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Domain combinations for STI-like superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a STI-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Meloidogyne_hapla_ 1 1
Dictyostelium_purpureum_ 1 1
Pinus_taeda   (Loblolly pine)   4 4
Picea_abies   (Norway spruce)   1 1
Eucalyptus_grandis_v201   (Rose gum)   4 4
Theobroma_cacao_B97-61/B2_v1   (Cacao)   8 8
Gossypium_raimondii_v221 8 8
Citrus_clementina_v165 27 27
Citrus_sinensis_v154   (Sweet orange)   17 17
Thellungiella_halophila_v173 8 8
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   36 35
Capsella_rubella_v183 8 8
Arabidopsis_lyrata_   (Lyrate rockcress)   9 9
Arabidopsis_thaliana_10   (Thale cress)   7 7
Carica_papaya_   (Papaya)   6 6
Medicago_truncatula_   (Barrel medic)   50 50
Phaseolus_vulgaris_v186   (French bean)   17 17
Glycine_max_v109   (Soybean)   48 48
Cucumis_sativus_v122   (Cucumber)   5 5
Fragaria_vesca_   (Wild strawberry)   5 5
Malus_domestica_v196   (Apple)   4 4
Prunus_persica_v139   (Peach)   3 3
Linum_usitatissimum_v200   (Flax)   21 21
Manihot_esculenta_v147   (Cassava)   5 5
Populus_trichocarpa_v156   (Black cottonwood)   31 31
Vitis_vinifera_   (Wine grape)   6 6
Mimulus_guttatus_v140   (Spotted monkey flower)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   16 16
Solanum_tuberosum_   (Potato)   36 36
Actinidia_chinensis_Hongyang_ 2 2
Aquilegia_coerulea_v195 4 4
Triticum_urartu_22 3 3
Triticum_aestivum_22   (Bread wheat)   5 5
Aegilops_tauschii_22 12 10
Brachypodium_distachyon_   (Stiff brome)   2 2
Oryza_barthii_22   (African wild rice)   1 1
Oryza_meridionalis_22 1 1
Oryza_glumaepatula_22 1 1
Oryza_glaberrima   (African rice)   1 1
Oryza_punctata_22 2 2
Oryza_nivara_22 2 2
Oryza_brachyantha_22   (Malo sina)   2 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2 2
Oryza_sativa_v193   (Rice)   2 2
Panicum_virgatum_v202   (Switchgrass)   2 2
Setaria_italica_v164   (Foxtail millet)   2 2
Zea_mays_subsp._mays_   (Maize)   1 1
Zea_mays_v181   (Maize)   1 1
Sorghum_bicolor_   (Sorghum)   1 1
Musa_balbisiana   (Balbis banana)   2 2
Musa_acuminata_22   (Wild Malaysian banana)   2 2
Amborella_trichopoda_22 2 2
Clostridium_tetani_E88 1 1
Clostridium_botulinum_A_str._ATCC_3502 1 1
Capnocytophaga_canimorsus_Cc5 1 1

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Strains
Genome     Number   Proteins
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   8 8
Hordeum_vulgare_22   (Domesticated barley)   2 2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1 1
Clostridium_tetani_genome_12124569 1 1
Clostridium_botulinum_H04402_065 1 1
Clostridium_botulinum_BKT015925 1 1
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_E3_str._Alaska_E43 1 1
Clostridium_botulinum_B1_str._Okra 1 1
Clostridium_botulinum_Ba4_str._657 2 2
Clostridium_botulinum_A2_str._Kyoto 1 1
Clostridium_botulinum_A3_str._Loch_Maree 1 1
Clostridium_botulinum_A_str._Hall 1 1
Clostridium_botulinum_A_str._ATCC_19397 1 1
Bacillus_toyonensis_BCT-7112 1 1
Bacillus_thuringiensis_MC28 1 1
Bacillus_thuringiensis_YBT-1518 6 6

Longest transcript per gene
Genome     Number   Proteins
Arabidopsis_thaliana_10   (Thale cress)   7 7

Others
Genome     Number   Proteins
Lotus_japonicus__(Early_assembly) 23 23
Malus_x_domestica_(Duplicate)   (Apple)   4 4
Ricinus_communis__(Early_assembly)   (Castor bean)   3 3
Nicotiana_benthamiana_0.4.4_(Early_draft) 13 13
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   16 16
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   16 16
NCBI_plasmid_sequences_(Plasmids) 15 15
PDB_chains_(SCOP_1.75)_(PDB) 22 22
UniProt__viral_sequences_(Viral) 4 4
STRING_v9.0.5_(STRING) 67 67
Protein_Data_Bank_(all_PDB_sequenc) 226 226
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 510 510
NCBI_viral_sequences_(Viral) 1 1
NCBI_2017_08_genome 1534 1527
Uniprot_2018_03_genome 2405 2387

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