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Domain combinations for Actin-crosslinking proteins superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Actin-crosslinking proteins domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   27 16
Pan_troglodytes_76_2.1.4   (Chimpanzee)   18 6
Gorilla_gorilla_76_3.1   (Western gorilla)   19 12
Pongo_abelii_76_2   (Sumatran orangutan)   13 7
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   7 4
Papio_anubis_76   (Olive baboon)   13 4
Macaca_mulatta_76_1   (Rhesus monkey)   14 5
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   23 8
Otolemur_garnettii_76_3   (Small-eared galago)   13 4
Microcebus_murinus_76_1   (Gray mouse lemur)   8 2
Rattus_norvegicus_76_5.0   (Norway rat)   10 4
Mus_musculus_76_38   (House mouse)   19 8
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   8 3
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   14 5
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   14 6
Cavia_porcellus_76_3   (Domestic guinea pig)   13 4
Oryctolagus_cuniculus_76_2   (Rabbit)   8 4
Ochotona_princeps_76   (American pika)   9 3
Tupaia_belangeri_76   (Northern tree shrew)   6 4
Sus_scrofa_76_10.2   (Pig)   17 5
Bos_taurus_76_3.1   (Cattle)   17 6
Ovis_aries_76_3.1   (Sheep)   16 5
Vicugna_pacos_76_1   (Alpaca)   5 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   13 4
Mustela_putorius_furo_76_1.0   (Domestic ferret)   13 4
Ailuropoda_melanoleuca_76_1   (Giant panda)   13 4
Canis_familiaris_76_3.1   (Dog)   16 6
Felis_catus_76_6.2   (Domestic cat)   13 5
Equus_caballus_76_2   (Horse)   16 5
Myotis_lucifugus_76_2.0   (Little brown bat)   5 2
Pteropus_vampyrus_76_1   (Large flying fox)   11 4
Sorex_araneus_76_1   (European shrew)   4 2
Erinaceus_europaeus_76   (Western European hedgehog)   8 3
Procavia_capensis_76_1   (Cape rock hyrax)   12 4
Loxodonta_africana_76_3   (African savanna elephant)   16 6
Echinops_telfairi_76   (Small Madagascar hedgehog)   4 2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   5 2
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1 1
Macropus_eugenii_76_1.0   (Tammar wallaby)   9 3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   13 4
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   13 4
Ornithorhynchus_anatinus_76_5   (Platypus)   6 3
Saccoglossus_kowalevskii_v3.0 5 2
Meleagris_gallopavo_76_2   (Turkey)   4 3
Gallus_gallus_76_4   (Chicken)   9 3
Anas_platyrhynchos_76_1.0   (Mallard)   2 2
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   9 4
Ficedula_albicollis_76_1.0   (Collared flycatcher)   9 3
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   16 5
Anolis_carolinensis_76_2.0   (Green anole)   10 4
Xenopus_laevis_   (African clawed frog)   30 9
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   9 3
Latimeria_chalumnae_76_1   (Coelacanth)   19 6
Lepisosteus_oculatus_76   (Spotted gar)   8 3
Gadus_morhua_76_1   (Atlantic cod)   16 5
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   21 6
Takifugu_rubripes_76_4   (Torafugu)   18 6
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   22 7
Oryzias_latipes_76_1   (Japanese medaka)   19 6
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   16 5
Poecilia_formosa_76   (Amazon molly)   16 5
Oreochromis_niloticus_76_1.0   (Nile tilapia)   20 6
Astyanax_mexicanus_76   (Mexican tetra)   12 4
Danio_rerio_76_9   (Zebrafish)   15 5
Oikopleura_dioica 1 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   4 2
Ciona_intestinalis_76   (Vase tunicate)   4 2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   12 5
Adineta_vaga 27 13
Octopus_bimaculoides_280 5 3
Crassostrea_gigas_22   (Pacific oyster)   13 4
Lottia_gigantea_   (Owl limpet)   5 2
Helobdella_robusta_ 10 3
Capitella_sp._I_ 5 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   5 2
Heliconius_melpomene_   (Postman butterfly)   4 2
Bombyx_mori_   (Domestic silkworm)   5 5
Nasonia_vitripennis_   (Jewel wasp)   5 2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   7 4
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   5 2
Linepithema_humile_v1.1   (Argentine ant)   5 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   6 3
Solenopsis_invicta_v.2.2.3   (Red fire ant)   4 2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   5 2
Atta_cephalotes_v1.1 5 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   5 2
Lucilia_cuprina   (Australian sheep blowfly)   5 2
Drosophila_grimshawi_1.3 5 2
Drosophila_willistoni_1.3 5 2
Drosophila_pseudoobscura_2.13 5 2
Drosophila_persimilis_1.3 5 2
Drosophila_suzukii 8 3
Drosophila_yakuba_1.3 6 3
Drosophila_simulans_1.3 1 1
Drosophila_sechellia_1.3 5 2
Drosophila_melanogaster_76_5   (Fruit fly)   25 7
Drosophila_erecta_1.3 5 2
Drosophila_ananassae_1.3 5 2
Drosophila_virilis_1.2 5 2
Drosophila_mojavensis_1.3 5 2
Megaselia_scalaris_22 3 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   6 3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   5 3
Anopheles_darlingi_22   (American malaria mosquito)   2 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   1 1
Tribolium_castaneum_3.0   (Red flour beetle)   5 2
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5 2
Acyrthosiphon_pisum_   (Pea aphid)   5 2
Rhodnius_prolixus_22 2 2
Daphnia_pulex_   (Common water flea)   5 2
Strigamia_maritima_22 5 2
Sarcoptes_scabiei 4 2
Tetranychus_urticae_   (Two-spotted spider mite)   3 2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   5 2
Pristionchus_pacificus_ 65 57
Meloidogyne_incognita_   (Southern root-knot nematode)   5 5
Meloidogyne_hapla_ 2 2
Onchocerca_volvulus_22 1 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2 2
Caenorhabditis_japonica_ 5 5
Caenorhabditis_brenneri_ 2 2
Caenorhabditis_remanei_ 1 1
Caenorhabditis_elegans_76_235   (Roundworm)   5 5
Caenorhabditis_briggsae_2 3 3
Trichinella_spiralis_22 1 1
Hymenolepis_microstoma_ 3 2
Echinococcus_multilocularis_ 4 2
Echinococcus_granulosus_ 4 2
Taenia_solium_   (Pork tapeworm)   3 3
Schistosoma_mansoni_ 4 2
Mnemiopsis_leidyi   (Sea walnut)   6 4
Thelohanellus_kitauei 1 1
Acropora_digitifera_v1.0 2 1
Nematostella_vectensis_1.0   (Starlet sea anemone)   5 2
Hydra_vulgaris 21 10
Amphimedon_queenslandica 5 2
Trichoplax_adhaerens_ 2 2
Proterospongia_sp._ATCC_50818_ 11 5
Monosiga_brevicollis_ 9 3
Capsaspora_owczarzaki_ATCC_30864_ 4 2
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Mortierella_verticillata_NRRL_6337_ 2 2
Rhizopus_oryzae_RA_99-880_ 1 1
Mucor_circinelloides_ 1 1
Rhizomucor_miehei_CAU432_ 1 1
Malassezia_globosa_CBS_7966_ 2 2
Sporisorium_reilianum_22 1 1
Ustilago_maydis_ 1 1
Mixia_osmundae_IAM_14324_v1.0 1 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1 1
Melampsora_laricis-populina_ 1 1
Rhodotorula_graminis_WP1_v1.0 1 1
Sporobolomyces_roseus_IAM_13481_ 1 1
Microbotryum_violaceum_22 1 1
Wallemia_sebi_v1.0 1 1
Sphaerobolus_stellatus_v1.0 1 1
Piloderma_croceum_F_1598_v1.0 1 1
Serpula_lacrymans_var._lacrymans_S7.9_ 8 6
Coniophora_puteana 1 1
Hydnomerulius_pinastri_v2.0 1 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1 1
Pisolithus_microcarpus_441_v1.0 2 2
Pisolithus_tinctorius_Marx_270_v1.0 4 4
Scleroderma_citrinum_Foug_A_v1.0 1 1
Coprinopsis_cinerea_okayama7_130_v3 1 1
Pleurotus_ostreatus_   (Oyster mushroom)   1 1
Amanita_thiersii_Skay4041_v1.0 1 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   9 7
Galerina_marginata_v1.0 1 1
Hebeloma_cylindrosporum_h7_v2.0 1 1
Laccaria_bicolor_S238N-H82_ 1 1
Agaricus_bisporus_var._bisporus_ 1 1
Schizophyllum_commune_ 2 2
Stereum_hirsutum_FP-91666_SS1__v1.0 5 3
Heterobasidion_annosum_ 5 4
Gloeophyllum_trabeumv1.0 1 1
Punctularia_strigosozonata_v1.0 1 1
Sebacina_vermifera_MAFF_305830_v1.0 1 1
Fomitiporia_mediterranea_v1.0 1 1
Tulasnella_calospora_AL13/4D_v1.0 1 1
Postia_placenta_ 1 1
Wolfiporia_cocos_MD-104_SS10__v1.0 1 1
Fomitopsis_pinicolav1.0 1 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1 1
Phanerochaete_chrysosporium_RP-78_2.1 1 1
Dichomitus_squalens 1 1
Trametes_versicolor_v1.0 1 1
Tremella_mesenterica_   (Witches' butter)   1 1
Daldinia_eschscholzii_EC12_v1.0 1 1
Apiospora_montagnei_NRRL_25634_v1.0 1 1
Magnaporthe_poae_ATCC_64411_22 2 2
Magnaporthe_grisea_70-15_ 1 1
Podospora_anserina_ 1 1
Sporotrichum_thermophile_ATCC_42464_ 1 1
Thielavia_terrestris_NRRL_8126_ 1 1
Chaetomium_globosum_CBS_148.51_ 1 1
Neurospora_tetrasperma_ 1 1
Neurospora_discreta_FGSC_8579_ 1 1
Neurospora_crassa_OR74A_ 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   2 2
Verticillium_albo-atrum_VaMs.102_ 1 1
Verticillium_dahliae_VdLs.17_ 1 1
Acremonium_alcalophilumv_1.0 1 1
Glomerella_graminicola_22 1 1
Fusarium_graminearum_ 1 1
Nectria_haematococca_mpVI_ 1 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 2 2
Fusarium_verticillioides_7600_ 2 2
Trichoderma_asperellum_CBS_433.97_v1.0 3 3
Trichoderma_atroviride_ 2 2
Trichoderma_citrinoviride_v1.0 2 2
Trichoderma_reesei_1.2 3 3
Trichoderma_virens_Gv29-8_ 1 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1 1
Trichoderma_harzianum_CBS_226.95_v1.0 1 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1 1
Botrytis_cinerea_B05.10_ 1 1
Sclerotinia_sclerotiorum_ 1 1
Blumeria_graminis_22 1 1
Didymella_exigua_CBS_183.55_v1.0 1 1
Leptosphaeria_maculans_22 2 1
Setosphaeria_turcica_v1.0 1 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 2 2
Cochliobolus_victoriae_FI3_v1.0 3 3
Cochliobolus_carbonum_26-R-13_v1.0 3 3
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   2 2
Alternaria_brassicicola_ 1 1
Cochliobolus_lunatus_m118_v2.0 1 1
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 1 1
Mycosphaerella_graminicola_IPO323_ 1 1
Zasmidium_cellare_ATCC_36951_v1.0 1 1
Dothistroma_septosporum 1 1
Septoria_musiva_v1.0 1 1
Mycosphaerella_fijiensis_CIRAD86_ 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Paracoccidioides_brasiliensis_Pb18_ 1 1
Coccidioides_posadasii_RMSCC_3488_ 1 1
Coccidioides_immitis_RS_ 1 1
Ajellomyces_dermatitidis_SLH14081_ 1 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_equinum_CBS_127.97_ 1 1
Trichophyton_tonsurans_CBS_112818_ 1 1
Trichophyton_rubrum_CBS_118892_ 1 1
Uncinocarpus_reesii_1704_ 1 1
Aspergillus_zonatus_v1.0 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1 1
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_acidus_v1.0 1 1
Aspergillus_fumigatus_Af293 1 1
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_nidulans_FGSC_A4_ 1 1
Aspergillus_sydowii_v1.0 1 1
Aspergillus_versicolor_v1.0 1 1
Aspergillus_glaucus 2 2
Aspergillus_carbonarius_ITEM_5010_ 1 1
Neosartorya_fischeri_NRRL_181_ 1 1
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 1 1
Aspergillus_oryzae_RIB40_ 1 1
Aspergillus_niger_22 1 1
Aspergillus_niger_ATCC_1015_ 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Aspergillus_clavatus_NRRL_1_ 1 1
Penicillium_marneffei_ATCC_18224_ 3 3
Tuber_melanosporum_Mel28_22 1 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1 1
Wickerhamomyces_anomalus 1 1
Schizosaccharomyces_cryophilus_OY26_22 1 1
Schizosaccharomyces_octosporus_yFS286_ 1 1
Schizosaccharomyces_japonicus_yFS275_ 1 1
Schizosaccharomyces_pombe   (Fission yeast)   1 1
Catenaria_anguillulae_PL171_v1.0 1 1
Allomyces_macrogynus_ATCC_38327_ 7 6
Spizellomyces_punctatus_DAOM_BR117_ 1 1
Dictyostelium_discoideum 7 7
Dictyostelium_purpureum_ 3 3
Entamoeba_invadens_1.2 9 5
Selaginella_moellendorffii_ 23 20
Pinus_taeda   (Loblolly pine)   11 11
Picea_abies   (Norway spruce)   7 7
Eucalyptus_grandis_v201   (Rose gum)   15 10
Theobroma_cacao_B97-61/B2_v1   (Cacao)   7 7
Gossypium_raimondii_v221 20 19
Citrus_clementina_v165 8 6
Citrus_sinensis_v154   (Sweet orange)   11 11
Thellungiella_halophila_v173 8 5
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   20 17
Capsella_rubella_v183 10 7
Arabidopsis_lyrata_   (Lyrate rockcress)   8 6
Arabidopsis_thaliana_10   (Thale cress)   9 7
Carica_papaya_   (Papaya)   4 4
Medicago_truncatula_   (Barrel medic)   19 16
Phaseolus_vulgaris_v186   (French bean)   11 9
Glycine_max_v109   (Soybean)   17 14
Cucumis_sativus_v122   (Cucumber)   9 6
Fragaria_vesca_   (Wild strawberry)   8 6
Malus_domestica_v196   (Apple)   11 11
Prunus_persica_v139   (Peach)   7 5
Linum_usitatissimum_v200   (Flax)   10 9
Manihot_esculenta_v147   (Cassava)   8 7
Populus_trichocarpa_v156   (Black cottonwood)   13 10
Vitis_vinifera_   (Wine grape)   10 7
Mimulus_guttatus_v140   (Spotted monkey flower)   11 9
Solanum_lycopersicum_v.2.3   (Tomato)   14 10
Solanum_tuberosum_   (Potato)   22 16
Actinidia_chinensis_Hongyang_ 9 8
Aquilegia_coerulea_v195 5 4
Triticum_urartu_22 15 14
Triticum_aestivum_22   (Bread wheat)   43 29
Aegilops_tauschii_22 23 22
Brachypodium_distachyon_   (Stiff brome)   17 17
Oryza_barthii_22   (African wild rice)   20 17
Oryza_meridionalis_22 35 31
Oryza_glumaepatula_22 31 23
Oryza_glaberrima   (African rice)   19 17
Oryza_punctata_22 31 23
Oryza_nivara_22 22 19
Oryza_brachyantha_22   (Malo sina)   11 8
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   21 19
Oryza_sativa_v193   (Rice)   21 19
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   9 9
Panicum_virgatum_v202   (Switchgrass)   30 30
Setaria_italica_v164   (Foxtail millet)   17 17
Zea_mays_subsp._mays_   (Maize)   22 22
Zea_mays_v181   (Maize)   24 24
Sorghum_bicolor_   (Sorghum)   19 18
Musa_balbisiana   (Balbis banana)   13 11
Musa_acuminata_22   (Wild Malaysian banana)   8 8
Amborella_trichopoda_22 6 6
Physcomitrella_patens 5 5
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Bigelowiella_natans_CCMP2755_22 6 4
Trypanosoma_cruzi_strain_CL_Brener 1 1
Ectocarpus_siliculosus 1 1
Aureococcus_anophagefferens_ 1 1
Albugo_laibachii_22 1 1
Pythium_iwayamai_DAOM_BR242034_22 1 1
Pythium_arrhenomanes_ATCC_12531_22 2 2
Pythium_ultimum_v1.7-2 2 2
Pythium_aphanidermatum_DAOM_BR444_22 2 2
Pythium_irregulare_DAOM_BR486_22 2 2
Pythium_vexans_DAOM_BR484_22 3 3
Phytophthora_ramorum_1.1   (Sudden oak death agent)   7 6
Phytophthora_sojae_1.1 6 6
Phytophthora_infestans_T30-4_ 8 8
Phytophthora_capsici_ 2 2
Hyaloperonospora_arabidopsidis_22 2 2
Fragilariopsis_cylindrus 4 2
Thalassiosira_pseudonana_CCMP1335 1 1
Tetrahymena_thermophila_SB210_1_ 2 2
Symbiodinium_minutum_clade_B1_v1.2 9 9
Naegleria_gruberi_ 13 9
Trichomonas_vaginalis_ 2 2
Guillardia_theta_CCMP2712_v1.0_ 1 1
Cyanothece_sp._PCC_8802 1 1
Calothrix_sp._PCC_7507 1 1
Thermobispora_bispora_DSM_43833 2 2
Nakamurella_multipartita_DSM_44233 4 4
Kineococcus_radiotolerans_SRS30216 1 1
Catenulispora_acidiphila_DSM_44928 13 9
Thermobifida_fusca_YX 1 1
Streptosporangium_roseum_DSM_43021 2 2
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_sp._PAMC26508 1 1
Streptomyces_flavogriseus_ATCC_33331 1 1
Streptomyces_sp._SirexAA-E 1 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_bingchenggensis_BCW-1 3 3
Streptomyces_violaceusniger_Tu_4113 1 1
Streptomyces_avermitilis_MA-4680 1 1
Streptomyces_scabiei_87.22 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1 1
Actinosynnema_mirum_DSM_43827 1 1
Amycolatopsis_mediterranei_U32 1 1
Kribbella_flavida_DSM_17836 1 1
Verrucosispora_maris_AB-18-032 3 2
Micromonospora_sp._L5 5 3
Micromonospora_aurantiaca_ATCC_27029 3 2
Actinoplanes_sp._N902-109 1 1
Actinoplanes_sp._SE50/110 1 1
Actinoplanes_missouriensis_431 1 1
Rhodococcus_erythropolis_PR4 1 1
Sanguibacter_keddieii_DSM_10542 1 1
Beutenbergia_cavernae_DSM_12333 1 1
Jonesia_denitrificans_DSM_20603 1 1
Brachybacterium_faecium_DSM_4810 1 1
Isoptericola_variabilis_225 1 1
Xylanimonas_cellulosilytica_DSM_15894 1 1
Cellulomonas_fimi_ATCC_484 1 1
[Cellvibrio]_gilvus_ATCC_13127 1 1
Herpetosiphon_aurantiacus_DSM_785 2 2
Eubacterium_siraeum 1 1
Clostridium_cellulolyticum_H10 1 1
Clostridium_phytofermentans_ISDg 1 1
Clostridium_sp._BNL1100 1 1
Caldicellulosiruptor_kronotskyensis_2002 4 2
Thermoanaerobacter_tengcongensis_MB4 1 1
Paenibacillus_sp._JDR-2 3 3
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_weihenstephanensis_KBAB4 1 1
Bacillus_thuringiensis_str._Al_Hakam 1 1
Bacillus_cereus_03BB102 1 1
Bacillus_anthracis_str._A0248 1 1
Niastella_koreensis_GR20-10 4 4
Chitinophaga_pinensis_DSM_2588 7 6
Fibrella_aestuarina 1 1
Pedobacter_saltans_DSM_12145 1 1
Zobellia_galactanivorans 2 2
Phycisphaera_mikurensis_NBRC_102666 1 1
Coraliomargarita_akajimensis_DSM_45221 6 6
Spirochaeta_thermophila_DSM_6192 1 1
Dictyoglomus_thermophilum_H-6-12 1 1
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Terriglobus_saanensis_SP1PR4 1 1
Bdellovibrio_bacteriovorus_HD100 1 1
Haliangium_ochraceum_DSM_14365 3 3
Stigmatella_aurantiaca_DW4/3-1 4 4
Corallococcus_coralloides_DSM_2259 3 2
Myxococcus_xanthus_DK_1622 1 1
Myxococcus_fulvus_HW-1 2 1
Burkholderia_gladioli_BSR3 1 1
Phaeobacter_gallaeciensis_2.10 1 1
Agrobacterium_vitis_S4 1 1
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Photorhabdus_asymbiotica 5 4
Photorhabdus_luminescens_subsp._laumondii_TTO1 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1 1
Methanohalobium_evestigatum_Z-7303 2 1
Halopiger_xanaduensis_SH-6 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   28 10
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   25 7
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   5 2
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1 1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   4 4
Cryptococcus_neoformans_var._grubii_H99_ 1 1
Cryptococcus_neoformans_B-3501A_ 1 1
Paracoccidioides_brasiliensis_Pb01_ 1 1
Paracoccidioides_brasiliensis_Pb03_ 1 1
Coccidioides_posadasii_str._Silveira_ 1 1
Coccidioides_immitis_RMSCC_3703_ 1 1
Coccidioides_immitis_RMSCC_2394_ 1 1
Coccidioides_immitis_H538.4_ 1 1
Ajellomyces_dermatitidis_ER-3_ 1 1
Histoplasma_capsulatum_H143 1 1
Histoplasma_capsulatum_H88 1 1
Histoplasma_capsulatum_G186AR 1 1
Aspergillus_fumigatus_A1163_ 1 1
Schizosaccharomyces_pombe_972h-_ 1 1
Batrachochytrium_dendrobatidis_JEL423_ 1 1
Batrachochytrium_dendrobatidis_JAM81_ 1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   7 6
Hordeum_vulgare_22   (Domesticated barley)   8 8
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   26 24
Cyanothece_sp._PCC_7822 1 1
Cyanothece_sp._PCC_8801 1 1
Cylindrospermum_stagnale_PCC_7417 1 1
Streptomyces_rapamycinicus_NRRL_5491 1 1
Streptomyces_davawensis_JCM_4913 3 2
Streptomyces_venezuelae_ATCC_10712 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1 1
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Actinoplanes_friuliensis_DSM_7358 2 2
Rhodococcus_erythropolis_CCM2595 1 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 1 1
Clostridium_pasteurianum_BC1 1 1
Thermobacillus_composti_KWC4 1 1
Bacillus_licheniformis_9945A 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_thuringiensis_HD-771 1 1
Bacillus_thuringiensis_HD-789 1 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 1 1
Bacillus_thuringiensis_YBT-1518 1 1
Bacillus_thuringiensis_Bt407 1 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1 1
Bacillus_thuringiensis_BMB171 1 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1 1
Bacillus_cereus_AH820 1 1
Bacillus_cereus_G9842 1 1
Bacillus_cereus_F837/76 1 1
Bacillus_anthracis_str._H9401 1 1
Bacillus_anthracis_str._CDC_684 1 1
Bacillus_anthracis_str._'Ames_Ancestor' 1 1
Bacillus_anthracis_str._Sterne 1 1
Bacillus_anthracis_str._Ames 1 1
Spirochaeta_thermophila_DSM_6578 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Myxococcus_stipitatus_DSM_14675 1 1
Burkholderia_lata 1 1
Phaeobacter_gallaeciensis_DSM_17395 1 1
Xanthomonas_citri_subsp._citri_Aw12879 1 1
Xanthomonas_axonopodis_Xac29-1 1 1
Dickeya_dadantii_3937 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1 1
Methanolobus_psychrophilus_R15 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   18 8
Pan_troglodytes_69_2.1.4   (Chimpanzee)   18 6
Gorilla_gorilla_69_3.1   (Western gorilla)   12 5
Pongo_abelii_69_2   (Sumatran orangutan)   13 7
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   6 3
Macaca_mulatta_69_1   (Rhesus monkey)   13 4
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   17 5
Otolemur_garnettii_69_3   (Small-eared galago)   13 4
Microcebus_murinus_69_1   (Gray mouse lemur)   8 2
Rattus_norvegicus_69_3.4   (Norway rat)   14 5
Mus_musculus_69_38   (House mouse)   13 4
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   8 3
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   14 5
Cavia_porcellus_69_3   (Domestic guinea pig)   13 4
Oryctolagus_cuniculus_69_2   (Rabbit)   12 5
Ochotona_princeps_69   (American pika)   9 3
Tupaia_belangeri_69   (Northern tree shrew)   6 4
Sus_scrofa_69_10.2   (Pig)   17 5
Bos_taurus_69_3.1   (Cattle)   14 5
Vicugna_pacos_69_1   (Alpaca)   5 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   13 4
Mustela_putorius_furo_69_1.0   (Domestic ferret)   13 4
Ailuropoda_melanoleuca_69_1   (Giant panda)   13 4
Canis_familiaris_69_3.1   (Dog)   13 4
Felis_catus_69   (Domestic cat)   12 4
Equus_caballus_69_2   (Horse)   12 4
Myotis_lucifugus_69_2.0   (Little brown bat)   5 2
Pteropus_vampyrus_69_1   (Large flying fox)   11 4
Sorex_araneus_69_1   (European shrew)   4 2
Erinaceus_europaeus_69   (Western European hedgehog)   8 3
Procavia_capensis_69_1   (Cape rock hyrax)   12 4
Loxodonta_africana_69_3   (African savanna elephant)   11 4
Echinops_telfairi_69   (Small Madagascar hedgehog)   4 2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   5 2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1 1
Macropus_eugenii_69_1.0   (Tammar wallaby)   9 3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   13 4
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   13 4
Ornithorhynchus_anatinus_69_5   (Platypus)   6 3
Meleagris_gallopavo_69_2   (Turkey)   4 3
Gallus_gallus_69_2   (Chicken)   4 3
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   9 4
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   12 4
Anolis_carolinensis_69_2.0   (Green anole)   10 4
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   9 3
Latimeria_chalumnae_69_1   (Coelacanth)   16 5
Gadus_morhua_69_1   (Atlantic cod)   16 5
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   21 6
Takifugu_rubripes_69_4   (Torafugu)   17 5
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   17 5
Oryzias_latipes_69_1   (Japanese medaka)   17 5
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   16 5
Oreochromis_niloticus_69_1.0   (Nile tilapia)   16 5
Danio_rerio_69_9   (Zebrafish)   15 5
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   4 2
Ciona_intestinalis_69   (Vase tunicate)   4 2
Drosophila_melanogaster_69_5   (Fruit fly)   5 2
Caenorhabditis_elegans_69_215   (Roundworm)   4 4
Arabidopsis_thaliana_10   (Thale cress)   8 6

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   45 24
Homo_sapiens__(NCBI_version)   (Human)   25 14
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   13 4
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   1 1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   1 1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
Moniliophthora_perniciosa_FA553__(Genome_survey) 2 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2 2
Lotus_japonicus__(Early_assembly) 11 11
Malus_x_domestica_(Duplicate)   (Apple)   11 11
Ricinus_communis__(Early_assembly)   (Castor bean)   7 6
Nicotiana_benthamiana_0.4.4_(Early_draft) 22 17
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   14 10
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   14 10
NCBI_plasmid_sequences_(Plasmids) 4 4
NCBI_viral_sequences_(Viral) 28 28
TargetDB__(Targets) 34 25
PDB_chains_(SCOP_1.75)_(PDB) 5 2
Protozoadb_2010_08_(Protozoadb) 6 6
Protein_Data_Bank_(all_PDB_sequenc) 84 24
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 241 241
UniProt__viral_sequences_(Viral) 1 1
STRING_v9.0.5_(STRING) 698 408
Uniprot_2018_03_genome 7953 5685
NCBI_2017_08_genome 9324 6117

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