SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for SMAD/FHA domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a SMAD/FHA domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   278 278
Pan_troglodytes_76_2.1.4   (Chimpanzee)   49 49
Gorilla_gorilla_76_3.1   (Western gorilla)   71 71
Pongo_abelii_76_2   (Sumatran orangutan)   50 50
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   52 52
Papio_anubis_76   (Olive baboon)   50 50
Macaca_mulatta_76_1   (Rhesus monkey)   95 95
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   108 108
Otolemur_garnettii_76_3   (Small-eared galago)   53 53
Microcebus_murinus_76_1   (Gray mouse lemur)   40 37
Rattus_norvegicus_76_5.0   (Norway rat)   56 56
Mus_musculus_76_38   (House mouse)   129 129
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   40 39
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   48 48
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   52 52
Cavia_porcellus_76_3   (Domestic guinea pig)   44 44
Oryctolagus_cuniculus_76_2   (Rabbit)   53 53
Ochotona_princeps_76   (American pika)   40 40
Tupaia_belangeri_76   (Northern tree shrew)   32 32
Sus_scrofa_76_10.2   (Pig)   66 66
Bos_taurus_76_3.1   (Cattle)   62 62
Ovis_aries_76_3.1   (Sheep)   58 58
Vicugna_pacos_76_1   (Alpaca)   26 26
Tursiops_truncatus_76_1   (Bottlenose dolphin)   47 47
Mustela_putorius_furo_76_1.0   (Domestic ferret)   52 52
Ailuropoda_melanoleuca_76_1   (Giant panda)   58 58
Canis_familiaris_76_3.1   (Dog)   80 80
Felis_catus_76_6.2   (Domestic cat)   55 55
Equus_caballus_76_2   (Horse)   62 62
Myotis_lucifugus_76_2.0   (Little brown bat)   45 45
Pteropus_vampyrus_76_1   (Large flying fox)   49 48
Sorex_araneus_76_1   (European shrew)   30 27
Erinaceus_europaeus_76   (Western European hedgehog)   32 31
Procavia_capensis_76_1   (Cape rock hyrax)   45 43
Loxodonta_africana_76_3   (African savanna elephant)   64 64
Echinops_telfairi_76   (Small Madagascar hedgehog)   39 38
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   66 66
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   28 27
Macropus_eugenii_76_1.0   (Tammar wallaby)   39 39
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   59 59
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   58 58
Ornithorhynchus_anatinus_76_5   (Platypus)   41 41
Saccoglossus_kowalevskii_v3.0 79 79
Petromyzon_marinus_76_7.0   (Sea lamprey)   25 25
Meleagris_gallopavo_76_2   (Turkey)   51 51
Gallus_gallus_76_4   (Chicken)   46 46
Anas_platyrhynchos_76_1.0   (Mallard)   50 50
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   41 41
Ficedula_albicollis_76_1.0   (Collared flycatcher)   40 40
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   51 51
Anolis_carolinensis_76_2.0   (Green anole)   49 49
Xenopus_laevis_   (African clawed frog)   123 123
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   67 67
Latimeria_chalumnae_76_1   (Coelacanth)   60 60
Lepisosteus_oculatus_76   (Spotted gar)   63 63
Gadus_morhua_76_1   (Atlantic cod)   59 59
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   83 83
Takifugu_rubripes_76_4   (Torafugu)   228 228
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   84 84
Oryzias_latipes_76_1   (Japanese medaka)   71 71
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   63 63
Poecilia_formosa_76   (Amazon molly)   67 67
Oreochromis_niloticus_76_1.0   (Nile tilapia)   91 91
Astyanax_mexicanus_76   (Mexican tetra)   64 64
Danio_rerio_76_9   (Zebrafish)   121 121
Oikopleura_dioica 29 29
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   60 59
Ciona_intestinalis_76   (Vase tunicate)   31 31
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   50 46
Adineta_vaga 72 72
Octopus_bimaculoides_280 65 65
Crassostrea_gigas_22   (Pacific oyster)   38 38
Lottia_gigantea_   (Owl limpet)   33 33
Helobdella_robusta_ 24 23
Capitella_sp._I_ 37 37
Danaus_plexippus_OGS1.0   (Monarch butterfly)   23 23
Heliconius_melpomene_   (Postman butterfly)   22 22
Bombyx_mori_   (Domestic silkworm)   21 21
Nasonia_vitripennis_   (Jewel wasp)   18 18
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   33 33
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   23 23
Linepithema_humile_v1.1   (Argentine ant)   26 26
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   27 27
Solenopsis_invicta_v.2.2.3   (Red fire ant)   23 22
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   25 25
Atta_cephalotes_v1.1 22 22
Camponotus_floridanus_v3.3   (Florida carpenter ant)   23 23
Lucilia_cuprina   (Australian sheep blowfly)   25 25
Drosophila_grimshawi_1.3 24 24
Drosophila_willistoni_1.3 25 25
Drosophila_pseudoobscura_2.13 28 28
Drosophila_persimilis_1.3 27 27
Drosophila_suzukii 26 25
Drosophila_yakuba_1.3 26 26
Drosophila_simulans_1.3 25 25
Drosophila_sechellia_1.3 24 24
Drosophila_melanogaster_76_5   (Fruit fly)   60 60
Drosophila_erecta_1.3 25 25
Drosophila_ananassae_1.3 26 26
Drosophila_virilis_1.2 25 25
Drosophila_mojavensis_1.3 23 23
Megaselia_scalaris_22 15 15
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   27 27
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   28 28
Anopheles_darlingi_22   (American malaria mosquito)   21 20
Anopheles_gambiae_49_3j   (African malaria mosquito)   24 24
Tribolium_castaneum_3.0   (Red flour beetle)   25 25
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   26 26
Acyrthosiphon_pisum_   (Pea aphid)   27 27
Rhodnius_prolixus_22 19 19
Daphnia_pulex_   (Common water flea)   30 30
Strigamia_maritima_22 30 30
Sarcoptes_scabiei 19 19
Tetranychus_urticae_   (Two-spotted spider mite)   21 21
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   19 19
Pristionchus_pacificus_ 22 21
Meloidogyne_incognita_   (Southern root-knot nematode)   22 22
Meloidogyne_hapla_ 9 9
Onchocerca_volvulus_22 21 21
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   27 27
Caenorhabditis_japonica_ 19 19
Caenorhabditis_brenneri_ 25 24
Caenorhabditis_remanei_ 23 23
Caenorhabditis_elegans_76_235   (Roundworm)   40 40
Caenorhabditis_briggsae_2 20 20
Trichinella_spiralis_22 15 15
Hymenolepis_microstoma_ 31 31
Echinococcus_multilocularis_ 23 23
Echinococcus_granulosus_ 23 23
Taenia_solium_   (Pork tapeworm)   21 21
Schistosoma_mansoni_ 29 29
Mnemiopsis_leidyi   (Sea walnut)   27 27
Thelohanellus_kitauei 6 6
Acropora_digitifera_v1.0 35 35
Nematostella_vectensis_1.0   (Starlet sea anemone)   35 33
Hydra_vulgaris 28 28
Amphimedon_queenslandica 30 30
Trichoplax_adhaerens_ 25 25
Proterospongia_sp._ATCC_50818_ 27 27
Monosiga_brevicollis_ 16 16
Sphaeroforma_arctica_JP610_ 9 9
Capsaspora_owczarzaki_ATCC_30864_ 18 18
Conidiobolus_coronatus_NRRL28638_v1.0 6 6
Mortierella_verticillata_NRRL_6337_ 19 18
Phycomyces_blakesleeanus_ 22 22
Rhizopus_oryzae_RA_99-880_ 24 24
Mucor_circinelloides_ 19 19
Rhizomucor_miehei_CAU432_ 20 20
Malassezia_globosa_CBS_7966_ 8 8
Sporisorium_reilianum_22 7 7
Ustilago_maydis_ 6 6
Mixia_osmundae_IAM_14324_v1.0 11 11
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 10 10
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 7 7
Melampsora_laricis-populina_ 8 8
Rhodotorula_graminis_WP1_v1.0 8 8
Sporobolomyces_roseus_IAM_13481_ 7 7
Microbotryum_violaceum_22 10 10
Wallemia_sebi_v1.0 8 8
Sphaerobolus_stellatus_v1.0 15 15
Piloderma_croceum_F_1598_v1.0 16 16
Serpula_lacrymans_var._lacrymans_S7.9_ 10 10
Coniophora_puteana 27 27
Hydnomerulius_pinastri_v2.0 11 11
Paxillus_rubicundulus_Ve08.2h10_v1.0 11 11
Pisolithus_microcarpus_441_v1.0 10 10
Pisolithus_tinctorius_Marx_270_v1.0 10 10
Scleroderma_citrinum_Foug_A_v1.0 14 14
Coprinopsis_cinerea_okayama7_130_v3 10 10
Pleurotus_ostreatus_   (Oyster mushroom)   13 13
Amanita_thiersii_Skay4041_v1.0 10 10
Amanita_muscaria_Koide_v1.0   (Fly agaric)   15 15
Galerina_marginata_v1.0 15 15
Hebeloma_cylindrosporum_h7_v2.0 11 11
Laccaria_bicolor_S238N-H82_ 13 13
Agaricus_bisporus_var._bisporus_ 8 8
Schizophyllum_commune_ 11 11
Stereum_hirsutum_FP-91666_SS1__v1.0 12 12
Heterobasidion_annosum_ 11 11
Gloeophyllum_trabeumv1.0 11 11
Punctularia_strigosozonata_v1.0 11 11
Sebacina_vermifera_MAFF_305830_v1.0 17 17
Fomitiporia_mediterranea_v1.0 10 10
Tulasnella_calospora_AL13/4D_v1.0 13 13
Postia_placenta_ 17 17
Wolfiporia_cocos_MD-104_SS10__v1.0 10 10
Fomitopsis_pinicolav1.0 10 10
Fomitopsis_pinicola_FP-58527_SS1_v3.0 10 10
Phanerochaete_chrysosporium_RP-78_2.1 12 12
Dichomitus_squalens 13 13
Trametes_versicolor_v1.0 15 15
Tremella_mesenterica_   (Witches' butter)   9 9
Daldinia_eschscholzii_EC12_v1.0 11 11
Apiospora_montagnei_NRRL_25634_v1.0 12 12
Magnaporthe_poae_ATCC_64411_22 8 8
Magnaporthe_grisea_70-15_ 12 12
Podospora_anserina_ 9 9
Sporotrichum_thermophile_ATCC_42464_ 12 12
Thielavia_terrestris_NRRL_8126_ 12 12
Chaetomium_globosum_CBS_148.51_ 11 11
Neurospora_tetrasperma_ 9 9
Neurospora_discreta_FGSC_8579_ 11 11
Neurospora_crassa_OR74A_ 10 10
Cryphonectria_parasitica_   (Chestnut blight fungus)   10 10
Verticillium_albo-atrum_VaMs.102_ 12 12
Verticillium_dahliae_VdLs.17_ 12 12
Acremonium_alcalophilumv_1.0 10 10
Glomerella_graminicola_22 11 11
Fusarium_graminearum_ 10 10
Nectria_haematococca_mpVI_ 14 14
Fusarium_oxysporum_f._sp._lycopersici_4286_ 9 9
Fusarium_verticillioides_7600_ 9 9
Trichoderma_asperellum_CBS_433.97_v1.0 12 12
Trichoderma_atroviride_ 12 12
Trichoderma_citrinoviride_v1.0 12 12
Trichoderma_reesei_1.2 12 12
Trichoderma_virens_Gv29-8_ 13 13
Trichoderma_longibrachiatum_ATCC_18648_v1.0 12 12
Trichoderma_harzianum_CBS_226.95_v1.0 12 12
Amorphotheca_resinae_v1.0   (Creosote fungus)   12 12
Botrytis_cinerea_B05.10_ 10 10
Sclerotinia_sclerotiorum_ 8 8
Blumeria_graminis_22 8 8
Didymella_exigua_CBS_183.55_v1.0 11 11
Leptosphaeria_maculans_22 10 10
Setosphaeria_turcica_v1.0 10 10
Cochliobolus_miyabeanus_ATCC_44560_v1.0 10 10
Cochliobolus_victoriae_FI3_v1.0 10 10
Cochliobolus_carbonum_26-R-13_v1.0 10 10
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   9 9
Alternaria_brassicicola_ 8 8
Cochliobolus_lunatus_m118_v2.0 11 11
Pyrenophora_teres_f._teres_22 11 11
Pyrenophora_tritici-repentis_ 11 11
Stagonospora_nodorum_ 11 11
Mycosphaerella_graminicola_IPO323_ 10 10
Zasmidium_cellare_ATCC_36951_v1.0 11 11
Dothistroma_septosporum 10 9
Septoria_musiva_v1.0 11 10
Mycosphaerella_fijiensis_CIRAD86_ 9 9
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 11 11
Paracoccidioides_brasiliensis_Pb18_ 9 9
Coccidioides_posadasii_RMSCC_3488_ 12 12
Coccidioides_immitis_RS_ 12 12
Ajellomyces_dermatitidis_SLH14081_ 14 14
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 12 12
Microsporum_canis_CBS_113480_ 12 12
Trichophyton_equinum_CBS_127.97_ 9 9
Trichophyton_verrucosum_HKI_0517_ 12 12
Arthroderma_benhamiae_CBS_112371_ 12 12
Trichophyton_tonsurans_CBS_112818_ 11 11
Trichophyton_rubrum_CBS_118892_ 12 12
Uncinocarpus_reesii_1704_ 11 11
Aspergillus_zonatus_v1.0 11 11
Penicillium_chrysogenum_Wisconsin_54-1255_ 10 10
Penicillium_chrysogenum_v1.0 10 10
Aspergillus_acidus_v1.0 11 11
Aspergillus_fumigatus_Af293 8 8
Aspergillus_brasiliensis_v1.0 11 11
Aspergillus_nidulans_FGSC_A4_ 10 10
Aspergillus_sydowii_v1.0 10 10
Aspergillus_versicolor_v1.0 11 11
Aspergillus_glaucus 11 11
Aspergillus_carbonarius_ITEM_5010_ 10 10
Neosartorya_fischeri_NRRL_181_ 11 11
Aspergillus_terreus_NIH2624_ 9 9
Aspergillus_tubingensis_v1.0 11 11
Aspergillus_wentii_v1.0 11 11
Aspergillus_oryzae_RIB40_ 10 10
Aspergillus_niger_22 10 10
Aspergillus_niger_ATCC_1015_ 5 5
Aspergillus_flavus_NRRL3357_ 9 9
Aspergillus_clavatus_NRRL_1_ 11 11
Penicillium_marneffei_ATCC_18224_ 11 11
Tuber_melanosporum_Mel28_22 12 11
Tuber_melanosporum_Vittad_   (Perigord truffle)   13 12
Hansenula_polymorpha_v2.0 10 9
Dekkera_bruxellensis_CBS_2499_v2.0 10 9
Pichia_membranifaciensv1.0 11 10
Candida_tanzawaensis_NRRL_Y-17324__v1.0 10 9
Candida_dubliniensis_CD36_ 11 10
Candida_tropicalis_MYA-3404_ 10 9
Candida_parapsilosis_ 9 8
Candida_albicans_SC5314 9 8
Lodderomyces_elongisporus_NRRL_YB-4239_ 9 9
Babjeviella_inositovora_NRRL_Y-12698_v1.0 11 10
Pichia_stipitis_CBS_6054_ 9 8
Candida_guilliermondii_ATCC_6260_ 8 7
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 9 8
Debaromyces_hansenii 11 10
Wickerhamomyces_anomalus 11 10
Pichia_pastoris_GS115_ 10 9
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 9 8
Yarrowia_lipolytica_CLIB122 9 8
Candida_lusitaniae_ATCC_42720_ 9 8
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 9 8
Vanderwaltozyma_polyspora_DSM_70294_ 14 13
Candida_glabrata_CBS138 13 12
Kluyveromyces_thermotolerans_CBS_6340 11 10
Lachancea_kluyveri_ 11 10
Kluyveromyces_waltii 10 9
Ashbya_gossypii_ATCC_10895_ 12 11
Zygosaccharomyces_rouxii_ 11 10
Saccharomyces_mikatae_MIT 13 12
Saccharomyces_paradoxus_MIT 16 15
Saccharomyces_cerevisiae_76   (Baker's yeast)   16 15
Saccharomyces_bayanus_MIT 13 12
Kluyveromyces_lactis 11 10
Schizosaccharomyces_cryophilus_OY26_22 8 8
Schizosaccharomyces_octosporus_yFS286_ 8 8
Schizosaccharomyces_japonicus_yFS275_ 8 8
Schizosaccharomyces_pombe   (Fission yeast)   8 8
Catenaria_anguillulae_PL171_v1.0 12 12
Allomyces_macrogynus_ATCC_38327_ 23 22
Spizellomyces_punctatus_DAOM_BR117_ 20 19
Dictyostelium_discoideum 26 25
Dictyostelium_purpureum_ 22 22
Entamoeba_dispar_1.2 23 23
Entamoeba_invadens_1.2 22 22
Entamoeba_histolytica_1 24 24
Selaginella_moellendorffii_ 19 19
Pinus_taeda   (Loblolly pine)   9 9
Picea_abies   (Norway spruce)   6 6
Eucalyptus_grandis_v201   (Rose gum)   26 26
Theobroma_cacao_B97-61/B2_v1   (Cacao)   19 19
Gossypium_raimondii_v221 64 64
Citrus_clementina_v165 27 27
Citrus_sinensis_v154   (Sweet orange)   59 59
Thellungiella_halophila_v173 26 26
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   31 31
Capsella_rubella_v183 21 21
Arabidopsis_lyrata_   (Lyrate rockcress)   25 25
Arabidopsis_thaliana_10   (Thale cress)   28 28
Carica_papaya_   (Papaya)   14 14
Medicago_truncatula_   (Barrel medic)   44 44
Phaseolus_vulgaris_v186   (French bean)   24 24
Glycine_max_v109   (Soybean)   42 42
Cucumis_sativus_v122   (Cucumber)   33 33
Fragaria_vesca_   (Wild strawberry)   18 18
Malus_domestica_v196   (Apple)   35 35
Prunus_persica_v139   (Peach)   18 18
Linum_usitatissimum_v200   (Flax)   33 33
Manihot_esculenta_v147   (Cassava)   29 29
Populus_trichocarpa_v156   (Black cottonwood)   33 33
Vitis_vinifera_   (Wine grape)   17 17
Mimulus_guttatus_v140   (Spotted monkey flower)   21 21
Solanum_lycopersicum_v.2.3   (Tomato)   20 20
Solanum_tuberosum_   (Potato)   22 22
Actinidia_chinensis_Hongyang_ 17 17
Aquilegia_coerulea_v195 39 39
Triticum_urartu_22 14 14
Triticum_aestivum_22   (Bread wheat)   45 45
Aegilops_tauschii_22 15 15
Brachypodium_distachyon_   (Stiff brome)   27 27
Oryza_barthii_22   (African wild rice)   24 24
Oryza_meridionalis_22 22 22
Oryza_glumaepatula_22 27 27
Oryza_glaberrima   (African rice)   18 18
Oryza_punctata_22 24 24
Oryza_nivara_22 35 35
Oryza_brachyantha_22   (Malo sina)   18 18
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   28 28
Oryza_sativa_v193   (Rice)   28 28
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   24 24
Panicum_virgatum_v202   (Switchgrass)   46 46
Setaria_italica_v164   (Foxtail millet)   25 25
Zea_mays_subsp._mays_   (Maize)   25 25
Zea_mays_v181   (Maize)   29 29
Sorghum_bicolor_   (Sorghum)   19 19
Musa_balbisiana   (Balbis banana)   20 20
Musa_acuminata_22   (Wild Malaysian banana)   21 21
Amborella_trichopoda_22 15 15
Physcomitrella_patens 18 18
Coccomyxa_subellipsoidea_sp._C-169_v2 14 14
Asterochloris_sp._Cgr/DA1pho_v1.0 8 8
Chlorella_variabilis_sp._NC64A_ 15 15
Chlorella_vulgaris_ 10 10
Volvox_carteri_f._nagariensis_ 13 13
Volvox_carteri_v199 17 17
Chlamydomonas_reinhardtii_4.0 15 15
Ostreococcus_sp._RCC809_ 11 11
Ostreococcus_lucimarinus_CCE9901_ 11 11
Ostreococcus_tauri_ 10 9
Bathycoccus_prasinos_ 11 11
Micromonas_sp._RCC299_ 14 13
Micromonas_pusilla_CCMP1545_v3.0 18 17
Cyanidioschyzon_merolae_strain_10D_22 3 3
Cyanidioschyzon_merolae 3 3
Porphyridium_purpureum_02_2012 3 3
Thecamonas_trahens_ATCC_50062_ 41 39
Bigelowiella_natans_CCMP2755_22 55 50
Giardia_lamblia_2.3 3 3
Cyanophora_paradoxa_ 16 16
Leishmania_mexicana_2.4 13 13
Leishmania_major_strain_Friedlin_ 12 12
Leishmania_infantum_JPCM5_2.4 11 11
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 12 12
Trypanosoma_vivax_ 14 14
Trypanosoma_cruzi_strain_CL_Brener 12 12
Trypanosoma_congolense_2.4 13 13
Trypanosoma_brucei_gambiense_v4.1 13 13
Trypanosoma_brucei_TREU927_v4.1 12 12
Ectocarpus_siliculosus 24 21
Aureococcus_anophagefferens_ 14 14
Albugo_laibachii_22 31 26
Pythium_iwayamai_DAOM_BR242034_22 23 20
Pythium_arrhenomanes_ATCC_12531_22 21 17
Pythium_ultimum_v1.7-2 26 22
Pythium_aphanidermatum_DAOM_BR444_22 21 20
Pythium_irregulare_DAOM_BR486_22 28 24
Pythium_vexans_DAOM_BR484_22 25 21
Phytophthora_ramorum_1.1   (Sudden oak death agent)   24 21
Phytophthora_sojae_1.1 23 21
Phytophthora_infestans_T30-4_ 25 21
Phytophthora_capsici_ 20 19
Hyaloperonospora_arabidopsidis_22 16 15
Phaeodactylum_tricornutumCCAP_1055/1 8 8
Fragilariopsis_cylindrus 16 16
Thalassiosira_pseudonana_CCMP1335 7 7
Perkinsus_marinus_ATCC_50983_ 32 30
Paramecium_tetraurelia_ 131 102
Tetrahymena_thermophila_SB210_1_ 56 44
Ichthyophthirius_multifiliis_strain_G5_ 29 23
Cryptosporidium_hominis 7 6
Cryptosporidium_muris 8 7
Cryptosporidium_parvum_Iowa_II 8 7
Neospora_caninum 14 13
Toxoplasma_gondii_VEG 11 10
Toxoplasma_gondii_ME49 12 11
Toxoplasma_gondii_GT1 9 8
Babesia_bovis_T2Bo_ 14 12
Theileria_parva__ 7 6
Theileria_annulata 7 6
Plasmodium_falciparum_3D7_ 6 5
Plasmodium_vivax_SaI-1_7.0 6 5
Plasmodium_knowlesi_strain_H_ 6 5
Plasmodium_yoelii_ssp._yoelii_1_ 6 5
Plasmodium_chabaudi_ 6 5
Plasmodium_berghei_ANKA_ 6 5
Symbiodinium_minutum_clade_B1_v1.2 117 104
Naegleria_gruberi_ 12 12
Trichomonas_vaginalis_ 15 15
Guillardia_theta_CCMP2712_v1.0_ 44 42
Emiliania_huxleyi_CCMP1516_ 102 100
Thermobaculum_terrenum_ATCC_BAA-798 2 2
Leptolyngbya_sp._PCC_7376 13 12
Pseudanabaena_sp._PCC_7367 15 14
Acaryochloris_marina_MBIC11017 39 34
Synechocystis_sp._PCC_6803 11 10
Thermosynechococcus_sp._NK55 20 16
Thermosynechococcus_elongatus_BP-1 22 18
Synechococcus_sp._PCC_7502 7 7
Synechococcus_sp._PCC_6312 19 16
Synechococcus_sp._CC9311 1 1
Synechococcus_elongatus_PCC_7942 2 2
Microcoleus_sp._PCC_7113 23 22
Trichodesmium_erythraeum_IMS101 14 13
Geitlerinema_sp._PCC_7407 13 13
Cyanothece_sp._PCC_8802 13 12
Gloeocapsa_sp._PCC_7428 6 6
Halothece_sp._PCC_7418 7 7
Microcystis_aeruginosa_NIES-843 9 8
Gloeobacter_violaceus_PCC_7421 6 6
Rivularia_sp._PCC_7116 16 15
Calothrix_sp._PCC_7507 13 13
Anabaena_variabilis_ATCC_29413 13 13
'Nostoc_azollae'_0708 6 6
Nostoc_sp._PCC_7107 12 12
Nostoc_punctiforme_PCC_73102 13 13
Nostoc_sp._PCC_7120 13 13
Nostoc_sp._PCC_7524 14 14
Anabaena_sp._90 9 9
Conexibacter_woesei_DSM_14684 5 5
Cryptobacterium_curtum_DSM_15641 3 3
Eggerthella_sp._YY7918 3 3
Eggerthella_lenta_DSM_2243 3 3
Slackia_heliotrinireducens_DSM_20476 7 7
Olsenella_uli_DSM_7084 6 6
Atopobium_parvulum_DSM_20469 3 3
Coriobacterium_glomerans_PW2 3 3
Rubrobacter_xylanophilus_DSM_9941 3 3
Ilumatobacter_coccineus 7 7
Acidimicrobium_ferrooxidans_DSM_10331 3 3
Thermobispora_bispora_DSM_43833 6 6
Nakamurella_multipartita_DSM_44233 8 8
Acidothermus_cellulolyticus_11B 4 4
Modestobacter_marinus 5 5
Blastococcus_saxobsidens_DD2 5 5
Geodermatophilus_obscurus_DSM_43160 5 5
Kineococcus_radiotolerans_SRS30216 4 4
Catenulispora_acidiphila_DSM_44928 13 11
Stackebrandtia_nassauensis_DSM_44728 6 6
Frankia_symbiont_of_Datisca_glomerata 10 8
Frankia_sp._EAN1pec 20 16
Frankia_alni_ACN14a 15 12
Thermobifida_fusca_YX 4 4
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 5 5
Thermomonospora_curvata_DSM_43183 7 7
Streptosporangium_roseum_DSM_43021 7 7
Kitasatospora_setae_KM-6054 11 9
Streptomyces_coelicolor_A3(2) 10 9
Streptomyces_sp._PAMC26508 9 8
Streptomyces_flavogriseus_ATCC_33331 9 8
Streptomyces_sp._SirexAA-E 8 7
Streptomyces_griseus_subsp._griseus_NBRC_13350 8 7
Streptomyces_bingchenggensis_BCW-1 14 12
Streptomyces_violaceusniger_Tu_4113 11 9
Streptomyces_avermitilis_MA-4680 12 10
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 10 9
Streptomyces_scabiei_87.22 13 11
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 11 10
Actinosynnema_mirum_DSM_43827 4 4
Saccharomonospora_viridis_DSM_43017 3 3
Pseudonocardia_dioxanivorans_CB1190 3 3
Saccharopolyspora_erythraea_NRRL_2338 4 4
Amycolatopsis_mediterranei_U32 4 4
Kribbella_flavida_DSM_17836 5 5
Nocardioides_sp._JS614 5 5
Propionibacterium_propionicum_F0230a 6 6
Propionibacterium_acnes_SK137 4 4
Microlunatus_phosphovorus_NM-1 9 8
Propionibacterium_freudenreichii_subsp._shermanii_CIRM-BIA1 4 4
Salinispora_arenicola_CNS-205 4 4
Salinispora_tropica_CNB-440 4 4
Verrucosispora_maris_AB-18-032 5 5
Micromonospora_sp._L5 5 5
Micromonospora_aurantiaca_ATCC_27029 5 5
Actinoplanes_sp._N902-109 5 5
Actinoplanes_sp._SE50/110 5 5
Actinoplanes_missouriensis_431 6 6
Segniliparus_rotundus_DSM_44985 3 3
Tsukamurella_paurometabola_DSM_20162 8 7
Gordonia_sp._KTR9 6 5
Gordonia_polyisoprenivorans_VH2 6 5
Gordonia_bronchialis_DSM_43247 6 5
Rhodococcus_jostii_RHA1 14 12
Rhodococcus_equi_103S 6 5
Rhodococcus_opacus_B4 8 7
Rhodococcus_erythropolis_PR4 3 3
Nocardia_cyriacigeorgica_GUH-2 9 8
Nocardia_farcinica_IFM_10152 9 8
Amycolicicoccus_subflavus_DQS3-9A1 4 4
Mycobacterium_massiliense_str._GO_06 3 2
Mycobacterium_abscessus_ATCC_19977 5 4
Mycobacterium_sp._JLS 8 7
Mycobacterium_intracellulare_ATCC_13950 14 9
Mycobacterium_avium_104 13 9
Mycobacterium_vanbaalenii_PYR-1 6 5
Mycobacterium_canettii_CIPT_140010059 11 9
Mycobacterium_africanum_GM041182 11 9
Mycobacterium_tuberculosis_KZN_1435 8 7
Mycobacterium_tuberculosis 9 8
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 9 8
Mycobacterium_rhodesiae_NBB3 17 14
Mycobacterium_ulcerans_Agy99 10 8
Mycobacterium_gilvum_PYR-GCK 5 4
Mycobacterium_chubuense_NBB4 8 7
Mycobacterium_marinum_M 15 11
Mycobacterium_smegmatis_str._MC2_155 5 4
Mycobacterium_leprae_Br4923 3 3
Corynebacterium_resistens_DSM_45100 3 3
Corynebacterium_aurimucosum_ATCC_700975 3 3
Corynebacterium_kroppenstedtii_DSM_44385 3 3
Corynebacterium_efficiens_YS-314 4 4
Corynebacterium_ulcerans_0102 3 3
Corynebacterium_urealyticum_DSM_7109 3 3
Corynebacterium_jeikeium_K411 3 3
Corynebacterium_variabile_DSM_44702 3 3
Corynebacterium_pseudotuberculosis_316 3 3
Corynebacterium_glutamicum_R 3 3
Corynebacterium_diphtheriae_NCTC_13129 3 3
Tropheryma_whipplei_TW08/27 3 3
Sanguibacter_keddieii_DSM_10542 7 7
Kytococcus_sedentarius_DSM_20547 3 3
Beutenbergia_cavernae_DSM_12333 7 7
Leifsonia_xyli_subsp._xyli_str._CTCB07 8 8
Microbacterium_testaceum_StLB037 7 7
Clavibacter_michiganensis_subsp._michiganensis_NCPPB_382 4 4
Jonesia_denitrificans_DSM_20603 6 6
Intrasporangium_calvum_DSM_43043 5 5
Brachybacterium_faecium_DSM_4810 6 6
Isoptericola_variabilis_225 6 6
Xylanimonas_cellulosilytica_DSM_15894 7 7
Cellulomonas_flavigena_DSM_20109 9 9
Cellulomonas_fimi_ATCC_484 7 7
[Cellvibrio]_gilvus_ATCC_13127 8 8
Arthrobacter_phenanthrenivorans_Sphe3 8 8
Arthrobacter_chlorophenolicus_A6 8 8
Arthrobacter_aurescens_TC1 8 8
Arthrobacter_arilaitensis_Re117 6 6
Kocuria_rhizophila_DC2201 3 3
Rothia_mucilaginosa_DY-18 3 3
Rothia_dentocariosa_ATCC_17931 3 3
Arthrobacter_sp._Rue61a 7 7
Arthrobacter_sp._FB24 10 10
Renibacterium_salmoninarum_ATCC_33209 3 3
Micrococcus_luteus_NCTC_2665 3 3
Gardnerella_vaginalis_409-05 4 4
Bifidobacterium_longum_subsp._longum_JDM301 8 7
Bifidobacterium_animalis_subsp._lactis_Bl-04 5 5
Bifidobacterium_dentium_Bd1 6 6
Bifidobacterium_breve_ACS-071-V-Sch8b 4 4
Bifidobacterium_bifidum_S17 5 5
Bifidobacterium_adolescentis_ATCC_15703 5 5
Arcanobacterium_haemolyticum_DSM_20595 3 3
Mobiluncus_curtisii_ATCC_43063 4 4
Actinomyces_sp._F0330 11 10
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 3 3
Anaerolinea_thermophila_UNI-1 7 7
Thermomicrobium_roseum_DSM_5159 3 3
Sphaerobacter_thermophilus_DSM_20745 3 3
Herpetosiphon_aurantiacus_DSM_785 14 13
Roseiflexus_sp._RS-1 29 28
Roseiflexus_castenholzii_DSM_13941 25 24
Chloroflexus_sp._MS-G 12 11
Chloroflexus_sp._Y-400-fl 13 12
Chloroflexus_aggregans_DSM_9485 13 12
Chloroflexus_aurantiacus_J-10-fl 13 12
Deinococcus_gobiensis_I-0 2 2
Deinococcus_deserti_VCD115 2 2
Deinococcus_maricopensis_DSM_21211 2 2
Deinococcus_radiodurans_R1 1 1
Meiothermus_silvanus_DSM_9946 1 1
Anaerococcus_prevotii_DSM_20548 1 1
Finegoldia_magna_ATCC_29328 1 1
Megamonas_hypermegale 1 1
Selenomonas_sputigena_ATCC_35185 2 2
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 4 4
Clostridiales_genomosp._BVAB3_str._UPII9-5 1 1
Clostridium_clariflavum_DSM_19732 3 3
Clostridium_cellulolyticum_H10 2 2
Clostridium_thermocellum_ATCC_27405 4 3
Oscillibacter_valericigenes_Sjm18-20 3 3
butyrate-producing_bacterium_SS3/4 1 1
Thermincola_potens_JR 4 4
Pelotomaculum_thermopropionicum_SI 2 2
Desulfosporosinus_acidiphilus_SJ4 2 2
Desulfosporosinus_orientis_DSM_765 2 2
Dehalobacter_sp._DCA 2 2
Dehalobacter_sp._CF 2 2
Syntrophobotulus_glycolicus_DSM_8271 2 2
Desulfitobacterium_hafniense_Y51 2 2
Desulfitobacterium_dehalogenans_ATCC_51507 2 2
Desulfotomaculum_reducens_MI-1 2 2
Desulfotomaculum_acetoxidans_DSM_771 2 2
Desulfotomaculum_kuznetsovii_DSM_6115 2 2
Desulfotomaculum_carboxydivorans_CO-1-SRB 2 2
Desulfotomaculum_ruminis_DSM_2154 2 2
Eubacterium_eligens_ATCC_27750 1 1
Eubacterium_limosum_KIST612 1 1
Clostridium_saccharolyticum_WM1 1 1
Clostridium_phytofermentans_ISDg 1 1
Clostridium_lentocellum_DSM_5427 1 1
[Ruminococcus]_obeum 1 1
[Ruminococcus]_torques 1 1
Eubacterium_rectale_M104/1 2 2
Eubacterium_rectale_ATCC_33656 4 4
Coprococcus_sp._ART55/1 5 5
Roseburia_hominis_A2-183 1 1
Roseburia_intestinalis 1 1
Butyrivibrio_proteoclasticus_B316 1 1
Butyrivibrio_fibrisolvens 3 3
Syntrophothermus_lipocalidus_DSM_12680 2 2
Heliobacterium_modesticaldum_Ice1 1 1
Alkaliphilus_oremlandii_OhILAs 1 1
Alkaliphilus_metalliredigens_QYMF 1 1
Clostridium_sp._BNL1100 2 2
Clostridium_novyi_NT 1 1
Clostridium_ljungdahlii_DSM_13528 1 1
Clostridium_kluyveri_DSM_555 1 1
Clostridium_beijerinckii_NCIMB_8052 3 3
Clostridium_tetani_E88 1 1
Clostridium_perfringens_ATCC_13124 1 1
Clostridium_cellulovorans_743B 1 1
Clostridium_botulinum_A_str._ATCC_3502 1 1
Clostridium_acetobutylicum_ATCC_824 5 5
Mahella_australiensis_50-1_BON 1 1
Thermosediminibacter_oceani_DSM_16646 1 1
Caldicellulosiruptor_obsidiansis_OB47 1 1
Caldicellulosiruptor_kronotskyensis_2002 1 1
Caldicellulosiruptor_bescii_DSM_6725 1 1
Thermoanaerobacterium_xylanolyticum_LX-11 1 1
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 1 1
Tepidanaerobacter_acetatoxydans_Re1 1 1
Thermoanaerobacter_tengcongensis_MB4 1 1
Moorella_thermoacetica_ATCC_39073 2 2
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 1 1
Thermoanaerobacter_pseudethanolicus_ATCC_33223 1 1
Thermoanaerobacter_sp._X514 1 1
Thermoanaerobacter_italicus_Ab9 1 1
Thermoanaerobacter_wiegelii_Rt8.B1 1 1
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 1 1
Brevibacillus_brevis_NBRC_100599 4 4
Paenibacillus_sp._JDR-2 2 2
Paenibacillus_terrae_HPL-003 4 4
Paenibacillus_mucilaginosus_3016 2 2
Paenibacillus_polymyxa_M1 3 3
Lysinibacillus_sphaericus_C3-41 2 2
Bacillus_sp._1NLA3E 2 2
Bacillus_halodurans_C-125 2 2
Bacillus_clausii_KSM-K16 2 2
Bacillus_cellulosilyticus_DSM_2522 2 2
Bacillus_megaterium_DSM_319 1 1
Staphylococcus_lugdunensis_HKU09-01 2 1
Staphylococcus_aureus_subsp._aureus_JH1 2 1
Staphylococcus_aureus 2 1
Gemmatimonas_aurantiaca_T-27 2 2
Pelodictyon_phaeoclathratiforme_BU-1 3 2
Niastella_koreensis_GR20-10 2 2
Fibrella_aestuarina 5 5
Spirosoma_linguale_DSM_74 4 4
Runella_slithyformis_DSM_19594 2 2
Parabacteroides_distasonis_ATCC_8503 3 3
Tannerella_forsythia_ATCC_43037 2 2
Prevotella_melaninogenica_ATCC_25845 1 1
Prevotella_intermedia_17 1 1
Prevotella_denticola_F0289 1 1
Prevotella_ruminicola_23 2 2
Porphyromonas_asaccharolytica_DSM_20707 1 1
Porphyromonas_gingivalis_ATCC_33277 1 1
Bacteroides_salanitronis_DSM_18170 5 4
Bacteroides_helcogenes_P_36-108 1 1
Bacteroides_vulgatus_ATCC_8482 1 1
Bacteroides_thetaiotaomicron_VPI-5482 6 5
Bacteroides_fragilis_YCH46 1 1
Pedobacter_heparinus_DSM_2366 1 1
Aequorivita_sublithincola_DSM_14238 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 2 2
Waddlia_chondrophila_WSU_86-1044 3 2
Candidatus_Protochlamydia_amoebophila_UWE25 3 2
Parachlamydia_acanthamoebae_UV-7 3 2
Simkania_negevensis_Z 2 1
Chlamydophila_pecorum_E58 2 1
Chlamydia_muridarum_Nigg 2 1
Chlamydophila_pneumoniae_TW-183 2 1
Chlamydophila_caviae_GPIC 2 1
Chlamydophila_felis_Fe/C-56 2 1
Chlamydophila_abortus_S26/3 2 1
Chlamydia_psittaci_01DC11 2 1
Chlamydia_trachomatis_B/Jali20/OT 2 1
Phycisphaera_mikurensis_NBRC_102666 5 5
Isosphaera_pallida_ATCC_43644 21 21
Planctomyces_brasiliensis_DSM_5305 19 19
Planctomyces_limnophilus_DSM_3776 18 18
Rhodopirellula_baltica_SH_1 12 12
Pirellula_staleyi_DSM_6068 18 18
Coraliomargarita_akajimensis_DSM_45221 2 2
Akkermansia_muciniphila_ATCC_BAA-835 1 1
Turneriella_parva_DSM_21527 1 1
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 1 1
Leptospira_interrogans_serovar_Lai_str._IPAV 1 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1 1
Spirochaeta_smaragdinae_DSM_11293 1 1
Treponema_brennaborense_DSM_12168 1 1
Treponema_succinifaciens_DSM_2489 2 2
Spirochaeta_africana_DSM_8902 2 2
Spirochaeta_thermophila_DSM_6192 3 3
Dictyoglomus_turgidum_DSM_6724 1 1
Dictyoglomus_thermophilum_H-6-12 1 1
Candidatus_Chloracidobacterium_thermophilum_B 23 19
Candidatus_Solibacter_usitatus_Ellin6076 10 9
Granulicella_tundricola_MP5ACTX9 1 1
Granulicella_mallensis_MP5ACTX8 4 4
Candidatus_Koribacter_versatilis_Ellin345 3 2
Acidobacterium_capsulatum_ATCC_51196 1 1
Candidatus_Nitrospira_defluvii 5 4
Streptobacillus_moniliformis_DSM_12112 2 2
Sebaldella_termitidis_ATCC_33386 2 2
Leptotrichia_buccalis_C-1013-b 5 5
Candidatus_Saccharimonas_aalborgensis 1 1
Acidithiobacillus_ferrivorans_SS3 1 1
Acidithiobacillus_caldus_SM-1 1 1
Bacteriovorax_marinus_SJ 11 10
Bdellovibrio_bacteriovorus_HD100 9 8
Arcobacter_sp._L 1 1
Arcobacter_nitrofigilis_DSM_7299 1 1
Helicobacter_hepaticus_ATCC_51449 1 1
Helicobacter_cinaedi_PAGU611 1 1
Nitratiruptor_sp._SB155-2 1 1
Desulfobacca_acetoxidans_DSM_11109 2 2
Desulfomonile_tiedjei_DSM_6799 4 3
Syntrophobacter_fumaroxidans_MPOB 4 3
Desulfotalea_psychrophila_LSv54 4 2
Desulfobulbus_propionicus_DSM_2032 3 2
Desulfatibacillum_alkenivorans_AK-01 3 2
Desulfococcus_oleovorans_Hxd3 3 3
Lawsonia_intracellularis_PHE/MN1-00 1 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1 1
Geobacter_lovleyi_SZ 1 1
Haliangium_ochraceum_DSM_14365 64 60
Sorangium_cellulosum_'So_ce_56' 73 66
Anaeromyxobacter_sp._Fw109-5 14 13
Anaeromyxobacter_dehalogenans_2CP-1 17 14
Stigmatella_aurantiaca_DW4/3-1 55 49
Corallococcus_coralloides_DSM_2259 49 43
Myxococcus_xanthus_DK_1622 50 44
Myxococcus_fulvus_HW-1 51 45
Dechloromonas_aromatica_RCB 6 5
Thauera_sp._MZ1T 4 3
Azoarcus_sp._KH32C 7 5
Azoarcus_sp._BH72 6 5
Aromatoleum_aromaticum_EbN1 7 5
Dechlorosoma_suillum_PS 4 3
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 8 6
Methylibium_petroleiphilum_PM1 4 3
Thiomonas_arsenitoxydans 4 4
Thiomonas_intermedia_K12 2 2
Rubrivivax_gelatinosus_IL144 3 2
Leptothrix_cholodnii_SP-6 4 3
Burkholderia_phytofirmans_PsJN 4 3
Burkholderia_phymatum_STM815 3 2
Burkholderia_xenovorans_LB400 4 3
Ralstonia_eutropha_JMP134 3 2
Cupriavidus_taiwanensis_LMG_19424 4 3
Cupriavidus_necator_N-1 3 2
Ralstonia_eutropha_H16 4 3
Burkholderia_sp._RPE64 2 1
Burkholderia_sp._CCGE1002 2 1
Burkholderia_thailandensis_E264 2 2
Burkholderia_pseudomallei_1106a 2 2
Burkholderia_mallei_SAVP1 2 2
Burkholderia_ambifaria_AMMD 2 2
Burkholderia_cenocepacia_HI2424 2 2
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_vietnamiensis_G4 1 1
Burkholderia_gladioli_BSR3 3 3
Verminephrobacter_eiseniae_EF01-2 3 2
Alicycliphilus_denitrificans_K601 3 2
Ramlibacter_tataouinensis_TTB310 4 3
Delftia_sp._Cs1-4 4 3
Delftia_acidovorans_SPH-1 4 3
Polaromonas_sp._JS666 5 3
Polaromonas_naphthalenivorans_CJ2 3 2
Variovorax_paradoxus_S110 5 4
Rhodoferax_ferrireducens_T118 3 2
Acidovorax_ebreus_TPSY 3 2
Acidovorax_sp._KKS102 4 3
Acidovorax_sp._JS42 2 1
Acidovorax_citrulli_AAC00-1 5 4
Acidovorax_avenae_subsp._avenae_ATCC_19860 5 4
Comamonas_testosteroni_CNB-2 2 1
Herminiimonas_arsenicoxydans 2 1
Collimonas_fungivorans_Ter331 4 3
Janthinobacterium_sp._Marseille 2 1
Herbaspirillum_seropedicae_SmR1 1 1
Pusillimonas_sp._T7-7 2 2
Advenella_kashmirensis_WT001 2 2
Taylorella_asinigenitalis_MCE3 1 1
Taylorella_equigenitalis_MCE9 1 1
Bordetella_petrii_DSM_12804 2 2
Bordetella_avium_197N 1 1
Bordetella_parapertussis_12822 2 2
Bordetella_bronchiseptica_RB50 2 2
Achromobacter_xylosoxidans_A8 2 2
Achromobacter_xylosoxidans 1 1
Nitrosomonas_sp._Is79A3 1 1
Sideroxydans_lithotrophicus_ES-1 3 2
Gallionella_capsiferriformans_ES-2 4 3
Methylotenera_versatilis_301 3 2
Methylotenera_mobilis_JLW8 3 2
Methylovorus_sp._MP688 1 1
Methylovorus_glucosetrophus_SIP3-4 1 1
Methylobacillus_flagellatus_KT 2 1
Magnetococcus_marinus_MC-1 2 2
Sphingopyxis_alaskensis_RB2256 1 1
Novosphingobium_sp._PP1Y 2 2
Novosphingobium_aromaticivorans_DSM_12444 1 1
Sphingobium_japonicum_UT26S 1 1
Sphingobium_chlorophenolicum_L-1 1 1
Sphingomonas_sp._MM-1 1 1
Sphingomonas_wittichii_RW1 1 1
Hyphomonas_neptunium_ATCC_15444 1 1
Pseudovibrio_sp._FO-BEG1 3 3
Jannaschia_sp._CCS1 3 3
Ruegeria_pomeroyi_DSS-3 1 1
Roseobacter_litoralis_Och_149 1 1
Rhodobacter_sphaeroides_ATCC_17029 4 4
Paracoccus_denitrificans_PD1222 1 1
Tistrella_mobilis_KA081020-065 1 1
Azospirillum_lipoferum_4B 8 8
Azospirillum_sp._B510 4 4
Azospirillum_brasilense_Sp245 2 2
Acidiphilium_multivorum_AIU301 2 2
Acidiphilium_cryptum_JF-5 2 2
Xanthobacter_autotrophicus_Py2 1 1
Azorhizobium_caulinodans_ORS_571 1 1
Methylobacterium_sp._4-46 1 1
Methylobacterium_nodulans_ORS_2060 2 2
Sinorhizobium_fredii_NGR234 1 1
Rhizobium_etli_CIAT_652 2 2
Rhizobium_leguminosarum_bv._viciae_3841 3 3
Agrobacterium_tumefaciens_str._C58 1 1
Agrobacterium_sp._H13-3 1 1
Agrobacterium_vitis_S4 1 1
Mesorhizobium_sp._BNC1 1 1
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 2 2
Mesorhizobium_loti_MAFF303099 2 2
Methylocella_silvestris_BL2 2 2
Hyphomicrobium_sp._MC1 3 3
Hyphomicrobium_denitrificans_ATCC_51888 2 2
Bradyrhizobium_japonicum_USDA_110 1 1
Bradyrhizobium_sp._ORS_278 1 1
Methylocystis_sp._SC2 1 1
Saccharophagus_degradans_2-40 10 8
Teredinibacter_turnerae_T7901 6 4
Cellvibrio_japonicus_Ueda107 7 5
Tolumonas_auensis_DSM_9187 1 1
Aeromonas_salmonicida_subsp._salmonicida_A449 2 2
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1 1
Aliivibrio_salmonicida_LFI1238 2 2
Vibrio_fischeri_MJ11 2 2
Vibrio_sp._Ex25 3 3
Vibrio_harveyi_ATCC_BAA-1116 2 2
Vibrio_parahaemolyticus_RIMD_2210633 2 2
Vibrio_splendidus_LGP32 2 2
Vibrio_anguillarum_775 2 2
Vibrio_furnissii_NCTC_11218 2 2
Vibrio_vulnificus_MO6-24/O 1 1
Vibrio_cholerae_O395 1 1
Photobacterium_profundum_SS9 1 1
Psychromonas_sp._CNPT3 1 1
Shewanella_loihica_PV-4 1 1
Shewanella_denitrificans_OS217 1 1
Shewanella_woodyi_ATCC_51908 3 3
Shewanella_amazonensis_SB2B 1 1
Shewanella_frigidimarina_NCIMB_400 1 1
Colwellia_psychrerythraea_34H 2 2
Pseudoalteromonas_sp._SM9913 1 1
Pseudoalteromonas_atlantica_T6c 1 1
Glaciecola_sp._4H-3-7+YE-5 1 1
Glaciecola_nitratireducens_FR1064 2 2
Marinobacter_adhaerens_HP15 2 2
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1 1
Marinobacter_aquaeolei_VT8 1 1
Alteromonas_sp._SN2 6 5
Kangiella_koreensis_DSM_16069 3 3
Hahella_chejuensis_KCTC_2396 7 6
Marinomonas_posidonica_IVIA-Po-181 2 2
Marinomonas_sp._MWYL1 1 1
Marinomonas_mediterranea_MMB-1 3 3
Halomonas_elongata_DSM_2581 1 1
Methylomicrobium_alcaliphilum 9 7
Methylomonas_methanica_MC09 12 9
Dichelobacter_nodosus_VCS1703A 1 1
Rhodanobacter_denitrificans 3 3
Frateuria_aurantia_DSM_6220 2 2
Pseudoxanthomonas_spadix_BD-a59 1 1
Pseudoxanthomonas_suwonensis_11-1 2 2
Stenotrophomonas_maltophilia_K279a 1 1
Xylella_fastidiosa_M23 1 1
Xanthomonas_axonopodis_pv._citri_str._306 2 2
Xanthomonas_albilineans_GPE_PC73 1 1
Xanthomonas_oryzae_pv._oryzae_PXO99A 2 2
Xanthomonas_campestris_pv._campestris_str._B100 1 1
Halothiobacillus_neapolitanus_c2 2 2
Spiribacter_sp._UAH-SP71 1 1
Alkalilimnicola_ehrlichii_MLHE-1 1 1
Thioalkalivibrio_sulfidophilus_HL-EbGr7 6 5
Thioalkalivibrio_sp._K90mix 1 1
Thiocystis_violascens_DSM_198 8 7
Nitrosococcus_halophilus_Nc4 7 5
gamma_proteobacterium_HdN1 7 5
Photorhabdus_asymbiotica 2 2
Photorhabdus_luminescens_subsp._laumondii_TTO1 1 1
Xenorhabdus_bovienii_SS-2004 1 1
Xenorhabdus_nematophila_ATCC_19061 1 1
Providencia_stuartii_MRSN_2154 1 1
Proteus_mirabilis_HI4320 1 1
Yersinia_pseudotuberculosis_IP_31758 1 1
Yersinia_pestis_Pestoides_F 2 2
Yersinia_enterocolitica_subsp._enterocolitica_8081 1 1
Serratia_sp._ATCC_39006 1 1
Serratia_proteamaculans_568 1 1
Dickeya_zeae_Ech1591 2 2
Pectobacterium_wasabiae_WPP163 2 2
Pectobacterium_sp._SCC3193 2 2
Pectobacterium_atrosepticum_SCRI1043 2 2
Pectobacterium_carotovorum_subsp._carotovorum_PC1 2 2
Pantoea_sp._At-9b 2 2
Pantoea_vagans_C9-1 2 2
Pantoea_ananatis_LMG_20103 2 2
Erwinia_tasmaniensis_Et1/99 2 2
Erwinia_sp._Ejp617 3 3
Erwinia_billingiae_Eb661 2 2
Erwinia_pyrifoliae_Ep1/96 3 3
Erwinia_amylovora_ATCC_49946 3 3
Cronobacter_sakazakii_ES15 1 1
Enterobacteriaceae_bacterium_strain_FGI_57 1 1
Shigella_sonnei_Ss046 1 1
Enterobacter_aerogenes_KCTC_2190 1 1
Escherichia_fergusonii_ATCC_35469 1 1
Enterobacter_sp._R4-368 2 2
Enterobacter_asburiae_LF7a 1 1
Enterobacter_cloacae_subsp._dissolvens_SDM 1 1
Azotobacter_vinelandii_DJ 1 1
Pseudomonas_sp._TKP 3 3
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 2 2
Pseudomonas_entomophila_L48 1 1
Pseudomonas_syringae_pv._tomato_str._DC3000 2 2
Pseudomonas_stutzeri_A1501 2 1
Pseudomonas_fulva_12-X 1 1
Pseudomonas_putida_F1 1 1
Pseudomonas_protegens_Pf-5 1 1
Pseudomonas_fluorescens_SBW25 1 1
Pseudomonas_mendocina_ymp 5 4
Pseudomonas_aeruginosa_UCBPP-PA14 2 2
Pseudomonas_sp._VLB120 1 1
Psychrobacter_sp._G 1 1
Psychrobacter_sp._PRwf-1 1 1
Psychrobacter_arcticus_273-4 1 1
Psychrobacter_cryohalolentis_K5 1 1
Acinetobacter_oleivorans_DR1 1 1
Acinetobacter_calcoaceticus_PHEA-2 1 1
Acinetobacter_baumannii_ATCC_17978 1 1
Acinetobacter_sp._ADP1 1 1
Cycloclasticus_sp._P1 1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 1 1
Pyrolobus_fumarii_1A 3 3
Thermogladius_cellulolyticus_1633 1 1
Ignisphaera_aggregans_DSM_17230 2 2
Staphylothermus_hellenicus_DSM_12710 1 1
Staphylothermus_marinus_F1 1 1
Metallosphaera_cuprina_Ar-4 1 1
Metallosphaera_sedula_DSM_5348 1 1
Acidianus_hospitalis_W1 1 1
Sulfolobus_tokodaii_str._7 1 1
Sulfolobus_islandicus_Y.N.15.51 1 1
Sulfolobus_solfataricus_P2 1 1
Sulfolobus_acidocaldarius_DSM_639 1 1
Vulcanisaeta_moutnovskia_768-28 1 1
Vulcanisaeta_distributa_DSM_14429 1 1
Caldivirga_maquilingensis_IC-167 1 1
Pyrobaculum_sp._1860 2 2
Pyrobaculum_calidifontis_JCM_11548 2 2
Pyrobaculum_arsenaticum_DSM_13514 2 2
Pyrobaculum_oguniense_TE7 2 2
Thermoproteus_neutrophilus_V24Sta 2 2
Pyrobaculum_aerophilum_str._IM2 2 2
Pyrobaculum_islandicum_DSM_4184 2 2
Thermoproteus_uzoniensis_768-20 5 5
Thermoproteus_tenax_Kra_1 1 1
Methanosphaerula_palustris_E1-9c 1 1
Methanoregula_boonei_6A8 2 2
Methanospirillum_hungatei_JF-1 3 3
Methanoplanus_petrolearius_DSM_11571 3 3
Methanoculleus_bourgensis_MS2 1 1
Methanoculleus_marisnigri_JR1 1 1
Picrophilus_torridus_DSM_9790 1 1
Halomicrobium_mukohataei_DSM_12286 3 3
Haloarcula_hispanica_ATCC_33960 2 2
Haloarcula_marismortui_ATCC_43049 2 2
Methanobrevibacter_ruminantium_M1 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   96 95
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   48 48
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   28 28
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   24 23
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   34 34
Cryptococcus_neoformans_var._grubii_H99_ 9 9
Cryptococcus_neoformans_B-3501A_ 9 9
Cryptococcus_neoformans_JEC21_ 8 8
Paracoccidioides_brasiliensis_Pb01_ 11 11
Paracoccidioides_brasiliensis_Pb03_ 7 7
Coccidioides_posadasii_str._Silveira_ 12 12
Coccidioides_immitis_RMSCC_3703_ 11 11
Coccidioides_immitis_RMSCC_2394_ 13 13
Coccidioides_immitis_H538.4_ 9 9
Ajellomyces_dermatitidis_ER-3_ 13 13
Histoplasma_capsulatum_H143 15 15
Histoplasma_capsulatum_H88 16 16
Histoplasma_capsulatum_G186AR 17 17
Aspergillus_fumigatus_A1163_ 10 10
Candida_albicans_WO-1_ 10 9
Saccharomyces_cerevisiae_UC5 14 13
Saccharomyces_cerevisiae_PW5 15 14
Saccharomyces_cerevisiae_FL100 7 7
Saccharomyces_cerevisiae_CLIB324 6 6
Saccharomyces_cerevisiae_CBS7960 10 10
Saccharomyces_cerevisiae_YJM269 13 12
Saccharomyces_cerevisiae_T7 16 15
Saccharomyces_cerevisiae_FostersB 10 10
Saccharomyces_cerevisiae_FostersO 13 12
Saccharomyces_cerevisiae_VL3 12 11
Saccharomyces_cerevisiae_Vin13 15 14
Saccharomyces_cerevisiae_LalvinQA23 12 11
Saccharomyces_cerevisiae_AWRI796 10 9
Saccharomyces_cerevisiae_Sigma1278b 16 15
Saccharomyces_cerevisiae_W303 15 14
Saccharomyces_cerevisiae_JAY291 15 14
Saccharomyces_cerevisiae_AWRI1631 10 10
Saccharomyces_cerevisiae_YPS163 4 4
Saccharomyces_cerevisiae_M22 6 6
Saccharomyces_cerevisiae_T73 4 4
Saccharomyces_cerevisiae_CLIB215 15 14
Saccharomyces_cerevisiae_Y10 5 5
Saccharomyces_cerevisiae_YJM789_ 16 15
Saccharomyces_cerevisiae_YJM789 16 15
Saccharomyces_cerevisiae_RM11-1a 16 15
Saccharomyces_cerevisiae_RM11-1a_ 15 14
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   16 15
Schizosaccharomyces_pombe_972h-_ 8 8
Batrachochytrium_dendrobatidis_JEL423_ 12 12
Batrachochytrium_dendrobatidis_JAM81_ 12 12
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   20 20
Hordeum_vulgare_22   (Domesticated barley)   28 28
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   19 18
Trypanosoma_brucei_Lister_427_v4.1 12 12
Neospora_caninum_Nc-Liverpool_6.2 14 13
Plasmodium_falciparum_HB3_ 6 5
Plasmodium_falciparum_Dd2_ 5 4
Chroococcidiopsis_thermalis_PCC_7203 15 13
Chamaesiphon_minutus_PCC_6605 14 11
Synechocystis_sp._PCC_6803_substr._PCC-P 11 10
Synechocystis_sp._PCC_6803_substr._PCC-N 11 10
Synechocystis_sp._PCC_6803_substr._GT-I 11 10
Synechocystis_sp._PCC_6803 11 10
Cyanobium_gracile_PCC_6307 5 4
Dactylococcopsis_salina_PCC_8305 5 4
Synechococcus_sp._JA-2-3B'a(2-13) 10 10
Synechococcus_sp._JA-3-3Ab 10 10
Synechococcus_sp._CC9902 1 1
Synechococcus_sp._RCC307 1 1
Synechococcus_sp._WH_7803 1 1
Synechococcus_sp._PCC_7002 9 9
Synechococcus_elongatus_PCC_6301 2 2
Prochlorococcus_marinus_str._MIT_9303 2 1
Crinalium_epipsammum_PCC_9333 13 13
Oscillatoria_nigro-viridis_PCC_7112 13 12
Oscillatoria_acuminata_PCC_6304 17 16
Arthrospira_platensis_NIES-39 19 15
Cyanothece_sp._PCC_7822 22 20
Cyanothece_sp._PCC_7425 23 20
Cyanothece_sp._PCC_7424 15 14
Cyanothece_sp._ATCC_51142 15 14
Cyanothece_sp._PCC_8801 13 12
Cyanobacterium_aponinum_PCC_10605 15 14
Cyanobacterium_stanieri_PCC_7202 12 11
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 5 5
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 14 14
Stanieria_cyanosphaera_PCC_7437 15 14
Calothrix_parietina_Calothrix_sp._PCC_6303 16 15
Cylindrospermum_stagnale_PCC_7417 13 13
Anabaena_cylindrica_PCC_7122 11 11
Adlercreutzia_equolifaciens_DSM_19450 4 4
Frankia_sp._EuI1c 13 11
Frankia_sp._CcI3 12 9
Nocardiopsis_alba_ATCC_BAA-2165 5 5
Streptomyces_albus_J1074 8 7
Streptomyces_rapamycinicus_NRRL_5491 12 11
Streptomyces_davawensis_JCM_4913 11 9
Streptomyces_fulvissimus_DSM_40593 12 10
Streptomyces_venezuelae_ATCC_10712 11 9
Streptomyces_collinus_Tu_365 12 10
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 10 9
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 11 10
Saccharothrix_espanaensis_DSM_44229 7 7
Amycolatopsis_mediterranei_RB 4 4
Amycolatopsis_mediterranei_S699 4 4
Amycolatopsis_mediterranei_S699 4 4
Amycolatopsis_orientalis_HCCB10007 5 5
Propionibacterium_avidum_44067 4 4
Propionibacterium_acnes_ATCC_11828 4 4
Propionibacterium_acnes_TypeIA2_P.acn31 4 4
Propionibacterium_acnes_TypeIA2_P.acn17 4 4
Propionibacterium_acnes_TypeIA2_P.acn33 4 4
Propionibacterium_acnes_C1 4 4
Propionibacterium_acnes_HL096PA1 4 4
Propionibacterium_acnes_6609 4 4
Propionibacterium_acnes_266 4 4
Propionibacterium_acnes_KPA171202 4 4
Propionibacterium_acidipropionici_ATCC_4875 6 5
Actinoplanes_friuliensis_DSM_7358 5 5
Rhodococcus_pyridinivorans_SB3094 3 3
Rhodococcus_erythropolis_CCM2595 3 3
Nocardia_brasiliensis_ATCC_700358 14 13
Mycobacterium_sp._MOTT36Y 15 10
Mycobacterium_sp._JDM601 6 5
Mycobacterium_abscessus_subsp._bolletii_50594 5 4
Mycobacterium_liflandii_128FXT 11 9
Mycobacterium_sp._KMS 7 6
Mycobacterium_sp._MCS 7 6
Mycobacterium_yongonense_05-1390 14 9
Mycobacterium_intracellulare_MOTT-64 14 9
Mycobacterium_indicus_pranii_MTCC_9506 14 9
Mycobacterium_intracellulare_MOTT-02 14 9
Mycobacterium_avium_subsp._paratuberculosis_MAP4 14 10
Mycobacterium_avium_subsp._paratuberculosis_K-10 13 9
Mycobacterium_canettii_CIPT_140070017 10 8
Mycobacterium_canettii_CIPT_140060008 11 9
Mycobacterium_canettii_CIPT_140070008 11 9
Mycobacterium_canettii_CIPT_140070010 11 9
Mycobacterium_tuberculosis_EAI5/NITR206 8 7
Mycobacterium_tuberculosis_EAI5 8 7
Mycobacterium_tuberculosis_CAS/NITR204 6 5
Mycobacterium_tuberculosis_str._Beijing/NITR203 8 7
Mycobacterium_tuberculosis_UT205 8 7
Mycobacterium_tuberculosis_RGTB423 5 5
Mycobacterium_tuberculosis_RGTB327 6 5
Mycobacterium_tuberculosis_CTRI-2 9 8
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 8 7
Mycobacterium_tuberculosis_KZN_605 8 7
Mycobacterium_tuberculosis_KZN_4207 8 7
Mycobacterium_tuberculosis_CCDC5180 8 7
Mycobacterium_tuberculosis_CCDC5079 9 8
Mycobacterium_tuberculosis_CCDC5079 9 8
Mycobacterium_tuberculosis_H37Ra 8 7
Mycobacterium_tuberculosis_str._Haarlem/NITR202 6 6
Mycobacterium_tuberculosis_str._Haarlem 9 8
Mycobacterium_tuberculosis_F11 8 7
Mycobacterium_tuberculosis_H37Rv 8 7
Mycobacterium_tuberculosis_CDC1551 9 8
Mycobacterium_bovis_AF2122/97 9 8
Mycobacterium_bovis_BCG_str._Korea_1168P 9 8
Mycobacterium_bovis_BCG_str._Mexico 8 7
Mycobacterium_bovis_BCG_str._Tokyo_172 9 8
Mycobacterium_gilvum_Spyr1 5 4
Mycobacterium_smegmatis_str._MC2_155 5 4
Mycobacterium_leprae_TN 3 3
Mycobacterium_kansasii_ATCC_12478 21 14
Corynebacterium_maris_DSM_45190 3 3
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 3 3
Corynebacterium_terpenotabidum_Y-11 3 3
Corynebacterium_ulcerans_BR-AD22 3 3
Corynebacterium_ulcerans_809 3 3
Corynebacterium_urealyticum_DSM_7111 3 3
Corynebacterium_argentoratense_DSM_44202 3 3
Corynebacterium_callunae_DSM_20147 3 3
Corynebacterium_pseudotuberculosis_258 3 3
Corynebacterium_pseudotuberculosis_Cp162 3 3
Corynebacterium_pseudotuberculosis_P54B96 3 3
Corynebacterium_pseudotuberculosis_267 3 3
Corynebacterium_pseudotuberculosis_1/06-A 3 3
Corynebacterium_pseudotuberculosis_42/02-A 3 3
Corynebacterium_pseudotuberculosis_3/99-5 3 3
Corynebacterium_pseudotuberculosis_31 3 3
Corynebacterium_pseudotuberculosis_CIP_52.97 3 3
Corynebacterium_pseudotuberculosis_PAT10 3 3
Corynebacterium_pseudotuberculosis_I19 3 3
Corynebacterium_pseudotuberculosis_FRC41 3 3
Corynebacterium_pseudotuberculosis_C231 3 3
Corynebacterium_pseudotuberculosis_1002 3 3
Corynebacterium_glutamicum_MB001 3 3
Corynebacterium_glutamicum_SCgG2 3 3
Corynebacterium_glutamicum_SCgG1 3 3
Corynebacterium_glutamicum_ATCC_13032 3 3
Corynebacterium_glutamicum_ATCC_13032 3 3
Corynebacterium_glutamicum_ATCC_13032 3 3
Corynebacterium_diphtheriae_BH8 3 3
Corynebacterium_diphtheriae_INCA_402 3 3
Corynebacterium_diphtheriae_VA01 3 3
Corynebacterium_diphtheriae_HC04 3 3
Corynebacterium_diphtheriae_HC03 3 3
Corynebacterium_diphtheriae_HC02 3 3
Corynebacterium_diphtheriae_HC01 3 3
Corynebacterium_diphtheriae_241 3 3
Corynebacterium_diphtheriae_CDCE_8392 3 3
Corynebacterium_diphtheriae_PW8 3 3
Corynebacterium_diphtheriae_C7_(beta) 3 3
Corynebacterium_diphtheriae_31A 3 3
Tropheryma_whipplei_str._Twist 3 3
Leifsonia_xyli_subsp._cynodontis_DSM_46306 7 7
Clavibacter_michiganensis_subsp._sepedonicus 5 5
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 4 4
Gardnerella_vaginalis_HMP9231 4 4
Gardnerella_vaginalis_ATCC_14019 4 4
Bifidobacterium_longum_NCC2705 4 4
Bifidobacterium_longum_DJO10A 5 5
Bifidobacterium_longum_subsp._infantis_157F 5 5
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 5 5
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 5 5
Bifidobacterium_longum_subsp._longum_KACC_91563 5 5
Bifidobacterium_longum_subsp._longum_BBMN68 5 5
Bifidobacterium_longum_subsp._longum_F8 4 4
Bifidobacterium_longum_subsp._longum_JCM_1217 5 5
Bifidobacterium_thermophilum_RBL67 4 4
Bifidobacterium_animalis_subsp._animalis_ATCC_25527 5 5
Bifidobacterium_animalis_subsp._lactis_Bl12 5 5
Bifidobacterium_animalis_subsp._lactis_B420 5 5
Bifidobacterium_animalis_subsp._lactis_ATCC_27673 5 5
Bifidobacterium_animalis_subsp._lactis_BLC1 5 5
Bifidobacterium_animalis_subsp._lactis_CNCM_I-2494 5 5
Bifidobacterium_animalis_subsp._lactis_Bi-07 5 5
Bifidobacterium_animalis_subsp._lactis_V9 5 5
Bifidobacterium_animalis_subsp._lactis_DSM_10140 5 5
Bifidobacterium_animalis_subsp._lactis_BB-12 5 5
Bifidobacterium_animalis_subsp._lactis_AD011 5 5
Bifidobacterium_breve_UCC2003 4 4
Bifidobacterium_asteroides_PRL2011 4 4
Bifidobacterium_bifidum_PRL2010 5 5
Bifidobacterium_bifidum_BGN4 5 5
Actinomyces_graevenitzii_C83_ 8 8
Actinomyces_odontolyticus_ATCC_17982 5 5
Actinomyces_viscosus_C505 11 11
Chthonomonas_calidirosea_T49 7 4
Deinococcus_peraridilitoris_DSM_19664 2 2
[Eubacterium]_cylindroides_[Eubacterium]_cylindroides_T2-87 1 1
Clostridium_thermocellum_DSM_1313 4 3
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 1 1
Faecalibacterium_prausnitzii_L2-6 4 4
Ruminococcus_champanellensis_18P13 1 1
Clostridium_acidurici_9a 1 1
Desulfosporosinus_meridiei_DSM_13257 2 2
Desulfitobacterium_dichloroeliminans_LMG_P-21439 2 2
Desulfitobacterium_hafniense_DCB-2 2 2
Desulfotomaculum_gibsoniae_DSM_7213 2 2
Coprococcus_catus_GD/7 2 2
Roseburia_intestinalis_XB6B4 1 1
Clostridium_sp._SY8519 1 1
Clostridium_saccharobutylicum_DSM_13864 3 3
Clostridium_autoethanogenum_DSM_10061 1 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 4 4
Clostridium_kluyveri_NBRC_12016 1 1
Clostridium_tetani_genome_12124569 1 1
Clostridium_perfringens_SM101 1 1
Clostridium_perfringens_str._13 1 1
Clostridium_pasteurianum_BC1 1 1
Clostridium_botulinum_H04402_065 1 1
Clostridium_botulinum_BKT015925 1 1
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_E3_str._Alaska_E43 1 1
Clostridium_botulinum_B1_str._Okra 1 1
Clostridium_botulinum_Ba4_str._657 1 1
Clostridium_botulinum_A2_str._Kyoto 1 1
Clostridium_botulinum_A3_str._Loch_Maree 1 1
Clostridium_botulinum_A_str._Hall 1 1
Clostridium_botulinum_A_str._ATCC_19397 1 1
Clostridium_acetobutylicum_DSM_1731 5 5
Clostridium_acetobutylicum_EA_2018 5 5
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1 1
Thermoanaerobacterium_thermosaccharolyticum_M0795 1 1
Thermacetogenium_phaeum_DSM_12270 2 2
Thermoanaerobacter_sp._X513 1 1
Halobacteroides_halobius_DSM_5150 1 1
Streptococcus_suis_ST3 1 1
Streptococcus_suis_D12 1 1
Thermobacillus_composti_KWC4 1 1
Paenibacillus_sp._Y412MC10 2 2
Paenibacillus_mucilaginosus_KNP414 2 2
Paenibacillus_mucilaginosus_K02 2 2
Paenibacillus_larvae_subsp._larvae_DSM_25430 1 1
Paenibacillus_polymyxa_CR1 3 3
Paenibacillus_polymyxa_SC2 3 3
Paenibacillus_polymyxa_E681 3 3
Bacillus_thuringiensis_HD-789 1 1
Bacillus_megaterium_WSH-002 1 1
Bacillus_megaterium_QM_B1551 1 1
Staphylococcus_aureus_subsp._aureus_MSHR1132 2 1
Staphylococcus_aureus_CA-347 2 1
Staphylococcus_aureus_Bmb9393 2 1
Staphylococcus_aureus_M1 2 1
Staphylococcus_aureus_08BA02176 2 1
Staphylococcus_aureus_ST228/18412 2 1
Staphylococcus_aureus_ST228/18341 2 1
Staphylococcus_aureus_ST228/16125 2 1
Staphylococcus_aureus_ST228/16035 2 1
Staphylococcus_aureus_ST228/15532 2 1
Staphylococcus_aureus_ST228/10497 2 1
Staphylococcus_aureus_ST228/10388 2 1
Staphylococcus_aureus_04-02981 2 1
Staphylococcus_aureus_RF122 2 1
Staphylococcus_aureus_subsp._aureus_Z172 2 1
Staphylococcus_aureus_subsp._aureus_6850 2 1
Staphylococcus_aureus_subsp._aureus_SA957 2 1
Staphylococcus_aureus_subsp._aureus_CN1 2 1
Staphylococcus_aureus_subsp._aureus_SA40 2 1
Staphylococcus_aureus_subsp._aureus_11819-97 2 1
Staphylococcus_aureus_subsp._aureus_M013 2 1
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 2 1
Staphylococcus_aureus_subsp._aureus_VC40 2 2
Staphylococcus_aureus_subsp._aureus_T0131 2 1
Staphylococcus_aureus_subsp._aureus_LGA251 2 1
Staphylococcus_aureus_subsp._aureus_ECT-R_2 2 1
Staphylococcus_aureus_subsp._aureus_JKD6159 2 1
Staphylococcus_aureus_subsp._aureus_ED133 2 1
Staphylococcus_aureus_subsp._aureus_ED98 2 1
Staphylococcus_aureus_subsp._aureus_TW20 2 1
Staphylococcus_aureus_subsp._aureus_55/2053 2 1
Staphylococcus_aureus_subsp._aureus_TCH60 2 1
Staphylococcus_aureus_subsp._aureus_str._JKD6008 2 1
Staphylococcus_aureus_subsp._aureus_71193 2 1
Staphylococcus_aureus_subsp._aureus_S0385 2 1
Staphylococcus_aureus_subsp._aureus_str._Newman 2 1
Staphylococcus_aureus_subsp._aureus_Mu3 2 1
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 2 1
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 2 1
Staphylococcus_aureus_subsp._aureus_JH9 2 1
Staphylococcus_aureus_subsp._aureus_MSSA476 2 1
Staphylococcus_aureus_subsp._aureus_MRSA252 2 1
Staphylococcus_aureus_subsp._aureus_MW2 2 1
Staphylococcus_aureus_subsp._aureus_N315 2 1
Staphylococcus_aureus_subsp._aureus_Mu50 2 1
Staphylococcus_aureus_subsp._aureus_COL 2 1
Staphylococcus_aureus_subsp._aureus_NCTC_8325 2 1
Prevotella_sp._oral_taxon_299_str._F0039 1 1
Prevotella_dentalis_DSM_3688 1 1
Porphyromonas_gingivalis_TDC60 1 1
Porphyromonas_gingivalis_W83 1 1
Bacteroides_fragilis_638R 1 1
Bacteroides_fragilis_NCTC_9343 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 2 2
Chlamydia_pecorum_P787 2 1
Chlamydia_pecorum_W73 2 1
Chlamydia_pecorum_PV3056/3 2 1
Chlamydophila_pneumoniae_LPCoLN 2 1
Chlamydophila_pneumoniae_J138 2 1
Chlamydophila_pneumoniae_CWL029 2 1
Chlamydophila_pneumoniae_AR39 2 1
Chlamydia_psittaci_01DC12 2 1
Chlamydia_psittaci_WC 2 1
Chlamydia_psittaci_M56 2 1
Chlamydia_psittaci_WS/RT/E30 2 1
Chlamydia_psittaci_VS225 2 1
Chlamydia_psittaci_MN 2 1
Chlamydia_psittaci_GR9 2 1
Chlamydia_psittaci_84/55 2 1
Chlamydia_psittaci_08DC60 2 1
Chlamydia_psittaci_02DC15 2 1
Chlamydia_psittaci_C19/98 2 1
Chlamydia_psittaci_NJ1 2 1
Chlamydia_psittaci_CP3 2 1
Chlamydophila_psittaci_RD1 2 1
Chlamydia_psittaci_Mat116 2 1
Chlamydophila_psittaci_6BC 2 1
Chlamydophila_psittaci_6BC 2 1
Chlamydia_trachomatis_C/TW-3 2 1
Chlamydia_trachomatis_L2/434/Bu(f) 2 1
Chlamydia_trachomatis_L2/434/Bu(i) 2 1
Chlamydia_trachomatis_IU888 2 1
Chlamydia_trachomatis_IU824 2 1
Chlamydia_trachomatis_L2b/Canada2 2 1
Chlamydia_trachomatis_L2b/Canada1 2 1
Chlamydia_trachomatis_L3/404/LN 2 1
Chlamydia_trachomatis_L2b/Ams5 2 1
Chlamydia_trachomatis_L2b/Ams4 2 1
Chlamydia_trachomatis_L2b/Ams3 2 1
Chlamydia_trachomatis_L2b/Ams2 2 1
Chlamydia_trachomatis_L2b/Ams1 2 1
Chlamydia_trachomatis_L2b/795 2 1
Chlamydia_trachomatis_L2b/CV204 2 1
Chlamydia_trachomatis_L2b/LST 2 1
Chlamydia_trachomatis_L2b/UCH-2 2 1
Chlamydia_trachomatis_L2b/8200/07 2 1
Chlamydia_trachomatis_L2/25667R 2 1
Chlamydia_trachomatis_L1/224 2 1
Chlamydia_trachomatis_L1/115 2 1
Chlamydia_trachomatis_L1/440/LN 2 1
Chlamydia_trachomatis_K/SotonK1 2 1
Chlamydia_trachomatis_Ia/SotonIa3 2 1
Chlamydia_trachomatis_Ia/SotonIa1 2 1
Chlamydia_trachomatis_G/SotonG1 2 1
Chlamydia_trachomatis_F/SotonF3 2 1
Chlamydia_trachomatis_F/SW5 2 1
Chlamydia_trachomatis_F/SW4 2 1
Chlamydia_trachomatis_E/SotonE8 2 1
Chlamydia_trachomatis_E/SotonE4 2 1
Chlamydia_trachomatis_E/SW3 2 1
Chlamydia_trachomatis_D/SotonD6 2 1
Chlamydia_trachomatis_D/SotonD5 2 1
Chlamydia_trachomatis_D/SotonD1 2 1
Chlamydia_trachomatis_A/5291 2 1
Chlamydia_trachomatis_A/363 2 1
Chlamydia_trachomatis_RC-J/971 2 1
Chlamydia_trachomatis_RC-L2/55 2 1
Chlamydia_trachomatis_J/6276tet1 2 1
Chlamydia_trachomatis_RC-J/966 2 1
Chlamydia_trachomatis_RC-J(s)/122 2 1
Chlamydia_trachomatis_RC-F(s)/342 2 1
Chlamydia_trachomatis_RC-L2(s)/3 2 1
Chlamydia_trachomatis_RC-J/953 2 1
Chlamydia_trachomatis_RC-J943 2 1
Chlamydia_trachomatis_RC-Fs852 2 1
Chlamydia_trachomatis_RC-L2s46 2 1
Chlamydia_trachomatis_RC-F69 2 1
Chlamydia_trachomatis_L2c 2 1
Chlamydia_trachomatis_D-LC 2 1
Chlamydia_trachomatis_D-EC 2 1
Chlamydia_trachomatis_G/9301 2 1
Chlamydia_trachomatis_G/11074 2 1
Chlamydia_trachomatis_G/11222 2 1
Chlamydia_trachomatis_G/9768 2 1
Chlamydia_trachomatis_E/150 2 1
Chlamydia_trachomatis_E/11023 2 1
Chlamydia_trachomatis_B/TZ1A828/OT 2 1
Chlamydia_trachomatis_Sweden2 2 1
Chlamydia_trachomatis_E/Bour 2 1
Chlamydia_trachomatis_A2497 2 1
Chlamydia_trachomatis_A2497 2 1
Chlamydia_trachomatis_L2b/UCH-1/proctitis 2 1
Chlamydia_trachomatis_434/Bu 2 1
Chlamydia_trachomatis_A/HAR-13 2 1
Chlamydia_trachomatis_D/UW-3/CX 2 1
Singulisphaera_acidiphila_DSM_18658 28 22
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 1 1
Leptospira_interrogans_serovar_Lai_str._56601 1 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1 1
Spirochaeta_thermophila_DSM_6578 3 3
Bdellovibrio_exovorus_JSS 7 6
Bdellovibrio_bacteriovorus_str._Tiberius 9 8
Campylobacter_jejuni_RM1221 1 1
Desulfocapsa_sulfexigens_DSM_10523 6 5
Lawsonia_intracellularis_N343 1 1
Desulfovibrio_vulgaris_RCH1 1 1
Desulfovibrio_vulgaris_str._'Miyazaki_F' 1 1
Desulfovibrio_vulgaris_str._Hildenborough 1 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1 1
Sorangium_cellulosum_So0157-2 59 56
Anaeromyxobacter_sp._K 17 14
Anaeromyxobacter_dehalogenans_2CP-C 17 14
Myxococcus_stipitatus_DSM_14675 56 50
Burkholderia_phenoliruptrix_BR3459a 3 2
Pandoraea_pnomenusa_3kgm 2 2
Burkholderia_sp._YI23 4 3
Burkholderia_sp._CCGE1003 4 3
Burkholderia_sp._CCGE1001 3 2
Burkholderia_sp._KJ006 1 1
Burkholderia_thailandensis_MSMB121 3 3
Burkholderia_pseudomallei_MSHR305 2 2
Burkholderia_pseudomallei_NCTC_13179 2 2
Burkholderia_pseudomallei_BPC006 2 2
Burkholderia_pseudomallei_1026b 2 2
Burkholderia_pseudomallei_MSHR346 1 1
Burkholderia_pseudomallei_668 2 2
Burkholderia_pseudomallei_1710b 2 2
Burkholderia_pseudomallei_K96243 2 2
Burkholderia_mallei_NCTC_10229 2 2
Burkholderia_mallei_NCTC_10247 2 2
Burkholderia_mallei_ATCC_23344 2 2
Burkholderia_lata 3 3
Burkholderia_ambifaria_MC40-6 2 2
Burkholderia_cenocepacia_MC0-3 2 2
Burkholderia_cenocepacia_AU_1054 2 2
Burkholderia_cenocepacia_J2315 2 2
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_cepacia_GG4 1 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 3 2
Alicycliphilus_denitrificans_BC 3 2
Variovorax_paradoxus_B4 5 5
Variovorax_paradoxus_EPS 7 7
Taylorella_asinigenitalis_14/45 2 2
Taylorella_equigenitalis_14/56 1 1
Taylorella_equigenitalis_ATCC_35865 1 1
Bordetella_parapertussis_Bpp5 1 1
Bordetella_bronchiseptica_MO149 2 2
Bordetella_bronchiseptica_253 2 2
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1 1
Sulfuricella_denitrificans_skB26 6 3
Leisingera_methylohalidivorans_DSM_14336 1 1
Rhodobacter_sphaeroides_KD131 1 1
Rhodobacter_sphaeroides_ATCC_17025 3 3
Rhodobacter_sphaeroides_2.4.1 2 2
Paracoccus_aminophilus_JCM_7686 1 1
Sinorhizobium_fredii_USDA_257 2 2
Sinorhizobium_meliloti_GR4 1 1
Rhizobium_etli_CFN_42 1 1
Rhizobium_etli_bv._mimosae_str._Mim1 3 3
Rhizobium_leguminosarum_bv._trifolii_WSM2304 2 2
Rhizobium_leguminosarum_bv._trifolii_WSM1325 2 2
Hyphomicrobium_nitrativorans_NL23 5 4
Hyphomicrobium_denitrificans_1NES1 2 2
Rhodopseudomonas_palustris_TIE-1 1 1
Rhodopseudomonas_palustris_CGA009 1 1
Bradyrhizobium_sp._BTAi1 1 1
Bradyrhizobium_oligotrophicum_S58 2 2
Bradyrhizobium_japonicum_USDA_6 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 8 6
Vibrio_fischeri_ES114 1 1
Vibrio_parahaemolyticus_BB22OP 3 3
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 2 2
Vibrio_anguillarum_Listonella_anguillarum_M3 2 2
Vibrio_nigripulchritudo_VibrioScope 2 2
Vibrio_vulnificus_CMCP6 1 1
Vibrio_vulnificus_YJ016 1 1
Vibrio_cholerae_LMA3984-4 1 1
Vibrio_cholerae_M66-2 1 1
Vibrio_cholerae_O395 1 1
Vibrio_cholerae_IEC224 1 1
Vibrio_cholerae_O1_str._2010EL-1786 1 1
Vibrio_cholerae_MJ-1236 1 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1 1
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS155 1 1
Glaciecola_psychrophila_170 2 2
Alteromonas_macleodii_str._'English_Channel_673' 1 1
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 1 1
Alteromonas_macleodii_str._'Black_Sea_11' 1 1
Alteromonas_macleodii_ATCC_27126 1 1
Thalassolituus_oleivorans_MIL-1 4 4
Stenotrophomonas_maltophilia_D457 2 2
Stenotrophomonas_maltophilia_JV3 2 2
Stenotrophomonas_maltophilia_R551-3 1 1
Xylella_fastidiosa_subsp._fastidiosa_GB514 1 1
Xylella_fastidiosa_M12 1 1
Xylella_fastidiosa_Temecula1 1 1
Xylella_fastidiosa_9a5c 1 1
Xanthomonas_citri_subsp._citri_Aw12879 2 2
Xanthomonas_campestris_pv._vesicatoria_str._85-10 3 3
Xanthomonas_axonopodis_pv._citrumelo_F1 3 3
Xanthomonas_axonopodis_Xac29-1 1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 2 2
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 2 2
Xanthomonas_oryzae_pv._oryzae_KACC_10331 1 1
Xanthomonas_campestris_pv._raphani_756C 1 1
Xanthomonas_campestris_pv._campestris_str._8004 1 1
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 1 1
Spiribacter_salinus_M19-40 1 1
Thioflavicoccus_mobilis_8321 2 1
Proteus_mirabilis_BB2000 1 1
Yersinia_pseudotuberculosis_PB1/+ 2 2
Yersinia_pseudotuberculosis_YPIII 1 1
Yersinia_pseudotuberculosis_IP_32953 2 2
Yersinia_pestis_biovar_Microtus_str._91001 2 2
Yersinia_pestis_A1122 1 1
Yersinia_pestis_Z176003 1 1
Yersinia_pestis_D182038 1 1
Yersinia_pestis_D106004 1 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 1 1
Yersinia_pestis_Nepal516 1 1
Yersinia_pestis_Antiqua 2 2
Yersinia_pestis_Angola 1 1
Yersinia_pestis_CO92 2 2
Yersinia_pestis_KIM10+ 1 1
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 1 1
Serratia_marcescens_FGI94 1 1
Serratia_marcescens_WW4 1 1
Dickeya_dadantii_Ech586 2 2
Dickeya_dadantii_3937 2 2
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 2 2
Pantoea_ananatis_LMG_5342 2 2
Pantoea_ananatis_PA13 2 2
Pantoea_ananatis_AJ13355 2 2
Erwinia_pyrifoliae_DSM_12163 3 3
Erwinia_amylovora_CFBP1430 3 3
Cronobacter_sakazakii_CMCC_45402 1 1
Cronobacter_sakazakii_SP291 1 1
Cronobacter_sakazakii_ATCC_BAA-894 1 1
Shigella_sonnei_53G 1 1
Shigella_flexneri_2002017 1 1
Shigella_flexneri_2a_str._2457T 1 1
Enterobacter_aerogenes_EA1509E 1 1
Escherichia_coli_E24377A 1 1
Escherichia_coli_E._coli_PMV-1 1 1
Escherichia_coli_LY180 1 1
Escherichia_coli_O104:H4_str._2009EL-2050 1 1
Escherichia_coli_O104:H4_str._2009EL-2071 1 1
Escherichia_coli_O104:H4_str._2011C-3493 1 1
Escherichia_coli_UM146 1 1
Escherichia_coli_042 1 1
Escherichia_coli_Xuzhou21 1 1
Escherichia_coli_IHE3034 1 1
Escherichia_coli_UMNK88 1 1
Escherichia_coli_O83:H1_str._NRG_857C 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_KO11FL 1 1
Escherichia_coli_LF82 1 1
Escherichia_coli_ED1a 1 1
Escherichia_coli_UMN026 1 1
Escherichia_coli_55989 1 1
Escherichia_coli_S88 1 1
Escherichia_coli_IAI1 1 1
Escherichia_coli_W 1 1
Escherichia_coli_W 1 1
Escherichia_coli_SE11 1 1
Escherichia_coli_APEC_O1 1 1
Escherichia_coli_O103:H2_str._12009 1 1
Escherichia_coli_UTI89 1 1
Escherichia_coli_536 1 1
Escherichia_coli_HS 1 1
Escherichia_coli_O111:H-_str._11128 1 1
Escherichia_coli_O157:H7_str._TW14359 1 1
Escherichia_coli_O157:H7_str._EC4115 1 1
Escherichia_coli_O157:H7_str._Sakai 1 1
Escherichia_coli_O157:H7_str._EDL933 1 1
Enterobacter_cloacae_EcWSU1 1 1
Enterobacter_cloacae_subsp._cloacae_ENHKU01 1 1
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 1 1
Azotobacter_vinelandii_CA6 1 1
Azotobacter_vinelandii_CA 1 1
Pseudomonas_denitrificans_ATCC_13867 1 1
Pseudomonas_syringae_pv._phaseolicola_1448A 2 2
Pseudomonas_syringae_pv._syringae_B728a 1 1
Pseudomonas_stutzeri_CCUG_29243 3 2
Pseudomonas_stutzeri_DSM_10701 1 1
Pseudomonas_stutzeri_DSM_4166 3 2
Pseudomonas_stutzeri_RCH2 3 2
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 3 2
Pseudomonas_putida_DOT-T1E 1 1
Pseudomonas_putida_ND6 1 1
Pseudomonas_putida_KT2440 1 1
Pseudomonas_putida_GB-1 1 1
Pseudomonas_protegens_CHA0 1 1
Pseudomonas_poae_RE*1-1-14 3 3
Pseudomonas_fluorescens_F113 3 3
Pseudomonas_fluorescens_A506 3 3
Pseudomonas_fluorescens_R124 2 2
Pseudomonas_fluorescens_Pf0-1 1 1
Pseudomonas_resinovorans_NBRC_106553 2 1
Pseudomonas_mendocina_NK-01 1 1
Pseudomonas_aeruginosa_SCV20265 2 2
Pseudomonas_aeruginosa_MTB-1 3 3
Pseudomonas_aeruginosa_LES431 2 2
Pseudomonas_aeruginosa_RP73 2 2
Pseudomonas_aeruginosa_B136-33 2 2
Pseudomonas_aeruginosa_PA1R 2 2
Pseudomonas_aeruginosa_PA1 2 2
Pseudomonas_aeruginosa_DK2 2 2
Pseudomonas_aeruginosa_NCGM2.S1 2 2
Pseudomonas_aeruginosa_M18 2 2
Pseudomonas_aeruginosa_LESB58 2 2
Pseudomonas_aeruginosa_PA7 2 2
Pseudomonas_aeruginosa_PAO1 2 2
Acinetobacter_genomosp._13TU__RUH2624 1 1
Acinetobacter_sp.__SH024 1 1
Acinetobacter_calcoaceticus_ruh2202 1 1
Acinetobacter_baumannii_ZW85-1 1 1
Acinetobacter_baumannii_TYTH-1 1 1
Acinetobacter_baumannii_BJAB0868 1 1
Acinetobacter_baumannii_BJAB0715 1 1
Acinetobacter_baumannii_BJAB07104 1 1
Acinetobacter_baumannii_TCDC-AB0715 1 1
Acinetobacter_baumannii_D1279779 1 1
Acinetobacter_baumannii_MDR-TJ 1 1
Acinetobacter_baumannii_1656-2 1 1
Acinetobacter_baumannii__ATCC_19606 1 1
Acinetobacter_baumannii_AB307-0294 1 1
Acinetobacter_baumannii_AYE 1 1
Acinetobacter_baumannii_SDF 1 1
Acinetobacter_baumannii_MDR-ZJ06 1 1
Acinetobacter_baumannii_AB0057 1 1
Acinetobacter_baumannii_ACICU 1 1
Acinetobacter_radioresistens__SH164 1 1
Acinetobacter_junii__SH205 1 1
Acinetobacter_johnsonii__SH046 1 1
Acinetobacter_lwoffii__SH145 1 1
Cycloclasticus_zancles_7-ME 1 1
Sulfolobus_islandicus_LAL14/1 1 1
Sulfolobus_islandicus_REY15A 1 1
Sulfolobus_islandicus_HVE10/4 1 1
Sulfolobus_islandicus_Y.G.57.14 1 1
Sulfolobus_islandicus_L.S.2.15 1 1
Sulfolobus_islandicus_M.16.27 1 1
Sulfolobus_islandicus_M.14.25 1 1
Sulfolobus_islandicus_M.16.4 1 1
Sulfolobus_islandicus_L.D.8.5 1 1
Sulfolobus_solfataricus_98/2 1 1
Sulfolobus_acidocaldarius_SUSAZ 1 1
Sulfolobus_acidocaldarius_Ron12/I 1 1
Sulfolobus_acidocaldarius_N8 1 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1 1
Halovivax_ruber_XH-70 3 3
Natronobacterium_gregoryi_SP2 3 3
Haloarcula_hispanica_N601 2 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   65 65
Pan_troglodytes_69_2.1.4   (Chimpanzee)   48 48
Gorilla_gorilla_69_3.1   (Western gorilla)   50 50
Pongo_abelii_69_2   (Sumatran orangutan)   49 49
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   47 47
Macaca_mulatta_69_1   (Rhesus monkey)   45 45
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   51 51
Otolemur_garnettii_69_3   (Small-eared galago)   51 51
Microcebus_murinus_69_1   (Gray mouse lemur)   40 37
Rattus_norvegicus_69_3.4   (Norway rat)   47 47
Mus_musculus_69_38   (House mouse)   53 53
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   40 39
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   44 44
Cavia_porcellus_69_3   (Domestic guinea pig)   43 43
Oryctolagus_cuniculus_69_2   (Rabbit)   43 43
Ochotona_princeps_69   (American pika)   40 40
Tupaia_belangeri_69   (Northern tree shrew)   32 32
Sus_scrofa_69_10.2   (Pig)   50 50
Bos_taurus_69_3.1   (Cattle)   49 49
Vicugna_pacos_69_1   (Alpaca)   26 26
Tursiops_truncatus_69_1   (Bottlenose dolphin)   47 47
Mustela_putorius_furo_69_1.0   (Domestic ferret)   51 51
Ailuropoda_melanoleuca_69_1   (Giant panda)   51 51
Canis_familiaris_69_3.1   (Dog)   54 54
Felis_catus_69   (Domestic cat)   36 34
Equus_caballus_69_2   (Horse)   49 49
Myotis_lucifugus_69_2.0   (Little brown bat)   44 44
Pteropus_vampyrus_69_1   (Large flying fox)   49 48
Sorex_araneus_69_1   (European shrew)   30 27
Erinaceus_europaeus_69   (Western European hedgehog)   32 31
Procavia_capensis_69_1   (Cape rock hyrax)   45 43
Loxodonta_africana_69_3   (African savanna elephant)   47 47
Echinops_telfairi_69   (Small Madagascar hedgehog)   39 38
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   36 35
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   28 27
Macropus_eugenii_69_1.0   (Tammar wallaby)   39 39
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   48 48
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   52 52
Ornithorhynchus_anatinus_69_5   (Platypus)   41 41
Petromyzon_marinus_69_7.0   (Sea lamprey)   20 20
Meleagris_gallopavo_69_2   (Turkey)   39 39
Gallus_gallus_69_2   (Chicken)   42 42
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   40 40
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   39 39
Anolis_carolinensis_69_2.0   (Green anole)   45 45
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   55 55
Latimeria_chalumnae_69_1   (Coelacanth)   51 51
Gadus_morhua_69_1   (Atlantic cod)   59 59
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   62 62
Takifugu_rubripes_69_4   (Torafugu)   60 60
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   60 60
Oryzias_latipes_69_1   (Japanese medaka)   55 55
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   63 63
Oreochromis_niloticus_69_1.0   (Nile tilapia)   66 66
Danio_rerio_69_9   (Zebrafish)   69 69
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   28 27
Ciona_intestinalis_69   (Vase tunicate)   29 29
Drosophila_melanogaster_69_5   (Fruit fly)   27 27
Caenorhabditis_elegans_69_215   (Roundworm)   23 23
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   16 15
Arabidopsis_thaliana_10   (Thale cress)   22 22

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   293 293
Homo_sapiens__(NCBI_version)   (Human)   105 105
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   52 52
Heliconius_numata__(Incomplete) 7 6
Loa_loa_v3.3_(Request)   (Eye worm)   22 22
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   21 21
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   20 20
Moniliophthora_perniciosa_FA553__(Genome_survey) 4 4
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   5 5
Lotus_japonicus__(Early_assembly) 16 16
Malus_x_domestica_(Duplicate)   (Apple)   35 35
Ricinus_communis__(Early_assembly)   (Castor bean)   19 19
Nicotiana_benthamiana_0.4.4_(Early_draft) 36 36
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   20 20
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   20 20
Phoenix_dactylifera__(Early_draft)   (Date palm)   8 8
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 8 7
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 2 2
NCBI_plasmid_sequences_(Plasmids) 80 78
Protozoadb_2010_08_(Protozoadb) 350 331
PDB_chains_(SCOP_1.75)_(PDB) 38 37
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 487 487
STRING_v9.0.5_(STRING) 4621 4389
Uniprot_2018_03_genome 79873 75224
NCBI_2017_08_genome 198301 177134
UniProt__viral_sequences_(Viral) 41 41
TargetDB__(Targets) 186 183
Protein_Data_Bank_(all_PDB_sequenc) 246 245
NCBI_viral_sequences_(Viral) 12 12

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