SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for PH domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a PH domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   1904 1678
Pan_troglodytes_76_2.1.4   (Chimpanzee)   462 396
Gorilla_gorilla_76_3.1   (Western gorilla)   694 590
Pongo_abelii_76_2   (Sumatran orangutan)   494 422
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   489 422
Papio_anubis_76   (Olive baboon)   553 471
Macaca_mulatta_76_1   (Rhesus monkey)   854 749
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1161 1010
Otolemur_garnettii_76_3   (Small-eared galago)   480 412
Microcebus_murinus_76_1   (Gray mouse lemur)   374 321
Rattus_norvegicus_76_5.0   (Norway rat)   624 530
Mus_musculus_76_38   (House mouse)   1283 1147
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   411 351
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   458 393
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   464 393
Cavia_porcellus_76_3   (Domestic guinea pig)   467 397
Oryctolagus_cuniculus_76_2   (Rabbit)   479 409
Ochotona_princeps_76   (American pika)   391 328
Tupaia_belangeri_76   (Northern tree shrew)   334 296
Sus_scrofa_76_10.2   (Pig)   544 475
Bos_taurus_76_3.1   (Cattle)   517 447
Ovis_aries_76_3.1   (Sheep)   542 463
Vicugna_pacos_76_1   (Alpaca)   257 220
Tursiops_truncatus_76_1   (Bottlenose dolphin)   437 374
Mustela_putorius_furo_76_1.0   (Domestic ferret)   471 400
Ailuropoda_melanoleuca_76_1   (Giant panda)   539 465
Canis_familiaris_76_3.1   (Dog)   655 561
Felis_catus_76_6.2   (Domestic cat)   490 414
Equus_caballus_76_2   (Horse)   618 534
Myotis_lucifugus_76_2.0   (Little brown bat)   438 374
Pteropus_vampyrus_76_1   (Large flying fox)   447 384
Sorex_araneus_76_1   (European shrew)   271 239
Erinaceus_europaeus_76   (Western European hedgehog)   330 286
Procavia_capensis_76_1   (Cape rock hyrax)   391 333
Loxodonta_africana_76_3   (African savanna elephant)   694 595
Echinops_telfairi_76   (Small Madagascar hedgehog)   361 313
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   637 554
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   240 208
Macropus_eugenii_76_1.0   (Tammar wallaby)   409 342
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   551 470
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   478 409
Ornithorhynchus_anatinus_76_5   (Platypus)   438 385
Saccoglossus_kowalevskii_v3.0 456 384
Petromyzon_marinus_76_7.0   (Sea lamprey)   248 214
Meleagris_gallopavo_76_2   (Turkey)   451 390
Gallus_gallus_76_4   (Chicken)   470 397
Anas_platyrhynchos_76_1.0   (Mallard)   439 373
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   446 377
Ficedula_albicollis_76_1.0   (Collared flycatcher)   453 378
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   529 450
Anolis_carolinensis_76_2.0   (Green anole)   451 383
Xenopus_laevis_   (African clawed frog)   537 475
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   550 475
Latimeria_chalumnae_76_1   (Coelacanth)   572 497
Lepisosteus_oculatus_76   (Spotted gar)   702 580
Gadus_morhua_76_1   (Atlantic cod)   621 540
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   854 734
Takifugu_rubripes_76_4   (Torafugu)   2160 1857
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   701 609
Oryzias_latipes_76_1   (Japanese medaka)   689 593
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   641 540
Poecilia_formosa_76   (Amazon molly)   672 568
Oreochromis_niloticus_76_1.0   (Nile tilapia)   888 742
Astyanax_mexicanus_76   (Mexican tetra)   661 563
Danio_rerio_76_9   (Zebrafish)   1078 931
Oikopleura_dioica 110 102
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   384 342
Ciona_intestinalis_76   (Vase tunicate)   184 158
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   291 249
Adineta_vaga 388 358
Octopus_bimaculoides_280 337 315
Crassostrea_gigas_22   (Pacific oyster)   227 201
Lottia_gigantea_   (Owl limpet)   205 181
Helobdella_robusta_ 252 236
Capitella_sp._I_ 232 200
Danaus_plexippus_OGS1.0   (Monarch butterfly)   186 167
Heliconius_melpomene_   (Postman butterfly)   142 131
Bombyx_mori_   (Domestic silkworm)   136 129
Nasonia_vitripennis_   (Jewel wasp)   133 116
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   334 291
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   176 156
Linepithema_humile_v1.1   (Argentine ant)   175 156
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   180 160
Solenopsis_invicta_v.2.2.3   (Red fire ant)   145 130
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   169 151
Atta_cephalotes_v1.1 173 152
Camponotus_floridanus_v3.3   (Florida carpenter ant)   176 157
Lucilia_cuprina   (Australian sheep blowfly)   151 134
Drosophila_grimshawi_1.3 172 153
Drosophila_willistoni_1.3 167 149
Drosophila_pseudoobscura_2.13 163 146
Drosophila_persimilis_1.3 168 152
Drosophila_suzukii 174 153
Drosophila_yakuba_1.3 166 151
Drosophila_simulans_1.3 146 130
Drosophila_sechellia_1.3 167 152
Drosophila_melanogaster_76_5   (Fruit fly)   595 530
Drosophila_erecta_1.3 163 146
Drosophila_ananassae_1.3 160 144
Drosophila_virilis_1.2 165 150
Drosophila_mojavensis_1.3 167 149
Megaselia_scalaris_22 62 58
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   182 166
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   173 160
Anopheles_darlingi_22   (American malaria mosquito)   129 113
Anopheles_gambiae_49_3j   (African malaria mosquito)   168 147
Tribolium_castaneum_3.0   (Red flour beetle)   182 162
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   164 147
Acyrthosiphon_pisum_   (Pea aphid)   141 127
Rhodnius_prolixus_22 154 139
Daphnia_pulex_   (Common water flea)   187 169
Strigamia_maritima_22 196 171
Sarcoptes_scabiei 125 113
Tetranychus_urticae_   (Two-spotted spider mite)   141 124
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   152 137
Pristionchus_pacificus_ 112 106
Meloidogyne_incognita_   (Southern root-knot nematode)   116 110
Meloidogyne_hapla_ 68 67
Onchocerca_volvulus_22 145 135
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   212 193
Caenorhabditis_japonica_ 116 109
Caenorhabditis_brenneri_ 175 165
Caenorhabditis_remanei_ 144 135
Caenorhabditis_elegans_76_235   (Roundworm)   327 304
Caenorhabditis_briggsae_2 138 129
Trichinella_spiralis_22 137 130
Hymenolepis_microstoma_ 128 113
Echinococcus_multilocularis_ 137 124
Echinococcus_granulosus_ 137 125
Taenia_solium_   (Pork tapeworm)   127 117
Schistosoma_mansoni_ 137 128
Mnemiopsis_leidyi   (Sea walnut)   128 118
Thelohanellus_kitauei 31 31
Acropora_digitifera_v1.0 213 191
Nematostella_vectensis_1.0   (Starlet sea anemone)   229 201
Hydra_vulgaris 192 166
Amphimedon_queenslandica 304 262
Trichoplax_adhaerens_ 149 129
Proterospongia_sp._ATCC_50818_ 318 266
Monosiga_brevicollis_ 189 163
Sphaeroforma_arctica_JP610_ 79 66
Capsaspora_owczarzaki_ATCC_30864_ 213 176
Conidiobolus_coronatus_NRRL28638_v1.0 53 51
Mortierella_verticillata_NRRL_6337_ 80 75
Phycomyces_blakesleeanus_ 110 108
Rhizopus_oryzae_RA_99-880_ 107 105
Mucor_circinelloides_ 101 98
Rhizomucor_miehei_CAU432_ 90 88
Malassezia_globosa_CBS_7966_ 58 56
Sporisorium_reilianum_22 42 40
Ustilago_maydis_ 42 41
Mixia_osmundae_IAM_14324_v1.0 40 39
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 41 39
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 39 38
Melampsora_laricis-populina_ 36 35
Rhodotorula_graminis_WP1_v1.0 35 34
Sporobolomyces_roseus_IAM_13481_ 28 26
Microbotryum_violaceum_22 50 48
Wallemia_sebi_v1.0 41 40
Sphaerobolus_stellatus_v1.0 53 51
Piloderma_croceum_F_1598_v1.0 52 51
Serpula_lacrymans_var._lacrymans_S7.9_ 34 32
Coniophora_puteana 45 44
Hydnomerulius_pinastri_v2.0 50 48
Paxillus_rubicundulus_Ve08.2h10_v1.0 50 48
Pisolithus_microcarpus_441_v1.0 48 47
Pisolithus_tinctorius_Marx_270_v1.0 51 49
Scleroderma_citrinum_Foug_A_v1.0 52 50
Coprinopsis_cinerea_okayama7_130_v3 55 52
Pleurotus_ostreatus_   (Oyster mushroom)   48 47
Amanita_thiersii_Skay4041_v1.0 49 48
Amanita_muscaria_Koide_v1.0   (Fly agaric)   55 53
Galerina_marginata_v1.0 61 58
Hebeloma_cylindrosporum_h7_v2.0 58 55
Laccaria_bicolor_S238N-H82_ 58 55
Agaricus_bisporus_var._bisporus_ 50 48
Schizophyllum_commune_ 50 48
Stereum_hirsutum_FP-91666_SS1__v1.0 47 46
Heterobasidion_annosum_ 44 43
Gloeophyllum_trabeumv1.0 46 45
Punctularia_strigosozonata_v1.0 43 42
Sebacina_vermifera_MAFF_305830_v1.0 67 65
Fomitiporia_mediterranea_v1.0 46 44
Tulasnella_calospora_AL13/4D_v1.0 47 45
Postia_placenta_ 66 65
Wolfiporia_cocos_MD-104_SS10__v1.0 53 50
Fomitopsis_pinicolav1.0 50 48
Fomitopsis_pinicola_FP-58527_SS1_v3.0 50 48
Phanerochaete_chrysosporium_RP-78_2.1 42 41
Dichomitus_squalens 47 45
Trametes_versicolor_v1.0 48 46
Tremella_mesenterica_   (Witches' butter)   42 41
Daldinia_eschscholzii_EC12_v1.0 40 38
Apiospora_montagnei_NRRL_25634_v1.0 41 40
Magnaporthe_poae_ATCC_64411_22 31 30
Magnaporthe_grisea_70-15_ 38 36
Podospora_anserina_ 36 34
Sporotrichum_thermophile_ATCC_42464_ 36 34
Thielavia_terrestris_NRRL_8126_ 37 35
Chaetomium_globosum_CBS_148.51_ 35 33
Neurospora_tetrasperma_ 40 38
Neurospora_discreta_FGSC_8579_ 39 37
Neurospora_crassa_OR74A_ 40 38
Cryphonectria_parasitica_   (Chestnut blight fungus)   38 36
Verticillium_albo-atrum_VaMs.102_ 36 35
Verticillium_dahliae_VdLs.17_ 34 33
Acremonium_alcalophilumv_1.0 38 36
Glomerella_graminicola_22 42 40
Fusarium_graminearum_ 38 38
Nectria_haematococca_mpVI_ 37 36
Fusarium_oxysporum_f._sp._lycopersici_4286_ 43 43
Fusarium_verticillioides_7600_ 36 35
Trichoderma_asperellum_CBS_433.97_v1.0 38 37
Trichoderma_atroviride_ 38 37
Trichoderma_citrinoviride_v1.0 41 39
Trichoderma_reesei_1.2 40 39
Trichoderma_virens_Gv29-8_ 37 36
Trichoderma_longibrachiatum_ATCC_18648_v1.0 35 35
Trichoderma_harzianum_CBS_226.95_v1.0 40 39
Amorphotheca_resinae_v1.0   (Creosote fungus)   38 37
Botrytis_cinerea_B05.10_ 38 36
Sclerotinia_sclerotiorum_ 42 40
Blumeria_graminis_22 36 34
Didymella_exigua_CBS_183.55_v1.0 42 41
Leptosphaeria_maculans_22 43 41
Setosphaeria_turcica_v1.0 46 44
Cochliobolus_miyabeanus_ATCC_44560_v1.0 45 43
Cochliobolus_victoriae_FI3_v1.0 43 41
Cochliobolus_carbonum_26-R-13_v1.0 44 42
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   41 39
Alternaria_brassicicola_ 37 37
Cochliobolus_lunatus_m118_v2.0 45 43
Pyrenophora_teres_f._teres_22 46 43
Pyrenophora_tritici-repentis_ 43 41
Stagonospora_nodorum_ 46 44
Mycosphaerella_graminicola_IPO323_ 38 37
Zasmidium_cellare_ATCC_36951_v1.0 44 41
Dothistroma_septosporum 41 39
Septoria_musiva_v1.0 42 40
Mycosphaerella_fijiensis_CIRAD86_ 35 34
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 44 43
Paracoccidioides_brasiliensis_Pb18_ 37 36
Coccidioides_posadasii_RMSCC_3488_ 39 39
Coccidioides_immitis_RS_ 39 39
Ajellomyces_dermatitidis_SLH14081_ 43 42
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 38 37
Microsporum_canis_CBS_113480_ 35 34
Trichophyton_equinum_CBS_127.97_ 37 35
Trichophyton_verrucosum_HKI_0517_ 39 38
Arthroderma_benhamiae_CBS_112371_ 38 37
Trichophyton_tonsurans_CBS_112818_ 36 34
Trichophyton_rubrum_CBS_118892_ 36 35
Uncinocarpus_reesii_1704_ 33 33
Aspergillus_zonatus_v1.0 38 37
Penicillium_chrysogenum_Wisconsin_54-1255_ 41 40
Penicillium_chrysogenum_v1.0 39 38
Aspergillus_acidus_v1.0 41 39
Aspergillus_fumigatus_Af293 39 37
Aspergillus_brasiliensis_v1.0 40 38
Aspergillus_nidulans_FGSC_A4_ 42 40
Aspergillus_sydowii_v1.0 39 37
Aspergillus_versicolor_v1.0 40 39
Aspergillus_glaucus 42 39
Aspergillus_carbonarius_ITEM_5010_ 39 37
Neosartorya_fischeri_NRRL_181_ 38 37
Aspergillus_terreus_NIH2624_ 36 35
Aspergillus_tubingensis_v1.0 40 38
Aspergillus_wentii_v1.0 37 35
Aspergillus_oryzae_RIB40_ 34 33
Aspergillus_niger_22 40 38
Aspergillus_niger_ATCC_1015_ 28 27
Aspergillus_flavus_NRRL3357_ 38 37
Aspergillus_clavatus_NRRL_1_ 39 38
Penicillium_marneffei_ATCC_18224_ 43 41
Tuber_melanosporum_Mel28_22 45 43
Tuber_melanosporum_Vittad_   (Perigord truffle)   45 43
Hansenula_polymorpha_v2.0 31 31
Dekkera_bruxellensis_CBS_2499_v2.0 27 27
Pichia_membranifaciensv1.0 31 30
Candida_tanzawaensis_NRRL_Y-17324__v1.0 34 32
Candida_dubliniensis_CD36_ 33 30
Candida_tropicalis_MYA-3404_ 35 32
Candida_parapsilosis_ 30 30
Candida_albicans_SC5314 35 33
Lodderomyces_elongisporus_NRRL_YB-4239_ 27 27
Babjeviella_inositovora_NRRL_Y-12698_v1.0 33 33
Pichia_stipitis_CBS_6054_ 32 30
Candida_guilliermondii_ATCC_6260_ 32 32
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 36 34
Debaromyces_hansenii 35 33
Wickerhamomyces_anomalus 37 36
Pichia_pastoris_GS115_ 30 29
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 22 22
Yarrowia_lipolytica_CLIB122 40 39
Candida_lusitaniae_ATCC_42720_ 35 34
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 29 28
Vanderwaltozyma_polyspora_DSM_70294_ 35 34
Candida_glabrata_CBS138 38 37
Kluyveromyces_thermotolerans_CBS_6340 34 33
Lachancea_kluyveri_ 33 32
Kluyveromyces_waltii 31 30
Ashbya_gossypii_ATCC_10895_ 34 33
Zygosaccharomyces_rouxii_ 32 31
Saccharomyces_mikatae_MIT 38 37
Saccharomyces_paradoxus_MIT 41 40
Saccharomyces_cerevisiae_76   (Baker's yeast)   41 40
Saccharomyces_bayanus_MIT 39 38
Kluyveromyces_lactis 31 30
Schizosaccharomyces_cryophilus_OY26_22 36 34
Schizosaccharomyces_octosporus_yFS286_ 35 33
Schizosaccharomyces_japonicus_yFS275_ 32 31
Schizosaccharomyces_pombe   (Fission yeast)   37 35
Catenaria_anguillulae_PL171_v1.0 70 68
Allomyces_macrogynus_ATCC_38327_ 117 115
Spizellomyces_punctatus_DAOM_BR117_ 82 77
Dictyostelium_discoideum 156 140
Dictyostelium_purpureum_ 158 140
Entamoeba_dispar_1.2 121 112
Entamoeba_invadens_1.2 131 121
Entamoeba_histolytica_1 118 107
Selaginella_moellendorffii_ 69 69
Pinus_taeda   (Loblolly pine)   23 22
Picea_abies   (Norway spruce)   17 17
Eucalyptus_grandis_v201   (Rose gum)   78 78
Theobroma_cacao_B97-61/B2_v1   (Cacao)   50 50
Gossypium_raimondii_v221 289 289
Citrus_clementina_v165 77 77
Citrus_sinensis_v154   (Sweet orange)   129 129
Thellungiella_halophila_v173 77 77
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   92 92
Capsella_rubella_v183 71 71
Arabidopsis_lyrata_   (Lyrate rockcress)   67 67
Arabidopsis_thaliana_10   (Thale cress)   86 86
Carica_papaya_   (Papaya)   41 41
Medicago_truncatula_   (Barrel medic)   90 90
Phaseolus_vulgaris_v186   (French bean)   71 71
Glycine_max_v109   (Soybean)   123 123
Cucumis_sativus_v122   (Cucumber)   66 66
Fragaria_vesca_   (Wild strawberry)   51 51
Malus_domestica_v196   (Apple)   97 97
Prunus_persica_v139   (Peach)   49 49
Linum_usitatissimum_v200   (Flax)   94 94
Manihot_esculenta_v147   (Cassava)   84 84
Populus_trichocarpa_v156   (Black cottonwood)   96 96
Vitis_vinifera_   (Wine grape)   52 52
Mimulus_guttatus_v140   (Spotted monkey flower)   56 56
Solanum_lycopersicum_v.2.3   (Tomato)   66 66
Solanum_tuberosum_   (Potato)   68 68
Actinidia_chinensis_Hongyang_ 67 66
Aquilegia_coerulea_v195 98 98
Triticum_urartu_22 46 46
Triticum_aestivum_22   (Bread wheat)   147 147
Aegilops_tauschii_22 52 49
Brachypodium_distachyon_   (Stiff brome)   84 84
Oryza_barthii_22   (African wild rice)   83 81
Oryza_meridionalis_22 103 103
Oryza_glumaepatula_22 116 116
Oryza_glaberrima   (African rice)   46 46
Oryza_punctata_22 107 107
Oryza_nivara_22 112 112
Oryza_brachyantha_22   (Malo sina)   55 55
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   75 75
Oryza_sativa_v193   (Rice)   73 73
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   80 76
Panicum_virgatum_v202   (Switchgrass)   117 117
Setaria_italica_v164   (Foxtail millet)   71 71
Zea_mays_subsp._mays_   (Maize)   105 105
Zea_mays_v181   (Maize)   121 121
Sorghum_bicolor_   (Sorghum)   59 58
Musa_balbisiana   (Balbis banana)   71 70
Musa_acuminata_22   (Wild Malaysian banana)   82 82
Amborella_trichopoda_22 38 38
Physcomitrella_patens 69 69
Coccomyxa_subellipsoidea_sp._C-169_v2 17 17
Asterochloris_sp._Cgr/DA1pho_v1.0 20 20
Chlorella_variabilis_sp._NC64A_ 19 19
Chlorella_vulgaris_ 19 19
Volvox_carteri_f._nagariensis_ 17 17
Volvox_carteri_v199 17 17
Chlamydomonas_reinhardtii_4.0 18 17
Ostreococcus_sp._RCC809_ 13 13
Ostreococcus_lucimarinus_CCE9901_ 16 16
Ostreococcus_tauri_ 13 13
Bathycoccus_prasinos_ 14 14
Micromonas_sp._RCC299_ 23 23
Micromonas_pusilla_CCMP1545_v3.0 22 21
Cyanidioschyzon_merolae_strain_10D_22 9 9
Cyanidioschyzon_merolae 9 9
Porphyridium_purpureum_02_2012 37 37
Thecamonas_trahens_ATCC_50062_ 220 175
Bigelowiella_natans_CCMP2755_22 198 179
Giardia_lamblia_2.3 5 5
Cyanophora_paradoxa_ 28 28
Leishmania_mexicana_2.4 24 23
Leishmania_major_strain_Friedlin_ 24 23
Leishmania_infantum_JPCM5_2.4 23 22
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 24 23
Trypanosoma_vivax_ 19 18
Trypanosoma_cruzi_strain_CL_Brener 33 32
Trypanosoma_congolense_2.4 23 23
Trypanosoma_brucei_gambiense_v4.1 21 20
Trypanosoma_brucei_TREU927_v4.1 22 21
Ectocarpus_siliculosus 85 83
Aureococcus_anophagefferens_ 68 57
Albugo_laibachii_22 219 178
Pythium_iwayamai_DAOM_BR242034_22 209 173
Pythium_arrhenomanes_ATCC_12531_22 180 151
Pythium_ultimum_v1.7-2 232 182
Pythium_aphanidermatum_DAOM_BR444_22 198 167
Pythium_irregulare_DAOM_BR486_22 244 200
Pythium_vexans_DAOM_BR484_22 201 166
Phytophthora_ramorum_1.1   (Sudden oak death agent)   215 167
Phytophthora_sojae_1.1 219 171
Phytophthora_infestans_T30-4_ 236 193
Phytophthora_capsici_ 148 125
Hyaloperonospora_arabidopsidis_22 150 120
Phaeodactylum_tricornutumCCAP_1055/1 26 24
Fragilariopsis_cylindrus 55 51
Thalassiosira_pseudonana_CCMP1335 32 29
Perkinsus_marinus_ATCC_50983_ 20 20
Paramecium_tetraurelia_ 187 177
Tetrahymena_thermophila_SB210_1_ 79 71
Ichthyophthirius_multifiliis_strain_G5_ 23 22
Cryptosporidium_hominis 16 16
Cryptosporidium_muris 22 22
Cryptosporidium_parvum_Iowa_II 20 20
Neospora_caninum 20 20
Toxoplasma_gondii_VEG 21 21
Toxoplasma_gondii_ME49 23 23
Toxoplasma_gondii_GT1 19 19
Babesia_bovis_T2Bo_ 26 26
Theileria_parva__ 10 10
Theileria_annulata 13 13
Plasmodium_falciparum_3D7_ 19 19
Plasmodium_vivax_SaI-1_7.0 15 15
Plasmodium_knowlesi_strain_H_ 16 16
Plasmodium_yoelii_ssp._yoelii_1_ 15 15
Plasmodium_chabaudi_ 17 17
Plasmodium_berghei_ANKA_ 14 14
Symbiodinium_minutum_clade_B1_v1.2 70 65
Naegleria_gruberi_ 80 74
Trichomonas_vaginalis_ 181 180
Guillardia_theta_CCMP2712_v1.0_ 154 145
Emiliania_huxleyi_CCMP1516_ 102 95
Thermobaculum_terrenum_ATCC_BAA-798 1 1
Synechococcus_elongatus_PCC_7942 1 1
Rivularia_sp._PCC_7116 1 1
Slackia_heliotrinireducens_DSM_20476 1 1
Geodermatophilus_obscurus_DSM_43160 1 1
Stackebrandtia_nassauensis_DSM_44728 1 1
Streptosporangium_roseum_DSM_43021 1 1
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_sp._PAMC26508 1 1
Streptomyces_flavogriseus_ATCC_33331 1 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_scabiei_87.22 1 1
Actinosynnema_mirum_DSM_43827 1 1
Saccharomonospora_viridis_DSM_43017 1 1
Saccharopolyspora_erythraea_NRRL_2338 1 1
Microlunatus_phosphovorus_NM-1 1 1
Salinispora_arenicola_CNS-205 1 1
Salinispora_tropica_CNB-440 1 1
Verrucosispora_maris_AB-18-032 1 1
Micromonospora_sp._L5 1 1
Micromonospora_aurantiaca_ATCC_27029 1 1
Actinoplanes_sp._N902-109 1 1
Actinoplanes_sp._SE50/110 1 1
Actinoplanes_missouriensis_431 2 2
Rhodococcus_jostii_RHA1 2 2
Rhodococcus_opacus_B4 2 2
Nocardia_cyriacigeorgica_GUH-2 1 1
Nocardia_farcinica_IFM_10152 1 1
Corynebacterium_resistens_DSM_45100 1 1
Corynebacterium_jeikeium_K411 1 1
Corynebacterium_glutamicum_R 1 1
Corynebacterium_diphtheriae_NCTC_13129 1 1
Kytococcus_sedentarius_DSM_20547 1 1
Jonesia_denitrificans_DSM_20603 1 1
Intrasporangium_calvum_DSM_43043 1 1
Cellulomonas_fimi_ATCC_484 1 1
Arthrobacter_arilaitensis_Re117 1 1
Kocuria_rhizophila_DC2201 1 1
Arthrobacter_sp._Rue61a 1 1
Arthrobacter_sp._FB24 1 1
Mobiluncus_curtisii_ATCC_43063 1 1
Dehalococcoides_ethenogenes_195 1 1
Dehalococcoides_sp._BAV1 1 1
Herpetosiphon_aurantiacus_DSM_785 1 1
Roseiflexus_sp._RS-1 1 1
Roseiflexus_castenholzii_DSM_13941 1 1
Anaerococcus_prevotii_DSM_20548 1 1
Megamonas_hypermegale 1 1
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1 1
Clostridium_clariflavum_DSM_19732 2 2
Clostridium_cellulolyticum_H10 1 1
Faecalibacterium_prausnitzii 1 1
Thermaerobacter_marianensis_DSM_12885 1 1
Desulfitobacterium_hafniense_Y51 1 1
Desulfitobacterium_dehalogenans_ATCC_51507 1 1
Acetobacterium_woodii_DSM_1030 2 2
Clostridium_saccharolyticum_WM1 1 1
Clostridium_lentocellum_DSM_5427 2 2
Candidatus_Arthromitus_sp._SFB-mouse-Japan 1 1
Clostridium_sp._BNL1100 1 1
Clostridium_kluyveri_DSM_555 1 1
Clostridium_tetani_E88 1 1
Clostridium_cellulovorans_743B 3 3
Clostridium_botulinum_A_str._ATCC_3502 1 1
Thermosediminibacter_oceani_DSM_16646 1 1
Acetohalobium_arabaticum_DSM_5501 1 1
Halanaerobium_praevalens_DSM_2228 1 1
Carnobacterium_sp._17-4 2 2
Carnobacterium_sp._WN1359 2 2
Aerococcus_urinae_ACS-120-V-Col10a 1 1
Enterococcus_sp._7L76 1 1
Weissella_koreensis_KACC_15510 1 1
Lactococcus_lactis_subsp._cremoris_MG1363 1 1
Streptococcus_sp._I-P16 1 1
Streptococcus_sp._I-G2 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 1 1
Streptococcus_uberis_0140J 1 1
Streptococcus_parasanguinis_ATCC_15912 1 1
Streptococcus_agalactiae_A909 1 1
Streptococcus_thermophilus_LMD-9 1 1
Streptococcus_suis_P1/7 1 1
Streptococcus_sanguinis_SK36 1 1
Streptococcus_salivarius_57.I 1 1
Streptococcus_oralis_Uo5 1 1
Streptococcus_gordonii_str._Challis_substr._CH1 1 1
Exiguobacterium_sp._MH3 1 1
Exiguobacterium_sp._AT1b 2 2
Exiguobacterium_sibiricum_255-15 2 2
Brevibacillus_brevis_NBRC_100599 2 2
Paenibacillus_sp._JDR-2 1 1
Paenibacillus_mucilaginosus_3016 2 2
Listeria_innocua_Clip11262 1 1
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 1 1
Listeria_ivanovii_subsp._ivanovii_PAM_55 1 1
Solibacillus_silvestris_StLB046 2 2
Lysinibacillus_sphaericus_C3-41 2 2
Oceanobacillus_iheyensis_HTE831 1 1
Geobacillus_thermoleovorans_CCB_US3_UF5 1 1
Geobacillus_kaustophilus_HTA426 1 1
Geobacillus_sp._GHH01 1 1
Geobacillus_sp._WCH70 1 1
Geobacillus_thermodenitrificans_NG80-2 1 1
Halobacillus_halophilus_DSM_2266 2 2
Bacillus_sp._JS 2 2
Bacillus_sp._1NLA3E 1 1
Bacillus_amyloliquefaciens_FZB42 2 2
Bacillus_atrophaeus_1942 2 2
Bacillus_subtilis_subsp._subtilis_str._168 3 3
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_halodurans_C-125 1 1
Bacillus_weihenstephanensis_KBAB4 2 2
Bacillus_thuringiensis_str._Al_Hakam 2 2
Bacillus_cereus_03BB102 2 2
Bacillus_anthracis_str._A0248 2 2
Bacillus_pseudofirmus_OF4 1 1
Bacillus_pumilus_SAFR-032 1 1
Bacillus_megaterium_DSM_319 2 2
Chitinophaga_pinensis_DSM_2588 1 1
Flexibacter_litoralis_DSM_6794 1 1
Cyclobacterium_marinum_DSM_745 1 1
Marivirga_tractuosa_DSM_4126 1 1
Owenweeksia_hongkongensis_DSM_17368 1 1
Zunongwangia_profunda_SM-A87 1 1
Gramella_forsetii_KT0803 1 1
Aequorivita_sublithincola_DSM_14238 1 1
Cellulophaga_algicola_DSM_14237 1 1
Cellulophaga_lytica_DSM_7489 1 1
Polaribacter_sp._MED152 1 1
Weeksella_virosa_DSM_16922 1 1
Flavobacterium_psychrophilum_JIP02/86 1 1
Flavobacterium_branchiophilum_FL-15 1 1
Flavobacterium_johnsoniae_UW101 1 1
Sebaldella_termitidis_ATCC_33386 1 1
Syntrophus_aciditrophicus_SB 1 1
Desulfotalea_psychrophila_LSv54 1 1
Desulfovibrio_piezophilus 1 1
Desulfovibrio_salexigens_DSM_2638 1 1
Pelobacter_propionicus_DSM_2379 1 1
Ramlibacter_tataouinensis_TTB310 1 1
Polaromonas_naphthalenivorans_CJ2 1 1
Sphingopyxis_alaskensis_RB2256 1 1
Methylobacterium_chloromethanicum_CM4 1 1
Methylobacterium_extorquens_AM1 1 1
Methylobacterium_sp._4-46 1 1
Methylobacterium_populi_BJ001 1 1
Methylobacterium_nodulans_ORS_2060 1 1
Methylobacterium_radiotolerans_JCM_2831 1 1
Mesorhizobium_sp._BNC1 1 1
Vibrio_sp._Ex25 1 1
Vibrio_harveyi_ATCC_BAA-1116 1 1
Vibrio_parahaemolyticus_RIMD_2210633 1 1
Photobacterium_profundum_SS9 1 1
Ferrimonas_balearica_DSM_9799 1 1
Shewanella_piezotolerans_WP3 1 1
Shewanella_loihica_PV-4 1 1
Shewanella_halifaxensis_HAW-EB4 1 1
Shewanella_sediminis_HAW-EB3 1 1
Shewanella_pealeana_ATCC_700345 1 1
Shewanella_oneidensis_MR-1 1 1
Shewanella_baltica_OS185 1 1
Shewanella_woodyi_ATCC_51908 1 1
Shewanella_sp._MR-4 1 1
Shewanella_amazonensis_SB2B 1 1
Shewanella_violacea_DSS12 1 1
Pseudoalteromonas_sp._SM9913 1 1
Pseudoalteromonas_atlantica_T6c 1 1
Pseudoalteromonas_haloplanktis_TAC125 1 1
Glaciecola_sp._4H-3-7+YE-5 1 1
Glaciecola_nitratireducens_FR1064 1 1
Alteromonas_sp._SN2 1 1
Alteromonas_macleodii_str._'Deep_ecotype' 1 1
Pseudomonas_sp._TKP 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1 1
Pseudomonas_fluorescens_SBW25 1 1
Pseudomonas_mendocina_ymp 1 1
Hyperthermus_butylicus_DSM_5456 1 1
Methanohalobium_evestigatum_Z-7303 1 1
Methanohalophilus_mahii_DSM_5219 1 1
Pyrococcus_yayanosii_CH1 1 1
Methanobrevibacter_sp._AbM4 1 1
Methanobrevibacter_smithii_ATCC_35061 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   715 632
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   449 411
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   197 172
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   148 136
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   248 231
Cryptococcus_neoformans_var._grubii_H99_ 43 41
Cryptococcus_neoformans_B-3501A_ 45 44
Cryptococcus_neoformans_JEC21_ 43 42
Paracoccidioides_brasiliensis_Pb01_ 41 40
Paracoccidioides_brasiliensis_Pb03_ 40 39
Coccidioides_posadasii_str._Silveira_ 38 38
Coccidioides_immitis_RMSCC_3703_ 32 32
Coccidioides_immitis_RMSCC_2394_ 37 37
Coccidioides_immitis_H538.4_ 35 35
Ajellomyces_dermatitidis_ER-3_ 40 39
Histoplasma_capsulatum_H143 36 35
Histoplasma_capsulatum_H88 41 40
Histoplasma_capsulatum_G186AR 41 40
Aspergillus_fumigatus_A1163_ 39 37
Candida_albicans_WO-1_ 35 33
Saccharomyces_cerevisiae_UC5 29 28
Saccharomyces_cerevisiae_PW5 35 34
Saccharomyces_cerevisiae_FL100 20 19
Saccharomyces_cerevisiae_CLIB382 3 3
Saccharomyces_cerevisiae_CLIB324 15 14
Saccharomyces_cerevisiae_CBS7960 30 29
Saccharomyces_cerevisiae_YJM269 30 29
Saccharomyces_cerevisiae_T7 39 38
Saccharomyces_cerevisiae_FostersB 27 26
Saccharomyces_cerevisiae_FostersO 19 19
Saccharomyces_cerevisiae_VL3 27 26
Saccharomyces_cerevisiae_Vin13 22 21
Saccharomyces_cerevisiae_LalvinQA23 20 20
Saccharomyces_cerevisiae_AWRI796 24 23
Saccharomyces_cerevisiae_Sigma1278b 38 37
Saccharomyces_cerevisiae_W303 38 37
Saccharomyces_cerevisiae_JAY291 38 37
Saccharomyces_cerevisiae_AWRI1631 27 26
Saccharomyces_cerevisiae_YPS163 6 5
Saccharomyces_cerevisiae_M22 10 9
Saccharomyces_cerevisiae_T73 11 11
Saccharomyces_cerevisiae_CLIB215 34 33
Saccharomyces_cerevisiae_Y10 7 6
Saccharomyces_cerevisiae_YJM789_ 41 40
Saccharomyces_cerevisiae_YJM789 40 39
Saccharomyces_cerevisiae_RM11-1a 39 38
Saccharomyces_cerevisiae_RM11-1a_ 39 38
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   41 40
Schizosaccharomyces_pombe_972h-_ 37 35
Batrachochytrium_dendrobatidis_JEL423_ 48 47
Batrachochytrium_dendrobatidis_JAM81_ 45 44
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   48 48
Hordeum_vulgare_22   (Domesticated barley)   106 106
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   60 60
Trypanosoma_brucei_Lister_427_v4.1 22 21
Neospora_caninum_Nc-Liverpool_6.2 20 20
Plasmodium_falciparum_HB3_ 17 17
Plasmodium_falciparum_Dd2_ 13 13
Chamaesiphon_minutus_PCC_6605 1 1
Synechococcus_elongatus_PCC_6301 1 1
Cyanobacterium_aponinum_PCC_10605 1 1
Stanieria_cyanosphaera_PCC_7437 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1 1
Anabaena_cylindrica_PCC_7122 1 1
Streptomyces_albus_J1074 1 1
Streptomyces_davawensis_JCM_4913 1 1
Streptomyces_fulvissimus_DSM_40593 1 1
Streptomyces_venezuelae_ATCC_10712 1 1
Saccharothrix_espanaensis_DSM_44229 1 1
Amycolatopsis_orientalis_HCCB10007 1 1
Actinoplanes_friuliensis_DSM_7358 1 1
Nocardia_brasiliensis_ATCC_700358 2 2
Corynebacterium_maris_DSM_45190 1 1
Corynebacterium_ulcerans_BR-AD22 1 1
Corynebacterium_ulcerans_809 1 1
Corynebacterium_callunae_DSM_20147 1 1
Corynebacterium_glutamicum_SCgG2 1 1
Corynebacterium_glutamicum_SCgG1 1 1
Corynebacterium_diphtheriae_VA01 1 1
Corynebacterium_diphtheriae_HC04 1 1
Corynebacterium_diphtheriae_HC03 1 1
Corynebacterium_diphtheriae_CDCE_8392 1 1
Clavibacter_michiganensis_subsp._sepedonicus 1 1
Dehalococcoides_mccartyi_GY50 1 1
Dehalococcoides_mccartyi_DCMB5 1 1
Dehalococcoides_mccartyi_BTF08 1 1
Dehalococcoides_sp._GT 1 1
Dehalococcoides_sp._CBDB1 1 1
Faecalibacterium_prausnitzii_L2-6 1 1
Desulfosporosinus_meridiei_DSM_13257 1 1
Desulfitobacterium_hafniense_DCB-2 1 1
Desulfotomaculum_gibsoniae_DSM_7213 1 1
Candidatus_Arthromitus_sp._SFB-rat-Yit 1 1
Candidatus_Arthromitus_sp._SFB-mouse-Yit 1 1
Clostridium_kluyveri_NBRC_12016 1 1
Clostridium_tetani_genome_12124569 1 1
Clostridium_botulinum_H04402_065 1 1
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_E3_str._Alaska_E43 1 1
Clostridium_botulinum_B1_str._Okra 1 1
Clostridium_botulinum_Ba4_str._657 1 1
Clostridium_botulinum_A2_str._Kyoto 1 1
Clostridium_botulinum_A3_str._Loch_Maree 1 1
Clostridium_botulinum_A_str._Hall 1 1
Clostridium_botulinum_A_str._ATCC_19397 1 1
Carnobacterium_maltaromaticum_LMA28 1 1
Enterococcus_mundtii_QU_25 1 1
Enterococcus_faecalis_str._Symbioflor_1 1 1
Enterococcus_faecalis_OG1RF 1 1
Enterococcus_faecalis_V583 1 1
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 1 1
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 1 1
Lactococcus_lactis_subsp._lactis_CV56 1 1
Lactococcus_lactis_subsp._lactis_KF147 1 1
Lactococcus_lactis_subsp._cremoris_A76 1 1
Lactococcus_lactis_subsp._cremoris_NZ9000 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_167 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 1 1
Streptococcus_oligofermentans_AS_1.3089 1 1
Streptococcus_iniae_SF1 1 1
Streptococcus_parasanguinis_FW213 1 1
Streptococcus_agalactiae_ILRI112 1 1
Streptococcus_agalactiae_ILRI005 1 1
Streptococcus_agalactiae_09mas018883 1 1
Streptococcus_agalactiae_2-22 1 1
Streptococcus_agalactiae_GD201008-001 1 1
Streptococcus_agalactiae_NEM316 1 1
Streptococcus_agalactiae_2603V/R 1 1
Streptococcus_thermophilus_MN-ZLW-002 1 1
Streptococcus_thermophilus_JIM_8232 1 1
Streptococcus_thermophilus_ND03 1 1
Streptococcus_thermophilus_CNRZ1066 1 1
Streptococcus_thermophilus_LMG_18311 1 1
Streptococcus_suis_T15 1 1
Streptococcus_suis_TL13 1 1
Streptococcus_suis_SC070731 1 1
Streptococcus_suis_S735 1 1
Streptococcus_suis_ST3 1 1
Streptococcus_suis_D9 1 1
Streptococcus_suis_SS12 1 1
Streptococcus_suis_D12 1 1
Streptococcus_suis_ST1 1 1
Streptococcus_suis_A7 1 1
Streptococcus_suis_JS14 1 1
Streptococcus_suis_BM407 1 1
Streptococcus_suis_SC84 1 1
Streptococcus_suis_GZ1 1 1
Streptococcus_suis_98HAH33 1 1
Streptococcus_suis_05ZYH33 1 1
Streptococcus_salivarius_CCHSS3 1 1
Streptococcus_salivarius_JIM8777 1 1
Exiguobacterium_antarcticum_B7 2 2
Thermobacillus_composti_KWC4 1 1
Paenibacillus_mucilaginosus_KNP414 2 2
Paenibacillus_mucilaginosus_K02 2 2
Listeria_monocytogenes_EGD_sequence 1 1
Listeria_monocytogenes_N53-1 1 1
Listeria_monocytogenes_La111 1 1
Listeria_monocytogenes_serotype_4b_str._LL195 1 1
Listeria_monocytogenes_07PF0776 1 1
Listeria_monocytogenes_M7 1 1
Listeria_monocytogenes_J1-220 1 1
Listeria_monocytogenes_J1816 1 1
Listeria_monocytogenes_SLCC2376 1 1
Listeria_monocytogenes_SLCC5850 1 1
Listeria_monocytogenes_ATCC_19117 1 1
Listeria_monocytogenes_L312 1 1
Listeria_monocytogenes_SLCC2479 1 1
Listeria_monocytogenes_SLCC7179 1 1
Listeria_monocytogenes_SLCC2540 1 1
Listeria_monocytogenes_SLCC2378 1 1
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 1 1
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 1 1
Listeria_monocytogenes_serotype_7_str._SLCC2482 1 1
Listeria_monocytogenes_08-5578 1 1
Listeria_monocytogenes_08-5923 1 1
Listeria_monocytogenes_L99 1 1
Listeria_monocytogenes_HCC23 1 1
Listeria_monocytogenes_10403S 1 1
Listeria_monocytogenes_J0161 1 1
Listeria_monocytogenes_Finland_1998 1 1
Listeria_monocytogenes_FSL_R2-561 1 1
Listeria_monocytogenes_serotype_4b_str._F2365 1 1
Listeria_monocytogenes_EGD-e 1 1
Geobacillus_sp._C56-T3 1 1
Geobacillus_sp._Y412MC52 1 1
Geobacillus_sp._Y412MC61 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 2 2
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 2 2
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 2 2
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 2 2
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 2 2
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 2 2
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 2 2
Bacillus_amyloliquefaciens_LFB112 2 2
Bacillus_amyloliquefaciens_CC178 2 2
Bacillus_amyloliquefaciens_Y2 2 2
Bacillus_amyloliquefaciens_IT-45 2 2
Bacillus_amyloliquefaciens_XH7 2 2
Bacillus_amyloliquefaciens_LL3 2 2
Bacillus_amyloliquefaciens_TA208 2 2
Bacillus_amyloliquefaciens_DSM_7 2 2
Bacillus_licheniformis_9945A 1 1
Bacillus_subtilis_PY79 3 3
Bacillus_subtilis_XF-1 3 3
Bacillus_subtilis_QB928 3 3
Bacillus_subtilis_BSn5 3 3
Bacillus_subtilis_subsp._subtilis_str._BAB-1 3 3
Bacillus_subtilis_subsp._subtilis_str._BSP1 3 3
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 3 3
Bacillus_subtilis_subsp._subtilis_6051-HGW 3 3
Bacillus_subtilis_subsp._spizizenii_TU-B-10 3 3
Bacillus_subtilis_subsp._spizizenii_str._W23 3 3
Bacillus_subtilis_subsp._natto_BEST195 3 3
Bacillus_infantis_NRRL_B-14911 1 1
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 1 1
Bacillus_toyonensis_BCT-7112 1 1
Bacillus_thuringiensis_HD-771 2 2
Bacillus_thuringiensis_HD-789 2 2
Bacillus_thuringiensis_MC28 2 2
Bacillus_thuringiensis_serovar_chinensis_CT-43 2 2
Bacillus_thuringiensis_YBT-1518 2 2
Bacillus_thuringiensis_Bt407 2 2
Bacillus_thuringiensis_serovar_konkukian_str._97-27 2 2
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 2 2
Bacillus_thuringiensis_BMB171 2 2
Bacillus_thuringiensis_serovar_finitimus_YBT-020 2 2
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 2 2
Bacillus_cereus_FRI-35 2 2
Bacillus_cereus_biovar_anthracis_str._CI 2 2
Bacillus_cereus_AH820 2 2
Bacillus_cereus_AH187 2 2
Bacillus_cereus_B4264 2 2
Bacillus_cereus_G9842 2 2
Bacillus_cereus_Q1 2 2
Bacillus_cereus_F837/76 2 2
Bacillus_cereus_NC7401 2 2
Bacillus_cereus_E33L 3 3
Bacillus_cereus_ATCC_14579 2 2
Bacillus_cereus_ATCC_10987 1 1
Bacillus_anthracis_str._H9401 2 2
Bacillus_anthracis_str._CDC_684 2 2
Bacillus_anthracis_str._'Ames_Ancestor' 2 2
Bacillus_anthracis_str._Sterne 2 2
Bacillus_anthracis_str._Ames 2 2
Bacillus_megaterium_WSH-002 2 2
Bacillus_megaterium_QM_B1551 2 2
Echinicola_vietnamensis_DSM_17526 1 1
Nonlabens_dokdonensis_DSW-6 1 1
Psychroflexus_torquis_ATCC_700755 1 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2 2
Desulfovibrio_desulfuricans_ND132 1 1
Neisseria_meningitidis_WUE_2594 1 1
Neisseria_gonorrhoeae_FA_1090 1 1
Variovorax_paradoxus_B4 1 1
Methylobacterium_extorquens_DM4 1 1
Methylobacterium_extorquens_PA1 1 1
Vibrio_sp._EJY3 1 1
Vibrio_parahaemolyticus_BB22OP 1 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 1 1
Shewanella_sp._ANA-3 1 1
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS678 1 1
Shewanella_baltica_OS117 1 1
Shewanella_baltica_OS223 1 1
Shewanella_baltica_OS195 1 1
Shewanella_baltica_OS155 1 1
Shewanella_sp._MR-7 1 1
Glaciecola_psychrophila_170 1 1
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 1 1
Alteromonas_macleodii_str._'English_Channel_615' 1 1
Alteromonas_macleodii_AltDE1 1 1
Alteromonas_macleodii_str._'English_Channel_673' 1 1
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 1 1
Alteromonas_macleodii_str._'Black_Sea_11' 1 1
Alteromonas_macleodii_ATCC_27126 1 1
Pseudomonas_fluorescens_F113 1 1
Pseudomonas_fluorescens_A506 1 1
Acinetobacter_junii__SH205 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Pyrococcus_sp._NA2 1 1
Natronobacterium_gregoryi_SP2 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   532 451
Pan_troglodytes_69_2.1.4   (Chimpanzee)   446 381
Gorilla_gorilla_69_3.1   (Western gorilla)   490 418
Pongo_abelii_69_2   (Sumatran orangutan)   458 392
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   442 381
Macaca_mulatta_69_1   (Rhesus monkey)   461 394
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   492 422
Otolemur_garnettii_69_3   (Small-eared galago)   468 400
Microcebus_murinus_69_1   (Gray mouse lemur)   374 321
Rattus_norvegicus_69_3.4   (Norway rat)   481 410
Mus_musculus_69_38   (House mouse)   488 412
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   409 349
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   422 360
Cavia_porcellus_69_3   (Domestic guinea pig)   460 390
Oryctolagus_cuniculus_69_2   (Rabbit)   445 378
Ochotona_princeps_69   (American pika)   391 328
Tupaia_belangeri_69   (Northern tree shrew)   334 296
Sus_scrofa_69_10.2   (Pig)   464 404
Bos_taurus_69_3.1   (Cattle)   470 402
Vicugna_pacos_69_1   (Alpaca)   255 219
Tursiops_truncatus_69_1   (Bottlenose dolphin)   434 371
Mustela_putorius_furo_69_1.0   (Domestic ferret)   468 397
Ailuropoda_melanoleuca_69_1   (Giant panda)   469 399
Canis_familiaris_69_3.1   (Dog)   480 408
Felis_catus_69   (Domestic cat)   338 293
Equus_caballus_69_2   (Horse)   459 394
Myotis_lucifugus_69_2.0   (Little brown bat)   427 364
Pteropus_vampyrus_69_1   (Large flying fox)   443 381
Sorex_araneus_69_1   (European shrew)   271 239
Erinaceus_europaeus_69   (Western European hedgehog)   330 286
Procavia_capensis_69_1   (Cape rock hyrax)   387 330
Loxodonta_africana_69_3   (African savanna elephant)   469 403
Echinops_telfairi_69   (Small Madagascar hedgehog)   361 313
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   318 276
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   238 207
Macropus_eugenii_69_1.0   (Tammar wallaby)   405 339
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   429 368
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   462 395
Ornithorhynchus_anatinus_69_5   (Platypus)   389 347
Petromyzon_marinus_69_7.0   (Sea lamprey)   230 199
Meleagris_gallopavo_69_2   (Turkey)   406 348
Gallus_gallus_69_2   (Chicken)   408 346
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   439 370
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   416 350
Anolis_carolinensis_69_2.0   (Green anole)   423 362
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   446 382
Latimeria_chalumnae_69_1   (Coelacanth)   472 405
Gadus_morhua_69_1   (Atlantic cod)   576 497
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   641 548
Takifugu_rubripes_69_4   (Torafugu)   619 528
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   587 506
Oryzias_latipes_69_1   (Japanese medaka)   557 473
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   638 537
Oreochromis_niloticus_69_1.0   (Nile tilapia)   652 547
Danio_rerio_69_9   (Zebrafish)   662 564
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   139 127
Ciona_intestinalis_69   (Vase tunicate)   167 147
Drosophila_melanogaster_69_5   (Fruit fly)   166 148
Caenorhabditis_elegans_69_215   (Roundworm)   135 126
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   41 40
Arabidopsis_thaliana_10   (Thale cress)   66 66

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   2126 1891
Homo_sapiens__(NCBI_version)   (Human)   843 734
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   480 404
Heliconius_numata__(Incomplete) 20 20
Loa_loa_v3.3_(Request)   (Eye worm)   151 141
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   127 121
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   119 111
Moniliophthora_perniciosa_FA553__(Genome_survey) 19 19
Encephalitozoon_intestinalis__(endoparasite) 7 7
Encephalitozoon_cuniculi_(endoparasite) 7 7
Picea_sitchensis__(Incomplete)   (Sitka spruce)   3 3
Lotus_japonicus__(Early_assembly) 49 49
Malus_x_domestica_(Duplicate)   (Apple)   97 97
Ricinus_communis__(Early_assembly)   (Castor bean)   49 49
Nicotiana_benthamiana_0.4.4_(Early_draft) 103 100
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   65 65
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   66 66
Phoenix_dactylifera__(Early_draft)   (Date palm)   39 38
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1 1
NCBI_plasmid_sequences_(Plasmids) 1 1
NCBI_viral_sequences_(Viral) 2 2
Protein_Data_Bank_(all_PDB_sequenc) 1016 998
Protozoadb_2010_08_(Protozoadb) 1365 1315
UniProt__viral_sequences_(Viral) 8 8
PDB_chains_(SCOP_1.75)_(PDB) 146 145
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 2018 2018
STRING_v9.0.5_(STRING) 19619 17279
Uniprot_2018_03_genome 226141 203244
TargetDB__(Targets) 836 760
NCBI_2017_08_genome 382622 335655

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