SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for Carboxypeptidase regulatory domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Carboxypeptidase regulatory domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   50 46
Pan_troglodytes_76_2.1.4   (Chimpanzee)   16 12
Gorilla_gorilla_76_3.1   (Western gorilla)   14 14
Pongo_abelii_76_2   (Sumatran orangutan)   15 13
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   15 13
Papio_anubis_76   (Olive baboon)   18 16
Macaca_mulatta_76_1   (Rhesus monkey)   18 18
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   34 28
Otolemur_garnettii_76_3   (Small-eared galago)   16 14
Microcebus_murinus_76_1   (Gray mouse lemur)   13 12
Rattus_norvegicus_76_5.0   (Norway rat)   16 14
Mus_musculus_76_38   (House mouse)   21 19
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   13 12
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   13 11
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   15 13
Cavia_porcellus_76_3   (Domestic guinea pig)   15 13
Oryctolagus_cuniculus_76_2   (Rabbit)   21 19
Ochotona_princeps_76   (American pika)   6 5
Tupaia_belangeri_76   (Northern tree shrew)   10 8
Sus_scrofa_76_10.2   (Pig)   16 14
Bos_taurus_76_3.1   (Cattle)   18 17
Ovis_aries_76_3.1   (Sheep)   17 15
Vicugna_pacos_76_1   (Alpaca)   5 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   15 13
Mustela_putorius_furo_76_1.0   (Domestic ferret)   15 13
Ailuropoda_melanoleuca_76_1   (Giant panda)   20 16
Canis_familiaris_76_3.1   (Dog)   19 17
Felis_catus_76_6.2   (Domestic cat)   16 14
Equus_caballus_76_2   (Horse)   22 20
Myotis_lucifugus_76_2.0   (Little brown bat)   14 12
Pteropus_vampyrus_76_1   (Large flying fox)   14 12
Sorex_araneus_76_1   (European shrew)   10 8
Erinaceus_europaeus_76   (Western European hedgehog)   9 7
Procavia_capensis_76_1   (Cape rock hyrax)   14 12
Loxodonta_africana_76_3   (African savanna elephant)   23 19
Echinops_telfairi_76   (Small Madagascar hedgehog)   8 8
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   14 12
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   9 7
Macropus_eugenii_76_1.0   (Tammar wallaby)   11 10
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   14 13
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   18 16
Ornithorhynchus_anatinus_76_5   (Platypus)   15 13
Saccoglossus_kowalevskii_v3.0 16 11
Petromyzon_marinus_76_7.0   (Sea lamprey)   4 4
Meleagris_gallopavo_76_2   (Turkey)   15 14
Gallus_gallus_76_4   (Chicken)   18 16
Anas_platyrhynchos_76_1.0   (Mallard)   14 12
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   14 12
Ficedula_albicollis_76_1.0   (Collared flycatcher)   16 14
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   16 14
Anolis_carolinensis_76_2.0   (Green anole)   13 13
Xenopus_laevis_   (African clawed frog)   6 6
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   17 16
Latimeria_chalumnae_76_1   (Coelacanth)   14 12
Lepisosteus_oculatus_76   (Spotted gar)   23 20
Gadus_morhua_76_1   (Atlantic cod)   17 15
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   16 14
Takifugu_rubripes_76_4   (Torafugu)   67 65
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   22 20
Oryzias_latipes_76_1   (Japanese medaka)   30 28
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   19 18
Poecilia_formosa_76   (Amazon molly)   21 19
Oreochromis_niloticus_76_1.0   (Nile tilapia)   31 27
Astyanax_mexicanus_76   (Mexican tetra)   22 18
Danio_rerio_76_9   (Zebrafish)   38 32
Oikopleura_dioica 5 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   15 15
Ciona_intestinalis_76   (Vase tunicate)   4 4
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   10 8
Adineta_vaga 17 13
Octopus_bimaculoides_280 11 8
Crassostrea_gigas_22   (Pacific oyster)   9 4
Lottia_gigantea_   (Owl limpet)   5 3
Helobdella_robusta_ 3 3
Capitella_sp._I_ 6 4
Danaus_plexippus_OGS1.0   (Monarch butterfly)   6 4
Heliconius_melpomene_   (Postman butterfly)   6 3
Bombyx_mori_   (Domestic silkworm)   4 4
Nasonia_vitripennis_   (Jewel wasp)   2 2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   24 15
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   6 3
Linepithema_humile_v1.1   (Argentine ant)   5 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   5 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   6 3
Atta_cephalotes_v1.1 6 3
Camponotus_floridanus_v3.3   (Florida carpenter ant)   6 3
Lucilia_cuprina   (Australian sheep blowfly)   5 2
Drosophila_grimshawi_1.3 5 2
Drosophila_willistoni_1.3 6 3
Drosophila_pseudoobscura_2.13 6 3
Drosophila_persimilis_1.3 6 3
Drosophila_suzukii 4 2
Drosophila_yakuba_1.3 5 2
Drosophila_simulans_1.3 5 2
Drosophila_sechellia_1.3 5 2
Drosophila_melanogaster_76_5   (Fruit fly)   34 16
Drosophila_erecta_1.3 6 3
Drosophila_ananassae_1.3 5 2
Drosophila_virilis_1.2 6 3
Drosophila_mojavensis_1.3 5 2
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   4 2
Anopheles_darlingi_22   (American malaria mosquito)   5 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   5 2
Tribolium_castaneum_3.0   (Red flour beetle)   9 7
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   6 5
Acyrthosiphon_pisum_   (Pea aphid)   6 4
Rhodnius_prolixus_22 8 7
Daphnia_pulex_   (Common water flea)   10 8
Strigamia_maritima_22 8 5
Sarcoptes_scabiei 7 6
Tetranychus_urticae_   (Two-spotted spider mite)   7 5
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   7 7
Pristionchus_pacificus_ 3 3
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 4 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   3 3
Caenorhabditis_japonica_ 3 3
Caenorhabditis_brenneri_ 3 3
Caenorhabditis_remanei_ 3 3
Caenorhabditis_elegans_76_235   (Roundworm)   5 5
Caenorhabditis_briggsae_2 3 3
Trichinella_spiralis_22 3 3
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 1 1
Echinococcus_granulosus_ 1 1
Taenia_solium_   (Pork tapeworm)   2 2
Schistosoma_mansoni_ 6 3
Mnemiopsis_leidyi   (Sea walnut)   3 3
Thelohanellus_kitauei 2 2
Acropora_digitifera_v1.0 9 6
Nematostella_vectensis_1.0   (Starlet sea anemone)   11 9
Hydra_vulgaris 6 4
Amphimedon_queenslandica 3 2
Trichoplax_adhaerens_ 8 8
Proterospongia_sp._ATCC_50818_ 4 2
Monosiga_brevicollis_ 6 5
Sphaeroforma_arctica_JP610_ 19 12
Capsaspora_owczarzaki_ATCC_30864_ 4 1
Zasmidium_cellare_ATCC_36951_v1.0 1 1
Dictyostelium_discoideum 1 1
Dictyostelium_purpureum_ 2 2
Selaginella_moellendorffii_ 8 6
Picea_abies   (Norway spruce)   1 1
Eucalyptus_grandis_v201   (Rose gum)   3 3
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2 2
Gossypium_raimondii_v221 5 5
Citrus_clementina_v165 2 2
Citrus_sinensis_v154   (Sweet orange)   5 5
Thellungiella_halophila_v173 2 2
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2 2
Capsella_rubella_v183 2 2
Arabidopsis_lyrata_   (Lyrate rockcress)   1 1
Arabidopsis_thaliana_10   (Thale cress)   2 2
Carica_papaya_   (Papaya)   2 2
Medicago_truncatula_   (Barrel medic)   2 2
Phaseolus_vulgaris_v186   (French bean)   3 3
Glycine_max_v109   (Soybean)   4 4
Cucumis_sativus_v122   (Cucumber)   3 3
Fragaria_vesca_   (Wild strawberry)   2 2
Malus_domestica_v196   (Apple)   3 3
Prunus_persica_v139   (Peach)   2 2
Linum_usitatissimum_v200   (Flax)   2 2
Manihot_esculenta_v147   (Cassava)   2 2
Populus_trichocarpa_v156   (Black cottonwood)   4 3
Vitis_vinifera_   (Wine grape)   1 1
Mimulus_guttatus_v140   (Spotted monkey flower)   2 2
Solanum_lycopersicum_v.2.3   (Tomato)   2 2
Actinidia_chinensis_Hongyang_ 2 1
Aquilegia_coerulea_v195 6 6
Triticum_aestivum_22   (Bread wheat)   4 4
Aegilops_tauschii_22 1 1
Brachypodium_distachyon_   (Stiff brome)   1 1
Oryza_barthii_22   (African wild rice)   2 2
Oryza_meridionalis_22 1 1
Oryza_glumaepatula_22 2 2
Oryza_glaberrima   (African rice)   2 2
Oryza_punctata_22 3 3
Oryza_nivara_22 2 2
Oryza_brachyantha_22   (Malo sina)   2 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1 1
Oryza_sativa_v193   (Rice)   1 1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   4 4
Panicum_virgatum_v202   (Switchgrass)   4 4
Setaria_italica_v164   (Foxtail millet)   3 3
Zea_mays_subsp._mays_   (Maize)   5 5
Zea_mays_v181   (Maize)   5 5
Sorghum_bicolor_   (Sorghum)   3 3
Musa_balbisiana   (Balbis banana)   1 1
Musa_acuminata_22   (Wild Malaysian banana)   2 2
Amborella_trichopoda_22 2 2
Physcomitrella_patens 4 4
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_vulgaris_ 1 1
Micromonas_sp._RCC299_ 1 1
Thecamonas_trahens_ATCC_50062_ 1 1
Cyanophora_paradoxa_ 2 2
Trypanosoma_cruzi_strain_CL_Brener 1 1
Paramecium_tetraurelia_ 3 3
Ichthyophthirius_multifiliis_strain_G5_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 2 2
Naegleria_gruberi_ 4 4
Trichomonas_vaginalis_ 2 2
Guillardia_theta_CCMP2712_v1.0_ 2 2
Emiliania_huxleyi_CCMP1516_ 3 1
Thermobaculum_terrenum_ATCC_BAA-798 4 4
Leptolyngbya_sp._PCC_7376 3 2
Thermosynechococcus_sp._NK55 1 1
Thermosynechococcus_elongatus_BP-1 1 1
Synechococcus_sp._PCC_6312 1 1
Trichodesmium_erythraeum_IMS101 2 2
Halothece_sp._PCC_7418 1 1
Gloeobacter_violaceus_PCC_7421 7 7
Rivularia_sp._PCC_7116 2 2
Calothrix_sp._PCC_7507 2 1
Nostoc_punctiforme_PCC_73102 2 2
Nostoc_sp._PCC_7524 1 1
Anabaena_sp._90 2 2
Conexibacter_woesei_DSM_14684 1 1
Ilumatobacter_coccineus 2 2
Nakamurella_multipartita_DSM_44233 4 3
Kineococcus_radiotolerans_SRS30216 3 3
Catenulispora_acidiphila_DSM_44928 4 2
Stackebrandtia_nassauensis_DSM_44728 3 2
Thermobifida_fusca_YX 1 1
Streptosporangium_roseum_DSM_43021 1 1
Streptomyces_coelicolor_A3(2) 7 6
Streptomyces_sp._PAMC26508 4 3
Streptomyces_flavogriseus_ATCC_33331 4 3
Streptomyces_sp._SirexAA-E 4 3
Streptomyces_griseus_subsp._griseus_NBRC_13350 5 4
Streptomyces_bingchenggensis_BCW-1 8 5
Streptomyces_violaceusniger_Tu_4113 8 5
Streptomyces_avermitilis_MA-4680 7 6
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 10 5
Streptomyces_scabiei_87.22 3 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 13 10
Actinosynnema_mirum_DSM_43827 4 3
Saccharomonospora_viridis_DSM_43017 1 1
Pseudonocardia_dioxanivorans_CB1190 9 7
Saccharopolyspora_erythraea_NRRL_2338 2 1
Amycolatopsis_mediterranei_U32 4 2
Kribbella_flavida_DSM_17836 4 2
Nocardioides_sp._JS614 2 2
Propionibacterium_propionicum_F0230a 1 1
Microlunatus_phosphovorus_NM-1 5 5
Salinispora_arenicola_CNS-205 2 2
Salinispora_tropica_CNB-440 3 3
Verrucosispora_maris_AB-18-032 4 2
Micromonospora_sp._L5 7 4
Micromonospora_aurantiaca_ATCC_27029 7 4
Actinoplanes_sp._N902-109 11 5
Actinoplanes_missouriensis_431 1 1
Segniliparus_rotundus_DSM_44985 1 1
Tsukamurella_paurometabola_DSM_20162 1 1
Gordonia_sp._KTR9 1 1
Gordonia_polyisoprenivorans_VH2 3 3
Gordonia_bronchialis_DSM_43247 2 2
Rhodococcus_equi_103S 1 1
Rhodococcus_opacus_B4 1 1
Rhodococcus_erythropolis_PR4 1 1
Nocardia_cyriacigeorgica_GUH-2 2 2
Nocardia_farcinica_IFM_10152 1 1
Amycolicicoccus_subflavus_DQS3-9A1 1 1
Mycobacterium_sp._JLS 1 1
Mycobacterium_intracellulare_ATCC_13950 1 1
Mycobacterium_avium_104 1 1
Mycobacterium_vanbaalenii_PYR-1 1 1
Mycobacterium_canettii_CIPT_140010059 1 1
Mycobacterium_africanum_GM041182 2 2
Mycobacterium_tuberculosis_KZN_1435 2 2
Mycobacterium_tuberculosis 2 2
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1 1
Mycobacterium_rhodesiae_NBB3 1 1
Mycobacterium_gilvum_PYR-GCK 1 1
Mycobacterium_chubuense_NBB4 1 1
Mycobacterium_smegmatis_str._MC2_155 1 1
Mycobacterium_leprae_Br4923 1 1
Corynebacterium_efficiens_YS-314 2 1
Sanguibacter_keddieii_DSM_10542 6 4
Beutenbergia_cavernae_DSM_12333 5 2
Microbacterium_testaceum_StLB037 1 1
Intrasporangium_calvum_DSM_43043 1 1
Cellulomonas_fimi_ATCC_484 3 2
[Cellvibrio]_gilvus_ATCC_13127 1 1
Arthrobacter_phenanthrenivorans_Sphe3 1 1
Arthrobacter_chlorophenolicus_A6 2 2
Arthrobacter_aurescens_TC1 2 2
Arthrobacter_sp._Rue61a 2 2
Arthrobacter_sp._FB24 2 2
Renibacterium_salmoninarum_ATCC_33209 2 1
Dehalogenimonas_lykanthroporepellens_BL-DC-9 1 1
Anaerolinea_thermophila_UNI-1 2 2
Thermomicrobium_roseum_DSM_5159 2 1
Sphaerobacter_thermophilus_DSM_20745 2 1
Herpetosiphon_aurantiacus_DSM_785 16 9
Roseiflexus_sp._RS-1 7 5
Roseiflexus_castenholzii_DSM_13941 6 4
Chloroflexus_sp._MS-G 5 3
Chloroflexus_sp._Y-400-fl 7 4
Chloroflexus_aggregans_DSM_9485 6 3
Chloroflexus_aurantiacus_J-10-fl 7 4
Truepera_radiovictrix_DSM_17093 1 1
Deinococcus_gobiensis_I-0 1 1
Deinococcus_deserti_VCD115 2 2
Deinococcus_maricopensis_DSM_21211 2 2
Deinococcus_geothermalis_DSM_11300 2 2
Deinococcus_proteolyticus_MRP 1 1
Oceanithermus_profundus_DSM_14977 3 3
Meiothermus_silvanus_DSM_9946 1 1
Meiothermus_ruber_DSM_1279 1 1
Thermus_sp._CCB_US3_UF1 1 1
Natranaerobius_thermophilus_JW/NM-WN-LF 4 3
Symbiobacterium_thermophilum_IAM_14863 12 3
Clostridium_clariflavum_DSM_19732 7 7
Clostridium_thermocellum_ATCC_27405 4 4
Ethanoligenens_harbinense_YUAN-3 2 2
Oscillibacter_valericigenes_Sjm18-20 3 2
Thermincola_potens_JR 2 2
Desulfosporosinus_acidiphilus_SJ4 7 6
Desulfosporosinus_orientis_DSM_765 4 4
Desulfitobacterium_hafniense_Y51 2 2
Desulfitobacterium_dehalogenans_ATCC_51507 5 3
Desulfotomaculum_reducens_MI-1 2 2
Desulfotomaculum_acetoxidans_DSM_771 3 3
Desulfotomaculum_kuznetsovii_DSM_6115 2 2
Desulfotomaculum_carboxydivorans_CO-1-SRB 3 1
Eubacterium_limosum_KIST612 1 1
Clostridium_saccharolyticum_WM1 2 2
Clostridium_lentocellum_DSM_5427 1 1
Coprococcus_sp._ART55/1 1 1
Roseburia_hominis_A2-183 2 1
Butyrivibrio_proteoclasticus_B316 1 1
Syntrophothermus_lipocalidus_DSM_12680 1 1
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 1 1
Clostridium_ljungdahlii_DSM_13528 2 2
Clostridium_kluyveri_DSM_555 2 2
Clostridium_perfringens_ATCC_13124 1 1
Clostridium_cellulovorans_743B 2 2
Clostridium_botulinum_A_str._ATCC_3502 1 1
Clostridium_acetobutylicum_ATCC_824 3 2
Caldicellulosiruptor_kronotskyensis_2002 1 1
Caldicellulosiruptor_bescii_DSM_6725 1 1
Thermodesulfobium_narugense_DSM_14796 3 2
Halothermothrix_orenii_H_168 4 3
Halanaerobium_hydrogeniformans 1 1
Brevibacillus_brevis_NBRC_100599 9 2
Paenibacillus_sp._JDR-2 2 2
Paenibacillus_terrae_HPL-003 4 3
Paenibacillus_mucilaginosus_3016 4 4
Paenibacillus_polymyxa_M1 5 3
Solibacillus_silvestris_StLB046 2 1
Oceanobacillus_iheyensis_HTE831 2 1
Bacillus_sp._JS 2 1
Bacillus_amyloliquefaciens_FZB42 2 1
Bacillus_atrophaeus_1942 2 1
Bacillus_subtilis_subsp._subtilis_str._168 3 2
Bacillus_licheniformis_DSM_13_=_ATCC_14580 2 1
Bacillus_thuringiensis_str._Al_Hakam 1 1
Bacillus_pseudofirmus_OF4 2 1
Bacillus_cellulosilyticus_DSM_2522 1 1
Bacillus_pumilus_SAFR-032 2 1
Candidatus_Cloacamonas_acidaminovorans 13 8
Gemmatimonas_aurantiaca_T-27 42 41
Melioribacter_roseus_P3M 34 30
Ignavibacterium_album_JCM_16511 24 24
Pelodictyon_phaeoclathratiforme_BU-1 1 1
Chlorobium_luteolum_DSM_273 1 1
Chlorobium_phaeobacteroides_DSM_266 1 1
Chlorobium_phaeovibrioides_DSM_265 2 2
Chlorobium_limicola_DSM_245 4 4
Chlorobaculum_parvum_NCIB_8327 1 1
Chlorobium_tepidum_TLS 1 1
Chloroherpeton_thalassium_ATCC_35110 21 21
Prosthecochloris_aestuarii_DSM_271 4 4
Haliscomenobacter_hydrossis_DSM_1100 105 105
Saprospira_grandis_str._Lewin 30 29
Niastella_koreensis_GR20-10 196 192
Chitinophaga_pinensis_DSM_2588 174 174
Salinibacter_ruber_M8 29 27
Rhodothermus_marinus_DSM_4252 24 24
Flexibacter_litoralis_DSM_6794 37 36
Candidatus_Amoebophilus_asiaticus_5a2 1 1
Belliella_baltica_DSM_15883 34 34
Cyclobacterium_marinum_DSM_745 101 101
Marivirga_tractuosa_DSM_4126 53 53
Fibrella_aestuarina 109 108
Leadbetterella_byssophila_DSM_17132 69 69
Dyadobacter_fermentans_DSM_18053 154 154
Cytophaga_hutchinsonii_ATCC_33406 15 15
Spirosoma_linguale_DSM_74 133 133
Runella_slithyformis_DSM_19594 100 100
Parabacteroides_distasonis_ATCC_8503 88 88
Tannerella_forsythia_ATCC_43037 69 69
Paludibacter_propionicigenes_WB4 53 53
Odoribacter_splanchnicus_DSM_20712 87 86
Bacteroides_sp._CF50 37 37
Prevotella_melaninogenica_ATCC_25845 43 43
Prevotella_intermedia_17 19 19
Prevotella_denticola_F0289 39 39
Prevotella_ruminicola_23 49 49
Porphyromonas_asaccharolytica_DSM_20707 18 18
Porphyromonas_gingivalis_ATCC_33277 15 15
Alistipes_finegoldii_DSM_17242 43 42
Bacteroides_salanitronis_DSM_18170 45 45
Bacteroides_helcogenes_P_36-108 66 66
Bacteroides_vulgatus_ATCC_8482 101 101
Bacteroides_thetaiotaomicron_VPI-5482 127 127
Bacteroides_fragilis_YCH46 99 98
Pedobacter_saltans_DSM_12145 81 81
Solitalea_canadensis_DSM_3403 90 89
Pedobacter_heparinus_DSM_2366 128 128
Sphingobacterium_sp._21 160 159
Fluviicola_taffensis_DSM_16823 24 24
Owenweeksia_hongkongensis_DSM_17368 44 44
Zunongwangia_profunda_SM-A87 106 106
Krokinobacter_sp._4H-3-7-5 45 44
Gramella_forsetii_KT0803 48 48
Lacinutrix_sp._5H-3-7-4 41 41
Maribacter_sp._HTCC2170 42 42
Robiginitalea_biformata_HTCC2501 32 32
Croceibacter_atlanticus_HTCC2559 38 38
Aequorivita_sublithincola_DSM_14238 35 34
Zobellia_galactanivorans 123 123
Muricauda_ruestringensis_DSM_13258 57 57
Cellulophaga_algicola_DSM_14237 75 75
Cellulophaga_lytica_DSM_7489 75 75
Flavobacteriaceae_bacterium_3519-10 10 10
Polaribacter_sp._MED152 40 40
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 9 9
Ornithobacterium_rhinotracheale_DSM_15997 20 20
Capnocytophaga_canimorsus_Cc5 28 28
Capnocytophaga_ochracea_DSM_7271 38 38
Weeksella_virosa_DSM_16922 17 17
Flavobacterium_indicum_GPTSA100-9 28 28
Flavobacterium_psychrophilum_JIP02/86 29 29
Flavobacterium_branchiophilum_FL-15 31 31
Flavobacterium_columnare_ATCC_49512 21 21
Flavobacterium_johnsoniae_UW101 97 97
Fibrobacter_succinogenes_subsp._succinogenes_S85 8 8
Isosphaera_pallida_ATCC_43644 7 7
Planctomyces_brasiliensis_DSM_5305 9 9
Planctomyces_limnophilus_DSM_3776 6 6
Rhodopirellula_baltica_SH_1 7 5
Pirellula_staleyi_DSM_6068 6 6
Coraliomargarita_akajimensis_DSM_45221 2 2
Opitutus_terrae_PB90-1 4 4
Turneriella_parva_DSM_21527 8 8
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 2 2
Leptospira_interrogans_serovar_Lai_str._IPAV 3 3
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 3 3
Treponema_azotonutricium_ZAS-9 1 1
Treponema_primitia_ZAS-2 2 2
Treponema_brennaborense_DSM_12168 1 1
Treponema_denticola_ATCC_35405 2 2
Spirochaeta_africana_DSM_8902 2 2
Thermodesulfatator_indicus_DSM_15286 1 1
Desulfurispirillum_indicum_S5 1 1
Deferribacter_desulfuricans_SSM1 1 1
Flexistipes_sinusarabici_DSM_4947 1 1
Marinitoga_piezophila_KA3 1 1
Mesotoga_prima_MesG1.Ag.4.2 1 1
Thermotoga_lettingae_TMO 4 4
Thermotoga_thermarum_DSM_5069 1 1
Persephonella_marina_EX-H1 1 1
Dictyoglomus_thermophilum_H-6-12 2 2
Caldisericum_exile_AZM16c01 2 2
Candidatus_Chloracidobacterium_thermophilum_B 17 17
Candidatus_Solibacter_usitatus_Ellin6076 117 116
Granulicella_tundricola_MP5ACTX9 59 54
Granulicella_mallensis_MP5ACTX8 95 95
Candidatus_Koribacter_versatilis_Ellin345 41 40
Terriglobus_saanensis_SP1PR4 64 64
Terriglobus_roseus_DSM_18391 63 63
Acidobacterium_capsulatum_ATCC_51196 35 35
Candidatus_Nitrospira_defluvii 4 4
Ilyobacter_polytropus_DSM_2926 2 2
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 2 2
Bacteriovorax_marinus_SJ 1 1
Nautilia_profundicola_AmH 1 1
Nitratifractor_salsuginis_DSM_16511 2 2
Desulfarculus_baarsii_DSM_2075 4 3
Desulfobacca_acetoxidans_DSM_11109 3 3
Desulfomonile_tiedjei_DSM_6799 1 1
Syntrophobacter_fumaroxidans_MPOB 3 3
Desulfurivibrio_alkaliphilus_AHT2 3 3
Desulfobulbus_propionicus_DSM_2032 1 1
Desulfatibacillum_alkenivorans_AK-01 9 9
Desulfococcus_oleovorans_Hxd3 4 4
Desulfovibrio_aespoeensis_Aspo-2 1 1
Lawsonia_intracellularis_PHE/MN1-00 1 1
Desulfovibrio_alaskensis_G20 2 2
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1 1
Geobacter_daltonii_FRC-32 10 7
Geobacter_uraniireducens_Rf4 9 6
Geobacter_lovleyi_SZ 2 2
Geobacter_sulfurreducens_KN400 3 2
Geobacter_metallireducens_GS-15 5 4
Pelobacter_propionicus_DSM_2379 1 1
Pelobacter_carbinolicus_DSM_2380 1 1
Haliangium_ochraceum_DSM_14365 18 13
Sorangium_cellulosum_'So_ce_56' 18 13
Anaeromyxobacter_sp._Fw109-5 6 5
Anaeromyxobacter_dehalogenans_2CP-1 7 5
Stigmatella_aurantiaca_DW4/3-1 23 17
Corallococcus_coralloides_DSM_2259 48 23
Myxococcus_xanthus_DK_1622 25 17
Myxococcus_fulvus_HW-1 19 13
Dechloromonas_aromatica_RCB 1 1
Azoarcus_sp._BH72 1 1
Aromatoleum_aromaticum_EbN1 2 2
Pseudogulbenkiania_sp._NH8B 1 1
Burkholderia_phytofirmans_PsJN 1 1
Burkholderia_xenovorans_LB400 2 2
Ralstonia_eutropha_JMP134 3 3
Cupriavidus_taiwanensis_LMG_19424 1 1
Cupriavidus_necator_N-1 1 1
Ralstonia_eutropha_H16 2 2
Burkholderia_thailandensis_E264 3 3
Burkholderia_pseudomallei_1106a 1 1
Burkholderia_mallei_SAVP1 2 2
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_vietnamiensis_G4 3 3
Verminephrobacter_eiseniae_EF01-2 1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1
Collimonas_fungivorans_Ter331 1 1
Janthinobacterium_sp._Marseille 1 1
Herbaspirillum_seropedicae_SmR1 1 1
Achromobacter_xylosoxidans_A8 1 1
Nitrosospira_multiformis_ATCC_25196 2 2
Nitrosomonas_sp._Is79A3 1 1
Methylotenera_mobilis_JLW8 1 1
Methylobacillus_flagellatus_KT 1 1
Parvularcula_bermudensis_HTCC2503 1 1
Caulobacter_sp._K31 1 1
Caulobacter_crescentus_NA1000 1 1
Caulobacter_segnis_ATCC_21756 1 1
Phenylobacterium_zucineum_HLK1 1 1
Erythrobacter_litoralis_HTCC2594 2 2
Sphingopyxis_alaskensis_RB2256 1 1
Sphingomonas_wittichii_RW1 1 1
Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 1 1
Maricaulis_maris_MCS10 2 2
Hirschia_baltica_ATCC_49814 1 1
Hyphomonas_neptunium_ATCC_15444 3 3
Paracoccus_denitrificans_PD1222 1 1
Rhodospirillum_centenum_SW 1 1
Sinorhizobium_meliloti_AK83 1 1
Saccharophagus_degradans_2-40 4 4
Teredinibacter_turnerae_T7901 4 3
Cellvibrio_japonicus_Ueda107 6 5
Vibrio_sp._Ex25 1 1
Vibrio_harveyi_ATCC_BAA-1116 1 1
Vibrio_splendidus_LGP32 1 1
Psychromonas_ingrahamii_37 5 2
Idiomarina_loihiensis_L2TR 1 1
Ferrimonas_balearica_DSM_9799 1 1
Shewanella_piezotolerans_WP3 4 4
Shewanella_loihica_PV-4 4 2
Shewanella_oneidensis_MR-1 1 1
Shewanella_baltica_OS185 1 1
Shewanella_woodyi_ATCC_51908 2 2
Shewanella_sp._MR-4 1 1
Shewanella_frigidimarina_NCIMB_400 1 1
Colwellia_psychrerythraea_34H 5 5
Pseudoalteromonas_sp._SM9913 2 2
Pseudoalteromonas_atlantica_T6c 1 1
Pseudoalteromonas_haloplanktis_TAC125 3 3
Glaciecola_sp._4H-3-7+YE-5 1 1
Marinobacter_adhaerens_HP15 1 1
Alteromonas_sp._SN2 5 5
Alteromonas_macleodii_str._'Deep_ecotype' 1 1
Kangiella_koreensis_DSM_16069 1 1
Alcanivorax_borkumensis_SK2 1 1
Marinomonas_mediterranea_MMB-1 1 1
Chromohalobacter_salexigens_DSM_3043 1 1
Rhodanobacter_denitrificans 1 1
Pseudoxanthomonas_spadix_BD-a59 1 1
Pseudoxanthomonas_suwonensis_11-1 2 2
Stenotrophomonas_maltophilia_K279a 1 1
Xanthomonas_axonopodis_pv._citri_str._306 2 2
Xanthomonas_albilineans_GPE_PC73 2 2
Xanthomonas_oryzae_pv._oryzae_PXO99A 2 2
Xanthomonas_campestris_pv._campestris_str._B100 2 2
Nitrosococcus_halophilus_Nc4 2 2
Nitrosococcus_oceani_ATCC_19707 1 1
gamma_proteobacterium_HdN1 2 2
Edwardsiella_ictaluri_93-146 1 1
Serratia_sp._AS12 1 1
Serratia_plymuthica_AS9 1 1
Shigella_sonnei_Ss046 1 1
Shigella_flexneri_5_str._8401 2 2
Shigella_dysenteriae_Sd197 2 2
Shigella_boydii_CDC_3083-94 3 3
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1 1
Klebsiella_oxytoca_E718 1 1
Klebsiella_variicola_At-22 1 1
Klebsiella_pneumoniae_NTUH-K2044 1 1
Enterobacter_aerogenes_KCTC_2190 2 2
Escherichia_fergusonii_ATCC_35469 1 1
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 1 1
Enterobacter_cloacae_subsp._dissolvens_SDM 1 1
Citrobacter_rodentium_ICC168 1 1
Candidatus_Caldiarchaeum_subterraneum 4 3
Cenarchaeum_symbiosum_A 1 1
Nitrosopumilus_maritimus_SCM1 1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 1 1
Fervidicoccus_fontis_Kam940 1 1
Pyrolobus_fumarii_1A 7 3
Hyperthermus_butylicus_DSM_5456 1 1
Ignisphaera_aggregans_DSM_17230 2 2
Aeropyrum_pernix_K1 1 1
Ignicoccus_hospitalis_KIN4/I 3 1
Metallosphaera_cuprina_Ar-4 1 1
Metallosphaera_sedula_DSM_5348 1 1
Acidianus_hospitalis_W1 2 2
Sulfolobus_tokodaii_str._7 3 3
Sulfolobus_islandicus_Y.N.15.51 1 1
Sulfolobus_solfataricus_P2 1 1
Sulfolobus_acidocaldarius_DSM_639 3 3
Thermofilum_sp._1910b 6 6
Thermofilum_pendens_Hrk_5 6 5
Vulcanisaeta_moutnovskia_768-28 1 1
Vulcanisaeta_distributa_DSM_14429 1 1
Pyrobaculum_calidifontis_JCM_11548 1 1
halophilic_archaeon_DL31 2 2
Methanocella_arvoryzae_MRE50 30 28
Methanocella_conradii_HZ254 18 14
Methanocella_paludicola_SANAE 26 24
Methanosaeta_harundinacea_6Ac 3 2
Methanosaeta_thermophila_PT 1 1
Methanosaeta_concilii_GP6 1 1
Methanosalsum_zhilinae_DSM_4017 2 2
Methanohalobium_evestigatum_Z-7303 2 2
Methanococcoides_burtonii_DSM_6242 2 2
Methanosarcina_acetivorans_C2A 7 7
Methanosarcina_mazei_Go1 7 7
Methanosarcina_barkeri_str._Fusaro 8 7
Methanohalophilus_mahii_DSM_5219 2 2
Methanosphaerula_palustris_E1-9c 11 5
Methanoregula_boonei_6A8 3 1
Methanospirillum_hungatei_JF-1 1 1
Methanocorpusculum_labreanum_Z 4 2
Methanoplanus_petrolearius_DSM_11571 7 5
Methanoculleus_bourgensis_MS2 1 1
Methanoculleus_marisnigri_JR1 3 3
Ferroglobus_placidus_DSM_10642 1 1
Archaeoglobus_veneficus_SNP6 2 2
Archaeoglobus_fulgidus_DSM_4304 2 2
Thermococcus_sp._4557 2 2
Thermococcus_kodakarensis_KOD1 2 2
Thermococcus_gammatolerans_EJ3 4 4
Thermococcus_sibiricus_MM_739 1 1
Thermococcus_barophilus_MP 2 2
Pyrococcus_sp._ST04 2 2
Pyrococcus_yayanosii_CH1 3 3
Pyrococcus_horikoshii_OT3 2 2
Pyrococcus_abyssi_GE5 1 1
Pyrococcus_furiosus_COM1 1 1
Thermoplasmatales_archaeon_BRNA1 2 2
Thermoplasma_volcanium_GSS1 5 3
Thermoplasma_acidophilum_DSM_1728 6 3
Picrophilus_torridus_DSM_9790 1 1
Salinarchaeum_sp._Harcht-Bsk1 2 2
Halopiger_xanaduensis_SH-6 2 2
Haloterrigena_turkmenica_DSM_5511 4 2
Natrinema_sp._J7-2 2 1
Natrialba_magadii_ATCC_43099 5 5
Halorubrum_lacusprofundi_ATCC_49239 2 2
Haloquadratum_walsbyi_DSM_16790 1 1
Halogeometricum_borinquense_DSM_11551 3 3
Haloferax_mediterranei_ATCC_33500 1 1
Halomicrobium_mukohataei_DSM_12286 1 1
Halorhabdus_utahensis_DSM_12940 1 1
Natronomonas_pharaonis_DSM_2160 5 3
Haloarcula_hispanica_ATCC_33960 3 2
Halalkalicoccus_jeotgali_B3 3 3
Halobacterium_salinarum_R1 1 1
Halobacterium_sp._NRC-1 1 1
Methanotorris_igneus_Kol_5 2 2
Methanocaldococcus_fervens_AG86 1 1
Methanocaldococcus_vulcanius_M7 1 1
Methanothermus_fervidus_DSM_2088 1 1
Methanothermobacter_marburgensis_str._Marburg 8 5
Methanothermobacter_thermautotrophicus_str._Delta_H 2 2
Methanosphaera_stadtmanae_DSM_3091 24 6
Methanobrevibacter_sp._AbM4 2 2
Methanobrevibacter_ruminantium_M1 3 3
Methanobrevibacter_smithii_ATCC_35061 6 6
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 3 3
Aciduliprofundum_sp._MAR08-339 6 3
Aciduliprofundum_boonei_T469 4 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   25 24
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   32 14
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   6 3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   4 4
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   3 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2 2
Hordeum_vulgare_22   (Domesticated barley)   3 3
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5 5
Chamaesiphon_minutus_PCC_6605 1 1
Dactylococcopsis_salina_PCC_8305 1 1
Synechococcus_sp._JA-2-3B'a(2-13) 1 1
Synechococcus_sp._JA-3-3Ab 1 1
Prochlorococcus_marinus_str._MIT_9301 1 1
Oscillatoria_nigro-viridis_PCC_7112 2 2
Cyanothece_sp._PCC_7424 1 1
Cyanothece_sp._PCC_8801 1 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 8 8
Calothrix_parietina_Calothrix_sp._PCC_6303 3 3
Cylindrospermum_stagnale_PCC_7417 1 1
Anabaena_cylindrica_PCC_7122 1 1
Streptomyces_albus_J1074 5 4
Streptomyces_rapamycinicus_NRRL_5491 8 6
Streptomyces_davawensis_JCM_4913 7 6
Streptomyces_fulvissimus_DSM_40593 3 2
Streptomyces_venezuelae_ATCC_10712 3 3
Streptomyces_collinus_Tu_365 4 3
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 10 5
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 13 10
Saccharothrix_espanaensis_DSM_44229 1 1
Amycolatopsis_mediterranei_RB 4 2
Amycolatopsis_mediterranei_S699 4 2
Amycolatopsis_mediterranei_S699 4 2
Amycolatopsis_orientalis_HCCB10007 2 2
Actinoplanes_friuliensis_DSM_7358 6 3
Rhodococcus_pyridinivorans_SB3094 1 1
Rhodococcus_erythropolis_CCM2595 1 1
Nocardia_brasiliensis_ATCC_700358 4 3
Mycobacterium_sp._MOTT36Y 1 1
Mycobacterium_sp._JDM601 1 1
Mycobacterium_sp._KMS 1 1
Mycobacterium_sp._MCS 1 1
Mycobacterium_yongonense_05-1390 1 1
Mycobacterium_intracellulare_MOTT-64 1 1
Mycobacterium_indicus_pranii_MTCC_9506 1 1
Mycobacterium_intracellulare_MOTT-02 1 1
Mycobacterium_avium_subsp._paratuberculosis_MAP4 1 1
Mycobacterium_avium_subsp._paratuberculosis_K-10 1 1
Mycobacterium_canettii_CIPT_140070017 2 2
Mycobacterium_canettii_CIPT_140060008 1 1
Mycobacterium_canettii_CIPT_140070008 1 1
Mycobacterium_canettii_CIPT_140070010 2 2
Mycobacterium_tuberculosis_EAI5/NITR206 2 2
Mycobacterium_tuberculosis_EAI5 2 2
Mycobacterium_tuberculosis_CAS/NITR204 2 2
Mycobacterium_tuberculosis_str._Beijing/NITR203 2 2
Mycobacterium_tuberculosis_RGTB423 2 2
Mycobacterium_tuberculosis_RGTB327 2 2
Mycobacterium_tuberculosis_CTRI-2 2 2
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 1 1
Mycobacterium_tuberculosis_KZN_605 2 2
Mycobacterium_tuberculosis_KZN_4207 2 2
Mycobacterium_tuberculosis_CCDC5079 2 2
Mycobacterium_tuberculosis_CCDC5079 2 2
Mycobacterium_tuberculosis_H37Ra 2 2
Mycobacterium_tuberculosis_str._Haarlem/NITR202 2 2
Mycobacterium_tuberculosis_str._Haarlem 2 2
Mycobacterium_tuberculosis_F11 2 2
Mycobacterium_tuberculosis_H37Rv 2 2
Mycobacterium_tuberculosis_CDC1551 2 2
Mycobacterium_bovis_AF2122/97 1 1
Mycobacterium_bovis_BCG_str._Korea_1168P 1 1
Mycobacterium_bovis_BCG_str._Mexico 1 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1 1
Mycobacterium_gilvum_Spyr1 1 1
Mycobacterium_smegmatis_str._MC2_155 1 1
Mycobacterium_leprae_TN 1 1
Mycobacterium_kansasii_ATCC_12478 1 1
Clavibacter_michiganensis_subsp._sepedonicus 3 2
Bifidobacterium_longum_NCC2705 1 1
Bifidobacterium_longum_DJO10A 1 1
Bifidobacterium_longum_subsp._infantis_157F 1 1
Bifidobacterium_longum_subsp._longum_KACC_91563 1 1
Bifidobacterium_longum_subsp._longum_BBMN68 1 1
Bifidobacterium_longum_subsp._longum_JCM_1217 1 1
Chthonomonas_calidirosea_T49 9 5
Deinococcus_peraridilitoris_DSM_19664 2 2
Thermus_oshimai_JL-2 1 1
Thermus_thermophilus_HB8 2 2
Clostridium_thermocellum_DSM_1313 6 5
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 1 1
Clostridium_acidurici_9a 1 1
Desulfosporosinus_meridiei_DSM_13257 2 2
Desulfitobacterium_dichloroeliminans_LMG_P-21439 1 1
Desulfitobacterium_hafniense_DCB-2 2 2
Roseburia_intestinalis_XB6B4 1 1
Clostridium_saccharobutylicum_DSM_13864 1 1
Clostridium_autoethanogenum_DSM_10061 4 4
Clostridium_kluyveri_NBRC_12016 2 2
Clostridium_perfringens_SM101 1 1
Clostridium_perfringens_str._13 1 1
Clostridium_botulinum_H04402_065 1 1
Clostridium_botulinum_BKT015925 3 2
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_E3_str._Alaska_E43 3 3
Clostridium_botulinum_B1_str._Okra 1 1
Clostridium_botulinum_Ba4_str._657 1 1
Clostridium_botulinum_A2_str._Kyoto 1 1
Clostridium_botulinum_A3_str._Loch_Maree 1 1
Clostridium_botulinum_A_str._Hall 1 1
Clostridium_botulinum_A_str._ATCC_19397 1 1
Clostridium_acetobutylicum_DSM_1731 3 2
Clostridium_acetobutylicum_EA_2018 3 2
Halobacteroides_halobius_DSM_5150 1 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 1 1
Paenibacillus_sp._Y412MC10 3 2
Paenibacillus_mucilaginosus_KNP414 3 3
Paenibacillus_mucilaginosus_K02 5 5
Paenibacillus_polymyxa_CR1 3 2
Paenibacillus_polymyxa_SC2 5 3
Paenibacillus_polymyxa_E681 3 2
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 2 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 2 1
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 2 1
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 2 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 2 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 2 1
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 2 1
Bacillus_amyloliquefaciens_LFB112 2 1
Bacillus_amyloliquefaciens_CC178 2 1
Bacillus_amyloliquefaciens_Y2 2 1
Bacillus_amyloliquefaciens_IT-45 2 1
Bacillus_amyloliquefaciens_XH7 2 1
Bacillus_amyloliquefaciens_LL3 2 1
Bacillus_amyloliquefaciens_TA208 2 1
Bacillus_amyloliquefaciens_DSM_7 2 1
Bacillus_licheniformis_9945A 2 1
Bacillus_subtilis_PY79 3 2
Bacillus_subtilis_XF-1 3 2
Bacillus_subtilis_QB928 3 2
Bacillus_subtilis_BSn5 3 2
Bacillus_subtilis_subsp._subtilis_str._BAB-1 3 2
Bacillus_subtilis_subsp._subtilis_str._BSP1 3 2
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 3 2
Bacillus_subtilis_subsp._subtilis_6051-HGW 3 2
Bacillus_subtilis_subsp._spizizenii_TU-B-10 3 2
Bacillus_subtilis_subsp._spizizenii_str._W23 3 2
Bacillus_subtilis_subsp._natto_BEST195 3 2
Bacillus_licheniformis_DSM_13_=_ATCC_14580 2 1
Bacillus_infantis_NRRL_B-14911 2 1
Bacillus_thuringiensis_HD-771 1 1
Bacillus_thuringiensis_HD-789 1 1
Bacillus_thuringiensis_MC28 1 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 1 1
Bacillus_thuringiensis_YBT-1518 1 1
Bacillus_thuringiensis_Bt407 1 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1 1
Bacillus_cereus_FRI-35 1 1
Bacillus_cereus_B4264 1 1
Bacillus_cereus_G9842 1 1
Chlorobium_phaeobacteroides_BS1 3 3
Salinibacter_ruber_DSM_13855 26 25
Rhodothermus_marinus_SG0.5JP17-172 25 25
Echinicola_vietnamensis_DSM_17526 101 100
Emticicia_oligotrophica_DSM_17448 64 64
Prevotella_sp._oral_taxon_299_str._F0039 33 33
Prevotella_dentalis_DSM_3688 47 47
Porphyromonas_gingivalis_TDC60 15 15
Porphyromonas_gingivalis_W83 16 16
Alistipes_shahii_WAL_8301 40 40
Bacteroides_xylanisolvens_XB1A 114 114
Bacteroides_fragilis_638R 104 103
Bacteroides_fragilis_NCTC_9343 99 98
Nonlabens_dokdonensis_DSW-6 29 28
Psychroflexus_torquis_ATCC_700755 41 41
Riemerella_anatipestifer_RA-CH-2 9 9
Riemerella_anatipestifer_RA-CH-1 7 7
Riemerella_anatipestifer_RA-GD 9 9
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 9 9
Fibrobacter_succinogenes_subsp._succinogenes_S85 8 8
Singulisphaera_acidiphila_DSM_18658 30 16
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 2 2
Leptospira_interrogans_serovar_Lai_str._56601 3 3
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 3 3
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 3 3
Treponema_pedis_str._T_A4 2 2
Spirochaeta_thermophila_DSM_6578 1 1
Leptospirillum_ferriphilum_ML-04 1 1
Fusobacterium_nucleatum_subsp._vincentii_3_1_36A2 3 3
Fusobacterium_nucleatum_subsp._animalis_4_8 3 3
Bdellovibrio_exovorus_JSS 1 1
Lawsonia_intracellularis_N343 1 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1 1
Geobacter_sp._M18 8 4
Geobacter_sulfurreducens_PCA 3 2
Sorangium_cellulosum_So0157-2 13 13
Anaeromyxobacter_sp._K 10 9
Anaeromyxobacter_dehalogenans_2CP-C 5 4
Myxococcus_stipitatus_DSM_14675 38 22
Burkholderia_sp._CCGE1003 1 1
Burkholderia_sp._KJ006 3 3
Burkholderia_thailandensis_MSMB121 1 1
Burkholderia_pseudomallei_MSHR305 2 2
Burkholderia_pseudomallei_NCTC_13179 2 2
Burkholderia_pseudomallei_BPC006 1 1
Burkholderia_pseudomallei_1026b 2 2
Burkholderia_pseudomallei_668 2 2
Burkholderia_pseudomallei_1710b 1 1
Burkholderia_pseudomallei_K96243 2 2
Burkholderia_mallei_NCTC_10229 2 2
Burkholderia_mallei_NCTC_10247 2 2
Burkholderia_mallei_ATCC_23344 2 2
Burkholderia_ambifaria_MC40-6 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Variovorax_paradoxus_EPS 1 1
Zymomonas_mobilis_subsp._mobilis_ATCC_29191 1 1
Zymomonas_mobilis_subsp._mobilis_CP4 1 1
Zymomonas_mobilis_subsp._mobilis_ATCC_10988 1 1
Zymomonas_mobilis_subsp._mobilis_ZM4 1 1
Zymomonas_mobilis_subsp._pomaceae_ATCC_29192 1 1
Rhodobacter_sphaeroides_ATCC_17025 1 1
Sinorhizobium_fredii_USDA_257 1 1
Sinorhizobium_fredii_HH103 1 1
Sinorhizobium_meliloti_Rm41 1 1
Sinorhizobium_meliloti_SM11 1 1
Sinorhizobium_meliloti_BL225C 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 1 1
Vibrio_nigripulchritudo_VibrioScope 1 1
Idiomarina_loihiensis_GSL_199 1 1
Shewanella_sp._ANA-3 2 2
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS678 1 1
Shewanella_baltica_OS117 1 1
Shewanella_baltica_OS223 2 2
Shewanella_baltica_OS195 1 1
Shewanella_baltica_OS155 1 1
Shewanella_sp._MR-7 1 1
Glaciecola_psychrophila_170 5 5
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 4 3
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 4 3
Alteromonas_macleodii_str._'Ionian_Sea_U8' 2 2
Alteromonas_macleodii_str._'Ionian_Sea_U7' 2 2
Alteromonas_macleodii_str._'Ionian_Sea_U4' 2 2
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 2 2
Alteromonas_macleodii_str._'English_Channel_615' 2 2
Alteromonas_macleodii_AltDE1 4 3
Alteromonas_macleodii_str._'English_Channel_673' 3 3
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 3 3
Alteromonas_macleodii_str._'Black_Sea_11' 3 3
Alteromonas_macleodii_ATCC_27126 1 1
Thalassolituus_oleivorans_MIL-1 1 1
Stenotrophomonas_maltophilia_D457 2 2
Stenotrophomonas_maltophilia_JV3 1 1
Stenotrophomonas_maltophilia_R551-3 1 1
Xanthomonas_citri_subsp._citri_Aw12879 2 2
Xanthomonas_campestris_pv._vesicatoria_str._85-10 2 2
Xanthomonas_axonopodis_pv._citrumelo_F1 2 2
Xanthomonas_axonopodis_Xac29-1 2 2
Xanthomonas_oryzae_pv._oryzicola_BLS256 2 2
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 2 2
Xanthomonas_oryzae_pv._oryzae_KACC_10331 2 2
Xanthomonas_campestris_pv._raphani_756C 2 2
Xanthomonas_campestris_pv._campestris_str._8004 2 2
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 2 2
Thioalkalivibrio_nitratireducens_DSM_14787 2 2
Morganella_morganii_subsp._morganii_KT 1 1
Yersinia_pseudotuberculosis_IP_32953 1 1
Serratia_sp._AS13 1 1
Serratia_plymuthica_4Rx13 1 1
Serratia_liquefaciens_ATCC_27592 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1 1
Shigella_sonnei_53G 2 2
Shigella_flexneri_2002017 2 2
Shigella_flexneri_2a_str._2457T 1 1
Shigella_dysenteriae_1617 2 2
Shigella_boydii_Sb227 3 3
Salmonella_bongori_N268-08 1 1
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 1 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 2 2
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 2 2
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 2 2
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 2 2
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 3 3
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 2 2
Salmonella_enterica_serovar_Bovismorbificans_genomics 2 2
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1 1
Klebsiella_oxytoca_KCTC_1686 1 1
Klebsiella_pneumoniae_JM45 1 1
Klebsiella_pneumoniae_CG43 1 1
Klebsiella_pneumoniae_KCTC_2242 1 1
Klebsiella_pneumoniae_342 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_1084 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 1 1
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1 1
Enterobacter_aerogenes_EA1509E 1 1
Escherichia_coli_E24377A 2 2
Escherichia_coli_E._coli_PMV-1 4 4
Escherichia_coli_JJ1886 5 5
Escherichia_coli_LY180 2 2
Escherichia_coli_APEC_O78 4 4
Escherichia_coli_O7:K1_str._CE10 4 4
Escherichia_coli_O104:H4_str._2009EL-2050 4 4
Escherichia_coli_O104:H4_str._2009EL-2071 4 4
Escherichia_coli_O104:H4_str._2011C-3493 5 5
Escherichia_coli_NA114 2 2
Escherichia_coli_str._'clone_D_i2' 3 3
Escherichia_coli_str._'clone_D_i14' 3 3
Escherichia_coli_UM146 3 3
Escherichia_coli_042 5 5
Escherichia_coli_Xuzhou21 10 10
Escherichia_coli_IHE3034 5 5
Escherichia_coli_UMNK88 1 1
Escherichia_coli_O83:H1_str._NRG_857C 3 3
Escherichia_coli_ABU_83972 3 3
Escherichia_coli_KO11FL 2 2
Escherichia_coli_KO11FL 2 2
Escherichia_coli_LF82 3 3
Escherichia_coli_ED1a 8 8
Escherichia_coli_IAI39 6 6
Escherichia_coli_UMN026 4 4
Escherichia_coli_55989 5 5
Escherichia_coli_S88 5 5
Escherichia_coli_IAI1 3 3
Escherichia_coli_W 1 1
Escherichia_coli_W 1 1
Escherichia_coli_DH1 2 2
Escherichia_coli_DH1 2 2
Escherichia_coli_ATCC_8739 2 2
Escherichia_coli_BL21(DE3) 2 2
Escherichia_coli_BL21(DE3) 2 2
Escherichia_coli_SMS-3-5 2 2
Escherichia_coli_SE15 2 2
Escherichia_coli_SE11 5 5
Escherichia_coli_APEC_O1 6 6
Escherichia_coli_O103:H2_str._12009 11 11
Escherichia_coli_UTI89 4 4
Escherichia_coli_536 2 2
Escherichia_coli_HS 1 1
Escherichia_coli_ETEC_H10407 3 3
Escherichia_coli_O55:H7_str._RM12579 9 9
Escherichia_coli_O55:H7_str._CB9615 9 9
Escherichia_coli_O26:H11_str._11368 13 13
Escherichia_coli_CFT073 4 4
Escherichia_coli_O111:H-_str._11128 10 10
Escherichia_coli_O127:H6_str._E2348/69 5 5
Escherichia_coli_O157:H7_str._TW14359 13 13
Escherichia_coli_O157:H7_str._EC4115 10 10
Escherichia_coli_O157:H7_str._Sakai 10 10
Escherichia_coli_O157:H7_str._EDL933 10 10
Escherichia_coli_BW2952 2 2
Escherichia_coli_str._K-12_substr._MG1655 2 2
Escherichia_coli_str._K-12_substr._W3110 2 2
Escherichia_coli_str._K-12_substr._DH10B 2 2
Escherichia_coli_B_str._REL606 4 4
Acinetobacter_sp.__SH024 1 1
Acinetobacter_junii__SH205 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 5 2
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1 1
Caldisphaera_lagunensis_DSM_15908 1 1
Aeropyrum_camini_SY1_=_JCM_12091 1 1
Sulfolobus_islandicus_LAL14/1 3 3
Sulfolobus_islandicus_REY15A 2 2
Sulfolobus_islandicus_HVE10/4 2 2
Sulfolobus_islandicus_L.S.2.15 1 1
Sulfolobus_islandicus_M.16.27 1 1
Sulfolobus_islandicus_M.14.25 1 1
Sulfolobus_islandicus_M.16.4 1 1
Sulfolobus_islandicus_L.D.8.5 1 1
Sulfolobus_solfataricus_98/2 1 1
Sulfolobus_acidocaldarius_SUSAZ 3 3
Sulfolobus_acidocaldarius_Ron12/I 2 2
Sulfolobus_acidocaldarius_N8 2 2
Methanomethylovorans_hollandica_DSM_15978 6 6
Methanolobus_psychrophilus_R15 3 3
Methanosarcina_mazei_Tuc01 6 6
Methanoregula_formicica_Methanoregula_formicicum_SMSP 4 2
Archaeoglobus_sulfaticallidus_PM70-1 2 2
Thermococcus_sp._AM4 3 3
Thermococcus_sp._CL1 1 1
Thermococcus_litoralis_DSM_5473 3 3
Pyrococcus_sp._NA2 2 2
Pyrococcus_furiosus_DSM_3638 2 2
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 2 1
Ferroplasma_acidarmanus_fer1 2 2
Halovivax_ruber_XH-70 8 3
Natronococcus_occultus_SP4 8 7
Natronobacterium_gregoryi_SP2 3 3
Natronomonas_moolapensis_8.8.11 1 1
Haloarcula_hispanica_N601 2 1
Methanobacterium_sp._SWAN-1 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   18 16
Pan_troglodytes_69_2.1.4   (Chimpanzee)   13 11
Gorilla_gorilla_69_3.1   (Western gorilla)   12 12
Pongo_abelii_69_2   (Sumatran orangutan)   15 13
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   15 13
Macaca_mulatta_69_1   (Rhesus monkey)   12 12
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   14 12
Otolemur_garnettii_69_3   (Small-eared galago)   16 14
Microcebus_murinus_69_1   (Gray mouse lemur)   13 12
Rattus_norvegicus_69_3.4   (Norway rat)   14 12
Mus_musculus_69_38   (House mouse)   14 12
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   13 12
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   13 11
Cavia_porcellus_69_3   (Domestic guinea pig)   15 13
Oryctolagus_cuniculus_69_2   (Rabbit)   17 15
Ochotona_princeps_69   (American pika)   6 5
Tupaia_belangeri_69   (Northern tree shrew)   10 8
Sus_scrofa_69_10.2   (Pig)   14 12
Bos_taurus_69_3.1   (Cattle)   16 15
Vicugna_pacos_69_1   (Alpaca)   5 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   15 13
Mustela_putorius_furo_69_1.0   (Domestic ferret)   15 13
Ailuropoda_melanoleuca_69_1   (Giant panda)   15 13
Canis_familiaris_69_3.1   (Dog)   14 12
Felis_catus_69   (Domestic cat)   9 8
Equus_caballus_69_2   (Horse)   17 15
Myotis_lucifugus_69_2.0   (Little brown bat)   14 12
Pteropus_vampyrus_69_1   (Large flying fox)   14 12
Sorex_araneus_69_1   (European shrew)   10 8
Erinaceus_europaeus_69   (Western European hedgehog)   9 7
Procavia_capensis_69_1   (Cape rock hyrax)   14 12
Loxodonta_africana_69_3   (African savanna elephant)   15 13
Echinops_telfairi_69   (Small Madagascar hedgehog)   8 8
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   10 8
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   9 7
Macropus_eugenii_69_1.0   (Tammar wallaby)   11 10
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   12 11
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   16 14
Ornithorhynchus_anatinus_69_5   (Platypus)   14 12
Petromyzon_marinus_69_7.0   (Sea lamprey)   4 4
Meleagris_gallopavo_69_2   (Turkey)   15 14
Gallus_gallus_69_2   (Chicken)   14 12
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   14 12
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   12 10
Anolis_carolinensis_69_2.0   (Green anole)   13 13
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   13 12
Latimeria_chalumnae_69_1   (Coelacanth)   12 10
Gadus_morhua_69_1   (Atlantic cod)   17 15
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   16 14
Takifugu_rubripes_69_4   (Torafugu)   23 21
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   18 16
Oryzias_latipes_69_1   (Japanese medaka)   21 19
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   19 18
Oreochromis_niloticus_69_1.0   (Nile tilapia)   20 18
Danio_rerio_69_9   (Zebrafish)   22 18
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   5 5
Ciona_intestinalis_69   (Vase tunicate)   4 4
Drosophila_melanogaster_69_5   (Fruit fly)   6 3
Caenorhabditis_elegans_69_215   (Roundworm)   3 3
Arabidopsis_thaliana_10   (Thale cress)   1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   38 34
Homo_sapiens__(NCBI_version)   (Human)   27 23
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   14 12
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   4 3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   5 5
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3 2
Malus_x_domestica_(Duplicate)   (Apple)   3 3
Ricinus_communis__(Early_assembly)   (Castor bean)   3 3
Nicotiana_benthamiana_0.4.4_(Early_draft) 4 4
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2 2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2 2
Phoenix_dactylifera__(Early_draft)   (Date palm)   1 1
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 2 2
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1 1
NCBI_plasmid_sequences_(Plasmids) 94 84
Protozoadb_2010_08_(Protozoadb) 6 6
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 44 44
TargetDB__(Targets) 83 82
NCBI_viral_sequences_(Viral) 26 25
STRING_v9.0.5_(STRING) 3139 2904
PDB_chains_(SCOP_1.75)_(PDB) 3 3
UniProt__viral_sequences_(Viral) 19 19
Uniprot_2018_03_genome 129571 123095
Protein_Data_Bank_(all_PDB_sequenc) 31 31
NCBI_2017_08_genome 180739 174430

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]