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Domain combinations for Aromatic compound dioxygenase superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Aromatic compound dioxygenase domain in that genome.

Complete genomes
Genome     Number   Proteins
Adineta_vaga 19 18
Crassostrea_gigas_22   (Pacific oyster)   1 1
Sarcoptes_scabiei 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   18 16
Schistosoma_mansoni_ 1 1
Amphimedon_queenslandica 1 1
Sporisorium_reilianum_22 2 2
Ustilago_maydis_ 3 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 3 3
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3 3
Melampsora_laricis-populina_ 4 4
Rhodotorula_graminis_WP1_v1.0 2 2
Sporobolomyces_roseus_IAM_13481_ 3 3
Microbotryum_violaceum_22 2 2
Wallemia_sebi_v1.0 1 1
Sphaerobolus_stellatus_v1.0 7 7
Piloderma_croceum_F_1598_v1.0 7 7
Serpula_lacrymans_var._lacrymans_S7.9_ 1 1
Coniophora_puteana 4 4
Hydnomerulius_pinastri_v2.0 4 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 2 2
Pisolithus_microcarpus_441_v1.0 1 1
Pisolithus_tinctorius_Marx_270_v1.0 2 2
Scleroderma_citrinum_Foug_A_v1.0 2 2
Coprinopsis_cinerea_okayama7_130_v3 3 3
Pleurotus_ostreatus_   (Oyster mushroom)   3 3
Amanita_thiersii_Skay4041_v1.0 4 4
Amanita_muscaria_Koide_v1.0   (Fly agaric)   2 2
Galerina_marginata_v1.0 5 5
Hebeloma_cylindrosporum_h7_v2.0 2 2
Laccaria_bicolor_S238N-H82_ 2 2
Agaricus_bisporus_var._bisporus_ 6 6
Schizophyllum_commune_ 7 7
Stereum_hirsutum_FP-91666_SS1__v1.0 11 11
Heterobasidion_annosum_ 3 3
Gloeophyllum_trabeumv1.0 5 5
Punctularia_strigosozonata_v1.0 7 6
Sebacina_vermifera_MAFF_305830_v1.0 10 9
Fomitiporia_mediterranea_v1.0 9 9
Tulasnella_calospora_AL13/4D_v1.0 4 4
Postia_placenta_ 4 4
Wolfiporia_cocos_MD-104_SS10__v1.0 2 2
Fomitopsis_pinicolav1.0 2 2
Fomitopsis_pinicola_FP-58527_SS1_v3.0 2 2
Phanerochaete_chrysosporium_RP-78_2.1 4 4
Dichomitus_squalens 2 2
Trametes_versicolor_v1.0 3 3
Daldinia_eschscholzii_EC12_v1.0 7 7
Apiospora_montagnei_NRRL_25634_v1.0 8 8
Magnaporthe_poae_ATCC_64411_22 4 4
Magnaporthe_grisea_70-15_ 5 5
Podospora_anserina_ 4 4
Sporotrichum_thermophile_ATCC_42464_ 5 5
Thielavia_terrestris_NRRL_8126_ 6 6
Chaetomium_globosum_CBS_148.51_ 6 6
Neurospora_tetrasperma_ 4 4
Neurospora_discreta_FGSC_8579_ 3 3
Neurospora_crassa_OR74A_ 4 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   11 11
Verticillium_albo-atrum_VaMs.102_ 5 5
Verticillium_dahliae_VdLs.17_ 5 5
Acremonium_alcalophilumv_1.0 3 3
Glomerella_graminicola_22 8 8
Fusarium_graminearum_ 6 6
Nectria_haematococca_mpVI_ 12 12
Fusarium_oxysporum_f._sp._lycopersici_4286_ 8 8
Fusarium_verticillioides_7600_ 7 7
Trichoderma_asperellum_CBS_433.97_v1.0 5 5
Trichoderma_atroviride_ 3 3
Trichoderma_citrinoviride_v1.0 3 3
Trichoderma_reesei_1.2 4 4
Trichoderma_virens_Gv29-8_ 6 6
Trichoderma_longibrachiatum_ATCC_18648_v1.0 4 4
Trichoderma_harzianum_CBS_226.95_v1.0 7 6
Amorphotheca_resinae_v1.0   (Creosote fungus)   3 3
Botrytis_cinerea_B05.10_ 9 9
Sclerotinia_sclerotiorum_ 5 5
Didymella_exigua_CBS_183.55_v1.0 7 7
Leptosphaeria_maculans_22 3 3
Setosphaeria_turcica_v1.0 4 4
Cochliobolus_miyabeanus_ATCC_44560_v1.0 6 6
Cochliobolus_victoriae_FI3_v1.0 8 8
Cochliobolus_carbonum_26-R-13_v1.0 7 7
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   7 7
Alternaria_brassicicola_ 5 5
Cochliobolus_lunatus_m118_v2.0 6 6
Pyrenophora_teres_f._teres_22 4 4
Pyrenophora_tritici-repentis_ 4 4
Stagonospora_nodorum_ 6 6
Mycosphaerella_graminicola_IPO323_ 3 3
Zasmidium_cellare_ATCC_36951_v1.0 10 10
Dothistroma_septosporum 4 4
Septoria_musiva_v1.0 8 8
Mycosphaerella_fijiensis_CIRAD86_ 4 4
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 8 8
Paracoccidioides_brasiliensis_Pb18_ 3 3
Coccidioides_posadasii_RMSCC_3488_ 2 2
Coccidioides_immitis_RS_ 2 2
Ajellomyces_dermatitidis_SLH14081_ 3 3
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2 2
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_equinum_CBS_127.97_ 1 1
Trichophyton_verrucosum_HKI_0517_ 1 1
Arthroderma_benhamiae_CBS_112371_ 1 1
Trichophyton_tonsurans_CBS_112818_ 1 1
Trichophyton_rubrum_CBS_118892_ 1 1
Uncinocarpus_reesii_1704_ 2 2
Aspergillus_zonatus_v1.0 4 4
Penicillium_chrysogenum_Wisconsin_54-1255_ 7 7
Penicillium_chrysogenum_v1.0 7 7
Aspergillus_acidus_v1.0 14 14
Aspergillus_fumigatus_Af293 6 6
Aspergillus_brasiliensis_v1.0 15 15
Aspergillus_nidulans_FGSC_A4_ 12 12
Aspergillus_sydowii_v1.0 13 13
Aspergillus_versicolor_v1.0 11 11
Aspergillus_glaucus 11 11
Aspergillus_carbonarius_ITEM_5010_ 10 10
Neosartorya_fischeri_NRRL_181_ 7 7
Aspergillus_terreus_NIH2624_ 7 7
Aspergillus_tubingensis_v1.0 14 14
Aspergillus_wentii_v1.0 12 12
Aspergillus_oryzae_RIB40_ 12 12
Aspergillus_niger_22 13 13
Aspergillus_niger_ATCC_1015_ 13 13
Aspergillus_flavus_NRRL3357_ 13 13
Aspergillus_clavatus_NRRL_1_ 2 2
Penicillium_marneffei_ATCC_18224_ 4 4
Tuber_melanosporum_Mel28_22 2 2
Tuber_melanosporum_Vittad_   (Perigord truffle)   2 2
Candida_dubliniensis_CD36_ 2 2
Candida_tropicalis_MYA-3404_ 2 2
Candida_parapsilosis_ 1 1
Candida_albicans_SC5314 3 3
Lodderomyces_elongisporus_NRRL_YB-4239_ 1 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3 3
Pichia_stipitis_CBS_6054_ 2 2
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1 1
Debaromyces_hansenii 3 3
Wickerhamomyces_anomalus 1 1
Catenaria_anguillulae_PL171_v1.0 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Aureococcus_anophagefferens_ 1 1
Pythium_iwayamai_DAOM_BR242034_22 9 8
Pythium_arrhenomanes_ATCC_12531_22 1 1
Pythium_ultimum_v1.7-2 9 9
Pythium_aphanidermatum_DAOM_BR444_22 7 7
Pythium_irregulare_DAOM_BR486_22 7 7
Pythium_vexans_DAOM_BR484_22 1 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   15 15
Phytophthora_sojae_1.1 14 14
Phytophthora_infestans_T30-4_ 5 5
Phytophthora_capsici_ 5 5
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Fragilariopsis_cylindrus 6 6
Thalassiosira_pseudonana_CCMP1335 1 1
Naegleria_gruberi_ 1 1
Thermobaculum_terrenum_ATCC_BAA-798 1 1
Acaryochloris_marina_MBIC11017 1 1
Gloeobacter_violaceus_PCC_7421 1 1
Nostoc_sp._PCC_7107 1 1
Conexibacter_woesei_DSM_14684 1 1
Rubrobacter_xylanophilus_DSM_9941 3 3
Thermobispora_bispora_DSM_43833 2 2
Nakamurella_multipartita_DSM_44233 1 1
Modestobacter_marinus 2 2
Blastococcus_saxobsidens_DD2 4 4
Geodermatophilus_obscurus_DSM_43160 4 4
Kineococcus_radiotolerans_SRS30216 1 1
Catenulispora_acidiphila_DSM_44928 3 3
Stackebrandtia_nassauensis_DSM_44728 3 3
Frankia_symbiont_of_Datisca_glomerata 2 2
Frankia_sp._EAN1pec 2 2
Thermomonospora_curvata_DSM_43183 2 2
Streptosporangium_roseum_DSM_43021 3 3
Kitasatospora_setae_KM-6054 2 2
Streptomyces_coelicolor_A3(2) 3 3
Streptomyces_sp._PAMC26508 2 2
Streptomyces_flavogriseus_ATCC_33331 1 1
Streptomyces_sp._SirexAA-E 1 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_bingchenggensis_BCW-1 6 6
Streptomyces_violaceusniger_Tu_4113 4 4
Streptomyces_avermitilis_MA-4680 7 7
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_scabiei_87.22 8 8
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 4 4
Actinosynnema_mirum_DSM_43827 4 4
Saccharomonospora_viridis_DSM_43017 3 3
Pseudonocardia_dioxanivorans_CB1190 10 10
Saccharopolyspora_erythraea_NRRL_2338 5 5
Amycolatopsis_mediterranei_U32 6 6
Kribbella_flavida_DSM_17836 1 1
Nocardioides_sp._JS614 2 2
Microlunatus_phosphovorus_NM-1 1 1
Verrucosispora_maris_AB-18-032 2 2
Actinoplanes_sp._N902-109 3 3
Actinoplanes_sp._SE50/110 5 5
Actinoplanes_missouriensis_431 7 7
Tsukamurella_paurometabola_DSM_20162 2 2
Gordonia_sp._KTR9 3 3
Gordonia_polyisoprenivorans_VH2 3 3
Gordonia_bronchialis_DSM_43247 1 1
Rhodococcus_jostii_RHA1 13 12
Rhodococcus_equi_103S 6 5
Rhodococcus_opacus_B4 9 8
Rhodococcus_erythropolis_PR4 5 4
Nocardia_cyriacigeorgica_GUH-2 1 1
Nocardia_farcinica_IFM_10152 2 2
Amycolicicoccus_subflavus_DQS3-9A1 1 1
Mycobacterium_sp._JLS 4 4
Mycobacterium_intracellulare_ATCC_13950 2 2
Mycobacterium_avium_104 2 2
Mycobacterium_vanbaalenii_PYR-1 4 4
Mycobacterium_rhodesiae_NBB3 5 5
Mycobacterium_gilvum_PYR-GCK 4 4
Mycobacterium_chubuense_NBB4 1 1
Mycobacterium_smegmatis_str._MC2_155 5 5
Corynebacterium_efficiens_YS-314 3 3
Corynebacterium_urealyticum_DSM_7109 1 1
Corynebacterium_variabile_DSM_44702 2 2
Corynebacterium_glutamicum_R 6 6
Sanguibacter_keddieii_DSM_10542 1 1
Beutenbergia_cavernae_DSM_12333 1 1
Microbacterium_testaceum_StLB037 3 3
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 1 1
Arthrobacter_phenanthrenivorans_Sphe3 3 3
Arthrobacter_chlorophenolicus_A6 5 5
Arthrobacter_aurescens_TC1 3 3
Arthrobacter_arilaitensis_Re117 3 3
Kocuria_rhizophila_DC2201 2 2
Arthrobacter_sp._Rue61a 3 3
Arthrobacter_sp._FB24 4 4
Micrococcus_luteus_NCTC_2665 1 1
Bifidobacterium_dentium_Bd1 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1 1
Sphaerobacter_thermophilus_DSM_20745 2 2
Herpetosiphon_aurantiacus_DSM_785 2 2
Roseiflexus_sp._RS-1 1 1
Roseiflexus_castenholzii_DSM_13941 1 1
Chloroflexus_sp._Y-400-fl 1 1
Chloroflexus_aggregans_DSM_9485 1 1
Chloroflexus_aurantiacus_J-10-fl 1 1
Deinococcus_gobiensis_I-0 1 1
Deinococcus_deserti_VCD115 4 4
Deinococcus_geothermalis_DSM_11300 3 3
Meiothermus_ruber_DSM_1279 3 3
Thermus_sp._CCB_US3_UF1 1 1
Thermus_scotoductus_SA-01 1 1
Thermus_thermophilus_HB27 1 1
Clostridium_saccharolyticum_WM1 1 1
Gemmatimonas_aurantiaca_T-27 1 1
Haliscomenobacter_hydrossis_DSM_1100 4 4
Niastella_koreensis_GR20-10 1 1
Chitinophaga_pinensis_DSM_2588 1 1
Fibrella_aestuarina 2 2
Leadbetterella_byssophila_DSM_17132 1 1
Dyadobacter_fermentans_DSM_18053 1 1
Spirosoma_linguale_DSM_74 4 4
Runella_slithyformis_DSM_19594 4 4
Solitalea_canadensis_DSM_3403 1 1
Owenweeksia_hongkongensis_DSM_17368 1 1
Gramella_forsetii_KT0803 1 1
Robiginitalea_biformata_HTCC2501 1 1
Aequorivita_sublithincola_DSM_14238 1 1
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 1 1
Flavobacterium_johnsoniae_UW101 1 1
Isosphaera_pallida_ATCC_43644 1 1
Planctomyces_brasiliensis_DSM_5305 1 1
Planctomyces_limnophilus_DSM_3776 1 1
Rhodopirellula_baltica_SH_1 1 1
Pirellula_staleyi_DSM_6068 1 1
Opitutus_terrae_PB90-1 1 1
Candidatus_Solibacter_usitatus_Ellin6076 2 2
Granulicella_tundricola_MP5ACTX9 1 1
Candidatus_Koribacter_versatilis_Ellin345 1 1
Terriglobus_saanensis_SP1PR4 1 1
Desulfovibrio_alaskensis_G20 1 1
Desulfovibrio_africanus_str._Walvis_Bay 1 1
Geobacter_sp._M21 1 1
Haliangium_ochraceum_DSM_14365 2 2
Sorangium_cellulosum_'So_ce_56' 3 3
Stigmatella_aurantiaca_DW4/3-1 3 3
Corallococcus_coralloides_DSM_2259 3 3
Myxococcus_fulvus_HW-1 1 1
Thauera_sp._MZ1T 1 1
Azoarcus_sp._KH32C 1 1
Pseudogulbenkiania_sp._NH8B 4 4
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1 1
Leptothrix_cholodnii_SP-6 2 2
Burkholderia_rhizoxinica_HKI_454 1 1
Burkholderia_phytofirmans_PsJN 5 5
Burkholderia_phymatum_STM815 4 4
Burkholderia_xenovorans_LB400 4 4
Ralstonia_eutropha_JMP134 10 10
Cupriavidus_taiwanensis_LMG_19424 4 4
Cupriavidus_metallidurans_CH34 8 8
Cupriavidus_necator_N-1 12 12
Ralstonia_eutropha_H16 8 8
Ralstonia_pickettii_12D 3 3
Ralstonia_solanacearum_CFBP2957 3 3
Burkholderia_sp._RPE64 5 5
Burkholderia_sp._CCGE1002 4 4
Burkholderia_thailandensis_E264 3 3
Burkholderia_pseudomallei_1106a 3 3
Burkholderia_mallei_SAVP1 3 3
Burkholderia_ambifaria_AMMD 6 6
Burkholderia_cenocepacia_HI2424 4 4
Burkholderia_multivorans_ATCC_17616 5 5
Burkholderia_vietnamiensis_G4 4 4
Burkholderia_gladioli_BSR3 5 5
Burkholderia_glumae_BGR1 3 3
Verminephrobacter_eiseniae_EF01-2 1 1
Ramlibacter_tataouinensis_TTB310 1 1
Delftia_sp._Cs1-4 1 1
Delftia_acidovorans_SPH-1 3 3
Polaromonas_sp._JS666 6 6
Polaromonas_naphthalenivorans_CJ2 2 2
Variovorax_paradoxus_S110 7 7
Acidovorax_ebreus_TPSY 1 1
Acidovorax_sp._KKS102 1 1
Acidovorax_sp._JS42 1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1
Comamonas_testosteroni_CNB-2 2 2
Collimonas_fungivorans_Ter331 2 2
Herbaspirillum_seropedicae_SmR1 5 5
Advenella_kashmirensis_WT001 1 1
Bordetella_petrii_DSM_12804 5 5
Achromobacter_xylosoxidans_A8 4 4
Thiobacillus_denitrificans_ATCC_25259 1 1
Nitrosospira_multiformis_ATCC_25196 1 1
Nitrosomonas_sp._Is79A3 1 1
Methylovorus_sp._MP688 1 1
Methylovorus_glucosetrophus_SIP3-4 1 1
Asticcacaulis_excentricus_CB_48 1 1
Caulobacter_sp._K31 2 2
Caulobacter_crescentus_NA1000 2 2
Caulobacter_segnis_ATCC_21756 3 3
Novosphingobium_aromaticivorans_DSM_12444 2 2
Sphingobium_sp._SYK-6 1 1
Sphingobium_japonicum_UT26S 3 3
Sphingobium_chlorophenolicum_L-1 2 2
Sphingomonas_sp._MM-1 1 1
Sphingomonas_wittichii_RW1 7 7
Dinoroseobacter_shibae_DFL_12 4 4
Phaeobacter_gallaeciensis_2.10 2 2
Pseudovibrio_sp._FO-BEG1 2 2
Jannaschia_sp._CCS1 2 2
Ruegeria_sp._TM1040 2 2
Ruegeria_pomeroyi_DSS-3 2 2
Ketogulonicigenium_vulgare_Y25 3 3
Ketogulonigenium_vulgarum_WSH-001 3 3
Roseobacter_litoralis_Och_149 3 3
Roseobacter_denitrificans_OCh_114 2 2
Paracoccus_denitrificans_PD1222 4 4
Tistrella_mobilis_KA081020-065 3 3
Azospirillum_lipoferum_4B 4 4
Azospirillum_sp._B510 4 4
Acidiphilium_multivorum_AIU301 2 2
Acidiphilium_cryptum_JF-5 2 2
Polymorphum_gilvum_SL003B-26A1 5 5
Candidatus_Midichloria_mitochondrii_IricVA 1 1
Wolbachia_endosymbiont_of_Culex_quinquefasciatus_Pel 1 1
Wolbachia_sp._wRi 1 1
Ehrlichia_chaffeensis_str._Arkansas 1 1
Ehrlichia_canis_str._Jake 1 1
Ehrlichia_ruminantium_str._Gardel 1 1
Anaplasma_phagocytophilum_HZ 1 1
Anaplasma_marginale_str._Florida 1 1
Anaplasma_centrale_str._Israel 1 1
Orientia_tsutsugamushi_str._Boryong 1 1
Rickettsia_bellii_OSU_85-389 1 1
Rickettsia_canadensis_str._McKiel 1 1
Rickettsia_typhi_str._Wilmington 1 1
Rickettsia_prowazekii_str._BuV67-CWPP 1 1
Rickettsia_philipii_str._364D 1 1
Rickettsia_heilongjiangensis_054 1 1
Rickettsia_peacockii_str._Rustic 1 1
Rickettsia_felis_URRWXCal2 1 1
Rickettsia_slovaca_13-B 1 1
Rickettsia_parkeri_str._Portsmouth 1 1
Rickettsia_massiliae_MTU5 1 1
Rickettsia_japonica_YH 1 1
Rickettsia_africae_ESF-5 1 1
Rickettsia_rhipicephali_str._3-7-female6-CWPP 1 1
Rickettsia_montanensis_str._OSU_85-930 1 1
Candidatus_Rickettsia_amblyommii_str._GAT-30V 1 1
Rickettsia_australis_str._Cutlack 1 1
Rickettsia_akari_str._Hartford 1 1
Rickettsia_rickettsii_str._'Sheila_Smith' 1 1
Rickettsia_conorii_str._Malish_7 1 1
Xanthobacter_autotrophicus_Py2 5 5
Azorhizobium_caulinodans_ORS_571 3 3
Methylobacterium_chloromethanicum_CM4 1 1
Methylobacterium_sp._4-46 3 3
Methylobacterium_nodulans_ORS_2060 6 6
Ochrobactrum_anthropi_ATCC_49188 2 2
Brucella_microti_CCM_4915 1 1
Brucella_pinnipedialis_B2/94 2 2
Brucella_canis_ATCC_23365 1 1
Brucella_melitensis_ATCC_23457 1 1
Brucella_ovis_ATCC_25840 1 1
Brucella_abortus_S19 2 2
Sinorhizobium_fredii_NGR234 4 4
Sinorhizobium_medicae_WSM419 3 3
Sinorhizobium_meliloti_AK83 2 2
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 3 3
Rhizobium_etli_CIAT_652 3 3
Rhizobium_leguminosarum_bv._viciae_3841 6 6
Agrobacterium_tumefaciens_str._C58 3 3
Agrobacterium_radiobacter_K84 4 4
Agrobacterium_sp._H13-3 4 4
Agrobacterium_vitis_S4 3 3
Mesorhizobium_sp._BNC1 3 3
Mesorhizobium_opportunistum_WSM2075 2 2
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 5 5
Mesorhizobium_loti_MAFF303099 2 2
Pelagibacterium_halotolerans_B2 5 5
Hyphomicrobium_sp._MC1 2 2
Hyphomicrobium_denitrificans_ATCC_51888 1 1
Bradyrhizobium_japonicum_USDA_110 8 8
Bradyrhizobium_sp._ORS_278 5 5
Methylocystis_sp._SC2 1 1
Cellvibrio_japonicus_Ueda107 1 1
Oceanimonas_sp._GK1 3 3
Vibrio_sp._Ex25 1 1
Vibrio_harveyi_ATCC_BAA-1116 1 1
Vibrio_parahaemolyticus_RIMD_2210633 1 1
Glaciecola_sp._4H-3-7+YE-5 1 1
Marinobacter_sp._BSs20148 2 2
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1 1
Hahella_chejuensis_KCTC_2396 1 1
Marinomonas_posidonica_IVIA-Po-181 1 1
Marinomonas_sp._MWYL1 1 1
Marinomonas_mediterranea_MMB-1 3 3
Chromohalobacter_salexigens_DSM_3043 2 2
Halomonas_elongata_DSM_2581 2 2
Xanthomonas_axonopodis_pv._citri_str._306 2 2
Xanthomonas_albilineans_GPE_PC73 2 2
Xanthomonas_oryzae_pv._oryzae_PXO99A 2 2
Xanthomonas_campestris_pv._campestris_str._B100 2 2
Nitrosococcus_halophilus_Nc4 1 1
Nitrosococcus_oceani_ATCC_19707 2 2
Photorhabdus_asymbiotica 1 1
Photorhabdus_luminescens_subsp._laumondii_TTO1 1 1
Xenorhabdus_bovienii_SS-2004 1 1
Xenorhabdus_nematophila_ATCC_19061 1 1
Yersinia_pseudotuberculosis_IP_31758 1 1
Yersinia_pestis_Pestoides_F 1 1
Serratia_sp._AS12 2 2
Serratia_plymuthica_AS9 2 2
Serratia_proteamaculans_568 2 2
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1 1
Pantoea_ananatis_LMG_20103 2 2
Escherichia_blattae_DSM_4481 2 2
Enterobacteriaceae_bacterium_strain_FGI_57 4 4
Klebsiella_oxytoca_E718 2 2
Klebsiella_variicola_At-22 3 3
Klebsiella_pneumoniae_NTUH-K2044 3 3
Enterobacter_aerogenes_KCTC_2190 3 3
Escherichia_fergusonii_ATCC_35469 3 3
Enterobacter_asburiae_LF7a 1 1
Citrobacter_rodentium_ICC168 2 2
Azotobacter_vinelandii_DJ 2 2
Pseudomonas_sp._TKP 4 4
Pseudomonas_sp._UW4 4 4
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 5 5
Pseudomonas_entomophila_L48 3 3
Pseudomonas_syringae_pv._tomato_str._DC3000 2 2
Pseudomonas_stutzeri_A1501 3 3
Pseudomonas_fulva_12-X 3 3
Pseudomonas_putida_F1 4 4
Pseudomonas_protegens_Pf-5 5 5
Pseudomonas_fluorescens_SBW25 3 3
Pseudomonas_mendocina_ymp 1 1
Pseudomonas_aeruginosa_UCBPP-PA14 3 3
Pseudomonas_sp._VLB120 3 3
Psychrobacter_sp._G 1 1
Psychrobacter_cryohalolentis_K5 1 1
Acinetobacter_oleivorans_DR1 3 3
Acinetobacter_calcoaceticus_PHEA-2 3 3
Acinetobacter_baumannii_ATCC_17978 3 3
Acinetobacter_sp._ADP1 3 3
Methanocella_arvoryzae_MRE50 1 1
Haloferax_volcanii_DS2 1 1
Methanothermobacter_marburgensis_str._Marburg 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   1 1
Cryptococcus_neoformans_var._grubii_H99_ 1 1
Cryptococcus_neoformans_B-3501A_ 1 1
Cryptococcus_neoformans_JEC21_ 1 1
Paracoccidioides_brasiliensis_Pb01_ 3 3
Paracoccidioides_brasiliensis_Pb03_ 3 3
Coccidioides_posadasii_str._Silveira_ 2 2
Coccidioides_immitis_RMSCC_3703_ 2 2
Coccidioides_immitis_RMSCC_2394_ 2 2
Coccidioides_immitis_H538.4_ 2 2
Ajellomyces_dermatitidis_ER-3_ 3 3
Histoplasma_capsulatum_H143 3 3
Histoplasma_capsulatum_H88 3 3
Histoplasma_capsulatum_G186AR 3 3
Aspergillus_fumigatus_A1163_ 6 6
Candida_albicans_WO-1_ 2 2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1 1
Oscillatoria_nigro-viridis_PCC_7112 2 2
Cyanothece_sp._PCC_7822 1 1
Cyanothece_sp._PCC_7424 1 1
Anabaena_cylindrica_PCC_7122 1 1
Frankia_sp._EuI1c 3 3
Frankia_sp._CcI3 1 1
Nocardiopsis_alba_ATCC_BAA-2165 1 1
Streptomyces_albus_J1074 1 1
Streptomyces_rapamycinicus_NRRL_5491 6 6
Streptomyces_davawensis_JCM_4913 5 5
Streptomyces_fulvissimus_DSM_40593 1 1
Streptomyces_venezuelae_ATCC_10712 1 1
Streptomyces_collinus_Tu_365 5 5
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 4 4
Saccharothrix_espanaensis_DSM_44229 6 6
Amycolatopsis_mediterranei_RB 6 6
Amycolatopsis_mediterranei_S699 6 6
Amycolatopsis_mediterranei_S699 6 6
Amycolatopsis_orientalis_HCCB10007 5 5
Actinoplanes_friuliensis_DSM_7358 4 4
Rhodococcus_pyridinivorans_SB3094 3 3
Rhodococcus_erythropolis_CCM2595 5 4
Nocardia_brasiliensis_ATCC_700358 3 3
Mycobacterium_sp._MOTT36Y 2 2
Mycobacterium_sp._JDM601 2 2
Mycobacterium_sp._KMS 7 7
Mycobacterium_sp._MCS 4 4
Mycobacterium_yongonense_05-1390 2 2
Mycobacterium_intracellulare_MOTT-64 2 2
Mycobacterium_indicus_pranii_MTCC_9506 2 2
Mycobacterium_intracellulare_MOTT-02 2 2
Mycobacterium_avium_subsp._paratuberculosis_MAP4 2 2
Mycobacterium_avium_subsp._paratuberculosis_K-10 2 2
Mycobacterium_gilvum_Spyr1 4 4
Mycobacterium_smegmatis_str._MC2_155 5 5
Mycobacterium_kansasii_ATCC_12478 4 4
Corynebacterium_maris_DSM_45190 4 4
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 5 5
Corynebacterium_terpenotabidum_Y-11 1 1
Corynebacterium_callunae_DSM_20147 3 3
Corynebacterium_glutamicum_MB001 6 6
Corynebacterium_glutamicum_SCgG2 6 6
Corynebacterium_glutamicum_SCgG1 6 6
Corynebacterium_glutamicum_ATCC_13032 6 6
Corynebacterium_glutamicum_ATCC_13032 6 6
Corynebacterium_glutamicum_ATCC_13032 6 6
Thermus_oshimai_JL-2 1 1
Thermus_thermophilus_JL-18 1 1
Thermus_thermophilus_SG0.5JP17-16 1 1
Thermus_thermophilus_HB8 1 1
Paenibacillus_sp._Y412MC10 1 1
Echinicola_vietnamensis_DSM_17526 1 1
Emticicia_oligotrophica_DSM_17448 3 3
Riemerella_anatipestifer_RA-CH-2 1 1
Riemerella_anatipestifer_RA-CH-1 1 1
Riemerella_anatipestifer_RA-GD 1 1
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 1 1
Singulisphaera_acidiphila_DSM_18658 5 5
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Desulfocapsa_sulfexigens_DSM_10523 1 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1 1
Geobacter_sp._M18 1 1
Sorangium_cellulosum_So0157-2 3 3
Myxococcus_stipitatus_DSM_14675 2 2
Burkholderia_phenoliruptrix_BR3459a 6 6
Pandoraea_pnomenusa_3kgm 3 3
Ralstonia_pickettii_12J 3 3
Ralstonia_solanacearum_FQY_4 2 2
Ralstonia_solanacearum_Po82 3 3
Ralstonia_solanacearum_PSI07 4 4
Ralstonia_solanacearum_CMR15 2 2
Ralstonia_solanacearum_GMI1000 2 2
Burkholderia_sp._YI23 9 9
Burkholderia_sp._CCGE1003 4 4
Burkholderia_sp._CCGE1001 5 5
Burkholderia_sp._KJ006 4 4
Burkholderia_thailandensis_MSMB121 3 3
Burkholderia_pseudomallei_MSHR305 3 3
Burkholderia_pseudomallei_NCTC_13179 3 3
Burkholderia_pseudomallei_BPC006 3 3
Burkholderia_pseudomallei_1026b 3 3
Burkholderia_pseudomallei_MSHR346 1 1
Burkholderia_pseudomallei_668 3 3
Burkholderia_pseudomallei_1710b 3 3
Burkholderia_pseudomallei_K96243 3 3
Burkholderia_mallei_NCTC_10229 3 3
Burkholderia_mallei_NCTC_10247 3 3
Burkholderia_mallei_ATCC_23344 3 3
Burkholderia_lata 5 5
Burkholderia_ambifaria_MC40-6 5 5
Burkholderia_cenocepacia_MC0-3 5 5
Burkholderia_cenocepacia_AU_1054 4 4
Burkholderia_cenocepacia_J2315 5 5
Burkholderia_multivorans_ATCC_17616 5 5
Burkholderia_cepacia_GG4 4 4
Alicycliphilus_denitrificans_BC 1 1
Variovorax_paradoxus_B4 7 7
Variovorax_paradoxus_EPS 4 4
Nitrosomonas_sp._AL212 1 1
Caulobacter_crescentus_CB15 2 2
Phaeobacter_gallaeciensis_DSM_17395 2 2
Phaeobacter_gallaeciensis_DSM_26640 4 4
Leisingera_methylohalidivorans_DSM_14336 2 2
Octadecabacter_antarcticus_307 1 1
Wolbachia_endosymbiont_of_Drosophila_melanogaster 1 1
Wolbachia_endosymbiont_of_Onchocerca_ochengi_str._Adamawa_Cameroon 1 1
Wolbachia_endosymbiont_strain_TRS_of_Brugia_malayi 1 1
Wolbachia_endosymbiont_of_Drosophila_simulans_wHa 1 1
Wolbachia_endosymbiont_of_Drosophila_simulans_wNo 1 1
Ehrlichia_muris_AS145 1 1
Ehrlichia_ruminantium_str._Welgevonden 1 1
Ehrlichia_ruminantium_str._Welgevonden 1 1
Anaplasma_phagocytophilum_str._Dog2 1 1
Anaplasma_phagocytophilum_str._HZ2 1 1
Anaplasma_phagocytophilum_str._JM 1 1
Anaplasma_marginale_str._Dawn 1 1
Anaplasma_marginale_str._Gypsy_Plains 1 1
Anaplasma_marginale_str._St._Maries 1 1
Orientia_tsutsugamushi_str._Ikeda 1 1
Rickettsia_bellii_RML369-C 1 1
Rickettsia_canadensis_str._CA410 1 1
Rickettsia_typhi_str._B9991CWPP 1 1
Rickettsia_typhi_str._TH1527 1 1
Rickettsia_prowazekii_str._Breinl 1 1
Rickettsia_prowazekii_str._NMRC_Madrid_E 1 1
Rickettsia_prowazekii_str._RpGvF24 1 1
Rickettsia_prowazekii_str._GvV257 1 1
Rickettsia_prowazekii_str._Dachau 1 1
Rickettsia_prowazekii_str._Katsinyian 1 1
Rickettsia_prowazekii_str._Chernikova 1 1
Rickettsia_prowazekii_Rp22 1 1
Rickettsia_prowazekii_str._Madrid_E 1 1
Rickettsia_slovaca_str._D-CWPP 1 1
Rickettsia_massiliae_str._AZT80 1 1
Rickettsia_rickettsii_str._Arizona 1 1
Rickettsia_rickettsii_str._Brazil 1 1
Rickettsia_rickettsii_str._Hauke 1 1
Rickettsia_rickettsii_str._Colombia 1 1
Rickettsia_rickettsii__str._Hlp#2 1 1
Rickettsia_rickettsii_str._Hino 1 1
Rickettsia_rickettsii_str._Iowa 1 1
Brucella_ceti_TE10759-12 2 2
Brucella_ceti_TE28753-12 1 1
Brucella_canis_HSK_A52141 1 1
Brucella_suis_VBI22 2 2
Brucella_suis_1330 2 2
Brucella_suis_1330 2 2
Brucella_melitensis_NI 2 2
Brucella_melitensis_M5-90 2 2
Brucella_melitensis_M28 2 2
Brucella_melitensis_bv._1_str._16M 2 2
Brucella_abortus_A13334 2 2
Brucella_melitensis_biovar_Abortus_2308 2 2
Brucella_abortus_bv._1_str._9-941 2 2
Sinorhizobium_fredii_USDA_257 4 4
Sinorhizobium_fredii_HH103 4 4
Sinorhizobium_meliloti_2011 3 3
Sinorhizobium_meliloti_GR4 4 4
Sinorhizobium_meliloti_Rm41 5 5
Sinorhizobium_meliloti_SM11 3 3
Sinorhizobium_meliloti_BL225C 3 3
Sinorhizobium_meliloti_1021 3 3
Rhizobium_etli_CFN_42 4 4
Rhizobium_etli_bv._mimosae_str._Mim1 3 3
Rhizobium_tropici_CIAT_899 3 3
Rhizobium_leguminosarum_bv._trifolii_WSM2304 5 5
Rhizobium_leguminosarum_bv._trifolii_WSM1325 5 5
Hyphomicrobium_denitrificans_1NES1 1 1
Rhodopseudomonas_palustris_DX-1 1 1
Rhodopseudomonas_palustris_TIE-1 1 1
Rhodopseudomonas_palustris_HaA2 2 2
Rhodopseudomonas_palustris_BisB5 1 1
Rhodopseudomonas_palustris_BisB18 1 1
Rhodopseudomonas_palustris_CGA009 1 1
Bradyrhizobium_sp._S23321 7 7
Bradyrhizobium_sp._BTAi1 3 3
Bradyrhizobium_oligotrophicum_S58 4 4
Bradyrhizobium_japonicum_USDA_6 10 10
Vibrio_sp._EJY3 2 2
Vibrio_parahaemolyticus_BB22OP 1 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1 1
Vibrio_nigripulchritudo_VibrioScope 1 1
Alteromonas_macleodii_str._'English_Channel_673' 2 2
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 1 1
Alteromonas_macleodii_ATCC_27126 1 1
Xanthomonas_citri_subsp._citri_Aw12879 2 2
Xanthomonas_campestris_pv._vesicatoria_str._85-10 2 2
Xanthomonas_axonopodis_pv._citrumelo_F1 2 2
Xanthomonas_axonopodis_Xac29-1 2 2
Xanthomonas_oryzae_pv._oryzicola_BLS256 2 2
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 2 2
Xanthomonas_oryzae_pv._oryzae_KACC_10331 2 2
Xanthomonas_campestris_pv._raphani_756C 2 2
Xanthomonas_campestris_pv._campestris_str._8004 2 2
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 2 2
Thioalkalivibrio_nitratireducens_DSM_14787 1 1
Yersinia_pseudotuberculosis_PB1/+ 1 1
Yersinia_pseudotuberculosis_YPIII 1 1
Yersinia_pseudotuberculosis_IP_32953 1 1
Yersinia_pestis_biovar_Microtus_str._91001 1 1
Yersinia_pestis_A1122 1 1
Yersinia_pestis_Z176003 1 1
Yersinia_pestis_D182038 1 1
Yersinia_pestis_D106004 1 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 1 1
Yersinia_pestis_Nepal516 1 1
Yersinia_pestis_Antiqua 1 1
Yersinia_pestis_Angola 1 1
Yersinia_pestis_CO92 1 1
Yersinia_pestis_KIM10+ 1 1
Serratia_sp._AS13 2 2
Serratia_plymuthica_S13 2 2
Serratia_plymuthica_4Rx13 2 2
Serratia_marcescens_FGI94 1 1
Serratia_marcescens_WW4 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1 1
Pantoea_ananatis_LMG_5342 2 2
Pantoea_ananatis_PA13 2 2
Pantoea_ananatis_AJ13355 2 2
Raoultella_ornithinolytica_B6 3 3
Klebsiella_oxytoca_KCTC_1686 2 2
Klebsiella_pneumoniae_JM45 3 3
Klebsiella_pneumoniae_CG43 3 3
Klebsiella_pneumoniae_KCTC_2242 3 3
Klebsiella_pneumoniae_342 3 3
Klebsiella_pneumoniae_subsp._pneumoniae_1084 3 3
Klebsiella_pneumoniae_subsp._pneumoniae_HS11286 3 3
Klebsiella_pneumoniae_subsp._pneumoniae_MGH_78578 3 3
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 2 2
Enterobacter_aerogenes_EA1509E 3 3
Azotobacter_vinelandii_CA6 2 2
Azotobacter_vinelandii_CA 2 2
Pseudomonas_denitrificans_ATCC_13867 3 3
Pseudomonas_syringae_pv._phaseolicola_1448A 2 2
Pseudomonas_syringae_pv._syringae_B728a 2 2
Pseudomonas_stutzeri_CCUG_29243 1 1
Pseudomonas_stutzeri_DSM_10701 1 1
Pseudomonas_stutzeri_DSM_4166 3 3
Pseudomonas_stutzeri_RCH2 1 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 3 3
Pseudomonas_monteilii_SB3101 4 4
Pseudomonas_monteilii_SB3078 4 4
Pseudomonas_putida_H8234 4 4
Pseudomonas_putida_HB3267 3 3
Pseudomonas_putida_NBRC_14164 5 5
Pseudomonas_putida_DOT-T1E 6 6
Pseudomonas_putida_S16 4 4
Pseudomonas_putida_BIRD-1 4 4
Pseudomonas_putida_W619 3 3
Pseudomonas_putida_ND6 6 6
Pseudomonas_putida_KT2440 4 4
Pseudomonas_putida_GB-1 5 5
Pseudomonas_protegens_CHA0 5 5
Pseudomonas_poae_RE*1-1-14 3 3
Pseudomonas_fluorescens_F113 8 8
Pseudomonas_fluorescens_A506 3 3
Pseudomonas_fluorescens_R124 3 3
Pseudomonas_fluorescens_Pf0-1 5 5
Pseudomonas_resinovorans_NBRC_106553 6 6
Pseudomonas_mendocina_NK-01 3 3
Pseudomonas_aeruginosa_SCV20265 3 3
Pseudomonas_aeruginosa_MTB-1 3 3
Pseudomonas_aeruginosa_LES431 3 3
Pseudomonas_aeruginosa_RP73 3 3
Pseudomonas_aeruginosa_B136-33 3 3
Pseudomonas_aeruginosa_PA1R 3 3
Pseudomonas_aeruginosa_PA1 3 3
Pseudomonas_aeruginosa_DK2 3 3
Pseudomonas_aeruginosa_NCGM2.S1 3 3
Pseudomonas_aeruginosa_M18 3 3
Pseudomonas_aeruginosa_LESB58 3 3
Pseudomonas_aeruginosa_PA7 4 4
Pseudomonas_aeruginosa_PAO1 3 3
Acinetobacter_genomosp._13TU__RUH2624 3 3
Acinetobacter_sp.__SH024 3 3
Acinetobacter_calcoaceticus_ruh2202 3 3
Acinetobacter_baumannii_ZW85-1 3 3
Acinetobacter_baumannii_TYTH-1 3 3
Acinetobacter_baumannii_BJAB0868 3 3
Acinetobacter_baumannii_BJAB0715 3 3
Acinetobacter_baumannii_BJAB07104 3 3
Acinetobacter_baumannii_TCDC-AB0715 3 3
Acinetobacter_baumannii_D1279779 3 3
Acinetobacter_baumannii_MDR-TJ 3 3
Acinetobacter_baumannii_1656-2 3 3
Acinetobacter_baumannii__ATCC_19606 3 3
Acinetobacter_baumannii_AB307-0294 3 3
Acinetobacter_baumannii_AYE 3 3
Acinetobacter_baumannii_SDF 3 3
Acinetobacter_baumannii_MDR-ZJ06 3 3
Acinetobacter_baumannii_AB0057 3 3
Acinetobacter_baumannii_ACICU 3 3
Acinetobacter_radioresistens__SH164 2 2
Acinetobacter_junii__SH205 1 1
Acinetobacter_johnsonii__SH046 3 3

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Others
Genome     Number   Proteins
Moniliophthora_perniciosa_FA553__(Genome_survey) 8 8
Wolbachia_endosymbiont_of_Brugia_malayi_v1.0_(Broad_Institute) 1 1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1 1
NCBI_plasmid_sequences_(Plasmids) 126 126
Protein_Data_Bank_(all_PDB_sequenc) 448 448
STRING_v9.0.5_(STRING) 811 808
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1286 1286
Uniprot_2018_03_genome 21275 21200
NCBI_2017_08_genome 60043 59921
TargetDB__(Targets) 5 5
PDB_chains_(SCOP_1.75)_(PDB) 13 13

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