SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Spermadhesin, CUB domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Spermadhesin, CUB domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   549 207
Pan_troglodytes_76_2.1.4   (Chimpanzee)   156 52
Gorilla_gorilla_76_3.1   (Western gorilla)   240 78
Pongo_abelii_76_2   (Sumatran orangutan)   156 55
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   174 54
Papio_anubis_76   (Olive baboon)   142 57
Macaca_mulatta_76_1   (Rhesus monkey)   300 105
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   314 109
Otolemur_garnettii_76_3   (Small-eared galago)   156 52
Microcebus_murinus_76_1   (Gray mouse lemur)   125 46
Rattus_norvegicus_76_5.0   (Norway rat)   156 61
Mus_musculus_76_38   (House mouse)   266 89
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   133 42
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   129 54
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   157 51
Cavia_porcellus_76_3   (Domestic guinea pig)   145 52
Oryctolagus_cuniculus_76_2   (Rabbit)   158 53
Ochotona_princeps_76   (American pika)   133 47
Tupaia_belangeri_76   (Northern tree shrew)   133 47
Sus_scrofa_76_10.2   (Pig)   157 76
Bos_taurus_76_3.1   (Cattle)   164 61
Ovis_aries_76_3.1   (Sheep)   205 64
Vicugna_pacos_76_1   (Alpaca)   114 39
Tursiops_truncatus_76_1   (Bottlenose dolphin)   149 49
Mustela_putorius_furo_76_1.0   (Domestic ferret)   167 54
Ailuropoda_melanoleuca_76_1   (Giant panda)   178 56
Canis_familiaris_76_3.1   (Dog)   219 77
Felis_catus_76_6.2   (Domestic cat)   157 53
Equus_caballus_76_2   (Horse)   304 67
Myotis_lucifugus_76_2.0   (Little brown bat)   132 45
Pteropus_vampyrus_76_1   (Large flying fox)   155 53
Sorex_araneus_76_1   (European shrew)   103 34
Erinaceus_europaeus_76   (Western European hedgehog)   135 44
Procavia_capensis_76_1   (Cape rock hyrax)   130 44
Loxodonta_africana_76_3   (African savanna elephant)   182 62
Echinops_telfairi_76   (Small Madagascar hedgehog)   130 42
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   189 68
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   101 37
Macropus_eugenii_76_1.0   (Tammar wallaby)   131 45
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   137 60
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   152 54
Ornithorhynchus_anatinus_76_5   (Platypus)   140 63
Saccoglossus_kowalevskii_v3.0 623 240
Petromyzon_marinus_76_7.0   (Sea lamprey)   80 30
Meleagris_gallopavo_76_2   (Turkey)   143 61
Gallus_gallus_76_4   (Chicken)   147 49
Anas_platyrhynchos_76_1.0   (Mallard)   150 53
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   135 51
Ficedula_albicollis_76_1.0   (Collared flycatcher)   147 48
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   171 60
Anolis_carolinensis_76_2.0   (Green anole)   135 44
Xenopus_laevis_   (African clawed frog)   238 98
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   219 83
Latimeria_chalumnae_76_1   (Coelacanth)   166 71
Lepisosteus_oculatus_76   (Spotted gar)   215 73
Gadus_morhua_76_1   (Atlantic cod)   166 59
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   256 95
Takifugu_rubripes_76_4   (Torafugu)   616 235
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   195 66
Oryzias_latipes_76_1   (Japanese medaka)   164 61
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   179 56
Poecilia_formosa_76   (Amazon molly)   174 60
Oreochromis_niloticus_76_1.0   (Nile tilapia)   243 93
Astyanax_mexicanus_76   (Mexican tetra)   184 71
Danio_rerio_76_9   (Zebrafish)   276 104
Oikopleura_dioica 168 103
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   203 66
Ciona_intestinalis_76   (Vase tunicate)   132 71
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   606 293
Adineta_vaga 32 27
Octopus_bimaculoides_280 108 50
Crassostrea_gigas_22   (Pacific oyster)   226 128
Lottia_gigantea_   (Owl limpet)   146 79
Helobdella_robusta_ 83 43
Capitella_sp._I_ 188 119
Danaus_plexippus_OGS1.0   (Monarch butterfly)   80 33
Heliconius_melpomene_   (Postman butterfly)   31 20
Bombyx_mori_   (Domestic silkworm)   46 26
Nasonia_vitripennis_   (Jewel wasp)   57 22
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   213 44
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   64 22
Linepithema_humile_v1.1   (Argentine ant)   74 29
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   57 32
Solenopsis_invicta_v.2.2.3   (Red fire ant)   61 28
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   68 25
Atta_cephalotes_v1.1 67 31
Camponotus_floridanus_v3.3   (Florida carpenter ant)   69 25
Lucilia_cuprina   (Australian sheep blowfly)   95 28
Drosophila_grimshawi_1.3 102 32
Drosophila_willistoni_1.3 93 32
Drosophila_pseudoobscura_2.13 96 32
Drosophila_persimilis_1.3 89 31
Drosophila_suzukii 129 33
Drosophila_yakuba_1.3 96 31
Drosophila_simulans_1.3 63 29
Drosophila_sechellia_1.3 81 30
Drosophila_melanogaster_76_5   (Fruit fly)   150 48
Drosophila_erecta_1.3 95 32
Drosophila_ananassae_1.3 94 32
Drosophila_virilis_1.2 93 31
Drosophila_mojavensis_1.3 95 33
Megaselia_scalaris_22 25 17
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   109 35
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   75 31
Anopheles_darlingi_22   (American malaria mosquito)   60 19
Anopheles_gambiae_49_3j   (African malaria mosquito)   65 25
Tribolium_castaneum_3.0   (Red flour beetle)   76 29
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   54 24
Acyrthosiphon_pisum_   (Pea aphid)   92 16
Rhodnius_prolixus_22 93 39
Daphnia_pulex_   (Common water flea)   170 98
Strigamia_maritima_22 104 39
Sarcoptes_scabiei 63 27
Tetranychus_urticae_   (Two-spotted spider mite)   109 48
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   94 44
Pristionchus_pacificus_ 144 115
Meloidogyne_incognita_   (Southern root-knot nematode)   56 27
Meloidogyne_hapla_ 28 14
Onchocerca_volvulus_22 62 23
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   74 26
Caenorhabditis_japonica_ 79 39
Caenorhabditis_brenneri_ 149 99
Caenorhabditis_remanei_ 131 84
Caenorhabditis_elegans_76_235   (Roundworm)   143 86
Caenorhabditis_briggsae_2 108 61
Trichinella_spiralis_22 94 30
Hymenolepis_microstoma_ 13 4
Echinococcus_multilocularis_ 14 5
Echinococcus_granulosus_ 14 5
Taenia_solium_   (Pork tapeworm)   9 7
Schistosoma_mansoni_ 18 10
Mnemiopsis_leidyi   (Sea walnut)   18 10
Thelohanellus_kitauei 2 2
Acropora_digitifera_v1.0 253 159
Nematostella_vectensis_1.0   (Starlet sea anemone)   130 76
Hydra_vulgaris 70 28
Amphimedon_queenslandica 10 8
Trichoplax_adhaerens_ 63 24
Proterospongia_sp._ATCC_50818_ 6 4
Monosiga_brevicollis_ 4 2
Sphaeroforma_arctica_JP610_ 1 1
Capsaspora_owczarzaki_ATCC_30864_ 7 6
Mortierella_verticillata_NRRL_6337_ 2 2
Rhizomucor_miehei_CAU432_ 1 1
Catenaria_anguillulae_PL171_v1.0 1 1
Allomyces_macrogynus_ATCC_38327_ 2 2
Spizellomyces_punctatus_DAOM_BR117_ 2 2
Dictyostelium_discoideum 1 1
Dictyostelium_purpureum_ 1 1
Manihot_esculenta_v147   (Cassava)   1 1
Actinidia_chinensis_Hongyang_ 2 1
Amborella_trichopoda_22 1 1
Coccomyxa_subellipsoidea_sp._C-169_v2 2 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_vulgaris_ 2 1
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Bathycoccus_prasinos_ 1 1
Thecamonas_trahens_ATCC_50062_ 39 25
Bigelowiella_natans_CCMP2755_22 5 3
Cyanophora_paradoxa_ 80 32
Trypanosoma_vivax_ 1 1
Trypanosoma_cruzi_strain_CL_Brener 1 1
Trypanosoma_brucei_gambiense_v4.1 1 1
Trypanosoma_brucei_TREU927_v4.1 1 1
Ectocarpus_siliculosus 1 1
Aureococcus_anophagefferens_ 1 1
Pythium_iwayamai_DAOM_BR242034_22 3 3
Pythium_aphanidermatum_DAOM_BR444_22 2 2
Pythium_vexans_DAOM_BR484_22 3 2
Phytophthora_sojae_1.1 1 1
Phytophthora_infestans_T30-4_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 15 13
Trichomonas_vaginalis_ 3 3
Guillardia_theta_CCMP2712_v1.0_ 20 18
Emiliania_huxleyi_CCMP1516_ 34 31
[Ruminococcus]_obeum 1 1
Saprospira_grandis_str._Lewin 3 2
Flexibacter_litoralis_DSM_6794 3 1
Marivirga_tractuosa_DSM_4126 1 1
Prevotella_ruminicola_23 1 1
Fluviicola_taffensis_DSM_16823 4 4
Lacinutrix_sp._5H-3-7-4 2 2
Croceibacter_atlanticus_HTCC2559 4 2
Aequorivita_sublithincola_DSM_14238 2 2
Zobellia_galactanivorans 1 1
Cellulophaga_algicola_DSM_14237 1 1
Cellulophaga_lytica_DSM_7489 1 1
Flavobacteriaceae_bacterium_3519-10 1 1
Weeksella_virosa_DSM_16922 1 1
Flavobacterium_indicum_GPTSA100-9 3 3
Flavobacterium_psychrophilum_JIP02/86 1 1
Flavobacterium_branchiophilum_FL-15 4 2
Flavobacterium_columnare_ATCC_49512 1 1
Bacteriovorax_marinus_SJ 1 1
Bdellovibrio_bacteriovorus_HD100 4 3
Sulfurovum_sp._NBC37-1 1 1
Pseudoalteromonas_atlantica_T6c 1 1
Glaciecola_sp._4H-3-7+YE-5 1 1
Aciduliprofundum_sp._MAR08-339 1 1
Aciduliprofundum_boonei_T469 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   244 107
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   120 38
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   73 29
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   61 24
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   136 80
Batrachochytrium_dendrobatidis_JAM81_ 1 1
Trypanosoma_brucei_Lister_427_v4.1 1 1
Nonlabens_dokdonensis_DSW-6 4 4
Psychroflexus_torquis_ATCC_700755 1 1
Bdellovibrio_exovorus_JSS 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 5 4
Desulfobacula_toluolica_Tol2 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   167 55
Pan_troglodytes_69_2.1.4   (Chimpanzee)   156 52
Gorilla_gorilla_69_3.1   (Western gorilla)   160 55
Pongo_abelii_69_2   (Sumatran orangutan)   152 53
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   153 50
Macaca_mulatta_69_1   (Rhesus monkey)   168 58
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   156 53
Otolemur_garnettii_69_3   (Small-eared galago)   156 52
Microcebus_murinus_69_1   (Gray mouse lemur)   125 46
Rattus_norvegicus_69_3.4   (Norway rat)   132 51
Mus_musculus_69_38   (House mouse)   154 53
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   133 42
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   115 47
Cavia_porcellus_69_3   (Domestic guinea pig)   141 49
Oryctolagus_cuniculus_69_2   (Rabbit)   127 51
Ochotona_princeps_69   (American pika)   133 47
Tupaia_belangeri_69   (Northern tree shrew)   133 47
Sus_scrofa_69_10.2   (Pig)   126 57
Bos_taurus_69_3.1   (Cattle)   153 55
Vicugna_pacos_69_1   (Alpaca)   114 39
Tursiops_truncatus_69_1   (Bottlenose dolphin)   149 49
Mustela_putorius_furo_69_1.0   (Domestic ferret)   153 52
Ailuropoda_melanoleuca_69_1   (Giant panda)   138 49
Canis_familiaris_69_3.1   (Dog)   156 53
Felis_catus_69   (Domestic cat)   112 42
Equus_caballus_69_2   (Horse)   151 48
Myotis_lucifugus_69_2.0   (Little brown bat)   131 44
Pteropus_vampyrus_69_1   (Large flying fox)   155 53
Sorex_araneus_69_1   (European shrew)   103 34
Erinaceus_europaeus_69   (Western European hedgehog)   135 44
Procavia_capensis_69_1   (Cape rock hyrax)   130 44
Loxodonta_africana_69_3   (African savanna elephant)   140 47
Echinops_telfairi_69   (Small Madagascar hedgehog)   130 42
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   115 47
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   101 37
Macropus_eugenii_69_1.0   (Tammar wallaby)   131 45
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   121 49
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   151 53
Ornithorhynchus_anatinus_69_5   (Platypus)   136 61
Petromyzon_marinus_69_7.0   (Sea lamprey)   79 29
Meleagris_gallopavo_69_2   (Turkey)   118 50
Gallus_gallus_69_2   (Chicken)   137 45
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   131 48
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   146 50
Anolis_carolinensis_69_2.0   (Green anole)   131 44
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   191 68
Latimeria_chalumnae_69_1   (Coelacanth)   144 62
Gadus_morhua_69_1   (Atlantic cod)   165 58
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   176 70
Takifugu_rubripes_69_4   (Torafugu)   154 61
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   175 57
Oryzias_latipes_69_1   (Japanese medaka)   137 46
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   179 56
Oreochromis_niloticus_69_1.0   (Nile tilapia)   194 63
Danio_rerio_69_9   (Zebrafish)   164 69
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   91 36
Ciona_intestinalis_69   (Vase tunicate)   131 70
Drosophila_melanogaster_69_5   (Fruit fly)   98 29
Caenorhabditis_elegans_69_215   (Roundworm)   121 70

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   594 229
Homo_sapiens__(NCBI_version)   (Human)   274 99
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   162 54
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   59 22
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   55 35
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   40 15
Lotus_japonicus__(Early_assembly) 1 1
STRING_v9.0.5_(STRING) 6977 2935
NCBI_viral_sequences_(Viral) 2 2
PDB_chains_(SCOP_1.75)_(PDB) 8 7
Uniprot_2018_03_genome 58517 26023
NCBI_2017_08_genome 81204 31567
Protozoadb_2010_08_(Protozoadb) 9 9
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 174 174
UniProt__viral_sequences_(Viral) 3 3
Protein_Data_Bank_(all_PDB_sequenc) 106 66
TargetDB__(Targets) 125 63

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