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Domain combinations for gamma-Crystallin-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a gamma-Crystallin-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   39 26
Pan_troglodytes_76_2.1.4   (Chimpanzee)   21 15
Gorilla_gorilla_76_3.1   (Western gorilla)   28 20
Pongo_abelii_76_2   (Sumatran orangutan)   17 13
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   20 14
Papio_anubis_76   (Olive baboon)   19 15
Macaca_mulatta_76_1   (Rhesus monkey)   30 22
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   36 25
Otolemur_garnettii_76_3   (Small-eared galago)   22 16
Microcebus_murinus_76_1   (Gray mouse lemur)   22 13
Rattus_norvegicus_76_5.0   (Norway rat)   24 18
Mus_musculus_76_38   (House mouse)   43 35
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   17 11
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   22 17
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   21 14
Cavia_porcellus_76_3   (Domestic guinea pig)   22 16
Oryctolagus_cuniculus_76_2   (Rabbit)   23 17
Ochotona_princeps_76   (American pika)   20 14
Tupaia_belangeri_76   (Northern tree shrew)   20 13
Sus_scrofa_76_10.2   (Pig)   21 14
Bos_taurus_76_3.1   (Cattle)   24 18
Ovis_aries_76_3.1   (Sheep)   22 16
Vicugna_pacos_76_1   (Alpaca)   15 9
Tursiops_truncatus_76_1   (Bottlenose dolphin)   21 14
Mustela_putorius_furo_76_1.0   (Domestic ferret)   21 15
Ailuropoda_melanoleuca_76_1   (Giant panda)   24 16
Canis_familiaris_76_3.1   (Dog)   32 24
Felis_catus_76_6.2   (Domestic cat)   24 16
Equus_caballus_76_2   (Horse)   23 15
Myotis_lucifugus_76_2.0   (Little brown bat)   19 12
Pteropus_vampyrus_76_1   (Large flying fox)   24 15
Sorex_araneus_76_1   (European shrew)   12 6
Erinaceus_europaeus_76   (Western European hedgehog)   12 9
Procavia_capensis_76_1   (Cape rock hyrax)   19 12
Loxodonta_africana_76_3   (African savanna elephant)   28 18
Echinops_telfairi_76   (Small Madagascar hedgehog)   17 11
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   22 14
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   17 10
Macropus_eugenii_76_1.0   (Tammar wallaby)   20 12
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   29 19
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   25 19
Ornithorhynchus_anatinus_76_5   (Platypus)   24 17
Petromyzon_marinus_76_7.0   (Sea lamprey)   17 13
Meleagris_gallopavo_76_2   (Turkey)   26 18
Gallus_gallus_76_4   (Chicken)   16 11
Anas_platyrhynchos_76_1.0   (Mallard)   16 10
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   12 8
Ficedula_albicollis_76_1.0   (Collared flycatcher)   18 12
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   22 16
Anolis_carolinensis_76_2.0   (Green anole)   15 9
Xenopus_laevis_   (African clawed frog)   56 56
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   72 64
Latimeria_chalumnae_76_1   (Coelacanth)   43 29
Lepisosteus_oculatus_76   (Spotted gar)   55 46
Gadus_morhua_76_1   (Atlantic cod)   50 42
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   49 43
Takifugu_rubripes_76_4   (Torafugu)   132 111
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   75 65
Oryzias_latipes_76_1   (Japanese medaka)   60 53
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   31 25
Poecilia_formosa_76   (Amazon molly)   61 39
Oreochromis_niloticus_76_1.0   (Nile tilapia)   51 45
Astyanax_mexicanus_76   (Mexican tetra)   58 42
Danio_rerio_76_9   (Zebrafish)   100 90
Oikopleura_dioica 2 2
Ciona_intestinalis_76   (Vase tunicate)   1 1
Adineta_vaga 1 1
Capitella_sp._I_ 1 1
Lucilia_cuprina   (Australian sheep blowfly)   1 1
Daphnia_pulex_   (Common water flea)   1 1
Pristionchus_pacificus_ 4 4
Schistosoma_mansoni_ 2 2
Mnemiopsis_leidyi   (Sea walnut)   11 11
Acropora_digitifera_v1.0 4 4
Nematostella_vectensis_1.0   (Starlet sea anemone)   1 1
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Mortierella_verticillata_NRRL_6337_ 1 1
Sphaerobolus_stellatus_v1.0 3 3
Heterobasidion_annosum_ 1 1
Magnaporthe_grisea_70-15_ 2 2
Podospora_anserina_ 5 5
Chaetomium_globosum_CBS_148.51_ 1 1
Neurospora_tetrasperma_ 1 1
Neurospora_crassa_OR74A_ 1 1
Verticillium_albo-atrum_VaMs.102_ 1 1
Verticillium_dahliae_VdLs.17_ 1 1
Glomerella_graminicola_22 2 2
Fusarium_graminearum_ 1 1
Trichoderma_asperellum_CBS_433.97_v1.0 2 2
Trichoderma_atroviride_ 1 1
Trichoderma_citrinoviride_v1.0 1 1
Trichoderma_reesei_1.2 1 1
Trichoderma_harzianum_CBS_226.95_v1.0 1 1
Stagonospora_nodorum_ 1 1
Paracoccidioides_brasiliensis_Pb18_ 1 1
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_rubrum_CBS_118892_ 1 1
Aspergillus_zonatus_v1.0 1 1
Aspergillus_terreus_NIH2624_ 1 1
Dictyostelium_discoideum 2 2
Dictyostelium_purpureum_ 2 2
Selaginella_moellendorffii_ 20 20
Pinus_taeda   (Loblolly pine)   3 3
Picea_abies   (Norway spruce)   9 9
Triticum_aestivum_22   (Bread wheat)   2 2
Brachypodium_distachyon_   (Stiff brome)   1 1
Panicum_virgatum_v202   (Switchgrass)   5 5
Setaria_italica_v164   (Foxtail millet)   3 3
Zea_mays_subsp._mays_   (Maize)   2 2
Zea_mays_v181   (Maize)   2 2
Sorghum_bicolor_   (Sorghum)   2 2
Amborella_trichopoda_22 2 2
Ostreococcus_lucimarinus_CCE9901_ 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Cyanophora_paradoxa_ 1 1
Pythium_arrhenomanes_ATCC_12531_22 4 4
Pythium_ultimum_v1.7-2 4 4
Phytophthora_sojae_1.1 2 2
Phytophthora_infestans_T30-4_ 1 1
Paramecium_tetraurelia_ 51 50
Tetrahymena_thermophila_SB210_1_ 11 11
Ichthyophthirius_multifiliis_strain_G5_ 4 4
Guillardia_theta_CCMP2712_v1.0_ 3 3
Leptolyngbya_sp._PCC_7376 1 1
Gloeocapsa_sp._PCC_7428 1 1
Microcystis_aeruginosa_NIES-843 1 1
Nostoc_sp._PCC_7524 1 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1 1
Streptosporangium_roseum_DSM_43021 1 1
Kitasatospora_setae_KM-6054 2 2
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_flavogriseus_ATCC_33331 2 2
Streptomyces_sp._SirexAA-E 1 1
Streptomyces_bingchenggensis_BCW-1 4 4
Streptomyces_scabiei_87.22 4 4
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 2 2
Actinosynnema_mirum_DSM_43827 1 1
Kribbella_flavida_DSM_17836 2 2
Microbacterium_testaceum_StLB037 1 1
Arthrobacter_chlorophenolicus_A6 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1 1
Dehalococcoides_ethenogenes_195 1 1
Dehalogenimonas_lykanthroporepellens_BL-DC-9 3 3
Anaerolinea_thermophila_UNI-1 1 1
Roseiflexus_castenholzii_DSM_13941 1 1
Clostridium_cellulolyticum_H10 1 1
Clostridium_sp._BNL1100 1 1
Clostridium_beijerinckii_NCIMB_8052 1 1
Paenibacillus_sp._JDR-2 1 1
Paenibacillus_terrae_HPL-003 1 1
Paenibacillus_mucilaginosus_3016 1 1
Paenibacillus_polymyxa_M1 1 1
Chlorobium_chlorochromatii_CaD3 1 1
Niastella_koreensis_GR20-10 8 6
Chitinophaga_pinensis_DSM_2588 10 8
Fibrella_aestuarina 3 2
Bacteroides_fragilis_YCH46 1 1
Zobellia_galactanivorans 1 1
Flavobacterium_johnsoniae_UW101 2 2
Opitutus_terrae_PB90-1 1 1
Dictyoglomus_thermophilum_H-6-12 2 1
Granulicella_mallensis_MP5ACTX8 1 1
Candidatus_Koribacter_versatilis_Ellin345 2 1
Desulfococcus_oleovorans_Hxd3 1 1
Haliangium_ochraceum_DSM_14365 3 2
Sorangium_cellulosum_'So_ce_56' 1 1
Stigmatella_aurantiaca_DW4/3-1 7 6
Corallococcus_coralloides_DSM_2259 1 1
Myxococcus_xanthus_DK_1622 2 1
Myxococcus_fulvus_HW-1 2 2
Azoarcus_sp._KH32C 1 1
Rhodoferax_ferrireducens_T118 1 1
Nitrosospira_multiformis_ATCC_25196 1 1
Brevundimonas_subvibrioides_ATCC_15264 1 1
Caulobacter_crescentus_NA1000 2 2
Caulobacter_segnis_ATCC_21756 1 1
Phenylobacterium_zucineum_HLK1 1 1
Sphingopyxis_alaskensis_RB2256 1 1
Sphingomonas_sp._MM-1 1 1
Maricaulis_maris_MCS10 2 1
Hyphomonas_neptunium_ATCC_15444 2 2
Roseobacter_denitrificans_OCh_114 1 1
Rhodospirillum_centenum_SW 1 1
Mesorhizobium_opportunistum_WSM2075 1 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 1 1
Pelagibacterium_halotolerans_B2 2 2
Methylocystis_sp._SC2 1 1
Saccharophagus_degradans_2-40 1 1
Teredinibacter_turnerae_T7901 1 1
Cellvibrio_japonicus_Ueda107 4 4
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1 1
Vibrio_fischeri_MJ11 1 1
Vibrio_cholerae_O395 2 2
Photobacterium_profundum_SS9 4 2
Psychromonas_ingrahamii_37 3 1
Hahella_chejuensis_KCTC_2396 2 2
Marinomonas_posidonica_IVIA-Po-181 2 1
Photorhabdus_asymbiotica 1 1
Edwardsiella_ictaluri_93-146 2 2
Edwardsiella_tarda_EIB202 2 2
Rahnella_sp._Y9602 1 1
Yersinia_pseudotuberculosis_IP_31758 4 2
Yersinia_pestis_Pestoides_F 3 2
Yersinia_enterocolitica_subsp._enterocolitica_8081 5 3
Methanosaeta_thermophila_PT 1 1
Methanosarcina_acetivorans_C2A 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   113 103
Paracoccidioides_brasiliensis_Pb01_ 1 1
Paracoccidioides_brasiliensis_Pb03_ 1 1
Chroococcidiopsis_thermalis_PCC_7203 2 2
Dactylococcopsis_salina_PCC_8305 1 1
Oscillatoria_nigro-viridis_PCC_7112 2 2
Cylindrospermum_stagnale_PCC_7417 1 1
Streptomyces_albus_J1074 1 1
Streptomyces_davawensis_JCM_4913 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 2 2
Saccharothrix_espanaensis_DSM_44229 1 1
Amycolatopsis_orientalis_HCCB10007 2 2
Dehalococcoides_mccartyi_GY50 1 1
Dehalococcoides_sp._VS 1 1
Paenibacillus_sp._Y412MC10 3 3
Paenibacillus_mucilaginosus_KNP414 1 1
Paenibacillus_polymyxa_CR1 1 1
Paenibacillus_polymyxa_SC2 1 1
Bacillus_thuringiensis_MC28 1 1
Echinicola_vietnamensis_DSM_17526 2 2
Sorangium_cellulosum_So0157-2 4 3
Myxococcus_stipitatus_DSM_14675 1 1
Variovorax_paradoxus_B4 1 1
Variovorax_paradoxus_EPS 1 1
Caulobacter_crescentus_CB15 2 2
Aeromonas_hydrophila_ML09-119 1 1
Vibrio_fischeri_ES114 2 2
Vibrio_cholerae_M66-2 2 1
Vibrio_cholerae_O395 2 2
Vibrio_cholerae_IEC224 2 1
Vibrio_cholerae_O1_str._2010EL-1786 2 1
Vibrio_cholerae_MJ-1236 2 1
Morganella_morganii_subsp._morganii_KT 1 1
Edwardsiella_tarda_C07-087 2 2
Edwardsiella_tarda_FL6-60 2 2
Rahnella_aquatilis_HX2 2 1
Yersinia_pseudotuberculosis_PB1/+ 3 2
Yersinia_pseudotuberculosis_YPIII 4 3
Yersinia_pseudotuberculosis_IP_32953 3 2
Yersinia_pestis_biovar_Microtus_str._91001 3 2
Yersinia_pestis_A1122 3 2
Yersinia_pestis_Z176003 3 2
Yersinia_pestis_D182038 3 2
Yersinia_pestis_D106004 3 2
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 3 2
Yersinia_pestis_Nepal516 3 2
Yersinia_pestis_Antiqua 3 2
Yersinia_pestis_Angola 3 2
Yersinia_pestis_CO92 3 2
Yersinia_pestis_KIM10+ 3 2
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 4 3
Yersinia_enterocolitica_subsp._palearctica_Y11 6 4

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   21 15
Pan_troglodytes_69_2.1.4   (Chimpanzee)   21 15
Gorilla_gorilla_69_3.1   (Western gorilla)   21 15
Pongo_abelii_69_2   (Sumatran orangutan)   17 13
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   19 13
Macaca_mulatta_69_1   (Rhesus monkey)   22 16
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   21 15
Otolemur_garnettii_69_3   (Small-eared galago)   22 16
Microcebus_murinus_69_1   (Gray mouse lemur)   22 13
Rattus_norvegicus_69_3.4   (Norway rat)   18 12
Mus_musculus_69_38   (House mouse)   23 17
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   17 11
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   21 16
Cavia_porcellus_69_3   (Domestic guinea pig)   20 14
Oryctolagus_cuniculus_69_2   (Rabbit)   21 15
Ochotona_princeps_69   (American pika)   20 14
Tupaia_belangeri_69   (Northern tree shrew)   20 13
Sus_scrofa_69_10.2   (Pig)   14 11
Bos_taurus_69_3.1   (Cattle)   23 17
Vicugna_pacos_69_1   (Alpaca)   15 9
Tursiops_truncatus_69_1   (Bottlenose dolphin)   21 14
Mustela_putorius_furo_69_1.0   (Domestic ferret)   21 15
Ailuropoda_melanoleuca_69_1   (Giant panda)   22 14
Canis_familiaris_69_3.1   (Dog)   20 16
Felis_catus_69   (Domestic cat)   19 14
Equus_caballus_69_2   (Horse)   20 14
Myotis_lucifugus_69_2.0   (Little brown bat)   18 11
Pteropus_vampyrus_69_1   (Large flying fox)   24 15
Sorex_araneus_69_1   (European shrew)   12 6
Erinaceus_europaeus_69   (Western European hedgehog)   12 9
Procavia_capensis_69_1   (Cape rock hyrax)   19 12
Loxodonta_africana_69_3   (African savanna elephant)   21 15
Echinops_telfairi_69   (Small Madagascar hedgehog)   17 11
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   19 12
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   17 10
Macropus_eugenii_69_1.0   (Tammar wallaby)   20 12
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   24 16
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   24 18
Ornithorhynchus_anatinus_69_5   (Platypus)   19 14
Petromyzon_marinus_69_7.0   (Sea lamprey)   14 12
Meleagris_gallopavo_69_2   (Turkey)   17 12
Gallus_gallus_69_2   (Chicken)   18 12
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   12 8
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   18 14
Anolis_carolinensis_69_2.0   (Green anole)   15 9
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   70 62
Latimeria_chalumnae_69_1   (Coelacanth)   43 29
Gadus_morhua_69_1   (Atlantic cod)   46 38
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   44 38
Takifugu_rubripes_69_4   (Torafugu)   40 32
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   48 42
Oryzias_latipes_69_1   (Japanese medaka)   39 33
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   31 25
Oreochromis_niloticus_69_1.0   (Nile tilapia)   47 41
Danio_rerio_69_9   (Zebrafish)   68 62
Ciona_intestinalis_69   (Vase tunicate)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   39 27
Homo_sapiens__(NCBI_version)   (Human)   26 18
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   23 17
Moniliophthora_perniciosa_FA553__(Genome_survey) 1 1
Ricinus_communis__(Early_assembly)   (Castor bean)   1 1
NCBI_plasmid_sequences_(Plasmids) 37 37
TargetDB__(Targets) 25 13
UniProt__viral_sequences_(Viral) 4 4
PDB_chains_(SCOP_1.75)_(PDB) 29 28
Protein_Data_Bank_(all_PDB_sequenc) 143 141
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 533 533
STRING_v9.0.5_(STRING) 836 663
NCBI_viral_sequences_(Viral) 6 6
Uniprot_2018_03_genome 8220 6715
NCBI_2017_08_genome 15994 12520

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