SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for TIMP-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a TIMP-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   59 59
Pan_troglodytes_76_2.1.4   (Chimpanzee)   19 19
Gorilla_gorilla_76_3.1   (Western gorilla)   30 30
Pongo_abelii_76_2   (Sumatran orangutan)   20 20
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   23 23
Papio_anubis_76   (Olive baboon)   24 24
Macaca_mulatta_76_1   (Rhesus monkey)   31 31
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   43 43
Otolemur_garnettii_76_3   (Small-eared galago)   23 23
Microcebus_murinus_76_1   (Gray mouse lemur)   20 20
Rattus_norvegicus_76_5.0   (Norway rat)   23 23
Mus_musculus_76_38   (House mouse)   28 28
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   18 18
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   21 21
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   19 19
Cavia_porcellus_76_3   (Domestic guinea pig)   23 23
Oryctolagus_cuniculus_76_2   (Rabbit)   22 22
Ochotona_princeps_76   (American pika)   17 17
Tupaia_belangeri_76   (Northern tree shrew)   15 14
Sus_scrofa_76_10.2   (Pig)   25 25
Bos_taurus_76_3.1   (Cattle)   25 25
Ovis_aries_76_3.1   (Sheep)   24 24
Vicugna_pacos_76_1   (Alpaca)   8 7
Tursiops_truncatus_76_1   (Bottlenose dolphin)   21 21
Mustela_putorius_furo_76_1.0   (Domestic ferret)   26 26
Ailuropoda_melanoleuca_76_1   (Giant panda)   26 26
Canis_familiaris_76_3.1   (Dog)   32 32
Felis_catus_76_6.2   (Domestic cat)   21 21
Equus_caballus_76_2   (Horse)   22 22
Myotis_lucifugus_76_2.0   (Little brown bat)   25 25
Pteropus_vampyrus_76_1   (Large flying fox)   19 19
Sorex_araneus_76_1   (European shrew)   10 10
Erinaceus_europaeus_76   (Western European hedgehog)   15 13
Procavia_capensis_76_1   (Cape rock hyrax)   20 18
Loxodonta_africana_76_3   (African savanna elephant)   26 26
Echinops_telfairi_76   (Small Madagascar hedgehog)   16 15
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   26 26
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   10 9
Macropus_eugenii_76_1.0   (Tammar wallaby)   18 18
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   22 22
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   27 27
Ornithorhynchus_anatinus_76_5   (Platypus)   17 17
Saccoglossus_kowalevskii_v3.0 17 17
Petromyzon_marinus_76_7.0   (Sea lamprey)   7 7
Meleagris_gallopavo_76_2   (Turkey)   23 23
Gallus_gallus_76_4   (Chicken)   25 25
Anas_platyrhynchos_76_1.0   (Mallard)   19 19
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   22 22
Ficedula_albicollis_76_1.0   (Collared flycatcher)   20 20
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   25 25
Anolis_carolinensis_76_2.0   (Green anole)   26 26
Xenopus_laevis_   (African clawed frog)   57 57
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   34 34
Latimeria_chalumnae_76_1   (Coelacanth)   31 31
Lepisosteus_oculatus_76   (Spotted gar)   35 35
Gadus_morhua_76_1   (Atlantic cod)   33 33
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   31 31
Takifugu_rubripes_76_4   (Torafugu)   92 92
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   47 47
Oryzias_latipes_76_1   (Japanese medaka)   36 36
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   28 28
Poecilia_formosa_76   (Amazon molly)   35 35
Oreochromis_niloticus_76_1.0   (Nile tilapia)   40 40
Astyanax_mexicanus_76   (Mexican tetra)   33 33
Danio_rerio_76_9   (Zebrafish)   43 43
Oikopleura_dioica 1 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   18 17
Ciona_intestinalis_76   (Vase tunicate)   13 13
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   29 27
Adineta_vaga 6 6
Octopus_bimaculoides_280 3 3
Crassostrea_gigas_22   (Pacific oyster)   27 26
Lottia_gigantea_   (Owl limpet)   7 7
Helobdella_robusta_ 3 3
Capitella_sp._I_ 3 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   2 2
Heliconius_melpomene_   (Postman butterfly)   1 1
Bombyx_mori_   (Domestic silkworm)   1 1
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2 2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2 2
Linepithema_humile_v1.1   (Argentine ant)   2 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2 2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2 2
Atta_cephalotes_v1.1 2 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2 2
Lucilia_cuprina   (Australian sheep blowfly)   3 3
Drosophila_grimshawi_1.3 4 3
Drosophila_willistoni_1.3 3 3
Drosophila_pseudoobscura_2.13 3 3
Drosophila_persimilis_1.3 3 3
Drosophila_suzukii 2 2
Drosophila_yakuba_1.3 3 3
Drosophila_simulans_1.3 3 3
Drosophila_sechellia_1.3 3 3
Drosophila_melanogaster_76_5   (Fruit fly)   9 9
Drosophila_erecta_1.3 3 3
Drosophila_ananassae_1.3 3 3
Drosophila_virilis_1.2 3 3
Drosophila_mojavensis_1.3 4 3
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   3 3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   3 3
Anopheles_darlingi_22   (American malaria mosquito)   2 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   3 3
Tribolium_castaneum_3.0   (Red flour beetle)   2 2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1 1
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Rhodnius_prolixus_22 1 1
Daphnia_pulex_   (Common water flea)   4 4
Strigamia_maritima_22 7 7
Sarcoptes_scabiei 4 4
Tetranychus_urticae_   (Two-spotted spider mite)   4 4
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   5 5
Pristionchus_pacificus_ 11 11
Meloidogyne_incognita_   (Southern root-knot nematode)   10 10
Meloidogyne_hapla_ 10 9
Onchocerca_volvulus_22 3 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   3 3
Caenorhabditis_japonica_ 3 3
Caenorhabditis_brenneri_ 4 4
Caenorhabditis_remanei_ 4 4
Caenorhabditis_elegans_76_235   (Roundworm)   6 6
Caenorhabditis_briggsae_2 4 4
Trichinella_spiralis_22 2 2
Hymenolepis_microstoma_ 3 3
Echinococcus_multilocularis_ 4 4
Echinococcus_granulosus_ 4 4
Taenia_solium_   (Pork tapeworm)   1 1
Schistosoma_mansoni_ 3 2
Mnemiopsis_leidyi   (Sea walnut)   6 6
Acropora_digitifera_v1.0 11 10
Nematostella_vectensis_1.0   (Starlet sea anemone)   16 13
Hydra_vulgaris 6 6
Trichoplax_adhaerens_ 5 5
Sphaeroforma_arctica_JP610_ 4 4
Cyanophora_paradoxa_ 4 4
Ectocarpus_siliculosus 2 2
Acaryochloris_marina_MBIC11017 1 1
Blastococcus_saxobsidens_DD2 1 1
Geodermatophilus_obscurus_DSM_43160 1 1
Streptosporangium_roseum_DSM_43021 1 1
Actinosynnema_mirum_DSM_43827 1 1
Nocardioides_sp._JS614 1 1
Gordonia_bronchialis_DSM_43247 1 1
Mycobacterium_abscessus_ATCC_19977 1 1
Sphaerobacter_thermophilus_DSM_20745 1 1
Herpetosiphon_aurantiacus_DSM_785 1 1
Brevibacillus_brevis_NBRC_100599 1 1
Bacillus_weihenstephanensis_KBAB4 1 1
Bacillus_thuringiensis_str._Al_Hakam 1 1
Bacillus_anthracis_str._A0248 1 1
Niastella_koreensis_GR20-10 1 1
Flexibacter_litoralis_DSM_6794 1 1
Marivirga_tractuosa_DSM_4126 1 1
Dyadobacter_fermentans_DSM_18053 1 1
Solitalea_canadensis_DSM_3403 1 1
Owenweeksia_hongkongensis_DSM_17368 1 1
Cellulophaga_lytica_DSM_7489 1 1
Capnocytophaga_canimorsus_Cc5 1 1
Granulicella_mallensis_MP5ACTX8 1 1
Candidatus_Koribacter_versatilis_Ellin345 1 1
Haliangium_ochraceum_DSM_14365 1 1
Hyphomonas_neptunium_ATCC_15444 1 1
Saccharophagus_degradans_2-40 1 1
Candidatus_Nitrosopumilus_sp._AR2 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   53 53
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   7 7
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   3 3
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   8 8
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   4 4
Saccharothrix_espanaensis_DSM_44229 2 2
Mycobacterium_abscessus_subsp._bolletii_50594 1 1
Thermobacillus_composti_KWC4 3 3
Paenibacillus_sp._Y412MC10 2 2
Paenibacillus_mucilaginosus_KNP414 1 1
Bacillus_toyonensis_BCT-7112 1 1
Bacillus_thuringiensis_MC28 1 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 1 1
Bacillus_thuringiensis_YBT-1518 1 1
Bacillus_thuringiensis_Bt407 1 1
Bacillus_thuringiensis_serovar_konkukian_str._97-27 1 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1 1
Bacillus_cereus_FRI-35 1 1
Bacillus_cereus_AH820 1 1
Bacillus_cereus_AH187 1 1
Bacillus_cereus_B4264 1 1
Bacillus_cereus_Q1 1 1
Bacillus_cereus_F837/76 1 1
Bacillus_cereus_NC7401 1 1
Bacillus_cereus_E33L 1 1
Bacillus_cereus_ATCC_10987 1 1
Bacillus_anthracis_str._H9401 1 1
Bacillus_anthracis_str._CDC_684 1 1
Bacillus_anthracis_str._'Ames_Ancestor' 1 1
Bacillus_anthracis_str._Sterne 1 1
Bacillus_anthracis_str._Ames 1 1
Sulfuricella_denitrificans_skB26 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 1 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   33 33
Pan_troglodytes_69_2.1.4   (Chimpanzee)   19 19
Gorilla_gorilla_69_3.1   (Western gorilla)   24 24
Pongo_abelii_69_2   (Sumatran orangutan)   20 20
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   22 22
Macaca_mulatta_69_1   (Rhesus monkey)   26 26
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   22 22
Otolemur_garnettii_69_3   (Small-eared galago)   22 22
Microcebus_murinus_69_1   (Gray mouse lemur)   20 20
Rattus_norvegicus_69_3.4   (Norway rat)   20 20
Mus_musculus_69_38   (House mouse)   21 21
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   18 18
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   21 21
Cavia_porcellus_69_3   (Domestic guinea pig)   21 21
Oryctolagus_cuniculus_69_2   (Rabbit)   20 20
Ochotona_princeps_69   (American pika)   17 17
Tupaia_belangeri_69   (Northern tree shrew)   15 14
Sus_scrofa_69_10.2   (Pig)   23 23
Bos_taurus_69_3.1   (Cattle)   24 24
Vicugna_pacos_69_1   (Alpaca)   8 7
Tursiops_truncatus_69_1   (Bottlenose dolphin)   21 21
Mustela_putorius_furo_69_1.0   (Domestic ferret)   25 25
Ailuropoda_melanoleuca_69_1   (Giant panda)   26 26
Canis_familiaris_69_3.1   (Dog)   25 25
Felis_catus_69   (Domestic cat)   11 11
Equus_caballus_69_2   (Horse)   20 20
Myotis_lucifugus_69_2.0   (Little brown bat)   25 25
Pteropus_vampyrus_69_1   (Large flying fox)   19 19
Sorex_araneus_69_1   (European shrew)   10 10
Erinaceus_europaeus_69   (Western European hedgehog)   15 13
Procavia_capensis_69_1   (Cape rock hyrax)   20 18
Loxodonta_africana_69_3   (African savanna elephant)   23 23
Echinops_telfairi_69   (Small Madagascar hedgehog)   16 15
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   12 12
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   10 9
Macropus_eugenii_69_1.0   (Tammar wallaby)   18 18
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   21 21
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   25 25
Ornithorhynchus_anatinus_69_5   (Platypus)   16 16
Petromyzon_marinus_69_7.0   (Sea lamprey)   7 7
Meleagris_gallopavo_69_2   (Turkey)   20 20
Gallus_gallus_69_2   (Chicken)   18 18
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   21 21
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   21 21
Anolis_carolinensis_69_2.0   (Green anole)   21 21
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   30 30
Latimeria_chalumnae_69_1   (Coelacanth)   28 28
Gadus_morhua_69_1   (Atlantic cod)   24 24
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   30 30
Takifugu_rubripes_69_4   (Torafugu)   33 33
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   34 34
Oryzias_latipes_69_1   (Japanese medaka)   29 29
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   28 28
Oreochromis_niloticus_69_1.0   (Nile tilapia)   33 33
Danio_rerio_69_9   (Zebrafish)   34 34
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   8 7
Ciona_intestinalis_69   (Vase tunicate)   12 12
Drosophila_melanogaster_69_5   (Fruit fly)   3 3
Caenorhabditis_elegans_69_215   (Roundworm)   4 4

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   66 66
Homo_sapiens__(NCBI_version)   (Human)   28 28
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   21 21
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   3 3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   2 2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2 2
Protein_Data_Bank_(all_PDB_sequenc) 106 106
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 207 207
STRING_v9.0.5_(STRING) 748 740
PDB_chains_(SCOP_1.75)_(PDB) 11 11
Uniprot_2018_03_genome 6632 6557
NCBI_2017_08_genome 11398 11326
TargetDB__(Targets) 21 21

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