SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for PapD-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a PapD-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   20 20
Pan_troglodytes_76_2.1.4   (Chimpanzee)   8 8
Gorilla_gorilla_76_3.1   (Western gorilla)   9 9
Pongo_abelii_76_2   (Sumatran orangutan)   6 6
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   5 5
Papio_anubis_76   (Olive baboon)   7 7
Macaca_mulatta_76_1   (Rhesus monkey)   11 11
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   14 14
Otolemur_garnettii_76_3   (Small-eared galago)   8 8
Microcebus_murinus_76_1   (Gray mouse lemur)   5 5
Rattus_norvegicus_76_5.0   (Norway rat)   9 9
Mus_musculus_76_38   (House mouse)   13 13
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   5 5
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   5 5
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   6 6
Cavia_porcellus_76_3   (Domestic guinea pig)   6 6
Oryctolagus_cuniculus_76_2   (Rabbit)   6 6
Ochotona_princeps_76   (American pika)   4 4
Tupaia_belangeri_76   (Northern tree shrew)   6 6
Sus_scrofa_76_10.2   (Pig)   12 12
Bos_taurus_76_3.1   (Cattle)   7 7
Ovis_aries_76_3.1   (Sheep)   8 8
Vicugna_pacos_76_1   (Alpaca)   5 5
Tursiops_truncatus_76_1   (Bottlenose dolphin)   5 5
Mustela_putorius_furo_76_1.0   (Domestic ferret)   5 5
Ailuropoda_melanoleuca_76_1   (Giant panda)   7 7
Canis_familiaris_76_3.1   (Dog)   8 8
Felis_catus_76_6.2   (Domestic cat)   9 9
Equus_caballus_76_2   (Horse)   6 6
Myotis_lucifugus_76_2.0   (Little brown bat)   8 7
Pteropus_vampyrus_76_1   (Large flying fox)   6 6
Sorex_araneus_76_1   (European shrew)   4 4
Erinaceus_europaeus_76   (Western European hedgehog)   7 7
Procavia_capensis_76_1   (Cape rock hyrax)   4 4
Loxodonta_africana_76_3   (African savanna elephant)   12 12
Echinops_telfairi_76   (Small Madagascar hedgehog)   6 6
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   12 12
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   4 4
Macropus_eugenii_76_1.0   (Tammar wallaby)   4 4
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   11 11
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   7 7
Ornithorhynchus_anatinus_76_5   (Platypus)   5 5
Saccoglossus_kowalevskii_v3.0 13 13
Petromyzon_marinus_76_7.0   (Sea lamprey)   5 5
Meleagris_gallopavo_76_2   (Turkey)   6 6
Gallus_gallus_76_4   (Chicken)   4 4
Anas_platyrhynchos_76_1.0   (Mallard)   7 6
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   7 7
Ficedula_albicollis_76_1.0   (Collared flycatcher)   5 5
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   4 4
Anolis_carolinensis_76_2.0   (Green anole)   6 6
Xenopus_laevis_   (African clawed frog)   11 11
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   10 10
Latimeria_chalumnae_76_1   (Coelacanth)   8 8
Lepisosteus_oculatus_76   (Spotted gar)   8 8
Gadus_morhua_76_1   (Atlantic cod)   5 5
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   6 6
Takifugu_rubripes_76_4   (Torafugu)   8 8
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   6 6
Oryzias_latipes_76_1   (Japanese medaka)   11 11
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   5 5
Poecilia_formosa_76   (Amazon molly)   7 7
Oreochromis_niloticus_76_1.0   (Nile tilapia)   10 10
Astyanax_mexicanus_76   (Mexican tetra)   5 5
Danio_rerio_76_9   (Zebrafish)   5 5
Oikopleura_dioica 5 5
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   3 3
Ciona_intestinalis_76   (Vase tunicate)   6 6
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   9 9
Adineta_vaga 16 16
Octopus_bimaculoides_280 4 4
Crassostrea_gigas_22   (Pacific oyster)   3 3
Lottia_gigantea_   (Owl limpet)   5 5
Helobdella_robusta_ 6 6
Capitella_sp._I_ 7 7
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4 4
Heliconius_melpomene_   (Postman butterfly)   5 4
Bombyx_mori_   (Domestic silkworm)   2 2
Nasonia_vitripennis_   (Jewel wasp)   3 3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   4 4
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3 3
Linepithema_humile_v1.1   (Argentine ant)   3 3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4 4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2 2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3 3
Atta_cephalotes_v1.1 3 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3 3
Lucilia_cuprina   (Australian sheep blowfly)   2 2
Drosophila_grimshawi_1.3 4 4
Drosophila_willistoni_1.3 4 4
Drosophila_pseudoobscura_2.13 8 8
Drosophila_persimilis_1.3 8 8
Drosophila_suzukii 5 5
Drosophila_yakuba_1.3 6 5
Drosophila_simulans_1.3 4 4
Drosophila_sechellia_1.3 5 5
Drosophila_melanogaster_76_5   (Fruit fly)   12 12
Drosophila_erecta_1.3 4 4
Drosophila_ananassae_1.3 5 5
Drosophila_virilis_1.2 5 5
Drosophila_mojavensis_1.3 5 5
Megaselia_scalaris_22 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2 2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   2 2
Anopheles_darlingi_22   (American malaria mosquito)   2 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   4 4
Tribolium_castaneum_3.0   (Red flour beetle)   4 4
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3 3
Acyrthosiphon_pisum_   (Pea aphid)   4 4
Rhodnius_prolixus_22 4 4
Daphnia_pulex_   (Common water flea)   3 3
Strigamia_maritima_22 3 3
Sarcoptes_scabiei 4 4
Tetranychus_urticae_   (Two-spotted spider mite)   5 5
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3 3
Pristionchus_pacificus_ 115 115
Meloidogyne_incognita_   (Southern root-knot nematode)   57 56
Meloidogyne_hapla_ 10 10
Onchocerca_volvulus_22 34 32
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   38 38
Caenorhabditis_japonica_ 137 137
Caenorhabditis_brenneri_ 82 82
Caenorhabditis_remanei_ 123 120
Caenorhabditis_elegans_76_235   (Roundworm)   120 120
Caenorhabditis_briggsae_2 84 84
Trichinella_spiralis_22 30 30
Hymenolepis_microstoma_ 3 2
Echinococcus_multilocularis_ 2 1
Echinococcus_granulosus_ 2 1
Taenia_solium_   (Pork tapeworm)   2 1
Schistosoma_mansoni_ 25 13
Mnemiopsis_leidyi   (Sea walnut)   4 4
Thelohanellus_kitauei 4 4
Acropora_digitifera_v1.0 2 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   4 4
Hydra_vulgaris 4 4
Amphimedon_queenslandica 7 7
Trichoplax_adhaerens_ 4 4
Proterospongia_sp._ATCC_50818_ 3 3
Monosiga_brevicollis_ 2 2
Sphaeroforma_arctica_JP610_ 3 3
Capsaspora_owczarzaki_ATCC_30864_ 4 4
Conidiobolus_coronatus_NRRL28638_v1.0 2 2
Mortierella_verticillata_NRRL_6337_ 4 4
Phycomyces_blakesleeanus_ 3 3
Rhizopus_oryzae_RA_99-880_ 4 4
Mucor_circinelloides_ 3 3
Rhizomucor_miehei_CAU432_ 3 3
Malassezia_globosa_CBS_7966_ 2 2
Sporisorium_reilianum_22 1 1
Ustilago_maydis_ 1 1
Mixia_osmundae_IAM_14324_v1.0 1 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1 1
Melampsora_laricis-populina_ 1 1
Rhodotorula_graminis_WP1_v1.0 1 1
Sporobolomyces_roseus_IAM_13481_ 1 1
Microbotryum_violaceum_22 1 1
Wallemia_sebi_v1.0 1 1
Sphaerobolus_stellatus_v1.0 1 1
Piloderma_croceum_F_1598_v1.0 1 1
Serpula_lacrymans_var._lacrymans_S7.9_ 1 1
Coniophora_puteana 1 1
Hydnomerulius_pinastri_v2.0 1 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1 1
Pisolithus_microcarpus_441_v1.0 1 1
Pisolithus_tinctorius_Marx_270_v1.0 2 2
Scleroderma_citrinum_Foug_A_v1.0 1 1
Coprinopsis_cinerea_okayama7_130_v3 3 3
Pleurotus_ostreatus_   (Oyster mushroom)   4 3
Amanita_thiersii_Skay4041_v1.0 1 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1 1
Galerina_marginata_v1.0 2 2
Hebeloma_cylindrosporum_h7_v2.0 1 1
Laccaria_bicolor_S238N-H82_ 2 2
Agaricus_bisporus_var._bisporus_ 1 1
Schizophyllum_commune_ 3 2
Stereum_hirsutum_FP-91666_SS1__v1.0 1 1
Heterobasidion_annosum_ 2 2
Gloeophyllum_trabeumv1.0 1 1
Punctularia_strigosozonata_v1.0 1 1
Sebacina_vermifera_MAFF_305830_v1.0 1 1
Fomitiporia_mediterranea_v1.0 1 1
Tulasnella_calospora_AL13/4D_v1.0 2 2
Wolfiporia_cocos_MD-104_SS10__v1.0 1 1
Fomitopsis_pinicolav1.0 1 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1 1
Phanerochaete_chrysosporium_RP-78_2.1 1 1
Dichomitus_squalens 1 1
Trametes_versicolor_v1.0 1 1
Tremella_mesenterica_   (Witches' butter)   1 1
Daldinia_eschscholzii_EC12_v1.0 1 1
Apiospora_montagnei_NRRL_25634_v1.0 1 1
Magnaporthe_poae_ATCC_64411_22 1 1
Magnaporthe_grisea_70-15_ 1 1
Podospora_anserina_ 1 1
Sporotrichum_thermophile_ATCC_42464_ 1 1
Thielavia_terrestris_NRRL_8126_ 1 1
Chaetomium_globosum_CBS_148.51_ 1 1
Neurospora_tetrasperma_ 1 1
Neurospora_discreta_FGSC_8579_ 1 1
Neurospora_crassa_OR74A_ 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1 1
Verticillium_albo-atrum_VaMs.102_ 1 1
Verticillium_dahliae_VdLs.17_ 1 1
Acremonium_alcalophilumv_1.0 1 1
Glomerella_graminicola_22 1 1
Fusarium_graminearum_ 1 1
Nectria_haematococca_mpVI_ 1 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1 1
Fusarium_verticillioides_7600_ 1 1
Trichoderma_asperellum_CBS_433.97_v1.0 1 1
Trichoderma_atroviride_ 1 1
Trichoderma_citrinoviride_v1.0 1 1
Trichoderma_reesei_1.2 1 1
Trichoderma_virens_Gv29-8_ 1 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1 1
Trichoderma_harzianum_CBS_226.95_v1.0 1 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1 1
Botrytis_cinerea_B05.10_ 1 1
Sclerotinia_sclerotiorum_ 1 1
Blumeria_graminis_22 1 1
Didymella_exigua_CBS_183.55_v1.0 1 1
Leptosphaeria_maculans_22 2 2
Setosphaeria_turcica_v1.0 1 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1 1
Cochliobolus_victoriae_FI3_v1.0 1 1
Cochliobolus_carbonum_26-R-13_v1.0 1 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1 1
Alternaria_brassicicola_ 1 1
Cochliobolus_lunatus_m118_v2.0 1 1
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 1 1
Mycosphaerella_graminicola_IPO323_ 1 1
Zasmidium_cellare_ATCC_36951_v1.0 1 1
Dothistroma_septosporum 1 1
Septoria_musiva_v1.0 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Paracoccidioides_brasiliensis_Pb18_ 1 1
Coccidioides_posadasii_RMSCC_3488_ 1 1
Coccidioides_immitis_RS_ 1 1
Ajellomyces_dermatitidis_SLH14081_ 1 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_equinum_CBS_127.97_ 1 1
Trichophyton_verrucosum_HKI_0517_ 1 1
Arthroderma_benhamiae_CBS_112371_ 1 1
Trichophyton_tonsurans_CBS_112818_ 1 1
Trichophyton_rubrum_CBS_118892_ 1 1
Uncinocarpus_reesii_1704_ 1 1
Aspergillus_zonatus_v1.0 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1 1
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_acidus_v1.0 1 1
Aspergillus_fumigatus_Af293 1 1
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_nidulans_FGSC_A4_ 1 1
Aspergillus_sydowii_v1.0 1 1
Aspergillus_versicolor_v1.0 1 1
Aspergillus_glaucus 1 1
Aspergillus_carbonarius_ITEM_5010_ 1 1
Neosartorya_fischeri_NRRL_181_ 1 1
Aspergillus_terreus_NIH2624_ 1 1
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 1 1
Aspergillus_oryzae_RIB40_ 1 1
Aspergillus_niger_22 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Aspergillus_clavatus_NRRL_1_ 1 1
Penicillium_marneffei_ATCC_18224_ 1 1
Tuber_melanosporum_Mel28_22 1 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1 1
Hansenula_polymorpha_v2.0 1 1
Dekkera_bruxellensis_CBS_2499_v2.0 1 1
Pichia_membranifaciensv1.0 1 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1 1
Candida_dubliniensis_CD36_ 1 1
Candida_albicans_SC5314 1 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 1 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1 1
Pichia_stipitis_CBS_6054_ 1 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1 1
Debaromyces_hansenii 1 1
Wickerhamomyces_anomalus 1 1
Pichia_pastoris_GS115_ 1 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1 1
Yarrowia_lipolytica_CLIB122 2 2
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1 1
Vanderwaltozyma_polyspora_DSM_70294_ 2 2
Candida_glabrata_CBS138 2 2
Kluyveromyces_thermotolerans_CBS_6340 1 1
Lachancea_kluyveri_ 1 1
Ashbya_gossypii_ATCC_10895_ 1 1
Zygosaccharomyces_rouxii_ 1 1
Saccharomyces_mikatae_MIT 2 2
Saccharomyces_paradoxus_MIT 1 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   2 2
Saccharomyces_bayanus_MIT 1 1
Kluyveromyces_lactis 1 1
Schizosaccharomyces_cryophilus_OY26_22 2 2
Schizosaccharomyces_octosporus_yFS286_ 2 2
Schizosaccharomyces_japonicus_yFS275_ 1 1
Schizosaccharomyces_pombe   (Fission yeast)   2 2
Catenaria_anguillulae_PL171_v1.0 6 5
Allomyces_macrogynus_ATCC_38327_ 12 12
Spizellomyces_punctatus_DAOM_BR117_ 9 8
Dictyostelium_discoideum 1 1
Dictyostelium_purpureum_ 2 2
Entamoeba_dispar_1.2 4 4
Entamoeba_invadens_1.2 3 3
Entamoeba_histolytica_1 4 4
Selaginella_moellendorffii_ 14 14
Pinus_taeda   (Loblolly pine)   6 6
Picea_abies   (Norway spruce)   6 6
Eucalyptus_grandis_v201   (Rose gum)   24 24
Theobroma_cacao_B97-61/B2_v1   (Cacao)   11 11
Gossypium_raimondii_v221 80 80
Citrus_clementina_v165 23 23
Citrus_sinensis_v154   (Sweet orange)   45 44
Thellungiella_halophila_v173 12 12
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   20 20
Capsella_rubella_v183 8 8
Arabidopsis_lyrata_   (Lyrate rockcress)   14 14
Arabidopsis_thaliana_10   (Thale cress)   22 19
Carica_papaya_   (Papaya)   12 12
Medicago_truncatula_   (Barrel medic)   30 30
Phaseolus_vulgaris_v186   (French bean)   19 19
Glycine_max_v109   (Soybean)   38 38
Cucumis_sativus_v122   (Cucumber)   21 21
Fragaria_vesca_   (Wild strawberry)   12 12
Malus_domestica_v196   (Apple)   21 20
Prunus_persica_v139   (Peach)   13 13
Linum_usitatissimum_v200   (Flax)   20 20
Manihot_esculenta_v147   (Cassava)   24 24
Populus_trichocarpa_v156   (Black cottonwood)   26 26
Vitis_vinifera_   (Wine grape)   10 10
Mimulus_guttatus_v140   (Spotted monkey flower)   17 17
Solanum_lycopersicum_v.2.3   (Tomato)   18 18
Solanum_tuberosum_   (Potato)   28 28
Actinidia_chinensis_Hongyang_ 19 19
Aquilegia_coerulea_v195 23 23
Triticum_urartu_22 34 29
Triticum_aestivum_22   (Bread wheat)   72 68
Aegilops_tauschii_22 62 49
Brachypodium_distachyon_   (Stiff brome)   29 29
Oryza_barthii_22   (African wild rice)   24 22
Oryza_meridionalis_22 22 21
Oryza_glumaepatula_22 19 17
Oryza_glaberrima   (African rice)   17 17
Oryza_punctata_22 24 24
Oryza_nivara_22 23 23
Oryza_brachyantha_22   (Malo sina)   15 15
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   29 29
Oryza_sativa_v193   (Rice)   27 27
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   17 17
Panicum_virgatum_v202   (Switchgrass)   49 49
Setaria_italica_v164   (Foxtail millet)   22 21
Zea_mays_subsp._mays_   (Maize)   38 38
Zea_mays_v181   (Maize)   43 43
Sorghum_bicolor_   (Sorghum)   15 15
Musa_balbisiana   (Balbis banana)   21 19
Musa_acuminata_22   (Wild Malaysian banana)   23 23
Amborella_trichopoda_22 7 7
Physcomitrella_patens 8 8
Coccomyxa_subellipsoidea_sp._C-169_v2 2 2
Chlorella_variabilis_sp._NC64A_ 2 2
Chlorella_vulgaris_ 1 1
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Ostreococcus_sp._RCC809_ 1 1
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 1 1
Micromonas_sp._RCC299_ 2 2
Micromonas_pusilla_CCMP1545_v3.0 3 3
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Porphyridium_purpureum_02_2012 3 3
Thecamonas_trahens_ATCC_50062_ 1 1
Bigelowiella_natans_CCMP2755_22 10 7
Giardia_lamblia_2.3 2 2
Cyanophora_paradoxa_ 3 3
Leishmania_mexicana_2.4 4 4
Leishmania_major_strain_Friedlin_ 5 5
Leishmania_infantum_JPCM5_2.4 5 5
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 4 4
Trypanosoma_vivax_ 1 1
Trypanosoma_cruzi_strain_CL_Brener 2 2
Trypanosoma_congolense_2.4 1 1
Trypanosoma_brucei_gambiense_v4.1 5 5
Trypanosoma_brucei_TREU927_v4.1 4 4
Ectocarpus_siliculosus 4 4
Aureococcus_anophagefferens_ 2 2
Albugo_laibachii_22 5 4
Pythium_iwayamai_DAOM_BR242034_22 5 4
Pythium_arrhenomanes_ATCC_12531_22 3 3
Pythium_ultimum_v1.7-2 5 4
Pythium_aphanidermatum_DAOM_BR444_22 5 4
Pythium_irregulare_DAOM_BR486_22 5 4
Pythium_vexans_DAOM_BR484_22 4 3
Phytophthora_ramorum_1.1   (Sudden oak death agent)   4 3
Phytophthora_sojae_1.1 4 3
Phytophthora_infestans_T30-4_ 4 3
Phytophthora_capsici_ 5 4
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Fragilariopsis_cylindrus 2 2
Thalassiosira_pseudonana_CCMP1335 3 3
Perkinsus_marinus_ATCC_50983_ 6 6
Paramecium_tetraurelia_ 38 38
Tetrahymena_thermophila_SB210_1_ 11 10
Ichthyophthirius_multifiliis_strain_G5_ 7 6
Cryptosporidium_hominis 1 1
Cryptosporidium_muris 1 1
Cryptosporidium_parvum_Iowa_II 1 1
Neospora_caninum 2 2
Toxoplasma_gondii_ME49 2 2
Toxoplasma_gondii_GT1 2 2
Babesia_bovis_T2Bo_ 2 2
Theileria_parva__ 1 1
Theileria_annulata 1 1
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Plasmodium_yoelii_ssp._yoelii_1_ 2 2
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 5 5
Naegleria_gruberi_ 3 3
Trichomonas_vaginalis_ 15 12
Guillardia_theta_CCMP2712_v1.0_ 5 4
Emiliania_huxleyi_CCMP1516_ 6 6
Synechocystis_sp._PCC_6803 1 1
Trichodesmium_erythraeum_IMS101 1 1
Rivularia_sp._PCC_7116 1 1
Anabaena_variabilis_ATCC_29413 1 1
Nostoc_sp._PCC_7107 1 1
Nostoc_punctiforme_PCC_73102 1 1
Nostoc_sp._PCC_7120 1 1
Nostoc_sp._PCC_7524 1 1
Anabaena_sp._90 2 2
Actinoplanes_sp._SE50/110 1 1
Deinococcus_gobiensis_I-0 2 2
Deinococcus_maricopensis_DSM_21211 1 1
Deinococcus_radiodurans_R1 1 1
Gemmatimonas_aurantiaca_T-27 1 1
Pelodictyon_phaeoclathratiforme_BU-1 1 1
Chlorobium_luteolum_DSM_273 1 1
Chlorobium_phaeobacteroides_DSM_266 1 1
Chlorobium_phaeovibrioides_DSM_265 2 2
Chlorobium_limicola_DSM_245 1 1
Prosthecochloris_aestuarii_DSM_271 2 2
Chitinophaga_pinensis_DSM_2588 1 1
Bacteroides_sp._CF50 1 1
Gramella_forsetii_KT0803 1 1
Croceibacter_atlanticus_HTCC2559 2 2
Sphaerochaeta_pleomorpha_str._Grapes 1 1
Sphaerochaeta_globus_str._Buddy 1 1
Spirochaeta_africana_DSM_8902 1 1
Persephonella_marina_EX-H1 1 1
Elusimicrobium_minutum_Pei191 1 1
Terriglobus_roseus_DSM_18391 2 2
Acidithiobacillus_ferrooxidans_ATCC_53993 1 1
Bacteriovorax_marinus_SJ 2 2
Desulfobulbus_propionicus_DSM_2032 1 1
Pelobacter_carbinolicus_DSM_2380 1 1
Haliangium_ochraceum_DSM_14365 1 1
Anaeromyxobacter_sp._Fw109-5 1 1
Anaeromyxobacter_dehalogenans_2CP-1 1 1
Myxococcus_xanthus_DK_1622 1 1
Myxococcus_fulvus_HW-1 1 1
Azoarcus_sp._KH32C 1 1
Laribacter_hongkongensis_HLHK9 1 1
Chromobacterium_violaceum_ATCC_12472 1 1
Burkholderia_rhizoxinica_HKI_454 1 1
Burkholderia_phytofirmans_PsJN 2 2
Burkholderia_xenovorans_LB400 3 3
Ralstonia_eutropha_JMP134 2 2
Cupriavidus_taiwanensis_LMG_19424 1 1
Cupriavidus_metallidurans_CH34 5 5
Ralstonia_eutropha_H16 1 1
Ralstonia_pickettii_12D 2 2
Ralstonia_solanacearum_CFBP2957 1 1
Burkholderia_sp._RPE64 4 4
Burkholderia_sp._CCGE1002 1 1
Burkholderia_thailandensis_E264 3 3
Burkholderia_pseudomallei_1106a 6 6
Burkholderia_mallei_SAVP1 3 3
Burkholderia_ambifaria_AMMD 6 6
Burkholderia_cenocepacia_HI2424 2 2
Burkholderia_multivorans_ATCC_17616 3 3
Burkholderia_vietnamiensis_G4 1 1
Burkholderia_gladioli_BSR3 4 4
Burkholderia_glumae_BGR1 2 2
Ramlibacter_tataouinensis_TTB310 2 2
Delftia_sp._Cs1-4 1 1
Delftia_acidovorans_SPH-1 2 2
Polaromonas_sp._JS666 2 2
Polaromonas_naphthalenivorans_CJ2 1 1
Variovorax_paradoxus_S110 1 1
Acidovorax_citrulli_AAC00-1 1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1
Comamonas_testosteroni_CNB-2 1 1
Collimonas_fungivorans_Ter331 3 3
Herbaspirillum_seropedicae_SmR1 1 1
Advenella_kashmirensis_WT001 2 2
Bordetella_petrii_DSM_12804 3 3
Bordetella_avium_197N 2 2
Bordetella_pertussis_Tohama_I 1 1
Bordetella_parapertussis_12822 1 1
Bordetella_bronchiseptica_RB50 1 1
Achromobacter_xylosoxidans_A8 4 4
Achromobacter_xylosoxidans 3 3
Gallionella_capsiferriformans_ES-2 1 1
Methylovorus_glucosetrophus_SIP3-4 1 1
Parvularcula_bermudensis_HTCC2503 1 1
Phenylobacterium_zucineum_HLK1 1 1
Sphingopyxis_alaskensis_RB2256 1 1
Novosphingobium_sp._PP1Y 2 2
Novosphingobium_aromaticivorans_DSM_12444 2 2
Sphingobium_japonicum_UT26S 1 1
Hyphomonas_neptunium_ATCC_15444 2 2
Rhodospirillum_centenum_SW 1 1
Granulibacter_bethesdensis_CGDNIH1 1 1
Micavibrio_aeruginosavorus_ARL-13 1 1
Rickettsia_bellii_OSU_85-389 1 1
Rickettsia_philipii_str._364D 1 1
Rickettsia_heilongjiangensis_054 1 1
Rickettsia_peacockii_str._Rustic 1 1
Rickettsia_felis_URRWXCal2 1 1
Rickettsia_massiliae_MTU5 1 1
Rickettsia_japonica_YH 1 1
Rickettsia_rhipicephali_str._3-7-female6-CWPP 1 1
Rickettsia_montanensis_str._OSU_85-930 1 1
Candidatus_Rickettsia_amblyommii_str._GAT-30V 1 1
Rickettsia_australis_str._Cutlack 1 1
Rickettsia_rickettsii_str._'Sheila_Smith' 1 1
Rickettsia_conorii_str._Malish_7 1 1
Ochrobactrum_anthropi_ATCC_49188 1 1
Sinorhizobium_medicae_WSM419 1 1
Sinorhizobium_meliloti_AK83 2 2
Agrobacterium_tumefaciens_str._C58 1 1
Agrobacterium_radiobacter_K84 1 1
Mesorhizobium_opportunistum_WSM2075 1 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1 1
Mesorhizobium_loti_MAFF303099 1 1
Rhodomicrobium_vannielii_ATCC_17100 1 1
Hyphomicrobium_sp._MC1 1 1
Hyphomicrobium_denitrificans_ATCC_51888 1 1
Cellvibrio_japonicus_Ueda107 1 1
Gallibacterium_anatis_UMN179 3 3
Haemophilus_parasuis_SH0165 1 1
Haemophilus_ducreyi_35000HP 1 1
Aeromonas_veronii_B565 1 1
Aeromonas_salmonicida_subsp._salmonicida_A449 3 3
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 4 4
Vibrio_fischeri_MJ11 1 1
Vibrio_sp._Ex25 1 1
Vibrio_harveyi_ATCC_BAA-1116 4 4
Vibrio_parahaemolyticus_RIMD_2210633 1 1
Vibrio_splendidus_LGP32 2 2
Vibrio_furnissii_NCTC_11218 4 4
Vibrio_vulnificus_MO6-24/O 1 1
Psychromonas_ingrahamii_37 2 2
Ferrimonas_balearica_DSM_9799 2 2
Shewanella_piezotolerans_WP3 1 1
Shewanella_halifaxensis_HAW-EB4 1 1
Shewanella_denitrificans_OS217 1 1
Shewanella_pealeana_ATCC_700345 1 1
Shewanella_oneidensis_MR-1 1 1
Shewanella_woodyi_ATCC_51908 1 1
Shewanella_sp._MR-4 1 1
Shewanella_violacea_DSS12 1 1
Shewanella_putrefaciens_CN-32 2 2
Pseudoalteromonas_sp._SM9913 1 1
Pseudoalteromonas_haloplanktis_TAC125 2 2
Glaciecola_sp._4H-3-7+YE-5 1 1
Glaciecola_nitratireducens_FR1064 1 1
Alteromonas_sp._SN2 1 1
Kangiella_koreensis_DSM_16069 1 1
Alcanivorax_borkumensis_SK2 2 2
Marinomonas_sp._MWYL1 2 2
Marinomonas_mediterranea_MMB-1 1 1
Halomonas_elongata_DSM_2581 1 1
Methylococcus_capsulatus_str._Bath 1 1
Rhodanobacter_denitrificans 1 1
Frateuria_aurantia_DSM_6220 2 2
Pseudoxanthomonas_suwonensis_11-1 1 1
Stenotrophomonas_maltophilia_K279a 5 5
Xylella_fastidiosa_M23 1 1
Xanthomonas_axonopodis_pv._citri_str._306 2 2
Xanthomonas_albilineans_GPE_PC73 1 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 2 2
Xanthomonas_campestris_pv._campestris_str._B100 2 2
Alkalilimnicola_ehrlichii_MLHE-1 1 1
Halorhodospira_halophila_SL1 1 1
Photorhabdus_asymbiotica 7 7
Photorhabdus_luminescens_subsp._laumondii_TTO1 15 15
Xenorhabdus_bovienii_SS-2004 4 4
Xenorhabdus_nematophila_ATCC_19061 2 2
Providencia_stuartii_MRSN_2154 36 36
Proteus_mirabilis_HI4320 18 18
Edwardsiella_ictaluri_93-146 5 5
Edwardsiella_tarda_EIB202 5 5
Rahnella_sp._Y9602 8 8
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 10 10
Yersinia_pseudotuberculosis_IP_31758 13 13
Yersinia_pestis_Pestoides_F 14 14
Yersinia_enterocolitica_subsp._enterocolitica_8081 13 13
Serratia_sp._AS12 6 6
Serratia_symbiotica_str._'Cinara_cedri' 1 1
Serratia_plymuthica_AS9 6 6
Serratia_proteamaculans_568 11 11
Pectobacterium_wasabiae_WPP163 2 2
Pectobacterium_sp._SCC3193 5 5
Pectobacterium_atrosepticum_SCRI1043 2 2
Pectobacterium_carotovorum_subsp._carotovorum_PC1 3 3
Pantoea_sp._At-9b 2 2
Pantoea_vagans_C9-1 7 7
Pantoea_ananatis_LMG_20103 8 8
Erwinia_tasmaniensis_Et1/99 15 15
Erwinia_sp._Ejp617 3 3
Erwinia_billingiae_Eb661 6 6
Erwinia_pyrifoliae_Ep1/96 3 3
Erwinia_amylovora_ATCC_49946 3 3
Escherichia_blattae_DSM_4481 2 2
Cronobacter_turicensis_z3032 7 7
Cronobacter_sakazakii_ES15 10 10
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 2 2
Enterobacteriaceae_bacterium_strain_FGI_57 16 16
Shigella_sonnei_Ss046 9 9
Shigella_flexneri_5_str._8401 8 8
Shigella_dysenteriae_Sd197 4 4
Shigella_boydii_CDC_3083-94 4 4
Salmonella_bongori_NCTC_12419 9 9
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 13 13
Klebsiella_oxytoca_E718 17 17
Klebsiella_variicola_At-22 12 12
Klebsiella_pneumoniae_NTUH-K2044 11 11
Enterobacter_aerogenes_KCTC_2190 14 14
Escherichia_fergusonii_ATCC_35469 8 8
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 11 11
Enterobacter_sp._R4-368 5 5
Enterobacter_sp._638 6 6
Enterobacter_asburiae_LF7a 13 13
Enterobacter_cloacae_subsp._dissolvens_SDM 13 13
Citrobacter_rodentium_ICC168 13 13
Citrobacter_koseri_ATCC_BAA-895 17 17
Pseudomonas_sp._TKP 6 6
Pseudomonas_sp._UW4 3 3
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1 1
Pseudomonas_entomophila_L48 2 2
Pseudomonas_syringae_pv._tomato_str._DC3000 3 3
Pseudomonas_fulva_12-X 1 1
Pseudomonas_putida_F1 5 5
Pseudomonas_protegens_Pf-5 4 4
Pseudomonas_fluorescens_SBW25 5 5
Pseudomonas_aeruginosa_UCBPP-PA14 8 8
Pseudomonas_sp._VLB120 4 4
Psychrobacter_sp._G 1 1
Psychrobacter_sp._PRwf-1 2 2
Psychrobacter_cryohalolentis_K5 1 1
Acinetobacter_oleivorans_DR1 4 4
Acinetobacter_calcoaceticus_PHEA-2 4 4
Acinetobacter_baumannii_ATCC_17978 3 3
Acinetobacter_sp._ADP1 4 4

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   22 22
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   11 11
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   4 4
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   59 59
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   114 114
Cryptococcus_neoformans_var._grubii_H99_ 1 1
Cryptococcus_neoformans_B-3501A_ 1 1
Cryptococcus_neoformans_JEC21_ 1 1
Paracoccidioides_brasiliensis_Pb01_ 1 1
Paracoccidioides_brasiliensis_Pb03_ 1 1
Coccidioides_posadasii_str._Silveira_ 1 1
Coccidioides_immitis_RMSCC_3703_ 1 1
Coccidioides_immitis_RMSCC_2394_ 1 1
Coccidioides_immitis_H538.4_ 1 1
Ajellomyces_dermatitidis_ER-3_ 1 1
Histoplasma_capsulatum_H143 1 1
Histoplasma_capsulatum_H88 1 1
Histoplasma_capsulatum_G186AR 1 1
Candida_albicans_WO-1_ 1 1
Saccharomyces_cerevisiae_UC5 2 2
Saccharomyces_cerevisiae_PW5 2 2
Saccharomyces_cerevisiae_FL100 2 2
Saccharomyces_cerevisiae_CLIB324 2 2
Saccharomyces_cerevisiae_CBS7960 1 1
Saccharomyces_cerevisiae_YJM269 2 2
Saccharomyces_cerevisiae_T7 2 2
Saccharomyces_cerevisiae_FostersB 2 2
Saccharomyces_cerevisiae_FostersO 2 2
Saccharomyces_cerevisiae_VL3 2 2
Saccharomyces_cerevisiae_Vin13 2 2
Saccharomyces_cerevisiae_LalvinQA23 2 2
Saccharomyces_cerevisiae_AWRI796 2 2
Saccharomyces_cerevisiae_Sigma1278b 2 2
Saccharomyces_cerevisiae_W303 2 2
Saccharomyces_cerevisiae_JAY291 2 2
Saccharomyces_cerevisiae_AWRI1631 1 1
Saccharomyces_cerevisiae_YPS163 2 2
Saccharomyces_cerevisiae_M22 1 1
Saccharomyces_cerevisiae_T73 1 1
Saccharomyces_cerevisiae_CLIB215 2 2
Saccharomyces_cerevisiae_Y10 1 1
Saccharomyces_cerevisiae_YJM789_ 2 2
Saccharomyces_cerevisiae_YJM789 2 2
Saccharomyces_cerevisiae_RM11-1a 2 2
Saccharomyces_cerevisiae_RM11-1a_ 2 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   2 2
Schizosaccharomyces_pombe_972h-_ 2 2
Batrachochytrium_dendrobatidis_JEL423_ 2 2
Batrachochytrium_dendrobatidis_JAM81_ 2 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   11 11
Hordeum_vulgare_22   (Domesticated barley)   40 40
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   25 23
Trypanosoma_brucei_Lister_427_v4.1 5 5
Neospora_caninum_Nc-Liverpool_6.2 2 2
Plasmodium_falciparum_HB3_ 1 1
Synechocystis_sp._PCC_6803_substr._PCC-P 1 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1 1
Synechocystis_sp._PCC_6803_substr._GT-I 1 1
Synechocystis_sp._PCC_6803 1 1
Synechococcus_sp._PCC_7002 1 1
Crinalium_epipsammum_PCC_9333 1 1
Cyanobacterium_aponinum_PCC_10605 1 1
Cyanobacterium_stanieri_PCC_7202 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 2 2
Cylindrospermum_stagnale_PCC_7417 2 2
Chlorobium_phaeobacteroides_BS1 1 1
Psychroflexus_torquis_ATCC_700755 1 1
Acidithiobacillus_ferrooxidans_ATCC_23270 1 1
Bdellovibrio_exovorus_JSS 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Geobacter_sp._M18 1 1
Anaeromyxobacter_sp._K 1 1
Anaeromyxobacter_dehalogenans_2CP-C 1 1
Myxococcus_stipitatus_DSM_14675 1 1
Pandoraea_pnomenusa_3kgm 1 1
Ralstonia_pickettii_12J 2 2
Ralstonia_solanacearum_FQY_4 2 2
Ralstonia_solanacearum_Po82 1 1
Ralstonia_solanacearum_PSI07 1 1
Ralstonia_solanacearum_GMI1000 2 2
Burkholderia_sp._YI23 3 3
Burkholderia_sp._KJ006 2 2
Burkholderia_thailandensis_MSMB121 1 1
Burkholderia_pseudomallei_MSHR305 5 5
Burkholderia_pseudomallei_NCTC_13179 5 5
Burkholderia_pseudomallei_BPC006 6 6
Burkholderia_pseudomallei_1026b 6 6
Burkholderia_pseudomallei_MSHR346 4 4
Burkholderia_pseudomallei_668 5 5
Burkholderia_pseudomallei_1710b 6 6
Burkholderia_pseudomallei_K96243 6 6
Burkholderia_mallei_NCTC_10229 3 3
Burkholderia_mallei_NCTC_10247 3 3
Burkholderia_mallei_ATCC_23344 3 3
Burkholderia_lata 3 3
Burkholderia_ambifaria_MC40-6 9 9
Burkholderia_cenocepacia_MC0-3 2 2
Burkholderia_cenocepacia_AU_1054 2 2
Burkholderia_cenocepacia_J2315 4 4
Burkholderia_multivorans_ATCC_17616 3 3
Burkholderia_cepacia_GG4 6 6
Variovorax_paradoxus_B4 2 2
Variovorax_paradoxus_EPS 2 2
Bordetella_pertussis_CS 1 1
Bordetella_parapertussis_18323 1 1
Bordetella_parapertussis_Bpp5 1 1
Bordetella_bronchiseptica_MO149 1 1
Bordetella_bronchiseptica_253 1 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 4 4
Octadecabacter_arcticus_238 1 1
Micavibrio_aeruginosavorus_EPB 1 1
Rickettsia_bellii_RML369-C 1 1
Rickettsia_massiliae_str._AZT80 1 1
Rickettsia_rickettsii_str._Arizona 1 1
Rickettsia_rickettsii_str._Brazil 1 1
Rickettsia_rickettsii_str._Hauke 1 1
Rickettsia_rickettsii_str._Colombia 1 1
Rickettsia_rickettsii__str._Hlp#2 1 1
Rickettsia_rickettsii_str._Hino 1 1
Rickettsia_rickettsii_str._Iowa 1 1
Sinorhizobium_meliloti_GR4 2 2
Sinorhizobium_meliloti_Rm41 1 1
Sinorhizobium_meliloti_SM11 1 1
Sinorhizobium_meliloti_BL225C 1 1
Sinorhizobium_meliloti_1021 1 1
Rhizobium_tropici_CIAT_899 1 1
Hyphomicrobium_denitrificans_1NES1 1 1
Haemophilus_parasuis_ZJ0906 1 1
Haemophilus_influenzae_KR494 1 1
Haemophilus_influenzae_F3047 6 6
Haemophilus_influenzae_F3031 5 5
Haemophilus_influenzae_PittGG 1 1
Haemophilus_influenzae_R2866 1 1
Aeromonas_hydrophila_ML09-119 4 4
Vibrio_sp._EJY3 1 1
Vibrio_parahaemolyticus_BB22OP 1 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1 1
Vibrio_nigripulchritudo_VibrioScope 1 1
Vibrio_vulnificus_CMCP6 1 1
Vibrio_vulnificus_YJ016 1 1
Shewanella_sp._W3-18-1 2 2
Shewanella_baltica_OS223 2 2
Shewanella_sp._MR-7 2 2
Shewanella_putrefaciens_200 2 2
Alcanivorax_dieselolei_B5 2 2
Stenotrophomonas_maltophilia_D457 5 5
Stenotrophomonas_maltophilia_JV3 7 7
Stenotrophomonas_maltophilia_R551-3 4 4
Xylella_fastidiosa_subsp._fastidiosa_GB514 1 1
Xylella_fastidiosa_M12 1 1
Xylella_fastidiosa_Temecula1 1 1
Xylella_fastidiosa_9a5c 1 1
Xanthomonas_citri_subsp._citri_Aw12879 2 2
Xanthomonas_campestris_pv._vesicatoria_str._85-10 2 2
Xanthomonas_axonopodis_pv._citrumelo_F1 2 2
Xanthomonas_axonopodis_Xac29-1 2 2
Xanthomonas_oryzae_pv._oryzicola_BLS256 2 2
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 2 2
Xanthomonas_oryzae_pv._oryzae_KACC_10331 2 2
Xanthomonas_campestris_pv._raphani_756C 2 2
Xanthomonas_campestris_pv._campestris_str._8004 2 2
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 2 2
Proteus_mirabilis_BB2000 18 18
Morganella_morganii_subsp._morganii_KT 9 9
Edwardsiella_tarda_C07-087 6 6
Edwardsiella_tarda_FL6-60 5 5
Rahnella_aquatilis_HX2 7 7
Yersinia_pseudotuberculosis_PB1/+ 13 13
Yersinia_pseudotuberculosis_YPIII 13 13
Yersinia_pseudotuberculosis_IP_32953 12 12
Yersinia_pestis_biovar_Microtus_str._91001 14 14
Yersinia_pestis_A1122 12 12
Yersinia_pestis_Z176003 11 11
Yersinia_pestis_D182038 14 14
Yersinia_pestis_D106004 14 14
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 11 11
Yersinia_pestis_Nepal516 12 12
Yersinia_pestis_Antiqua 14 14
Yersinia_pestis_Angola 12 12
Yersinia_pestis_CO92 14 14
Yersinia_pestis_KIM10+ 14 14
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 12 12
Yersinia_enterocolitica_subsp._palearctica_Y11 12 12
Serratia_sp._AS13 6 6
Serratia_plymuthica_S13 7 7
Serratia_plymuthica_4Rx13 7 7
Serratia_marcescens_FGI94 6 6
Serratia_marcescens_WW4 13 13
Serratia_liquefaciens_ATCC_27592 6 6
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 2 2
Pantoea_ananatis_LMG_5342 10 10
Pantoea_ananatis_PA13 8 8
Pantoea_ananatis_AJ13355 10 10
Erwinia_pyrifoliae_DSM_12163 3 3
Erwinia_amylovora_CFBP1430 3 3
Cronobacter_sakazakii_CMCC_45402 7 7
Cronobacter_sakazakii_SP291 9 9
Cronobacter_sakazakii_ATCC_BAA-894 9 9
Raoultella_ornithinolytica_B6 7 7
Shigella_sonnei_53G 12 12
Shigella_flexneri_2002017 7 7
Shigella_flexneri_2a_str._2457T 6 6
Shigella_flexneri_2a_str._301 5 5
Shigella_dysenteriae_1617 4 4
Shigella_boydii_Sb227 6 6
Salmonella_bongori_N268-08 10 10
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 6 6
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 13 13
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 15 15
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 14 14
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 15 15
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 14 14
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 13 13
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 15 15
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 15 15
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 13 13
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 13 13
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 14 14
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 14 14
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 14 14
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 14 14
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 13 13
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 13 13
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 13 13
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 14 14
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 14 14
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 14 14
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 13 13
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 13 13
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 14 14
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 14 14
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 14 14
Salmonella_enterica_serovar_Bovismorbificans_genomics 14 14
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 19 19
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 15 15
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 15 15
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 12 12
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 14 14
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 14 14
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 14 14
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 15 15
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 15 15
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 15 15
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 15 15
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 11 11
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 11 11
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 11 11
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 15 15
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 12 12
Klebsiella_oxytoca_KCTC_1686 18 18
Klebsiella_pneumoniae_JM45 11 11
Klebsiella_pneumoniae_CG43 14 14
Klebsiella_pneumoniae_KCTC_2242 13 13
Klebsiella_pneumoniae_342 12 12
Klebsiella_pneumoniae_subsp._pneumoniae_1084 11 11
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 9 9
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 16 16
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 9 9
Enterobacter_aerogenes_EA1509E 11 11
Escherichia_coli_E24377A 15 15
Escherichia_coli_E._coli_PMV-1 11 11
Escherichia_coli_JJ1886 10 10
Escherichia_coli_LY180 15 15
Escherichia_coli_APEC_O78 15 15
Escherichia_coli_O7:K1_str._CE10 14 14
Escherichia_coli_O104:H4_str._2009EL-2050 15 15
Escherichia_coli_O104:H4_str._2009EL-2071 15 15
Escherichia_coli_O104:H4_str._2011C-3493 15 15
Escherichia_coli_NA114 8 8
Escherichia_coli_P12b 9 9
Escherichia_coli_str._'clone_D_i2' 11 11
Escherichia_coli_str._'clone_D_i14' 11 11
Escherichia_coli_UM146 13 13
Escherichia_coli_042 13 13
Escherichia_coli_Xuzhou21 17 17
Escherichia_coli_IHE3034 11 11
Escherichia_coli_UMNK88 13 13
Escherichia_coli_O83:H1_str._NRG_857C 11 11
Escherichia_coli_ABU_83972 12 12
Escherichia_coli_KO11FL 17 17
Escherichia_coli_KO11FL 17 17
Escherichia_coli_LF82 11 11
Escherichia_coli_ED1a 10 10
Escherichia_coli_IAI39 14 14
Escherichia_coli_UMN026 14 14
Escherichia_coli_55989 15 15
Escherichia_coli_S88 10 10
Escherichia_coli_IAI1 16 16
Escherichia_coli_W 17 17
Escherichia_coli_W 17 17
Escherichia_coli_DH1 13 13
Escherichia_coli_DH1 13 13
Escherichia_coli_ATCC_8739 12 12
Escherichia_coli_BL21(DE3) 11 11
Escherichia_coli_BL21(DE3) 11 11
Escherichia_coli_SMS-3-5 12 12
Escherichia_coli_SE15 10 10
Escherichia_coli_SE11 20 20
Escherichia_coli_APEC_O1 11 11
Escherichia_coli_O103:H2_str._12009 15 15
Escherichia_coli_UTI89 13 13
Escherichia_coli_536 16 16
Escherichia_coli_HS 11 11
Escherichia_coli_ETEC_H10407 12 12
Escherichia_coli_O55:H7_str._RM12579 16 16
Escherichia_coli_O55:H7_str._CB9615 16 16
Escherichia_coli_O26:H11_str._11368 16 16
Escherichia_coli_CFT073 13 13
Escherichia_coli_O111:H-_str._11128 13 13
Escherichia_coli_O127:H6_str._E2348/69 6 6
Escherichia_coli_O157:H7_str._TW14359 17 17
Escherichia_coli_O157:H7_str._EC4115 15 15
Escherichia_coli_O157:H7_str._Sakai 17 17
Escherichia_coli_O157:H7_str._EDL933 17 17
Escherichia_coli_str._K-12_substr._MDS42 8 8
Escherichia_coli_BW2952 11 11
Escherichia_coli_str._K-12_substr._MG1655 13 13
Escherichia_coli_str._K-12_substr._W3110 13 13
Escherichia_coli_str._K-12_substr._DH10B 12 12
Escherichia_coli_B_str._REL606 11 11
Enterobacter_cloacae_SCF1 16 16
Enterobacter_cloacae_EcWSU1 10 10
Enterobacter_cloacae_subsp._cloacae_ENHKU01 14 14
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 14 14
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 17 17
Pseudomonas_denitrificans_ATCC_13867 3 3
Pseudomonas_syringae_pv._phaseolicola_1448A 3 3
Pseudomonas_syringae_pv._syringae_B728a 3 3
Pseudomonas_monteilii_SB3101 2 2
Pseudomonas_monteilii_SB3078 2 2
Pseudomonas_putida_H8234 2 2
Pseudomonas_putida_HB3267 2 2
Pseudomonas_putida_NBRC_14164 3 3
Pseudomonas_putida_DOT-T1E 5 5
Pseudomonas_putida_S16 2 2
Pseudomonas_putida_BIRD-1 4 4
Pseudomonas_putida_W619 2 2
Pseudomonas_putida_ND6 5 5
Pseudomonas_putida_KT2440 2 2
Pseudomonas_putida_GB-1 3 3
Pseudomonas_protegens_CHA0 4 4
Pseudomonas_poae_RE*1-1-14 7 7
Pseudomonas_fluorescens_F113 1 1
Pseudomonas_fluorescens_A506 9 9
Pseudomonas_fluorescens_R124 4 4
Pseudomonas_fluorescens_Pf0-1 3 3
Pseudomonas_resinovorans_NBRC_106553 3 3
Pseudomonas_mendocina_NK-01 1 1
Pseudomonas_aeruginosa_SCV20265 6 6
Pseudomonas_aeruginosa_MTB-1 6 6
Pseudomonas_aeruginosa_LES431 7 7
Pseudomonas_aeruginosa_RP73 7 7
Pseudomonas_aeruginosa_B136-33 6 6
Pseudomonas_aeruginosa_PA1R 5 5
Pseudomonas_aeruginosa_PA1 6 6
Pseudomonas_aeruginosa_DK2 7 7
Pseudomonas_aeruginosa_NCGM2.S1 5 5
Pseudomonas_aeruginosa_M18 7 7
Pseudomonas_aeruginosa_LESB58 7 7
Pseudomonas_aeruginosa_PA7 6 6
Pseudomonas_aeruginosa_PAO1 7 7
Acinetobacter_genomosp._13TU__RUH2624 6 6
Acinetobacter_sp.__SH024 5 5
Acinetobacter_calcoaceticus_ruh2202 4 4
Acinetobacter_baumannii_ZW85-1 4 4
Acinetobacter_baumannii_TYTH-1 3 3
Acinetobacter_baumannii_BJAB0868 3 3
Acinetobacter_baumannii_BJAB0715 4 4
Acinetobacter_baumannii_BJAB07104 3 3
Acinetobacter_baumannii_TCDC-AB0715 4 4
Acinetobacter_baumannii_D1279779 3 3
Acinetobacter_baumannii_MDR-TJ 3 3
Acinetobacter_baumannii_1656-2 3 3
Acinetobacter_baumannii__ATCC_19606 4 4
Acinetobacter_baumannii_AB307-0294 4 4
Acinetobacter_baumannii_AYE 4 4
Acinetobacter_baumannii_MDR-ZJ06 2 2
Acinetobacter_baumannii_AB0057 4 4
Acinetobacter_baumannii_ACICU 3 3
Acinetobacter_junii__SH205 1 1
Acinetobacter_johnsonii__SH046 1 1
Acinetobacter_lwoffii__SH145 1 1
Methanococcus_maripaludis_C6 1 1
Methanococcus_maripaludis_C7 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   6 6
Pan_troglodytes_69_2.1.4   (Chimpanzee)   7 7
Gorilla_gorilla_69_3.1   (Western gorilla)   6 6
Pongo_abelii_69_2   (Sumatran orangutan)   5 5
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   5 5
Macaca_mulatta_69_1   (Rhesus monkey)   8 8
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   5 5
Otolemur_garnettii_69_3   (Small-eared galago)   8 8
Microcebus_murinus_69_1   (Gray mouse lemur)   5 5
Rattus_norvegicus_69_3.4   (Norway rat)   8 8
Mus_musculus_69_38   (House mouse)   7 7
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   5 5
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   5 5
Cavia_porcellus_69_3   (Domestic guinea pig)   6 6
Oryctolagus_cuniculus_69_2   (Rabbit)   6 6
Ochotona_princeps_69   (American pika)   4 4
Tupaia_belangeri_69   (Northern tree shrew)   6 6
Sus_scrofa_69_10.2   (Pig)   7 7
Bos_taurus_69_3.1   (Cattle)   7 7
Vicugna_pacos_69_1   (Alpaca)   5 5
Tursiops_truncatus_69_1   (Bottlenose dolphin)   5 5
Mustela_putorius_furo_69_1.0   (Domestic ferret)   5 5
Ailuropoda_melanoleuca_69_1   (Giant panda)   5 5
Canis_familiaris_69_3.1   (Dog)   6 6
Felis_catus_69   (Domestic cat)   5 5
Equus_caballus_69_2   (Horse)   6 6
Myotis_lucifugus_69_2.0   (Little brown bat)   8 7
Pteropus_vampyrus_69_1   (Large flying fox)   6 6
Sorex_araneus_69_1   (European shrew)   4 4
Erinaceus_europaeus_69   (Western European hedgehog)   7 7
Procavia_capensis_69_1   (Cape rock hyrax)   4 4
Loxodonta_africana_69_3   (African savanna elephant)   7 7
Echinops_telfairi_69   (Small Madagascar hedgehog)   6 6
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   4 4
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   4 4
Macropus_eugenii_69_1.0   (Tammar wallaby)   4 4
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   8 8
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   7 7
Ornithorhynchus_anatinus_69_5   (Platypus)   5 5
Petromyzon_marinus_69_7.0   (Sea lamprey)   5 5
Meleagris_gallopavo_69_2   (Turkey)   4 4
Gallus_gallus_69_2   (Chicken)   4 4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   7 7
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   4 4
Anolis_carolinensis_69_2.0   (Green anole)   7 7
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   7 7
Latimeria_chalumnae_69_1   (Coelacanth)   5 5
Gadus_morhua_69_1   (Atlantic cod)   5 5
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   5 5
Takifugu_rubripes_69_4   (Torafugu)   7 7
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   5 5
Oryzias_latipes_69_1   (Japanese medaka)   5 5
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   5 5
Oreochromis_niloticus_69_1.0   (Nile tilapia)   7 7
Danio_rerio_69_9   (Zebrafish)   5 5
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2 2
Ciona_intestinalis_69   (Vase tunicate)   5 5
Drosophila_melanogaster_69_5   (Fruit fly)   5 5
Caenorhabditis_elegans_69_215   (Roundworm)   115 115
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   2 2
Arabidopsis_thaliana_10   (Thale cress)   11 10

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   22 22
Homo_sapiens__(NCBI_version)   (Human)   13 13
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   7 7
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   31 31
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   23 23
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   27 26
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   3 3
Lotus_japonicus__(Early_assembly) 15 15
Malus_x_domestica_(Duplicate)   (Apple)   21 20
Ricinus_communis__(Early_assembly)   (Castor bean)   15 15
Nicotiana_benthamiana_0.4.4_(Early_draft) 28 28
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   18 18
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   18 18
Phoenix_dactylifera__(Early_draft)   (Date palm)   12 11
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 4 4
NCBI_plasmid_sequences_(Plasmids) 115 115
TargetDB__(Targets) 131 131
PDB_chains_(SCOP_1.75)_(PDB) 17 17
Protein_Data_Bank_(all_PDB_sequenc) 161 161
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 401 401
Protozoadb_2010_08_(Protozoadb) 98 92
STRING_v9.0.5_(STRING) 2332 2316
Uniprot_2018_03_genome 30049 29731
NCBI_2017_08_genome 330020 329894

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