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Domain combinations for Ricin B-like lectins superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Ricin B-like lectins domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   66 65
Pan_troglodytes_76_2.1.4   (Chimpanzee)   26 26
Gorilla_gorilla_76_3.1   (Western gorilla)   32 32
Pongo_abelii_76_2   (Sumatran orangutan)   25 25
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   29 29
Papio_anubis_76   (Olive baboon)   29 28
Macaca_mulatta_76_1   (Rhesus monkey)   35 35
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   50 50
Otolemur_garnettii_76_3   (Small-eared galago)   27 27
Microcebus_murinus_76_1   (Gray mouse lemur)   25 25
Rattus_norvegicus_76_5.0   (Norway rat)   25 25
Mus_musculus_76_38   (House mouse)   45 44
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   22 22
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   26 26
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   28 28
Cavia_porcellus_76_3   (Domestic guinea pig)   24 24
Oryctolagus_cuniculus_76_2   (Rabbit)   28 27
Ochotona_princeps_76   (American pika)   22 22
Tupaia_belangeri_76   (Northern tree shrew)   20 20
Sus_scrofa_76_10.2   (Pig)   30 30
Bos_taurus_76_3.1   (Cattle)   27 27
Ovis_aries_76_3.1   (Sheep)   30 30
Vicugna_pacos_76_1   (Alpaca)   17 17
Tursiops_truncatus_76_1   (Bottlenose dolphin)   25 25
Mustela_putorius_furo_76_1.0   (Domestic ferret)   28 27
Ailuropoda_melanoleuca_76_1   (Giant panda)   32 32
Canis_familiaris_76_3.1   (Dog)   38 38
Felis_catus_76_6.2   (Domestic cat)   27 27
Equus_caballus_76_2   (Horse)   30 30
Myotis_lucifugus_76_2.0   (Little brown bat)   29 29
Pteropus_vampyrus_76_1   (Large flying fox)   26 26
Sorex_araneus_76_1   (European shrew)   16 15
Erinaceus_europaeus_76   (Western European hedgehog)   20 19
Procavia_capensis_76_1   (Cape rock hyrax)   20 20
Loxodonta_africana_76_3   (African savanna elephant)   36 36
Echinops_telfairi_76   (Small Madagascar hedgehog)   25 25
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   24 24
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   21 19
Macropus_eugenii_76_1.0   (Tammar wallaby)   23 23
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   29 29
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   27 27
Ornithorhynchus_anatinus_76_5   (Platypus)   27 27
Saccoglossus_kowalevskii_v3.0 24 24
Petromyzon_marinus_76_7.0   (Sea lamprey)   15 15
Meleagris_gallopavo_76_2   (Turkey)   25 25
Gallus_gallus_76_4   (Chicken)   31 31
Anas_platyrhynchos_76_1.0   (Mallard)   30 30
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   26 26
Ficedula_albicollis_76_1.0   (Collared flycatcher)   29 29
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   39 39
Anolis_carolinensis_76_2.0   (Green anole)   30 30
Xenopus_laevis_   (African clawed frog)   16 16
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   28 28
Latimeria_chalumnae_76_1   (Coelacanth)   27 27
Lepisosteus_oculatus_76   (Spotted gar)   41 41
Gadus_morhua_76_1   (Atlantic cod)   32 32
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   28 28
Takifugu_rubripes_76_4   (Torafugu)   78 78
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   38 38
Oryzias_latipes_76_1   (Japanese medaka)   35 35
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   29 29
Poecilia_formosa_76   (Amazon molly)   33 33
Oreochromis_niloticus_76_1.0   (Nile tilapia)   41 41
Astyanax_mexicanus_76   (Mexican tetra)   29 29
Danio_rerio_76_9   (Zebrafish)   48 48
Oikopleura_dioica 16 16
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   17 17
Ciona_intestinalis_76   (Vase tunicate)   17 14
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   17 16
Adineta_vaga 58 57
Octopus_bimaculoides_280 17 17
Crassostrea_gigas_22   (Pacific oyster)   19 18
Lottia_gigantea_   (Owl limpet)   18 17
Helobdella_robusta_ 36 25
Capitella_sp._I_ 37 27
Danaus_plexippus_OGS1.0   (Monarch butterfly)   10 9
Heliconius_melpomene_   (Postman butterfly)   10 9
Bombyx_mori_   (Domestic silkworm)   12 12
Nasonia_vitripennis_   (Jewel wasp)   7 7
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   20 20
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   10 9
Linepithema_humile_v1.1   (Argentine ant)   10 10
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   8 8
Solenopsis_invicta_v.2.2.3   (Red fire ant)   6 6
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   9 8
Atta_cephalotes_v1.1 10 10
Camponotus_floridanus_v3.3   (Florida carpenter ant)   9 8
Lucilia_cuprina   (Australian sheep blowfly)   13 12
Drosophila_grimshawi_1.3 13 12
Drosophila_willistoni_1.3 11 11
Drosophila_pseudoobscura_2.13 11 11
Drosophila_persimilis_1.3 11 11
Drosophila_suzukii 17 13
Drosophila_yakuba_1.3 17 16
Drosophila_simulans_1.3 14 14
Drosophila_sechellia_1.3 11 11
Drosophila_melanogaster_76_5   (Fruit fly)   25 25
Drosophila_erecta_1.3 14 14
Drosophila_ananassae_1.3 14 13
Drosophila_virilis_1.2 13 12
Drosophila_mojavensis_1.3 11 11
Megaselia_scalaris_22 4 4
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   20 20
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   25 24
Anopheles_darlingi_22   (American malaria mosquito)   16 13
Anopheles_gambiae_49_3j   (African malaria mosquito)   14 14
Tribolium_castaneum_3.0   (Red flour beetle)   14 13
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   9 8
Acyrthosiphon_pisum_   (Pea aphid)   7 7
Rhodnius_prolixus_22 11 10
Daphnia_pulex_   (Common water flea)   62 50
Strigamia_maritima_22 9 8
Sarcoptes_scabiei 7 7
Tetranychus_urticae_   (Two-spotted spider mite)   10 10
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   8 8
Pristionchus_pacificus_ 8 8
Meloidogyne_incognita_   (Southern root-knot nematode)   8 7
Meloidogyne_hapla_ 5 5
Onchocerca_volvulus_22 10 10
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   12 12
Caenorhabditis_japonica_ 9 9
Caenorhabditis_brenneri_ 10 10
Caenorhabditis_remanei_ 11 10
Caenorhabditis_elegans_76_235   (Roundworm)   22 22
Caenorhabditis_briggsae_2 11 10
Trichinella_spiralis_22 6 6
Hymenolepis_microstoma_ 3 3
Echinococcus_multilocularis_ 3 3
Echinococcus_granulosus_ 3 3
Taenia_solium_   (Pork tapeworm)   4 4
Schistosoma_mansoni_ 4 4
Mnemiopsis_leidyi   (Sea walnut)   37 36
Thelohanellus_kitauei 1 1
Acropora_digitifera_v1.0 20 18
Nematostella_vectensis_1.0   (Starlet sea anemone)   17 17
Hydra_vulgaris 15 15
Amphimedon_queenslandica 6 6
Trichoplax_adhaerens_ 10 10
Proterospongia_sp._ATCC_50818_ 22 19
Monosiga_brevicollis_ 25 24
Sphaeroforma_arctica_JP610_ 14 11
Capsaspora_owczarzaki_ATCC_30864_ 2 2
Conidiobolus_coronatus_NRRL28638_v1.0 6 6
Mortierella_verticillata_NRRL_6337_ 24 17
Phycomyces_blakesleeanus_ 24 14
Rhizopus_oryzae_RA_99-880_ 36 19
Mucor_circinelloides_ 27 13
Rhizomucor_miehei_CAU432_ 15 9
Mixia_osmundae_IAM_14324_v1.0 1 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 2 2
Microbotryum_violaceum_22 1 1
Wallemia_sebi_v1.0 1 1
Sphaerobolus_stellatus_v1.0 64 53
Piloderma_croceum_F_1598_v1.0 25 25
Serpula_lacrymans_var._lacrymans_S7.9_ 10 10
Coniophora_puteana 9 9
Hydnomerulius_pinastri_v2.0 13 13
Paxillus_rubicundulus_Ve08.2h10_v1.0 4 4
Pisolithus_microcarpus_441_v1.0 19 14
Pisolithus_tinctorius_Marx_270_v1.0 7 7
Scleroderma_citrinum_Foug_A_v1.0 18 18
Coprinopsis_cinerea_okayama7_130_v3 41 29
Pleurotus_ostreatus_   (Oyster mushroom)   25 25
Amanita_thiersii_Skay4041_v1.0 30 30
Amanita_muscaria_Koide_v1.0   (Fly agaric)   10 9
Galerina_marginata_v1.0 45 38
Hebeloma_cylindrosporum_h7_v2.0 18 17
Laccaria_bicolor_S238N-H82_ 20 20
Agaricus_bisporus_var._bisporus_ 28 27
Schizophyllum_commune_ 14 13
Stereum_hirsutum_FP-91666_SS1__v1.0 17 11
Heterobasidion_annosum_ 6 6
Gloeophyllum_trabeumv1.0 6 6
Punctularia_strigosozonata_v1.0 11 9
Sebacina_vermifera_MAFF_305830_v1.0 8 8
Fomitiporia_mediterranea_v1.0 12 12
Tulasnella_calospora_AL13/4D_v1.0 37 31
Postia_placenta_ 32 31
Wolfiporia_cocos_MD-104_SS10__v1.0 12 12
Fomitopsis_pinicolav1.0 12 12
Fomitopsis_pinicola_FP-58527_SS1_v3.0 12 12
Phanerochaete_chrysosporium_RP-78_2.1 9 9
Dichomitus_squalens 15 14
Trametes_versicolor_v1.0 11 10
Tremella_mesenterica_   (Witches' butter)   26 17
Daldinia_eschscholzii_EC12_v1.0 3 2
Apiospora_montagnei_NRRL_25634_v1.0 2 2
Magnaporthe_poae_ATCC_64411_22 4 3
Magnaporthe_grisea_70-15_ 4 3
Podospora_anserina_ 3 2
Sporotrichum_thermophile_ATCC_42464_ 3 2
Thielavia_terrestris_NRRL_8126_ 4 3
Chaetomium_globosum_CBS_148.51_ 3 2
Neurospora_tetrasperma_ 2 2
Neurospora_discreta_FGSC_8579_ 1 1
Neurospora_crassa_OR74A_ 2 2
Cryphonectria_parasitica_   (Chestnut blight fungus)   2 2
Verticillium_albo-atrum_VaMs.102_ 1 1
Verticillium_dahliae_VdLs.17_ 2 1
Acremonium_alcalophilumv_1.0 2 2
Glomerella_graminicola_22 3 2
Fusarium_graminearum_ 5 5
Nectria_haematococca_mpVI_ 3 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3 3
Fusarium_verticillioides_7600_ 5 5
Trichoderma_asperellum_CBS_433.97_v1.0 7 6
Trichoderma_atroviride_ 8 7
Trichoderma_citrinoviride_v1.0 5 4
Trichoderma_reesei_1.2 6 5
Trichoderma_virens_Gv29-8_ 12 11
Trichoderma_longibrachiatum_ATCC_18648_v1.0 6 5
Trichoderma_harzianum_CBS_226.95_v1.0 11 10
Amorphotheca_resinae_v1.0   (Creosote fungus)   2 2
Botrytis_cinerea_B05.10_ 3 3
Sclerotinia_sclerotiorum_ 5 4
Didymella_exigua_CBS_183.55_v1.0 2 2
Leptosphaeria_maculans_22 1 1
Setosphaeria_turcica_v1.0 3 3
Cochliobolus_miyabeanus_ATCC_44560_v1.0 3 3
Cochliobolus_victoriae_FI3_v1.0 2 2
Cochliobolus_carbonum_26-R-13_v1.0 2 2
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2 2
Alternaria_brassicicola_ 2 2
Cochliobolus_lunatus_m118_v2.0 4 4
Pyrenophora_teres_f._teres_22 3 3
Pyrenophora_tritici-repentis_ 2 2
Stagonospora_nodorum_ 2 2
Zasmidium_cellare_ATCC_36951_v1.0 3 3
Dothistroma_septosporum 2 2
Septoria_musiva_v1.0 1 1
Mycosphaerella_fijiensis_CIRAD86_ 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Microsporum_canis_CBS_113480_ 1 1
Aspergillus_zonatus_v1.0 4 4
Penicillium_chrysogenum_Wisconsin_54-1255_ 3 3
Penicillium_chrysogenum_v1.0 4 4
Aspergillus_acidus_v1.0 1 1
Aspergillus_fumigatus_Af293 1 1
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_sydowii_v1.0 3 3
Aspergillus_versicolor_v1.0 2 2
Aspergillus_glaucus 2 2
Aspergillus_carbonarius_ITEM_5010_ 1 1
Neosartorya_fischeri_NRRL_181_ 1 1
Aspergillus_terreus_NIH2624_ 2 2
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 2 2
Aspergillus_oryzae_RIB40_ 5 5
Aspergillus_niger_22 1 1
Aspergillus_niger_ATCC_1015_ 1 1
Aspergillus_flavus_NRRL3357_ 4 4
Aspergillus_clavatus_NRRL_1_ 1 1
Catenaria_anguillulae_PL171_v1.0 27 23
Allomyces_macrogynus_ATCC_38327_ 5 3
Spizellomyces_punctatus_DAOM_BR117_ 2 2
Dictyostelium_discoideum 20 12
Dictyostelium_purpureum_ 3 3
Entamoeba_dispar_1.2 8 8
Entamoeba_invadens_1.2 4 4
Entamoeba_histolytica_1 8 8
Selaginella_moellendorffii_ 29 22
Pinus_taeda   (Loblolly pine)   32 27
Picea_abies   (Norway spruce)   9 8
Eucalyptus_grandis_v201   (Rose gum)   12 12
Theobroma_cacao_B97-61/B2_v1   (Cacao)   3 3
Gossypium_raimondii_v221 15 11
Citrus_clementina_v165 5 5
Citrus_sinensis_v154   (Sweet orange)   9 9
Thellungiella_halophila_v173 5 5
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   5 5
Capsella_rubella_v183 3 3
Arabidopsis_lyrata_   (Lyrate rockcress)   5 5
Arabidopsis_thaliana_10   (Thale cress)   3 3
Carica_papaya_   (Papaya)   5 5
Medicago_truncatula_   (Barrel medic)   15 15
Phaseolus_vulgaris_v186   (French bean)   9 9
Glycine_max_v109   (Soybean)   18 16
Cucumis_sativus_v122   (Cucumber)   15 13
Fragaria_vesca_   (Wild strawberry)   2 2
Malus_domestica_v196   (Apple)   13 10
Prunus_persica_v139   (Peach)   3 3
Linum_usitatissimum_v200   (Flax)   7 7
Manihot_esculenta_v147   (Cassava)   3 3
Populus_trichocarpa_v156   (Black cottonwood)   17 14
Vitis_vinifera_   (Wine grape)   8 8
Mimulus_guttatus_v140   (Spotted monkey flower)   6 6
Solanum_lycopersicum_v.2.3   (Tomato)   3 3
Solanum_tuberosum_   (Potato)   6 6
Actinidia_chinensis_Hongyang_ 8 8
Aquilegia_coerulea_v195 14 14
Triticum_urartu_22 14 10
Triticum_aestivum_22   (Bread wheat)   43 36
Aegilops_tauschii_22 16 11
Brachypodium_distachyon_   (Stiff brome)   23 18
Oryza_barthii_22   (African wild rice)   30 10
Oryza_meridionalis_22 22 12
Oryza_glumaepatula_22 27 11
Oryza_glaberrima   (African rice)   11 9
Oryza_punctata_22 22 11
Oryza_nivara_22 19 11
Oryza_brachyantha_22   (Malo sina)   10 7
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   21 15
Oryza_sativa_v193   (Rice)   21 15
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   18 13
Panicum_virgatum_v202   (Switchgrass)   41 32
Setaria_italica_v164   (Foxtail millet)   18 12
Zea_mays_subsp._mays_   (Maize)   29 23
Zea_mays_v181   (Maize)   26 20
Sorghum_bicolor_   (Sorghum)   16 12
Musa_balbisiana   (Balbis banana)   11 9
Musa_acuminata_22   (Wild Malaysian banana)   10 10
Amborella_trichopoda_22 4 4
Physcomitrella_patens 6 5
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Volvox_carteri_f._nagariensis_ 10 8
Volvox_carteri_v199 10 7
Chlamydomonas_reinhardtii_4.0 5 4
Thecamonas_trahens_ATCC_50062_ 1 1
Bigelowiella_natans_CCMP2755_22 13 8
Cyanophora_paradoxa_ 2 2
Ectocarpus_siliculosus 2 1
Aureococcus_anophagefferens_ 10 8
Albugo_laibachii_22 1 1
Pythium_iwayamai_DAOM_BR242034_22 20 9
Pythium_arrhenomanes_ATCC_12531_22 17 10
Pythium_ultimum_v1.7-2 9 5
Pythium_aphanidermatum_DAOM_BR444_22 15 10
Pythium_irregulare_DAOM_BR486_22 6 3
Pythium_vexans_DAOM_BR484_22 10 7
Phytophthora_ramorum_1.1   (Sudden oak death agent)   21 11
Phytophthora_sojae_1.1 34 12
Phytophthora_infestans_T30-4_ 17 8
Phytophthora_capsici_ 14 11
Hyaloperonospora_arabidopsidis_22 3 3
Phaeodactylum_tricornutumCCAP_1055/1 10 7
Fragilariopsis_cylindrus 2 2
Thalassiosira_pseudonana_CCMP1335 5 5
Perkinsus_marinus_ATCC_50983_ 19 14
Paramecium_tetraurelia_ 6 4
Tetrahymena_thermophila_SB210_1_ 6 5
Ichthyophthirius_multifiliis_strain_G5_ 2 2
Cryptosporidium_hominis 5 5
Cryptosporidium_muris 7 7
Cryptosporidium_parvum_Iowa_II 6 6
Neospora_caninum 4 4
Toxoplasma_gondii_VEG 7 7
Toxoplasma_gondii_ME49 6 6
Toxoplasma_gondii_GT1 6 6
Babesia_bovis_T2Bo_ 4 4
Theileria_parva__ 2 2
Theileria_annulata 2 2
Plasmodium_falciparum_3D7_ 2 2
Plasmodium_vivax_SaI-1_7.0 3 3
Plasmodium_knowlesi_strain_H_ 3 3
Plasmodium_yoelii_ssp._yoelii_1_ 3 3
Plasmodium_chabaudi_ 2 2
Plasmodium_berghei_ANKA_ 2 2
Symbiodinium_minutum_clade_B1_v1.2 49 39
Naegleria_gruberi_ 4 4
Trichomonas_vaginalis_ 13 13
Guillardia_theta_CCMP2712_v1.0_ 4 4
Emiliania_huxleyi_CCMP1516_ 5 5
Microcoleus_sp._PCC_7113 2 2
Microcystis_aeruginosa_NIES-843 1 1
Rivularia_sp._PCC_7116 3 3
Calothrix_sp._PCC_7507 3 3
Nostoc_sp._PCC_7524 1 1
Anabaena_sp._90 2 2
Conexibacter_woesei_DSM_14684 1 1
Eggerthella_sp._YY7918 8 2
Eggerthella_lenta_DSM_2243 1 1
Thermobispora_bispora_DSM_43833 2 2
Nakamurella_multipartita_DSM_44233 1 1
Modestobacter_marinus 1 1
Catenulispora_acidiphila_DSM_44928 87 79
Stackebrandtia_nassauensis_DSM_44728 9 8
Frankia_sp._EAN1pec 1 1
Frankia_alni_ACN14a 7 7
Thermobifida_fusca_YX 1 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 4 4
Thermomonospora_curvata_DSM_43183 1 1
Streptosporangium_roseum_DSM_43021 16 13
Kitasatospora_setae_KM-6054 15 15
Streptomyces_coelicolor_A3(2) 17 17
Streptomyces_sp._PAMC26508 12 12
Streptomyces_flavogriseus_ATCC_33331 11 11
Streptomyces_sp._SirexAA-E 8 7
Streptomyces_griseus_subsp._griseus_NBRC_13350 14 14
Streptomyces_bingchenggensis_BCW-1 24 21
Streptomyces_violaceusniger_Tu_4113 7 7
Streptomyces_avermitilis_MA-4680 12 12
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 12 11
Streptomyces_scabiei_87.22 43 42
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 28 27
Actinosynnema_mirum_DSM_43827 32 31
Saccharopolyspora_erythraea_NRRL_2338 1 1
Amycolatopsis_mediterranei_U32 55 54
Kribbella_flavida_DSM_17836 12 11
Salinispora_arenicola_CNS-205 4 4
Salinispora_tropica_CNB-440 3 3
Verrucosispora_maris_AB-18-032 28 27
Micromonospora_sp._L5 24 22
Micromonospora_aurantiaca_ATCC_27029 23 22
Actinoplanes_sp._N902-109 36 32
Actinoplanes_sp._SE50/110 46 40
Actinoplanes_missouriensis_431 31 28
Gordonia_polyisoprenivorans_VH2 1 1
Mycobacterium_canettii_CIPT_140010059 1 1
Mycobacterium_africanum_GM041182 1 1
Mycobacterium_tuberculosis_KZN_1435 1 1
Mycobacterium_tuberculosis 1 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1 1
Mycobacterium_ulcerans_Agy99 1 1
Mycobacterium_marinum_M 1 1
Sanguibacter_keddieii_DSM_10542 2 2
Microbacterium_testaceum_StLB037 7 6
Jonesia_denitrificans_DSM_20603 3 3
Brachybacterium_faecium_DSM_4810 1 1
Cellulomonas_flavigena_DSM_20109 7 7
Cellulomonas_fimi_ATCC_484 10 10
[Cellvibrio]_gilvus_ATCC_13127 4 4
Arthrobacter_chlorophenolicus_A6 1 1
Arthrobacter_aurescens_TC1 1 1
Arthrobacter_sp._Rue61a 1 1
Renibacterium_salmoninarum_ATCC_33209 6 6
Bifidobacterium_longum_subsp._longum_JDM301 1 1
Bifidobacterium_bifidum_S17 5 3
Arcanobacterium_haemolyticum_DSM_20595 1 1
Herpetosiphon_aurantiacus_DSM_785 4 3
Deinococcus_deserti_VCD115 1 1
Clostridium_clariflavum_DSM_19732 1 1
Clostridium_cellulolyticum_H10 3 3
Clostridium_thermocellum_ATCC_27405 2 2
Faecalibacterium_prausnitzii 2 2
Ruminococcus_bromii 1 1
Ruminococcus_albus_7 13 9
butyrate-producing_bacterium_SM4/1 1 1
Eubacterium_limosum_KIST612 1 1
Clostridium_phytofermentans_ISDg 2 2
Clostridium_lentocellum_DSM_5427 6 6
[Ruminococcus]_torques 2 1
Eubacterium_rectale_M104/1 3 1
Butyrivibrio_proteoclasticus_B316 3 3
Butyrivibrio_fibrisolvens 4 4
Clostridium_sp._BNL1100 2 2
Clostridium_perfringens_ATCC_13124 1 1
Clostridium_cellulovorans_743B 4 4
Clostridium_botulinum_A_str._ATCC_3502 3 2
Clostridium_acetobutylicum_ATCC_824 7 6
Caldicellulosiruptor_obsidiansis_OB47 1 1
Caldicellulosiruptor_kronotskyensis_2002 1 1
Caldicellulosiruptor_hydrothermalis_108 5 2
Caldicellulosiruptor_owensensis_OL 1 1
Streptococcus_gallolyticus_UCN34 2 2
Paenibacillus_sp._JDR-2 8 4
Paenibacillus_terrae_HPL-003 1 1
Paenibacillus_mucilaginosus_3016 6 6
Paenibacillus_polymyxa_M1 3 3
Lysinibacillus_sphaericus_C3-41 2 2
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Pelodictyon_phaeoclathratiforme_BU-1 1 1
Chlorobium_phaeobacteroides_DSM_266 1 1
Haliscomenobacter_hydrossis_DSM_1100 7 7
Niastella_koreensis_GR20-10 4 4
Chitinophaga_pinensis_DSM_2588 14 14
Fibrella_aestuarina 2 1
Dyadobacter_fermentans_DSM_18053 1 1
Spirosoma_linguale_DSM_74 2 2
Runella_slithyformis_DSM_19594 1 1
Paludibacter_propionicigenes_WB4 2 2
Prevotella_melaninogenica_ATCC_25845 1 1
Prevotella_ruminicola_23 1 1
Bacteroides_thetaiotaomicron_VPI-5482 2 2
Bacteroides_fragilis_YCH46 1 1
Pedobacter_heparinus_DSM_2366 1 1
Sphingobacterium_sp._21 1 1
Zunongwangia_profunda_SM-A87 1 1
Aequorivita_sublithincola_DSM_14238 1 1
Zobellia_galactanivorans 1 1
Cellulophaga_lytica_DSM_7489 1 1
Flavobacterium_johnsoniae_UW101 6 6
Fibrobacter_succinogenes_subsp._succinogenes_S85 5 5
Rhodopirellula_baltica_SH_1 1 1
Opitutus_terrae_PB90-1 1 1
Spirochaeta_smaragdinae_DSM_11293 1 1
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Granulicella_tundricola_MP5ACTX9 3 2
Granulicella_mallensis_MP5ACTX8 9 8
Terriglobus_saanensis_SP1PR4 1 1
Terriglobus_roseus_DSM_18391 1 1
Acidobacterium_capsulatum_ATCC_51196 1 1
Campylobacter_lari_RM2100 2 2
Campylobacter_sp._03-427 4 4
Campylobacter_fetus_subsp._fetus_82-40 6 6
Helicobacter_hepaticus_ATCC_51449 2 2
Helicobacter_cinaedi_PAGU611 2 2
Geobacter_uraniireducens_Rf4 1 1
Haliangium_ochraceum_DSM_14365 1 1
Sorangium_cellulosum_'So_ce_56' 9 9
Stigmatella_aurantiaca_DW4/3-1 17 15
Corallococcus_coralloides_DSM_2259 10 9
Myxococcus_xanthus_DK_1622 2 2
Myxococcus_fulvus_HW-1 3 3
Aromatoleum_aromaticum_EbN1 1 1
Laribacter_hongkongensis_HLHK9 1 1
Chromobacterium_violaceum_ATCC_12472 3 3
Burkholderia_phytofirmans_PsJN 1 1
Burkholderia_phymatum_STM815 1 1
Burkholderia_xenovorans_LB400 1 1
Burkholderia_sp._RPE64 2 2
Burkholderia_sp._CCGE1002 1 1
Burkholderia_thailandensis_E264 2 1
Burkholderia_pseudomallei_1106a 4 2
Burkholderia_mallei_SAVP1 4 2
Burkholderia_ambifaria_AMMD 2 2
Burkholderia_glumae_BGR1 2 2
Delftia_sp._Cs1-4 1 1
Delftia_acidovorans_SPH-1 1 1
Variovorax_paradoxus_S110 1 1
Acidovorax_sp._KKS102 1 1
Collimonas_fungivorans_Ter331 3 2
Caulobacter_sp._K31 1 1
Sphingomonas_wittichii_RW1 1 1
Tistrella_mobilis_KA081020-065 1 1
Candidatus_Pelagibacter_sp._IMCC9063 1 1
Xanthobacter_autotrophicus_Py2 1 1
Methylobacterium_chloromethanicum_CM4 1 1
Methylobacterium_extorquens_AM1 2 1
Methylobacterium_sp._4-46 2 1
Bradyrhizobium_sp._ORS_278 1 1
Saccharophagus_degradans_2-40 13 10
Teredinibacter_turnerae_T7901 9 8
Cellvibrio_japonicus_Ueda107 6 4
Aggregatibacter_actinomycetemcomitans_D7S-1 2 2
Haemophilus_parasuis_SH0165 4 4
Haemophilus_ducreyi_35000HP 3 3
Actinobacillus_pleuropneumoniae_serovar_5b_str._L20 1 1
Aeromonas_veronii_B565 1 1
Aeromonas_salmonicida_subsp._salmonicida_A449 2 2
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 2 2
Vibrio_harveyi_ATCC_BAA-1116 1 1
Vibrio_anguillarum_775 1 1
Vibrio_furnissii_NCTC_11218 1 1
Vibrio_vulnificus_MO6-24/O 1 1
Vibrio_cholerae_O395 1 1
Photobacterium_profundum_SS9 1 1
Ferrimonas_balearica_DSM_9799 6 2
Shewanella_baltica_OS185 1 1
Shewanella_sp._MR-4 2 1
Shewanella_putrefaciens_CN-32 2 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1 1
Alteromonas_sp._SN2 1 1
Hahella_chejuensis_KCTC_2396 11 10
Marinomonas_mediterranea_MMB-1 1 1
gamma_proteobacterium_HdN1 1 1
Pectobacterium_wasabiae_WPP163 2 2
Pectobacterium_sp._SCC3193 2 2
Pectobacterium_atrosepticum_SCRI1043 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1 1
Salmonella_bongori_NCTC_12419 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1 1
Pseudomonas_syringae_pv._tomato_str._DC3000 3 1
Pseudomonas_putida_F1 1 1
Methanohalobium_evestigatum_Z-7303 1 1
Halopiger_xanaduensis_SH-6 3 3
Haloterrigena_turkmenica_DSM_5511 6 6
Halomicrobium_mukohataei_DSM_12286 1 1
Halorhabdus_utahensis_DSM_12940 3 3
Haloarcula_marismortui_ATCC_43049 2 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   42 42
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   25 25
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   15 15
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   10 10
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   15 15
Cryptococcus_neoformans_var._grubii_H99_ 5 5
Cryptococcus_neoformans_B-3501A_ 5 5
Cryptococcus_neoformans_JEC21_ 5 5
Batrachochytrium_dendrobatidis_JEL423_ 3 2
Batrachochytrium_dendrobatidis_JAM81_ 1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   3 3
Hordeum_vulgare_22   (Domesticated barley)   21 17
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   17 12
Neospora_caninum_Nc-Liverpool_6.2 4 4
Plasmodium_falciparum_HB3_ 2 2
Plasmodium_falciparum_Dd2_ 2 2
Chamaesiphon_minutus_PCC_6605 1 1
Cyanobium_gracile_PCC_6307 1 1
Crinalium_epipsammum_PCC_9333 1 1
Cyanothece_sp._PCC_7822 1 1
Cyanothece_sp._ATCC_51142 1 1
Frankia_sp._CcI3 1 1
Nocardiopsis_alba_ATCC_BAA-2165 1 1
Streptomyces_albus_J1074 7 7
Streptomyces_rapamycinicus_NRRL_5491 9 9
Streptomyces_davawensis_JCM_4913 39 39
Streptomyces_fulvissimus_DSM_40593 15 15
Streptomyces_venezuelae_ATCC_10712 17 15
Streptomyces_collinus_Tu_365 15 14
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 12 11
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 23 22
Saccharothrix_espanaensis_DSM_44229 23 22
Amycolatopsis_mediterranei_RB 54 53
Amycolatopsis_mediterranei_S699 55 54
Amycolatopsis_mediterranei_S699 55 54
Amycolatopsis_orientalis_HCCB10007 12 10
Actinoplanes_friuliensis_DSM_7358 52 50
Nocardia_brasiliensis_ATCC_700358 2 2
Mycobacterium_liflandii_128FXT 1 1
Mycobacterium_canettii_CIPT_140070017 1 1
Mycobacterium_canettii_CIPT_140060008 1 1
Mycobacterium_canettii_CIPT_140070008 1 1
Mycobacterium_canettii_CIPT_140070010 1 1
Mycobacterium_tuberculosis_EAI5/NITR206 1 1
Mycobacterium_tuberculosis_EAI5 1 1
Mycobacterium_tuberculosis_CAS/NITR204 1 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 1 1
Mycobacterium_tuberculosis_UT205 1 1
Mycobacterium_tuberculosis_RGTB423 1 1
Mycobacterium_tuberculosis_RGTB327 1 1
Mycobacterium_tuberculosis_CTRI-2 1 1
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 1 1
Mycobacterium_tuberculosis_KZN_605 1 1
Mycobacterium_tuberculosis_KZN_4207 1 1
Mycobacterium_tuberculosis_CCDC5180 1 1
Mycobacterium_tuberculosis_CCDC5079 1 1
Mycobacterium_tuberculosis_CCDC5079 1 1
Mycobacterium_tuberculosis_H37Ra 1 1
Mycobacterium_tuberculosis_str._Haarlem/NITR202 1 1
Mycobacterium_tuberculosis_str._Haarlem 1 1
Mycobacterium_tuberculosis_F11 1 1
Mycobacterium_tuberculosis_H37Rv 1 1
Mycobacterium_tuberculosis_CDC1551 1 1
Mycobacterium_bovis_AF2122/97 1 1
Mycobacterium_bovis_BCG_str._Korea_1168P 1 1
Mycobacterium_bovis_BCG_str._Mexico 1 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1 1
Mycobacterium_kansasii_ATCC_12478 1 1
Leifsonia_xyli_subsp._cynodontis_DSM_46306 3 1
Bifidobacterium_longum_NCC2705 1 1
Bifidobacterium_longum_DJO10A 1 1
Bifidobacterium_longum_subsp._infantis_157F 1 1
Bifidobacterium_longum_subsp._longum_KACC_91563 1 1
Bifidobacterium_longum_subsp._longum_BBMN68 1 1
Bifidobacterium_longum_subsp._longum_JCM_1217 1 1
Bifidobacterium_bifidum_PRL2010 4 2
Bifidobacterium_bifidum_BGN4 4 2
Actinomyces_graevenitzii_C83_ 1 1
Actinomyces_odontolyticus_ATCC_17982 1 1
Eubacterium_siraeum_V10Sc8a 1 1
Clostridium_thermocellum_DSM_1313 2 2
Faecalibacterium_prausnitzii_L2-6 2 2
Ruminococcus_champanellensis_18P13 9 6
Desulfitobacterium_hafniense_DCB-2 1 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1 1
Coprococcus_catus_GD/7 4 2
Clostridium_saccharobutylicum_DSM_13864 3 3
Clostridium_botulinum_H04402_065 3 2
Clostridium_botulinum_BKT015925 3 2
Clostridium_botulinum_B1_str._Okra 3 2
Clostridium_botulinum_Ba4_str._657 3 2
Clostridium_botulinum_A_str._Hall 3 2
Clostridium_botulinum_A_str._ATCC_19397 3 2
Clostridium_acetobutylicum_DSM_1731 7 6
Clostridium_acetobutylicum_EA_2018 7 6
Enterococcus_mundtii_QU_25 5 5
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 2 2
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 2 2
Streptococcus_mutans_LJ23 2 1
Thermobacillus_composti_KWC4 1 1
Paenibacillus_sp._Y412MC10 3 3
Paenibacillus_mucilaginosus_KNP414 6 6
Paenibacillus_mucilaginosus_K02 6 6
Paenibacillus_larvae_subsp._larvae_DSM_25430 1 1
Paenibacillus_polymyxa_CR1 2 2
Paenibacillus_polymyxa_SC2 3 3
Paenibacillus_polymyxa_E681 1 1
Bacillus_licheniformis_9945A 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_thuringiensis_HD-789 3 2
Bacillus_thuringiensis_MC28 10 9
Bacillus_cereus_Q1 1 1
Prevotella_dentalis_DSM_3688 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 5 5
Campylobacter_jejuni_Waterborne_C.jejuni_Outbreak 2 2
Campylobacter_jejuni_RM1221 2 2
Campylobacter_jejuni_subsp._jejuni_00-2544 2 2
Campylobacter_jejuni_subsp._jejuni_00-2538 2 2
Campylobacter_jejuni_subsp._jejuni_00-2426 2 2
Campylobacter_jejuni_subsp._jejuni_00-2425 2 2
Campylobacter_jejuni_subsp._jejuni_PT14 2 2
Campylobacter_jejuni_subsp._jejuni_ICDCCJ07001 2 2
Campylobacter_jejuni_subsp._jejuni_S3 2 2
Campylobacter_jejuni_subsp._jejuni_M1 2 2
Campylobacter_jejuni_subsp._jejuni_IA3902 2 2
Campylobacter_jejuni_subsp._jejuni_81116 2 2
Campylobacter_jejuni_subsp._jejuni_81-176 2 2
Campylobacter_jejuni_subsp._jejuni_NCTC_11168-BN148 2 2
Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 2 2
Campylobacter_coli_76339 2 2
Campylobacter_coli_15-537360 1 1
Campylobacter_coli_CVM_N29710 2 2
Sorangium_cellulosum_So0157-2 14 13
Myxococcus_stipitatus_DSM_14675 5 5
Burkholderia_phenoliruptrix_BR3459a 1 1
Burkholderia_sp._YI23 2 2
Burkholderia_sp._CCGE1003 1 1
Burkholderia_sp._CCGE1001 1 1
Burkholderia_sp._KJ006 1 1
Burkholderia_pseudomallei_MSHR305 4 2
Burkholderia_pseudomallei_NCTC_13179 4 2
Burkholderia_pseudomallei_BPC006 4 2
Burkholderia_pseudomallei_1026b 4 2
Burkholderia_pseudomallei_MSHR346 3 2
Burkholderia_pseudomallei_668 4 2
Burkholderia_pseudomallei_1710b 4 2
Burkholderia_pseudomallei_K96243 4 2
Burkholderia_mallei_NCTC_10229 4 2
Burkholderia_mallei_NCTC_10247 4 2
Burkholderia_mallei_ATCC_23344 4 2
Burkholderia_ambifaria_MC40-6 1 1
Variovorax_paradoxus_B4 1 1
Variovorax_paradoxus_EPS 3 3
Rhizobium_etli_CFN_42 1 1
Rhodopseudomonas_palustris_HaA2 1 1
Bradyrhizobium_oligotrophicum_S58 3 3
Simiduia_agarivorans_SA1_=_DSM_21679 3 3
Aggregatibacter_actinomycetemcomitans_ANH9381 2 2
Aggregatibacter_actinomycetemcomitans_D11S-1 2 2
Haemophilus_parasuis_ZJ0906 4 4
Actinobacillus_suis_H91-0380 1 1
Actinobacillus_pleuropneumoniae_serovar_3_str._JL03 1 1
Actinobacillus_pleuropneumoniae_serovar_7_str._AP76 1 1
Aeromonas_hydrophila_ML09-119 2 2
Vibrio_sp._EJY3 1 1
Vibrio_anguillarum_Listonella_anguillarum_M3 1 1
Vibrio_nigripulchritudo_VibrioScope 1 1
Vibrio_vulnificus_CMCP6 1 1
Vibrio_vulnificus_YJ016 1 1
Vibrio_cholerae_LMA3984-4 1 1
Vibrio_cholerae_M66-2 1 1
Vibrio_cholerae_O395 1 1
Vibrio_cholerae_IEC224 1 1
Vibrio_cholerae_O1_str._2010EL-1786 1 1
Vibrio_cholerae_MJ-1236 1 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1 1
Shewanella_sp._W3-18-1 2 1
Shewanella_sp._ANA-3 2 1
Shewanella_baltica_OS678 1 1
Shewanella_baltica_OS223 2 1
Shewanella_baltica_OS195 1 1
Shewanella_sp._MR-7 2 1
Shewanella_putrefaciens_200 2 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1 1
Stenotrophomonas_maltophilia_JV3 2 1
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 2 2
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1 1
Salmonella_bongori_N268-08 1 1
Salmonella_enterica_subsp._arizonae_serovar_62:z4,z23:--_str._RSK2980 3 3
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1 1
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 1 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 1 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 1 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 1 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._B182 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 1 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1 1
Escherichia_coli_IHE3034 2 2
Escherichia_coli_APEC_O1 2 2
Pseudomonas_syringae_pv._syringae_B728a 2 1
Pseudomonas_putida_BIRD-1 1 1
Pseudomonas_putida_ND6 1 1
Pseudomonas_fluorescens_F113 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_M18 1 1
Acinetobacter_junii__SH205 1 1
Acinetobacter_johnsonii__SH046 1 1
Methanolobus_psychrophilus_R15 1 1
Halorhabdus_tiamatea_SARL4B 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   33 33
Pan_troglodytes_69_2.1.4   (Chimpanzee)   25 25
Gorilla_gorilla_69_3.1   (Western gorilla)   27 27
Pongo_abelii_69_2   (Sumatran orangutan)   25 25
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   26 26
Macaca_mulatta_69_1   (Rhesus monkey)   26 26
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   25 25
Otolemur_garnettii_69_3   (Small-eared galago)   26 26
Microcebus_murinus_69_1   (Gray mouse lemur)   25 25
Rattus_norvegicus_69_3.4   (Norway rat)   26 26
Mus_musculus_69_38   (House mouse)   30 29
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   22 22
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   24 24
Cavia_porcellus_69_3   (Domestic guinea pig)   23 23
Oryctolagus_cuniculus_69_2   (Rabbit)   28 28
Ochotona_princeps_69   (American pika)   22 22
Tupaia_belangeri_69   (Northern tree shrew)   20 20
Sus_scrofa_69_10.2   (Pig)   26 26
Bos_taurus_69_3.1   (Cattle)   27 27
Vicugna_pacos_69_1   (Alpaca)   17 17
Tursiops_truncatus_69_1   (Bottlenose dolphin)   25 25
Mustela_putorius_furo_69_1.0   (Domestic ferret)   28 27
Ailuropoda_melanoleuca_69_1   (Giant panda)   27 27
Canis_familiaris_69_3.1   (Dog)   27 27
Felis_catus_69   (Domestic cat)   22 21
Equus_caballus_69_2   (Horse)   28 28
Myotis_lucifugus_69_2.0   (Little brown bat)   27 27
Pteropus_vampyrus_69_1   (Large flying fox)   26 26
Sorex_araneus_69_1   (European shrew)   16 15
Erinaceus_europaeus_69   (Western European hedgehog)   20 19
Procavia_capensis_69_1   (Cape rock hyrax)   20 20
Loxodonta_africana_69_3   (African savanna elephant)   25 25
Echinops_telfairi_69   (Small Madagascar hedgehog)   25 25
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   21 20
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   21 19
Macropus_eugenii_69_1.0   (Tammar wallaby)   23 23
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   24 24
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   27 27
Ornithorhynchus_anatinus_69_5   (Platypus)   24 24
Petromyzon_marinus_69_7.0   (Sea lamprey)   15 15
Meleagris_gallopavo_69_2   (Turkey)   23 23
Gallus_gallus_69_2   (Chicken)   27 27
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   25 25
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   31 31
Anolis_carolinensis_69_2.0   (Green anole)   26 26
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   24 24
Latimeria_chalumnae_69_1   (Coelacanth)   25 25
Gadus_morhua_69_1   (Atlantic cod)   31 31
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   28 28
Takifugu_rubripes_69_4   (Torafugu)   27 27
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   29 29
Oryzias_latipes_69_1   (Japanese medaka)   26 26
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   29 29
Oreochromis_niloticus_69_1.0   (Nile tilapia)   34 34
Danio_rerio_69_9   (Zebrafish)   31 31
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   10 10
Ciona_intestinalis_69   (Vase tunicate)   17 14
Drosophila_melanogaster_69_5   (Fruit fly)   15 15
Caenorhabditis_elegans_69_215   (Roundworm)   9 9
Arabidopsis_thaliana_10   (Thale cress)   3 3

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   81 80
Homo_sapiens__(NCBI_version)   (Human)   38 38
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   27 26
Loa_loa_v3.3_(Request)   (Eye worm)   12 12
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   9 9
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   9 9
Moniliophthora_perniciosa_FA553__(Genome_survey) 4 4
Encephalitozoon_intestinalis__(endoparasite) 2 2
Encephalitozoon_cuniculi_(endoparasite) 4 4
Picea_sitchensis__(Incomplete)   (Sitka spruce)   10 8
Lotus_japonicus__(Early_assembly) 3 3
Malus_x_domestica_(Duplicate)   (Apple)   13 10
Ricinus_communis__(Early_assembly)   (Castor bean)   35 23
Nicotiana_benthamiana_0.4.4_(Early_draft) 9 9
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2 2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   3 3
Phoenix_dactylifera__(Early_draft)   (Date palm)   3 3
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 1 1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1 1
NCBI_plasmid_sequences_(Plasmids) 116 103
Uniprot_2018_03_genome 36655 33002
NCBI_2017_08_genome 71684 66402
TargetDB__(Targets) 60 57
UniProt__viral_sequences_(Viral) 11 8
NCBI_viral_sequences_(Viral) 16 12
PDB_chains_(SCOP_1.75)_(PDB) 49 31
Protozoadb_2010_08_(Protozoadb) 130 130
Protein_Data_Bank_(all_PDB_sequenc) 561 441
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1220 1220
STRING_v9.0.5_(STRING) 1919 1771

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