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Domain combinations for Transglutaminase, two C-terminal domains superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Transglutaminase, two C-terminal domains domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   39 21
Pan_troglodytes_76_2.1.4   (Chimpanzee)   18 9
Gorilla_gorilla_76_3.1   (Western gorilla)   20 10
Pongo_abelii_76_2   (Sumatran orangutan)   18 9
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   18 9
Papio_anubis_76   (Olive baboon)   18 9
Macaca_mulatta_76_1   (Rhesus monkey)   22 12
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   33 17
Otolemur_garnettii_76_3   (Small-eared galago)   14 7
Microcebus_murinus_76_1   (Gray mouse lemur)   15 8
Rattus_norvegicus_76_5.0   (Norway rat)   18 9
Mus_musculus_76_38   (House mouse)   25 13
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   11 6
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   16 8
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   17 8
Cavia_porcellus_76_3   (Domestic guinea pig)   20 10
Oryctolagus_cuniculus_76_2   (Rabbit)   16 8
Ochotona_princeps_76   (American pika)   15 8
Tupaia_belangeri_76   (Northern tree shrew)   13 7
Sus_scrofa_76_10.2   (Pig)   20 11
Bos_taurus_76_3.1   (Cattle)   15 8
Ovis_aries_76_3.1   (Sheep)   18 9
Vicugna_pacos_76_1   (Alpaca)   11 7
Tursiops_truncatus_76_1   (Bottlenose dolphin)   15 9
Mustela_putorius_furo_76_1.0   (Domestic ferret)   16 8
Ailuropoda_melanoleuca_76_1   (Giant panda)   16 8
Canis_familiaris_76_3.1   (Dog)   16 8
Felis_catus_76_6.2   (Domestic cat)   16 8
Equus_caballus_76_2   (Horse)   15 8
Myotis_lucifugus_76_2.0   (Little brown bat)   17 9
Pteropus_vampyrus_76_1   (Large flying fox)   15 8
Sorex_araneus_76_1   (European shrew)   10 5
Erinaceus_europaeus_76   (Western European hedgehog)   11 7
Procavia_capensis_76_1   (Cape rock hyrax)   13 8
Loxodonta_africana_76_3   (African savanna elephant)   26 13
Echinops_telfairi_76   (Small Madagascar hedgehog)   14 7
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   15 8
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   10 5
Macropus_eugenii_76_1.0   (Tammar wallaby)   16 8
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   22 11
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   16 8
Ornithorhynchus_anatinus_76_5   (Platypus)   8 5
Saccoglossus_kowalevskii_v3.0 13 6
Petromyzon_marinus_76_7.0   (Sea lamprey)   5 3
Meleagris_gallopavo_76_2   (Turkey)   16 8
Gallus_gallus_76_4   (Chicken)   16 8
Anas_platyrhynchos_76_1.0   (Mallard)   14 7
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   18 9
Ficedula_albicollis_76_1.0   (Collared flycatcher)   18 9
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   12 6
Anolis_carolinensis_76_2.0   (Green anole)   23 13
Xenopus_laevis_   (African clawed frog)   10 5
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   28 14
Latimeria_chalumnae_76_1   (Coelacanth)   20 10
Lepisosteus_oculatus_76   (Spotted gar)   21 11
Gadus_morhua_76_1   (Atlantic cod)   47 24
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   18 9
Takifugu_rubripes_76_4   (Torafugu)   50 26
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   20 10
Oryzias_latipes_76_1   (Japanese medaka)   13 7
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   18 9
Poecilia_formosa_76   (Amazon molly)   26 13
Oreochromis_niloticus_76_1.0   (Nile tilapia)   31 17
Astyanax_mexicanus_76   (Mexican tetra)   18 10
Danio_rerio_76_9   (Zebrafish)   40 22
Oikopleura_dioica 2 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   9 5
Ciona_intestinalis_76   (Vase tunicate)   6 3
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   8 5
Adineta_vaga 1 1
Octopus_bimaculoides_280 8 5
Crassostrea_gigas_22   (Pacific oyster)   12 5
Lottia_gigantea_   (Owl limpet)   8 4
Capitella_sp._I_ 6 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   6 3
Heliconius_melpomene_   (Postman butterfly)   4 2
Bombyx_mori_   (Domestic silkworm)   7 4
Nasonia_vitripennis_   (Jewel wasp)   2 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   10 6
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   4 2
Linepithema_humile_v1.1   (Argentine ant)   4 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   4 2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   4 2
Atta_cephalotes_v1.1 4 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   4 2
Lucilia_cuprina   (Australian sheep blowfly)   2 1
Drosophila_grimshawi_1.3 2 1
Drosophila_willistoni_1.3 2 1
Drosophila_pseudoobscura_2.13 2 1
Drosophila_persimilis_1.3 2 1
Drosophila_suzukii 4 2
Drosophila_yakuba_1.3 2 1
Drosophila_simulans_1.3 2 1
Drosophila_sechellia_1.3 2 1
Drosophila_melanogaster_76_5   (Fruit fly)   4 2
Drosophila_erecta_1.3 2 1
Drosophila_ananassae_1.3 2 1
Drosophila_virilis_1.2 2 1
Drosophila_mojavensis_1.3 2 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   4 2
Anopheles_darlingi_22   (American malaria mosquito)   7 3
Anopheles_gambiae_49_3j   (African malaria mosquito)   3 2
Tribolium_castaneum_3.0   (Red flour beetle)   6 3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2 1
Acyrthosiphon_pisum_   (Pea aphid)   4 2
Rhodnius_prolixus_22 17 9
Daphnia_pulex_   (Common water flea)   16 8
Strigamia_maritima_22 8 4
Sarcoptes_scabiei 4 3
Tetranychus_urticae_   (Two-spotted spider mite)   4 2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   8 5
Onchocerca_volvulus_22 2 2
Trichinella_spiralis_22 2 1
Mnemiopsis_leidyi   (Sea walnut)   3 2
Thelohanellus_kitauei 2 2
Acropora_digitifera_v1.0 7 4
Nematostella_vectensis_1.0   (Starlet sea anemone)   2 1
Hydra_vulgaris 2 1
Amphimedon_queenslandica 6 3
Malassezia_globosa_CBS_7966_ 2 2
Streptomyces_bingchenggensis_BCW-1 1 1
Bifidobacterium_longum_subsp._longum_JDM301 1 1
Bifidobacterium_breve_ACS-071-V-Sch8b 1 1
Deinococcus_radiodurans_R1 1 1
Ignicoccus_hospitalis_KIN4/I 1 1
Sulfolobus_tokodaii_str._7 1 1
Methanoregula_boonei_6A8 1 1
Methanoplanus_petrolearius_DSM_11571 1 1
Archaeoglobus_profundus_DSM_5631 1 1
Archaeoglobus_fulgidus_DSM_4304 1 1
Haloquadratum_walsbyi_DSM_16790 1 1
Haloferax_volcanii_DS2 1 1
Haloarcula_hispanica_ATCC_33960 1 1
Haloarcula_marismortui_ATCC_43049 2 2

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   37 19
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   4 2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   4 2
Streptomyces_rapamycinicus_NRRL_5491 1 1
Bifidobacterium_longum_NCC2705 1 1
Bifidobacterium_longum_DJO10A 1 1
Bifidobacterium_longum_subsp._infantis_157F 1 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1 1
Bifidobacterium_longum_subsp._longum_KACC_91563 1 1
Bifidobacterium_longum_subsp._longum_BBMN68 1 1
Bifidobacterium_longum_subsp._longum_F8 1 1
Bifidobacterium_longum_subsp._longum_JCM_1217 1 1
Bifidobacterium_breve_UCC2003 1 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 2 2
Natrinema_pellirubrum_DSM_15624 1 1
Haloquadratum_walsbyi_C23 1 1
Haloarcula_hispanica_N601 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   18 9
Pan_troglodytes_69_2.1.4   (Chimpanzee)   18 9
Gorilla_gorilla_69_3.1   (Western gorilla)   16 8
Pongo_abelii_69_2   (Sumatran orangutan)   18 9
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   18 9
Macaca_mulatta_69_1   (Rhesus monkey)   16 8
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   16 8
Otolemur_garnettii_69_3   (Small-eared galago)   14 7
Microcebus_murinus_69_1   (Gray mouse lemur)   15 8
Rattus_norvegicus_69_3.4   (Norway rat)   18 9
Mus_musculus_69_38   (House mouse)   18 9
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   11 6
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   16 8
Cavia_porcellus_69_3   (Domestic guinea pig)   18 9
Oryctolagus_cuniculus_69_2   (Rabbit)   16 8
Ochotona_princeps_69   (American pika)   15 8
Tupaia_belangeri_69   (Northern tree shrew)   13 7
Sus_scrofa_69_10.2   (Pig)   15 8
Bos_taurus_69_3.1   (Cattle)   15 8
Vicugna_pacos_69_1   (Alpaca)   11 7
Tursiops_truncatus_69_1   (Bottlenose dolphin)   15 9
Mustela_putorius_furo_69_1.0   (Domestic ferret)   16 8
Ailuropoda_melanoleuca_69_1   (Giant panda)   16 8
Canis_familiaris_69_3.1   (Dog)   16 8
Felis_catus_69   (Domestic cat)   16 8
Equus_caballus_69_2   (Horse)   15 8
Myotis_lucifugus_69_2.0   (Little brown bat)   17 9
Pteropus_vampyrus_69_1   (Large flying fox)   15 8
Sorex_araneus_69_1   (European shrew)   10 5
Erinaceus_europaeus_69   (Western European hedgehog)   11 7
Procavia_capensis_69_1   (Cape rock hyrax)   13 8
Loxodonta_africana_69_3   (African savanna elephant)   16 8
Echinops_telfairi_69   (Small Madagascar hedgehog)   14 7
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   10 6
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   10 5
Macropus_eugenii_69_1.0   (Tammar wallaby)   16 8
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   16 8
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   14 7
Ornithorhynchus_anatinus_69_5   (Platypus)   8 5
Petromyzon_marinus_69_7.0   (Sea lamprey)   5 3
Meleagris_gallopavo_69_2   (Turkey)   14 7
Gallus_gallus_69_2   (Chicken)   16 8
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   18 9
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   10 5
Anolis_carolinensis_69_2.0   (Green anole)   22 12
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   26 13
Latimeria_chalumnae_69_1   (Coelacanth)   18 9
Gadus_morhua_69_1   (Atlantic cod)   22 11
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   18 9
Takifugu_rubripes_69_4   (Torafugu)   17 9
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   14 7
Oryzias_latipes_69_1   (Japanese medaka)   13 7
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   18 9
Oreochromis_niloticus_69_1.0   (Nile tilapia)   28 15
Danio_rerio_69_9   (Zebrafish)   24 13
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   6 3
Ciona_intestinalis_69   (Vase tunicate)   6 3
Drosophila_melanogaster_69_5   (Fruit fly)   2 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   35 19
Homo_sapiens__(NCBI_version)   (Human)   23 12
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   18 9
Heliconius_numata__(Incomplete) 3 2
Loa_loa_v3.3_(Request)   (Eye worm)   1 1
NCBI_plasmid_sequences_(Plasmids) 1 1
TargetDB__(Targets) 24 13
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 294 294
STRING_v9.0.5_(STRING) 513 270
Uniprot_2018_03_genome 4706 2536
NCBI_2017_08_genome 6480 3432
PDB_chains_(SCOP_1.75)_(PDB) 16 8
Protein_Data_Bank_(all_PDB_sequenc) 111 56

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