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Domain combinations for PHL pollen allergen superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a PHL pollen allergen domain in that genome.

Complete genomes
Genome     Number   Proteins
Saccoglossus_kowalevskii_v3.0 5 3
Oikopleura_dioica 1 1
Adineta_vaga 1 1
Crassostrea_gigas_22   (Pacific oyster)   2 2
Lottia_gigantea_   (Owl limpet)   2 2
Conidiobolus_coronatus_NRRL28638_v1.0 4 4
Mixia_osmundae_IAM_14324_v1.0 1 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 4 4
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3 3
Melampsora_laricis-populina_ 3 3
Schizophyllum_commune_ 1 1
Apiospora_montagnei_NRRL_25634_v1.0 2 2
Magnaporthe_poae_ATCC_64411_22 1 1
Magnaporthe_grisea_70-15_ 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   2 2
Verticillium_albo-atrum_VaMs.102_ 1 1
Verticillium_dahliae_VdLs.17_ 1 1
Glomerella_graminicola_22 2 2
Fusarium_graminearum_ 3 3
Nectria_haematococca_mpVI_ 3 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2 2
Fusarium_verticillioides_7600_ 3 3
Trichoderma_asperellum_CBS_433.97_v1.0 1 1
Trichoderma_atroviride_ 1 1
Trichoderma_citrinoviride_v1.0 1 1
Trichoderma_reesei_1.2 1 1
Trichoderma_virens_Gv29-8_ 1 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1 1
Trichoderma_harzianum_CBS_226.95_v1.0 1 1
Sclerotinia_sclerotiorum_ 1 1
Didymella_exigua_CBS_183.55_v1.0 1 1
Leptosphaeria_maculans_22 1 1
Setosphaeria_turcica_v1.0 1 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1 1
Cochliobolus_victoriae_FI3_v1.0 2 2
Cochliobolus_carbonum_26-R-13_v1.0 2 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2 2
Alternaria_brassicicola_ 1 1
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 1 1
Mycosphaerella_graminicola_IPO323_ 2 2
Dothistroma_septosporum 1 1
Septoria_musiva_v1.0 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 2 2
Aspergillus_zonatus_v1.0 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1 1
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_acidus_v1.0 1 1
Aspergillus_fumigatus_Af293 2 2
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_nidulans_FGSC_A4_ 1 1
Aspergillus_sydowii_v1.0 1 1
Aspergillus_versicolor_v1.0 1 1
Aspergillus_carbonarius_ITEM_5010_ 1 1
Neosartorya_fischeri_NRRL_181_ 2 2
Aspergillus_terreus_NIH2624_ 1 1
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 1 1
Aspergillus_oryzae_RIB40_ 1 1
Aspergillus_niger_22 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Aspergillus_clavatus_NRRL_1_ 1 1
Penicillium_marneffei_ATCC_18224_ 2 2
Allomyces_macrogynus_ATCC_38327_ 5 5
Dictyostelium_discoideum 4 4
Dictyostelium_purpureum_ 4 4
Entamoeba_dispar_1.2 3 3
Entamoeba_invadens_1.2 7 7
Entamoeba_histolytica_1 3 3
Selaginella_moellendorffii_ 36 36
Pinus_taeda   (Loblolly pine)   134 123
Picea_abies   (Norway spruce)   61 59
Eucalyptus_grandis_v201   (Rose gum)   47 46
Theobroma_cacao_B97-61/B2_v1   (Cacao)   28 28
Gossypium_raimondii_v221 73 73
Citrus_clementina_v165 35 35
Citrus_sinensis_v154   (Sweet orange)   33 33
Thellungiella_halophila_v173 36 36
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   56 55
Capsella_rubella_v183 38 38
Arabidopsis_lyrata_   (Lyrate rockcress)   34 33
Arabidopsis_thaliana_10   (Thale cress)   42 42
Carica_papaya_   (Papaya)   26 26
Medicago_truncatula_   (Barrel medic)   50 50
Phaseolus_vulgaris_v186   (French bean)   40 40
Glycine_max_v109   (Soybean)   88 88
Cucumis_sativus_v122   (Cucumber)   38 38
Fragaria_vesca_   (Wild strawberry)   34 33
Malus_domestica_v196   (Apple)   60 60
Prunus_persica_v139   (Peach)   26 26
Linum_usitatissimum_v200   (Flax)   65 65
Manihot_esculenta_v147   (Cassava)   45 45
Populus_trichocarpa_v156   (Black cottonwood)   39 39
Vitis_vinifera_   (Wine grape)   29 29
Mimulus_guttatus_v140   (Spotted monkey flower)   38 38
Solanum_lycopersicum_v.2.3   (Tomato)   40 40
Solanum_tuberosum_   (Potato)   48 45
Actinidia_chinensis_Hongyang_ 20 20
Aquilegia_coerulea_v195 25 25
Triticum_urartu_22 73 70
Triticum_aestivum_22   (Bread wheat)   159 158
Aegilops_tauschii_22 82 82
Brachypodium_distachyon_   (Stiff brome)   66 65
Oryza_barthii_22   (African wild rice)   72 63
Oryza_meridionalis_22 59 53
Oryza_glumaepatula_22 76 70
Oryza_glaberrima   (African rice)   45 43
Oryza_punctata_22 64 60
Oryza_nivara_22 70 62
Oryza_brachyantha_22   (Malo sina)   52 52
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   78 76
Oryza_sativa_v193   (Rice)   78 76
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   41 41
Panicum_virgatum_v202   (Switchgrass)   135 135
Setaria_italica_v164   (Foxtail millet)   84 84
Zea_mays_subsp._mays_   (Maize)   122 122
Zea_mays_v181   (Maize)   126 126
Sorghum_bicolor_   (Sorghum)   90 90
Musa_balbisiana   (Balbis banana)   49 49
Musa_acuminata_22   (Wild Malaysian banana)   54 54
Amborella_trichopoda_22 13 13
Physcomitrella_patens 36 36
Coccomyxa_subellipsoidea_sp._C-169_v2 10 10
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Chlorella_variabilis_sp._NC64A_ 4 4
Chlorella_vulgaris_ 8 8
Volvox_carteri_f._nagariensis_ 2 2
Volvox_carteri_v199 2 2
Chlamydomonas_reinhardtii_4.0 2 2
Albugo_laibachii_22 2 2
Pythium_ultimum_v1.7-2 1 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1 1
Naegleria_gruberi_ 1 1
Nakamurella_multipartita_DSM_44233 1 1
Frankia_sp._EAN1pec 1 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_scabiei_87.22 1 1
Amycolatopsis_mediterranei_U32 1 1
Verrucosispora_maris_AB-18-032 1 1
Micromonospora_sp._L5 1 1
Micromonospora_aurantiaca_ATCC_27029 1 1
Actinoplanes_sp._N902-109 2 2
Actinoplanes_sp._SE50/110 1 1
Actinoplanes_missouriensis_431 1 1
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 2 2
Herpetosiphon_aurantiacus_DSM_785 2 2
Roseiflexus_sp._RS-1 1 1
Roseiflexus_castenholzii_DSM_13941 1 1
Chloroflexus_sp._MS-G 1 1
Chloroflexus_sp._Y-400-fl 1 1
Chloroflexus_aurantiacus_J-10-fl 1 1
Clostridium_clariflavum_DSM_19732 2 2
Paenibacillus_terrae_HPL-003 1 1
Paenibacillus_polymyxa_M1 1 1
Bacillus_sp._JS 1 1
Bacillus_atrophaeus_1942 1 1
Bacillus_subtilis_subsp._subtilis_str._168 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Sorangium_cellulosum_'So_ce_56' 2 2
Stigmatella_aurantiaca_DW4/3-1 2 2
Corallococcus_coralloides_DSM_2259 1 1
Myxococcus_xanthus_DK_1622 1 1
Myxococcus_fulvus_HW-1 1 1
Leptothrix_cholodnii_SP-6 1 1
Ralstonia_solanacearum_CFBP2957 1 1
Acidovorax_citrulli_AAC00-1 1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1
Hahella_chejuensis_KCTC_2396 1 1
Xylella_fastidiosa_M23 1 1
Xanthomonas_albilineans_GPE_PC73 1 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 1 1
Xanthomonas_campestris_pv._campestris_str._B100 1 1
Dickeya_zeae_Ech1591 1 1
Pectobacterium_wasabiae_WPP163 1 1
Pectobacterium_sp._SCC3193 1 1
Pectobacterium_atrosepticum_SCRI1043 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1 1

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Strains
Genome     Number   Proteins
Aspergillus_fumigatus_A1163_ 2 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   26 26
Hordeum_vulgare_22   (Domesticated barley)   72 72
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   80 78
Stanieria_cyanosphaera_PCC_7437 1 1
Frankia_sp._EuI1c 1 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Actinoplanes_friuliensis_DSM_7358 1 1
Nocardia_brasiliensis_ATCC_700358 1 1
Clavibacter_michiganensis_subsp._sepedonicus 1 1
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1 1
Paenibacillus_polymyxa_CR1 1 1
Paenibacillus_polymyxa_SC2 1 1
Paenibacillus_polymyxa_E681 1 1
Bacillus_licheniformis_9945A 1 1
Bacillus_subtilis_PY79 1 1
Bacillus_subtilis_XF-1 1 1
Bacillus_subtilis_QB928 1 1
Bacillus_subtilis_BSn5 1 1
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 1 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Sorangium_cellulosum_So0157-2 1 1
Myxococcus_stipitatus_DSM_14675 1 1
Ralstonia_solanacearum_FQY_4 1 1
Ralstonia_solanacearum_Po82 1 1
Ralstonia_solanacearum_PSI07 1 1
Ralstonia_solanacearum_CMR15 1 1
Ralstonia_solanacearum_GMI1000 1 1
Xylella_fastidiosa_subsp._fastidiosa_GB514 1 1
Xylella_fastidiosa_M12 1 1
Xylella_fastidiosa_Temecula1 1 1
Xylella_fastidiosa_9a5c 1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1 1
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 1 1
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1 1
Xanthomonas_campestris_pv._raphani_756C 1 1
Xanthomonas_campestris_pv._campestris_str._8004 1 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1 1
Dickeya_dadantii_Ech586 1 1
Dickeya_dadantii_3937 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1 1

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Longest transcript per gene
Genome     Number   Proteins
Arabidopsis_thaliana_10   (Thale cress)   35 35

Others
Genome     Number   Proteins
Picea_sitchensis__(Incomplete)   (Sitka spruce)   4 4
Lotus_japonicus__(Early_assembly) 27 27
Malus_x_domestica_(Duplicate)   (Apple)   60 60
Ricinus_communis__(Early_assembly)   (Castor bean)   25 25
Nicotiana_benthamiana_0.4.4_(Early_draft) 72 67
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   40 40
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   40 40
Phoenix_dactylifera__(Early_draft)   (Date palm)   14 14
NCBI_plasmid_sequences_(Plasmids) 4 4
PDB_chains_(SCOP_1.75)_(PDB) 2 2
Protozoadb_2010_08_(Protozoadb) 12 12
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 71 71
TargetDB__(Targets) 3 3
STRING_v9.0.5_(STRING) 532 527
NCBI_2017_08_genome 5244 5241
Uniprot_2018_03_genome 6818 6736
Protein_Data_Bank_(all_PDB_sequenc) 29 29

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