinops_telfairi_76   (Small Madagascar hedgehog)   16 8
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   29 12
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   9 6
Macropus_eugenii_76_1.0   (Tammar wallaby)   22 8
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   34 15
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   33 11
Ornithorhynchus_anatinus_76_5   (Platypus)   18 9
Saccoglossus_kowalevskii_v3.0 49 12
Petromyzon_marinus_76_7.0   (Sea lamprey)   14 8
Meleagris_gallopavo_76_2   (Turkey)   34 13
Gallus_gallus_76_4   (Chicken)   30 10
Anas_platyrhynchos_76_1.0   (Mallard)   27 9
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   30 9
Ficedula_albicollis_76_1.0   (Collared flycatcher)   28 9
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   47 16
Anolis_carolinensis_76_2.0   (Green anole)   31 10
Xenopus_laevis_   (African clawed frog)   19 8
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   38 12
Latimeria_chalumnae_76_1   (Coelacanth)   44 13
Lepisosteus_oculatus_76   (Spotted gar)   75 22
Gadus_morhua_76_1   (Atlantic cod)   31 15
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   60 21
Takifugu_rubripes_76_4   (Torafugu)   111 40
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   34 17
Oryzias_latipes_76_1   (Japanese medaka)   29 13
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   34 16
Poecilia_formosa_76   (Amazon molly)   22 15
Oreochromis_niloticus_76_1.0   (Nile tilapia)   47 20
Astyanax_mexicanus_76   (Mexican tetra)   38 19
Danio_rerio_76_9   (Zebrafish)   56 22
Oikopleura_dioica 2 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   2 1
Ciona_intestinalis_76   (Vase tunicate)   13 2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   52 14
Adineta_vaga 2 1
Octopus_bimaculoides_280 17 5
Crassostrea_gigas_22   (Pacific oyster)   31 12
Lottia_gigantea_   (Owl limpet)   24 8
Helobdella_robusta_ 4 1
Capitella_sp._I_ 19 6
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4 1
Heliconius_melpomene_   (Postman butterfly)   2 1
Bombyx_mori_   (Domestic silkworm)   3 1
Nasonia_vitripennis_   (Jewel wasp)   4 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   4 1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   4 1
Linepithema_humile_v1.1   (Argentine ant)   2 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   4 1
Atta_cephalotes_v1.1 3 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3 1
Lucilia_cuprina   (Australian sheep blowfly)   5 2
Drosophila_grimshawi_1.3 4 1
Drosophila_willistoni_1.3 4 1
Drosophila_pseudoobscura_2.13 4 1
Drosophila_persimilis_1.3 4 1
Drosophila_suzukii 4 1
Drosophila_yakuba_1.3 4 1
Drosophila_simulans_1.3 4 1
Drosophila_sechellia_1.3 5 2
Drosophila_melanogaster_76_5   (Fruit fly)   4 1
Drosophila_erecta_1.3 4 1
Drosophila_ananassae_1.3 4 1
Drosophila_virilis_1.2 4 1
Drosophila_mojavensis_1.3 5 1
Megaselia_scalaris_22 3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   4 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   5 1
Tribolium_castaneum_3.0   (Red flour beetle)   4 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   4 1
Acyrthosiphon_pisum_   (Pea aphid)   4 1
Rhodnius_prolixus_22 4 1
Daphnia_pulex_   (Common water flea)   3 1
Strigamia_maritima_22 5 2
Sarcoptes_scabiei 2 1
Tetranychus_urticae_   (Two-spotted spider mite)   2 2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   7 4
Onchocerca_volvulus_22 2 2
Echinococcus_multilocularis_ 2 2
Schistosoma_mansoni_ 2 1
Mnemiopsis_leidyi   (Sea walnut)   6 3
Acropora_digitifera_v1.0 61 20
Nematostella_vectensis_1.0   (Starlet sea anemone)   22 7
Hydra_vulgaris 13 7
Amphimedon_queenslandica 7 6
Trichoplax_adhaerens_ 5 2
Proterospongia_sp._ATCC_50818_ 5 5
Monosiga_brevicollis_ 7 6
Sphaeroforma_arctica_JP610_ 2 1
Capsaspora_owczarzaki_ATCC_30864_ 10 7
Verticillium_albo-atrum_VaMs.102_ 1 1
Nectria_haematococca_mpVI_ 1 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3 3
Aspergillus_wentii_v1.0 1 1
Catenaria_anguillulae_PL171_v1.0 4 4
Porphyridium_purpureum_02_2012 6 6
Thecamonas_trahens_ATCC_50062_ 2 2
Cyanophora_paradoxa_ 20 18
Ectocarpus_siliculosus 2 2
Aureococcus_anophagefferens_ 2 2
Phytophthora_capsici_ 1 1
Fragilariopsis_cylindrus 14 14
Naegleria_gruberi_ 1 1
Thermobaculum_terrenum_ATCC_BAA-798 1 1
Acaryochloris_marina_MBIC11017 2 2
Microcoleus_sp._PCC_7113 1 1
Cyanothece_sp._PCC_8802 1 1
Gloeobacter_violaceus_PCC_7421 2 2
Rivularia_sp._PCC_7116 1 1
Nostoc_sp._PCC_7524 15 6
Conexibacter_woesei_DSM_14684 11 11
Slackia_heliotrinireducens_DSM_20476 2 2
Ilumatobacter_coccineus 1 1
Nakamurella_multipartita_DSM_44233 4 1
Modestobacter_marinus 4 2
Blastococcus_saxobsidens_DD2 4 2
Geodermatophilus_obscurus_DSM_43160 1 1
Kineococcus_radiotolerans_SRS30216 2 2
Catenulispora_acidiphila_DSM_44928 21 17
Stackebrandtia_nassauensis_DSM_44728 4 4
Frankia_symbiont_of_Datisca_glomerata 1 1
Frankia_sp._EAN1pec 7 5
Frankia_alni_ACN14a 3 3
Thermobifida_fusca_YX 1 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1 1
Thermomonospora_curvata_DSM_43183 1 1
Streptosporangium_roseum_DSM_43021 8 6
Kitasatospora_setae_KM-6054 1 1
Streptomyces_coelicolor_A3(2) 3 3
Streptomyces_sp._PAMC26508 3 3
Streptomyces_flavogriseus_ATCC_33331 3 3
Streptomyces_sp._SirexAA-E 1 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 5 4
Streptomyces_bingchenggensis_BCW-1 2 2
Streptomyces_violaceusniger_Tu_4113 2 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_scabiei_87.22 4 4
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1 1
Actinosynnema_mirum_DSM_43827 1 1
Saccharomonospora_viridis_DSM_43017 4 4
Saccharopolyspora_erythraea_NRRL_2338 1 1
Amycolatopsis_mediterranei_U32 2 2
Kribbella_flavida_DSM_17836 11 6
Nocardioides_sp._JS614 4 2
Propionibacterium_propionicum_F0230a 1 1
Propionibacterium_acnes_SK137 3 3
Verrucosispora_maris_AB-18-032 8 6
Micromonospora_sp._L5 5 5
Micromonospora_aurantiaca_ATCC_27029 3 3
Actinoplanes_sp._N902-109 6 4
Actinoplanes_sp._SE50/110 6 5
Actinoplanes_missouriensis_431 12 9
Rhodococcus_erythropolis_PR4 1 1
Mycobacterium_sp._JLS 1 1
Tropheryma_whipplei_TW08/27 1 1
Beutenbergia_cavernae_DSM_12333 2 1
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 6 1
Jonesia_denitrificans_DSM_20603 3 3
Intrasporangium_calvum_DSM_43043 1 1
Brachybacterium_faecium_DSM_4810 5 2
Isoptericola_variabilis_225 11 8
Xylanimonas_cellulosilytica_DSM_15894 2 2
Cellulomonas_flavigena_DSM_20109 9 6
Cellulomonas_fimi_ATCC_484 10 6
[Cellvibrio]_gilvus_ATCC_13127 4 3
Arthrobacter_phenanthrenivorans_Sphe3 1 1
Arthrobacter_arilaitensis_Re117 4 2
Arthrobacter_sp._FB24 1 1
Micrococcus_luteus_NCTC_2665 1 1
Bifidobacterium_bifidum_S17 2 2
Arcanobacterium_haemolyticum_DSM_20595 3 3
Mobiluncus_curtisii_ATCC_43063 1 1
Actinomyces_sp._F0330 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 11 2
Anaerolinea_thermophila_UNI-1 3 1
Sphaerobacter_thermophilus_DSM_20745 3 2
Herpetosiphon_aurantiacus_DSM_785 4 4
Roseiflexus_sp._RS-1 4 2
Roseiflexus_castenholzii_DSM_13941 4 2
Chloroflexus_sp._MS-G 1 1
Chloroflexus_sp._Y-400-fl 2 2
Chloroflexus_aurantiacus_J-10-fl 2 2
Truepera_radiovictrix_DSM_17093 15 10
Deinococcus_gobiensis_I-0 4 4
Deinococcus_deserti_VCD115 4 4
Deinococcus_maricopensis_DSM_21211 5 4
Deinococcus_geothermalis_DSM_11300 7 5
Deinococcus_proteolyticus_MRP 3 3
Deinococcus_radiodurans_R1 2 2
Oceanithermus_profundus_DSM_14977 6 4
Marinithermus_hydrothermalis_DSM_14884 2 2
Meiothermus_silvanus_DSM_9946 4 2
Meiothermus_ruber_DSM_1279 1 1
Thermus_sp._CCB_US3_UF1 2 2
Symbiobacterium_thermophilum_IAM_14863 2 1
Clostridium_clariflavum_DSM_19732 4 4
Clostridium_cellulolyticum_H10 7 6
Clostridium_thermocellum_ATCC_27405 3 2
Ruminococcus_bromii 2 2
Thermaerobacter_marianensis_DSM_12885 1 1
Oscillibacter_valericigenes_Sjm18-20 2 1
Candidatus_Desulforudis_audaxviator_MP104C 1 1
Syntrophobotulus_glycolicus_DSM_8271 2 1
Desulfitobacterium_hafniense_Y51 3 2
Desulfotomaculum_kuznetsovii_DSM_6115 1 1
Acetobacterium_woodii_DSM_1030 3 1
Clostridium_saccharolyticum_WM1 1 1
Clostridium_phytofermentans_ISDg 1 1
Clostridium_lentocellum_DSM_5427 6 5
Coprococcus_sp._ART55/1 1 1
Heliobacterium_modesticaldum_Ice1 2 1
Candidatus_Arthromitus_sp._SFB-mouse-Japan 1 1
Clostridium_sp._BNL1100 5 5
Clostridium_perfringens_ATCC_13124 2 2
Clostridium_botulinum_A_str._ATCC_3502 1 1
Thermosediminibacter_oceani_DSM_16646 4 1
Caldicellulosiruptor_kronotskyensis_2002 1 1
Caldicellulosiruptor_hydrothermalis_108 1 1
Caldicellulosiruptor_saccharolyticus_DSM_8903 2 1
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 4 2
Moorella_thermoacetica_ATCC_39073 1 1
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 5 3
Enterococcus_hirae_ATCC_9790 1 1
Lactobacillus_plantarum_JDM1 1 1
Streptococcus_pasteurianus_ATCC_43144 1 1
Streptococcus_macedonicus_ACA-DC_198 1 1
Brevibacillus_brevis_NBRC_100599 1 1
Paenibacillus_sp._JDR-2 5 3
Paenibacillus_terrae_HPL-003 4 3
Paenibacillus_mucilaginosus_3016 4 3
Paenibacillus_polymyxa_M1 3 2
Listeria_welshimeri_serovar_6b_str._SLCC5334 2 2
Listeria_innocua_Clip11262 3 3
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 21 9
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 5 4
Listeria_ivanovii_subsp._ivanovii_PAM_55 2 2
Lysinibacillus_sphaericus_C3-41 1 1
Bacillus_halodurans_C-125 1 1
Bacillus_weihenstephanensis_KBAB4 2 2
Bacillus_thuringiensis_str._Al_Hakam 2 2
Bacillus_cereus_03BB102 2 2
Bacillus_anthracis_str._A0248 3 3
Bacillus_cellulosilyticus_DSM_2522 2 2
Candidatus_Cloacamonas_acidaminovorans 2 2
Gemmatimonas_aurantiaca_T-27 1 1
Melioribacter_roseus_P3M 1 1
Ignavibacterium_album_JCM_16511 1 1
Chloroherpeton_thalassium_ATCC_35110 9 1
Haliscomenobacter_hydrossis_DSM_1100 41 25
Saprospira_grandis_str._Lewin 33 14
Niastella_koreensis_GR20-10 104 33
Chitinophaga_pinensis_DSM_2588 96 28
Salinibacter_ruber_M8 13 8
Rhodothermus_marinus_DSM_4252 4 2
Flexibacter_litoralis_DSM_6794 23 11
Belliella_baltica_DSM_15883 3 3
Cyclobacterium_marinum_DSM_745 12 10
Marivirga_tractuosa_DSM_4126 54 17
Fibrella_aestuarina 15 13
Leadbetterella_byssophila_DSM_17132 7 4
Dyadobacter_fermentans_DSM_18053 13 11
Cytophaga_hutchinsonii_ATCC_33406 58 31
Spirosoma_linguale_DSM_74 22 20
Runella_slithyformis_DSM_19594 18 14
Parabacteroides_distasonis_ATCC_8503 1 1
Paludibacter_propionicigenes_WB4 8 5
Odoribacter_splanchnicus_DSM_20712 15 6
Prevotella_melaninogenica_ATCC_25845 2 2
Prevotella_intermedia_17 3 2
Prevotella_denticola_F0289 1 1
Porphyromonas_asaccharolytica_DSM_20707 1 1
Porphyromonas_gingivalis_ATCC_33277 3 1
Alistipes_finegoldii_DSM_17242 8 5
Bacteroides_salanitronis_DSM_18170 2 1
Bacteroides_helcogenes_P_36-108 1 1
Bacteroides_thetaiotaomicron_VPI-5482 2 2
Bacteroides_fragilis_YCH46 4 2
Pedobacter_saltans_DSM_12145 7 4
Solitalea_canadensis_DSM_3403 28 6
Pedobacter_heparinus_DSM_2366 34 6
Sphingobacterium_sp._21 3 3
Fluviicola_taffensis_DSM_16823 98 49
Owenweeksia_hongkongensis_DSM_17368 98 46
Zunongwangia_profunda_SM-A87 4 3
Krokinobacter_sp._4H-3-7-5 1 1
Gramella_forsetii_KT0803 8 6
Lacinutrix_sp._5H-3-7-4 7 6
Maribacter_sp._HTCC2170 16 7
Robiginitalea_biformata_HTCC2501 15 7
Croceibacter_atlanticus_HTCC2559 3 3
Aequorivita_sublithincola_DSM_14238 2 2
Zobellia_galactanivorans 26 13
Muricauda_ruestringensis_DSM_13258 24 11
Cellulophaga_algicola_DSM_14237 17 11
Cellulophaga_lytica_DSM_7489 8 6
Polaribacter_sp._MED152 10 8
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 5 3
Ornithobacterium_rhinotracheale_DSM_15997 5 3
Capnocytophaga_canimorsus_Cc5 3 1
Capnocytophaga_ochracea_DSM_7271 3 1
Weeksella_virosa_DSM_16922 1 1
Flavobacterium_indicum_GPTSA100-9 5 4
Flavobacterium_psychrophilum_JIP02/86 3 2
Flavobacterium_branchiophilum_FL-15 3 2
Flavobacterium_columnare_ATCC_49512 4 3
Flavobacterium_johnsoniae_UW101 26 12
Candidatus_Protochlamydia_amoebophila_UWE25 1 1
Isosphaera_pallida_ATCC_43644 4 4
Rhodopirellula_baltica_SH_1 5 2
Coraliomargarita_akajimensis_DSM_45221 6 4
Opitutus_terrae_PB90-1 1 1
Spirochaeta_smaragdinae_DSM_11293 1 1
Sphaerochaeta_pleomorpha_str._Grapes 2 2
Spirochaeta_africana_DSM_8902 4 4
Desulfurispirillum_indicum_S5 5 2
Fervidobacterium_nodosum_Rt17-B1 1 1
Thermosipho_melanesiensis_BI429 1 1
Thermosipho_africanus_TCF52B 1 1
Thermovibrio_ammonificans_HB-1 3 1
Persephonella_marina_EX-H1 6 2
Caldisericum_exile_AZM16c01 1 1
Candidatus_Chloracidobacterium_thermophilum_B 2 1
Candidatus_Solibacter_usitatus_Ellin6076 11 6
Granulicella_tundricola_MP5ACTX9 7 3
Granulicella_mallensis_MP5ACTX8 3 3
Candidatus_Koribacter_versatilis_Ellin345 2 2
Terriglobus_saanensis_SP1PR4 4 3
Terriglobus_roseus_DSM_18391 2 2
Acidobacterium_capsulatum_ATCC_51196 1 1
Candidatus_Nitrospira_defluvii 1 1
Candidatus_Methylomirabilis_oxyfera 1 1
candidate_division_SR1_bacterium_RAAC1_SR1_1 8 4
Candidatus_Saccharimonas_aalborgensis 1 1
Acidithiobacillus_ferrooxidans_ATCC_53993 1 1
Bacteriovorax_marinus_SJ 5 2
Bdellovibrio_bacteriovorus_HD100 2 1
Nitratifractor_salsuginis_DSM_16511 2 2
Sulfurovum_sp._NBC37-1 1 1
Syntrophus_aciditrophicus_SB 6 2
Desulfomonile_tiedjei_DSM_6799 2 1
Syntrophobacter_fumaroxidans_MPOB 1 1
Desulfobulbus_propionicus_DSM_2032 5 3
Desulfatibacillum_alkenivorans_AK-01 16 4
Desulfococcus_oleovorans_Hxd3 1 1
Desulfomicrobium_baculatum_DSM_4028 1 1
Desulfovibrio_africanus_str._Walvis_Bay 7 3
Geobacter_daltonii_FRC-32 3 3
Geobacter_sp._M21 14 3
Geobacter_uraniireducens_Rf4 12 4
Geobacter_lovleyi_SZ 1 1
Geobacter_bemidjiensis_Bem 12 1
Geobacter_sulfurreducens_KN400 3 3
Geobacter_metallireducens_GS-15 2 2
Babela_massiliensis 5 2
Haliangium_ochraceum_DSM_14365 4 4
Sorangium_cellulosum_'So_ce_56' 1 1
Anaeromyxobacter_sp._Fw109-5 3 2
Anaeromyxobacter_dehalogenans_2CP-1 6 4
Stigmatella_aurantiaca_DW4/3-1 24 21
Corallococcus_coralloides_DSM_2259 21 17
Myxococcus_xanthus_DK_1622 8 7
Myxococcus_fulvus_HW-1 4 4
Methylibium_petroleiphilum_PM1 1 1
Burkholderia_phymatum_STM815 1 1
Burkholderia_xenovorans_LB400 3 2
Ralstonia_pickettii_12D 1 1
Burkholderia_ambifaria_AMMD 3 2
Burkholderia_gladioli_BSR3 1 1
Variovorax_paradoxus_S110 1 1
Hirschia_baltica_ATCC_49814 1 1
Hyphomonas_neptunium_ATCC_15444 1 1
Dinoroseobacter_shibae_DFL_12 2 2
Ruegeria_pomeroyi_DSS-3 13 1
Roseobacter_litoralis_Och_149 1 1
Roseobacter_denitrificans_OCh_114 1 1
Rhodospirillum_photometricum_DSM_122 4 1
Polymorphum_gilvum_SL003B-26A1 15 1
Candidatus_Puniceispirillum_marinum_IMCC1322 1 1
Saccharophagus_degradans_2-40 9 6
Teredinibacter_turnerae_T7901 14 7
Cellvibrio_japonicus_Ueda107 9 6
Aeromonas_salmonicida_subsp._salmonicida_A449 2 2
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 2 2
Vibrio_fischeri_MJ11 2 1
Vibrio_sp._Ex25 3 3
Vibrio_harveyi_ATCC_BAA-1116 2 2
Vibrio_parahaemolyticus_RIMD_2210633 3 3
Vibrio_splendidus_LGP32 3 2
Vibrio_anguillarum_775 5 3
Vibrio_furnissii_NCTC_11218 3 2
Vibrio_vulnificus_MO6-24/O 3 2
Vibrio_cholerae_O395 4 2
Photobacterium_profundum_SS9 1 1
Psychromonas_ingrahamii_37 2 1
Idiomarina_loihiensis_L2TR 1 1
Ferrimonas_balearica_DSM_9799 2 2
Shewanella_piezotolerans_WP3 14 7
Shewanella_loihica_PV-4 4 3
Shewanella_halifaxensis_HAW-EB4 3 2
Shewanella_sediminis_HAW-EB3 7 4
Shewanella_denitrificans_OS217 9 6
Shewanella_pealeana_ATCC_700345 2 1
Shewanella_oneidensis_MR-1 5 3
Shewanella_baltica_OS185 5 4
Shewanella_woodyi_ATCC_51908 16 11
Shewanella_sp._MR-4 5 3
Shewanella_amazonensis_SB2B 8 7
Shewanella_violacea_DSS12 17 11
Shewanella_frigidimarina_NCIMB_400 3 2
Shewanella_putrefaciens_CN-32 4 3
Colwellia_psychrerythraea_34H 4 4
Pseudoalteromonas_sp._SM9913 2 2
Pseudoalteromonas_atlantica_T6c 4 1
Pseudoalteromonas_haloplanktis_TAC125 1 1
Glaciecola_sp._4H-3-7+YE-5 3 1
Glaciecola_nitratireducens_FR1064 4 1
Alteromonas_sp._SN2 2 2
Alteromonas_macleodii_str._'Deep_ecotype' 9 3
Kangiella_koreensis_DSM_16069 6 4
Hahella_chejuensis_KCTC_2396 7 6
Marinomonas_mediterranea_MMB-1 1 1
Methylomicrobium_alcaliphilum 2 1
Methylomonas_methanica_MC09 5 3
Methylococcus_capsulatus_str._Bath 5 4
Rhodanobacter_denitrificans 1 1
Pseudoxanthomonas_spadix_BD-a59 1 1
Stenotrophomonas_maltophilia_K279a 1 1
Halothiobacillus_neapolitanus_c2 1 1
Alkalilimnicola_ehrlichii_MLHE-1 1 1
Nitrosococcus_watsonii_C-113 1 1
Nitrosococcus_oceani_ATCC_19707 1 1
Rahnella_sp._Y9602 4 3
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 3 3
Yersinia_pseudotuberculosis_IP_31758 1 1
Yersinia_pestis_Pestoides_F 1 1
Dickeya_dadantii_Ech703 1 1
Cronobacter_turicensis_z3032 1 1
Cronobacter_sakazakii_ES15 1 1
Salmonella_bongori_NCTC_12419 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1 1
Klebsiella_oxytoca_E718 1 1
Enterobacter_aerogenes_KCTC_2190 1 1
Enterobacter_asburiae_LF7a 2 2
Enterobacter_cloacae_subsp._dissolvens_SDM 2 2
Citrobacter_koseri_ATCC_BAA-895 2 2
Nanoarchaeum_equitans_Kin4-M 1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 9 4
Acidilobus_saccharovorans_345-15 1 1
Aeropyrum_pernix_K1 2 1
Desulfurococcus_fermentans_DSM_16532 1 1
Desulfurococcus_mucosus_DSM_2162 1 1
Metallosphaera_cuprina_Ar-4 1 1
Metallosphaera_sedula_DSM_5348 3 2
Acidianus_hospitalis_W1 1 1
Sulfolobus_tokodaii_str._7 1 1
Sulfolobus_islandicus_Y.N.15.51 1 1
Sulfolobus_solfataricus_P2 1 1
Sulfolobus_acidocaldarius_DSM_639 3 2
halophilic_archaeon_DL31 2 2
Methanocella_arvoryzae_MRE50 4 3
Methanocella_conradii_HZ254 17 3
Methanocella_paludicola_SANAE 3 2
Methanosaeta_harundinacea_6Ac 8 4
Methanosaeta_concilii_GP6 1 1
Methanosalsum_zhilinae_DSM_4017 9 6
Methanohalobium_evestigatum_Z-7303 3 2
Methanococcoides_burtonii_DSM_6242 6 3
Methanosarcina_acetivorans_C2A 232 58
Methanosarcina_mazei_Go1 69 25
Methanosarcina_barkeri_str._Fusaro 244 60
Methanohalophilus_mahii_DSM_5219 7 6
Methanosphaerula_palustris_E1-9c 150 34
Methanoregula_boonei_6A8 48 11
Methanospirillum_hungatei_JF-1 150 40
Methanocorpusculum_labreanum_Z 4 3
Methanoplanus_petrolearius_DSM_11571 43 13
Methanoculleus_bourgensis_MS2 19 10
Methanoculleus_marisnigri_JR1 10 4
Ferroglobus_placidus_DSM_10642 2 2
Archaeoglobus_profundus_DSM_5631 1 1
Archaeoglobus_veneficus_SNP6 2 2
Archaeoglobus_fulgidus_DSM_4304 3 2
Thermococcus_sp._4557 3 1
Thermococcus_gammatolerans_EJ3 2 1
Thermococcus_barophilus_MP 3 1
Pyrococcus_sp._ST04 2 1
Pyrococcus_horikoshii_OT3 2 1
Pyrococcus_furiosus_COM1 1 1
Thermoplasmatales_archaeon_BRNA1 3 3
Salinarchaeum_sp._Harcht-Bsk1 26 11
Halopiger_xanaduensis_SH-6 2 1
Haloterrigena_turkmenica_DSM_5511 2 2
Natrinema_sp._J7-2 6 6
Natrialba_magadii_ATCC_43099 2 2
Halorubrum_lacusprofundi_ATCC_49239 6 1
Halogeometricum_borinquense_DSM_11551 9 9
Haloferax_mediterranei_ATCC_33500 7 6
Haloferax_volcanii_DS2 1 1
Halomicrobium_mukohataei_DSM_12286 16 10
Halorhabdus_utahensis_DSM_12940 15 10
Natronomonas_pharaonis_DSM_2160 4 3
Haloarcula_hispanica_ATCC_33960 4 4
Haloarcula_marismortui_ATCC_43049 3 3
Halobacterium_salinarum_R1 4 4
Halobacterium_sp._NRC-1 4 4
Methanotorris_igneus_Kol_5 5 3
Methanocaldococcus_sp._FS406-22 6 1
Methanocaldococcus_fervens_AG86 7 2
Methanocaldococcus_vulcanius_M7 6 1
methanocaldococcus_infernus_ME 6 2
Methanocaldococcus_jannaschii_DSM_2661 5 1
Methanothermococcus_okinawensis_IH1 10 4
Methanococcus_aeolicus_Nankai-3 2 2
Methanococcus_voltae_A3 2 2
Methanococcus_vannielii_SB 1 1
Methanothermobacter_marburgensis_str._Marburg 4 4
Methanothermobacter_thermautotrophicus_str._Delta_H 5 4
Aciduliprofundum_sp._MAR08-339 2 2
Aciduliprofundum_boonei_T469 5 3

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   28 11
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   8 2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   5 1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2 1
Synechococcus_sp._JA-2-3B'a(2-13) 1 1
Crinalium_epipsammum_PCC_9333 1 1
Cyanothece_sp._PCC_7822 13 2
Cyanothece_sp._ATCC_51142 1 1
Cyanothece_sp._PCC_8801 1 1
Stanieria_cyanosphaera_PCC_7437 14 1
Anabaena_cylindrica_PCC_7122 7 2
Frankia_sp._EuI1c 22 11
Frankia_sp._CcI3 1 1
Nocardiopsis_alba_ATCC_BAA-2165 1 1
Streptomyces_albus_J1074 2 2
Streptomyces_rapamycinicus_NRRL_5491 1 1
Streptomyces_davawensis_JCM_4913 7 7
Streptomyces_fulvissimus_DSM_40593 5 4
Streptomyces_venezuelae_ATCC_10712 1 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1 1
Saccharothrix_espanaensis_DSM_44229 2 2
Amycolatopsis_mediterranei_RB 2 2
Amycolatopsis_mediterranei_S699 2 2
Amycolatopsis_mediterranei_S699 2 2
Amycolatopsis_orientalis_HCCB10007 6 6
Propionibacterium_avidum_44067 1 1
Propionibacterium_acnes_ATCC_11828 2 2
Propionibacterium_acnes_TypeIA2_P.acn31 2 2
Propionibacterium_acnes_TypeIA2_P.acn17 3 3
Propionibacterium_acnes_TypeIA2_P.acn33 3 3
Propionibacterium_acnes_C1 3 3
Propionibacterium_acnes_6609 1 1
Propionibacterium_acnes_266 3 3
Propionibacterium_acnes_KPA171202 3 3
Propionibacterium_acidipropionici_ATCC_4875 6 3
Actinoplanes_friuliensis_DSM_7358 13 12
Mycobacterium_sp._KMS 1 1
Mycobacterium_sp._MCS 1 1
Tropheryma_whipplei_str._Twist 1 1
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 4 2
Bifidobacterium_longum_NCC2705 1 1
Bifidobacterium_longum_DJO10A 1 1
Bifidobacterium_breve_UCC2003 1 1
Bifidobacterium_bifidum_PRL2010 2 2
Bifidobacterium_bifidum_BGN4 2 2
Chthonomonas_calidirosea_T49 1 1
Deinococcus_peraridilitoris_DSM_19664 6 6
Thermus_thermophilus_JL-18 1 1
Clostridium_thermocellum_DSM_1313 3 2
Ruminococcus_champanellensis_18P13 1 1
Desulfitobacterium_dichloroeliminans_LMG_P-21439 3 3
Desulfotomaculum_gibsoniae_DSM_7213 2 2
Roseburia_intestinalis_XB6B4 1 1
Candidatus_Arthromitus_sp._SFB-rat-Yit 1 1
Candidatus_Arthromitus_sp._SFB-mouse-Yit 1 1
Clostridium_perfringens_SM101 2 2
Clostridium_perfringens_str._13 2 2
Clostridium_botulinum_H04402_065 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_E3_str._Alaska_E43 1 1
Clostridium_botulinum_B1_str._Okra 1 1
Clostridium_botulinum_Ba4_str._657 1 1
Clostridium_botulinum_A2_str._Kyoto 1 1
Clostridium_botulinum_A3_str._Loch_Maree 1 1
Clostridium_botulinum_A_str._Hall 1 1
Clostridium_botulinum_A_str._ATCC_19397 1 1
Thermacetogenium_phaeum_DSM_12270 3 2
Carnobacterium_maltaromaticum_LMA28 1 1
Enterococcus_mundtii_QU_25 1 1
Enterococcus_casseliflavus_EC20 1 1
Lactobacillus_plantarum_16 1 1
Lactobacillus_plantarum_ZJ316 1 1
Lactobacillus_plantarum_subsp._plantarum_ST-III 1 1
Lactobacillus_plantarum_subsp._plantarum_P-8 1 1
Lactobacillus_plantarum_WCFS1 1 1
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 1 1
Lactococcus_lactis_subsp._lactis_IO-1 1 1
Lactococcus_lactis_subsp._lactis_CV56 1 1
Lactococcus_lactis_subsp._lactis_KF147 1 1
Lactococcus_lactis_subsp._lactis_Il1403 1 1
Lactococcus_lactis_subsp._cremoris_KW2 1 1
Thermobacillus_composti_KWC4 3 2
Paenibacillus_sp._Y412MC10 3 3
Paenibacillus_mucilaginosus_KNP414 4 3
Paenibacillus_mucilaginosus_K02 4 3
Paenibacillus_larvae_subsp._larvae_DSM_25430 1 1
Paenibacillus_polymyxa_CR1 4 3
Paenibacillus_polymyxa_SC2 3 2
Paenibacillus_polymyxa_E681 3 2
Listeria_monocytogenes_EGD_sequence 5 4
Listeria_monocytogenes_N53-1 6 6
Listeria_monocytogenes_La111 5 5
Listeria_monocytogenes_serotype_4b_str._LL195 4 3
Listeria_monocytogenes_07PF0776 5 4
Listeria_monocytogenes_M7 6 5
Listeria_monocytogenes_J1-220 4 3
Listeria_monocytogenes_J1816 4 3
Listeria_monocytogenes_SLCC2376 7 6
Listeria_monocytogenes_SLCC5850 5 4
Listeria_monocytogenes_ATCC_19117 4 3
Listeria_monocytogenes_L312 5 4
Listeria_monocytogenes_SLCC2479 6 5
Listeria_monocytogenes_SLCC7179 8 6
Listeria_monocytogenes_SLCC2540 4 3
Listeria_monocytogenes_SLCC2378 4 3
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 4 3
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 7 6
Listeria_monocytogenes_serotype_7_str._SLCC2482 4 3
Listeria_monocytogenes_08-5578 5 4
Listeria_monocytogenes_08-5923 5 4
Listeria_monocytogenes_L99 6 5
Listeria_monocytogenes_HCC23 6 5
Listeria_monocytogenes_10403S 5 4
Listeria_monocytogenes_J0161 6 5
Listeria_monocytogenes_Finland_1998 5 4
Listeria_monocytogenes_FSL_R2-561 6 5
Listeria_monocytogenes_serotype_4b_str._F2365 4 3
Listeria_monocytogenes_EGD-e 6 5
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 1 1
Bacillus_toyonensis_BCT-7112 2 2
Bacillus_thuringiensis_HD-771 2 2
Bacillus_thuringiensis_HD-789 2 2
Bacillus_thuringiensis_MC28 2 2
Bacillus_thuringiensis_serovar_chinensis_CT-43 2 2
Bacillus_thuringiensis_YBT-1518 3 3
Bacillus_thuringiensis_Bt407 3 3
Bacillus_thuringiensis_serovar_konkukian_str._97-27 2 2
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 3 3
Bacillus_thuringiensis_BMB171 3 3
Bacillus_thuringiensis_serovar_finitimus_YBT-020 2 2
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 4 4
Bacillus_cereus_FRI-35 2 2
Bacillus_cereus_biovar_anthracis_str._CI 2 2
Bacillus_cereus_AH820 2 2
Bacillus_cereus_AH187 2 2
Bacillus_cereus_B4264 2 2
Bacillus_cereus_G9842 2 2
Bacillus_cereus_Q1 2 2
Bacillus_cereus_F837/76 2 2
Bacillus_cereus_NC7401 2 2
Bacillus_cereus_E33L 3 3
Bacillus_cereus_ATCC_14579 4 4
Bacillus_cereus_ATCC_10987 2 2
Bacillus_anthracis_str._H9401 3 3
Bacillus_anthracis_str._CDC_684 3 3
Bacillus_anthracis_str._'Ames_Ancestor' 3 3
Bacillus_anthracis_str._Sterne 3 3
Bacillus_anthracis_str._Ames 3 3
Salinibacter_ruber_DSM_13855 9 7
Rhodothermus_marinus_SG0.5JP17-172 5 3
Echinicola_vietnamensis_DSM_17526 9 3
Emticicia_oligotrophica_DSM_17448 10 8
Prevotella_sp._oral_taxon_299_str._F0039 1 1
Prevotella_dentalis_DSM_3688 1 1
Porphyromonas_gingivalis_TDC60 3 1
Porphyromonas_gingivalis_W83 3 1
Alistipes_shahii_WAL_8301 6 4
Bacteroides_xylanisolvens_XB1A 10 8
Bacteroides_fragilis_638R 3 2
Bacteroides_fragilis_NCTC_9343 2 1
Nonlabens_dokdonensis_DSW-6 16 12
Psychroflexus_torquis_ATCC_700755 4 4
Riemerella_anatipestifer_RA-CH-2 6 4
Riemerella_anatipestifer_RA-CH-1 6 4
Riemerella_anatipestifer_RA-GD 3 2
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 5 3
Singulisphaera_acidiphila_DSM_18658 20 5
Treponema_pedis_str._T_A4 1 1
Acidithiobacillus_ferrooxidans_ATCC_23270 1 1
Bdellovibrio_exovorus_JSS 2 1
Bdellovibrio_bacteriovorus_str._Tiberius 3 2
Geobacter_sp._M18 4 4
Geobacter_sulfurreducens_PCA 3 3
Sorangium_cellulosum_So0157-2 3 3
Anaeromyxobacter_sp._K 6 4
Anaeromyxobacter_dehalogenans_2CP-C 4 2
Myxococcus_stipitatus_DSM_14675 12 11
Ralstonia_pickettii_12J 1 1
Burkholderia_sp._CCGE1003 1 1
Variovorax_paradoxus_B4 2 2
Variovorax_paradoxus_EPS 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 6 5
Aeromonas_hydrophila_ML09-119 2 2
Vibrio_fischeri_ES114 2 1
Vibrio_sp._EJY3 4 4
Vibrio_parahaemolyticus_BB22OP 3 3
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 3 3
Vibrio_anguillarum_Listonella_anguillarum_M3 5 3
Vibrio_nigripulchritudo_VibrioScope 9 8
Vibrio_vulnificus_CMCP6 2 2
Vibrio_vulnificus_YJ016 5 3
Vibrio_cholerae_LMA3984-4 4 2
Vibrio_cholerae_M66-2 4 2
Vibrio_cholerae_O395 4 2
Vibrio_cholerae_IEC224 4 2
Vibrio_cholerae_O1_str._2010EL-1786 4 2
Vibrio_cholerae_MJ-1236 4 2
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 4 2
Idiomarina_loihiensis_GSL_199 1 1
Shewanella_sp._W3-18-1 4 3
Shewanella_sp._ANA-3 6 5
Shewanella_baltica_BA175 6 5
Shewanella_baltica_OS678 5 4
Shewanella_baltica_OS117 6 5
Shewanella_baltica_OS223 4 3
Shewanella_baltica_OS195 5 4
Shewanella_baltica_OS155 6 5
Shewanella_sp._MR-7 5 3
Shewanella_putrefaciens_200 3 2
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 8 4
Alteromonas_macleodii_str._'Ionian_Sea_U8' 4 2
Alteromonas_macleodii_str._'Ionian_Sea_U7' 4 2
Alteromonas_macleodii_str._'Ionian_Sea_U4' 4 2
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1 1
Alteromonas_macleodii_AltDE1 8 4
Alteromonas_macleodii_str._'English_Channel_673' 2 2
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 2 2
Alteromonas_macleodii_str._'Black_Sea_11' 2 2
Alteromonas_macleodii_ATCC_27126 2 2
Alcanivorax_dieselolei_B5 10 2
Thalassolituus_oleivorans_MIL-1 1 1
Stenotrophomonas_maltophilia_D457 1 1
Stenotrophomonas_maltophilia_JV3 1 1
Thioalkalivibrio_nitratireducens_DSM_14787 1 1
Thioflavicoccus_mobilis_8321 8 4
Rahnella_aquatilis_HX2 4 3
Yersinia_pseudotuberculosis_PB1/+ 1 1
Yersinia_pseudotuberculosis_YPIII 1 1
Yersinia_pseudotuberculosis_IP_32953 1 1
Yersinia_pestis_biovar_Microtus_str._91001 1 1
Yersinia_pestis_A1122 1 1
Yersinia_pestis_Z176003 1 1
Yersinia_pestis_D182038 1 1
Yersinia_pestis_D106004 1 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 1 1
Yersinia_pestis_Nepal516 1 1
Yersinia_pestis_Antiqua 1 1
Yersinia_pestis_Angola 1 1
Yersinia_pestis_CO92 1 1
Yersinia_pestis_KIM10+ 1 1
Cronobacter_sakazakii_CMCC_45402 1 1
Cronobacter_sakazakii_SP291 1 1
Cronobacter_sakazakii_ATCC_BAA-894 1 1
Salmonella_bongori_N268-08 1 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 1 1
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1 1
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 1 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 1 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 1 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 1 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 1 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1 1
Klebsiella_oxytoca_KCTC_1686 1 1
Enterobacter_aerogenes_EA1509E 1 1
Enterobacter_cloacae_SCF1 1 1
Enterobacter_cloacae_EcWSU1 1 1
Enterobacter_cloacae_subsp._cloacae_ENHKU01 1 1
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 2 2
Acinetobacter_johnsonii__SH046 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Caldisphaera_lagunensis_DSM_15908 6 6
Sulfolobus_islandicus_LAL14/1 1 1
Sulfolobus_islandicus_REY15A 1 1
Sulfolobus_islandicus_HVE10/4 1 1
Sulfolobus_islandicus_Y.G.57.14 1 1
Sulfolobus_islandicus_L.S.2.15 1 1
Sulfolobus_islandicus_M.16.27 1 1
Sulfolobus_islandicus_M.14.25 1 1
Sulfolobus_islandicus_M.16.4 1 1
Sulfolobus_islandicus_L.D.8.5 1 1
Sulfolobus_acidocaldarius_SUSAZ 2 1
Sulfolobus_acidocaldarius_Ron12/I 3 2
Sulfolobus_acidocaldarius_N8 3 2
Methanomethylovorans_hollandica_DSM_15978 32 12
Methanolobus_psychrophilus_R15 24 10
Methanosarcina_mazei_Tuc01 61 20
Methanoregula_formicica_Methanoregula_formicicum_SMSP 51 11
Archaeoglobus_sulfaticallidus_PM70-1 6 4
Thermococcus_sp._AM4 1 1
Thermococcus_litoralis_DSM_5473 3 1
Pyrococcus_furiosus_DSM_3638 1 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 6 6
Halovivax_ruber_XH-70 6 6
Natrinema_pellirubrum_DSM_15624 2 2
Natronobacterium_gregoryi_SP2 1 1
Haloquadratum_walsbyi_C23 2 1
Halorhabdus_tiamatea_SARL4B 9 5
Natronomonas_moolapensis_8.8.11 9 5
Haloarcula_hispanica_N601 4 4
Methanococcus_maripaludis_X1 1 1
Methanobacterium_sp._SWAN-1 5 4

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   35 13
Pan_troglodytes_69_2.1.4   (Chimpanzee)   16 8
Gorilla_gorilla_69_3.1   (Western gorilla)   30 12
Pongo_abelii_69_2   (Sumatran orangutan)   31 11
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   29 10
Macaca_mulatta_69_1   (Rhesus monkey)   26 11
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   30 9
Otolemur_garnettii_69_3   (Small-eared galago)   33 11
Microcebus_murinus_69_1   (Gray mouse lemur)   26 9
Rattus_norvegicus_69_3.4   (Norway rat)   31 10
Mus_musculus_69_38   (House mouse)   34 12
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   22 9
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   28 11
Cavia_porcellus_69_3   (Domestic guinea pig)   32 11
Oryctolagus_cuniculus_69_2   (Rabbit)   24 11
Ochotona_princeps_69   (American pika)   21 8
Tupaia_belangeri_69   (Northern tree shrew)   19 10
Sus_scrofa_69_10.2   (Pig)   24 8
Bos_taurus_69_3.1   (Cattle)   29 10
Vicugna_pacos_69_1   (Alpaca)   12 6
Tursiops_truncatus_69_1   (Bottlenose dolphin)   29 10
Mustela_putorius_furo_69_1.0   (Domestic ferret)   31 11
Ailuropoda_melanoleuca_69_1   (Giant panda)   31 10
Canis_familiaris_69_3.1   (Dog)   30 11
Felis_catus_69   (Domestic cat)   21 9
Equus_caballus_69_2   (Horse)   31 11
Myotis_lucifugus_69_2.0   (Little brown bat)   23 7
Pteropus_vampyrus_69_1   (Large flying fox)   25 10
Sorex_araneus_69_1   (European shrew)   8 5
Erinaceus_europaeus_69   (Western European hedgehog)   22 8
Procavia_capensis_69_1   (Cape rock hyrax)   22 9
Loxodonta_africana_69_3   (African savanna elephant)   29 10
Echinops_telfairi_69   (Small Madagascar hedgehog)   16 8
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   10 5
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   9 6
Macropus_eugenii_69_1.0   (Tammar wallaby)   22 8
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   28 10
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   29 10
Ornithorhynchus_anatinus_69_5   (Platypus)   18 9
Petromyzon_marinus_69_7.0   (Sea lamprey)   10 5
Meleagris_gallopavo_69_2   (Turkey)   31 11
Gallus_gallus_69_2   (Chicken)   31 10
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   30 9
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   40 11
Anolis_carolinensis_69_2.0   (Green anole)   31 10
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   34 9
Latimeria_chalumnae_69_1   (Coelacanth)   43 12
Gadus_morhua_69_1   (Atlantic cod)   29 14
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   36 15
Takifugu_rubripes_69_4   (Torafugu)   37 15
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   28 13
Oryzias_latipes_69_1   (Japanese medaka)   28 12
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   34 16
Oreochromis_niloticus_69_1.0   (Nile tilapia)   40 15
Danio_rerio_69_9   (Zebrafish)   38 16
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2 1
Ciona_intestinalis_69   (Vase tunicate)   13 2
Drosophila_melanogaster_69_5   (Fruit fly)   4 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   112 49
Homo_sapiens__(NCBI_version)   (Human)   78 26
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   34 12
Loa_loa_v3.3_(Request)   (Eye worm)   1 1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 2 2
NCBI_plasmid_sequences_(Plasmids) 102 50
Protein_Data_Bank_(all_PDB_sequenc) 41 41
PDB_chains_(SCOP_1.75)_(PDB) 3 3
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 70 70
TargetDB__(Targets) 431 139
UniProt__viral_sequences_(Viral) 6 6
STRING_v9.0.5_(STRING) 2950 1269
NCBI_viral_sequences_(Viral) 6 6
Uniprot_2018_03_genome 67501 36235
NCBI_2017_08_genome 83460 51834

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