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Domain combinations for Hemopexin-like domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Hemopexin-like domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   50 49
Pan_troglodytes_76_2.1.4   (Chimpanzee)   24 23
Gorilla_gorilla_76_3.1   (Western gorilla)   30 29
Pongo_abelii_76_2   (Sumatran orangutan)   21 20
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   29 27
Papio_anubis_76   (Olive baboon)   26 25
Macaca_mulatta_76_1   (Rhesus monkey)   27 26
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   39 38
Otolemur_garnettii_76_3   (Small-eared galago)   24 23
Microcebus_murinus_76_1   (Gray mouse lemur)   25 20
Rattus_norvegicus_76_5.0   (Norway rat)   27 26
Mus_musculus_76_38   (House mouse)   41 40
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   25 23
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   22 22
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   24 23
Cavia_porcellus_76_3   (Domestic guinea pig)   20 19
Oryctolagus_cuniculus_76_2   (Rabbit)   26 25
Ochotona_princeps_76   (American pika)   25 22
Tupaia_belangeri_76   (Northern tree shrew)   22 20
Sus_scrofa_76_10.2   (Pig)   25 24
Bos_taurus_76_3.1   (Cattle)   24 23
Ovis_aries_76_3.1   (Sheep)   26 25
Vicugna_pacos_76_1   (Alpaca)   10 9
Tursiops_truncatus_76_1   (Bottlenose dolphin)   20 19
Mustela_putorius_furo_76_1.0   (Domestic ferret)   24 23
Ailuropoda_melanoleuca_76_1   (Giant panda)   26 25
Canis_familiaris_76_3.1   (Dog)   26 25
Felis_catus_76_6.2   (Domestic cat)   24 23
Equus_caballus_76_2   (Horse)   24 23
Myotis_lucifugus_76_2.0   (Little brown bat)   23 22
Pteropus_vampyrus_76_1   (Large flying fox)   24 22
Sorex_araneus_76_1   (European shrew)   17 16
Erinaceus_europaeus_76   (Western European hedgehog)   19 18
Procavia_capensis_76_1   (Cape rock hyrax)   24 21
Loxodonta_africana_76_3   (African savanna elephant)   29 28
Echinops_telfairi_76   (Small Madagascar hedgehog)   21 18
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   26 25
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   12 11
Macropus_eugenii_76_1.0   (Tammar wallaby)   24 21
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   27 26
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   23 22
Ornithorhynchus_anatinus_76_5   (Platypus)   19 19
Saccoglossus_kowalevskii_v3.0 14 14
Petromyzon_marinus_76_7.0   (Sea lamprey)   9 9
Meleagris_gallopavo_76_2   (Turkey)   30 27
Gallus_gallus_76_4   (Chicken)   18 17
Anas_platyrhynchos_76_1.0   (Mallard)   19 19
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   13 13
Ficedula_albicollis_76_1.0   (Collared flycatcher)   15 15
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   19 19
Anolis_carolinensis_76_2.0   (Green anole)   19 19
Xenopus_laevis_   (African clawed frog)   60 60
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   35 34
Latimeria_chalumnae_76_1   (Coelacanth)   31 30
Lepisosteus_oculatus_76   (Spotted gar)   26 25
Gadus_morhua_76_1   (Atlantic cod)   31 28
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   40 37
Takifugu_rubripes_76_4   (Torafugu)   98 93
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   38 35
Oryzias_latipes_76_1   (Japanese medaka)   38 34
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   31 28
Poecilia_formosa_76   (Amazon molly)   39 35
Oreochromis_niloticus_76_1.0   (Nile tilapia)   44 40
Astyanax_mexicanus_76   (Mexican tetra)   36 32
Danio_rerio_76_9   (Zebrafish)   47 41
Oikopleura_dioica 3 3
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   20 20
Ciona_intestinalis_76   (Vase tunicate)   8 8
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   30 30
Adineta_vaga 11 11
Octopus_bimaculoides_280 9 9
Crassostrea_gigas_22   (Pacific oyster)   4 4
Lottia_gigantea_   (Owl limpet)   8 8
Helobdella_robusta_ 8 8
Capitella_sp._I_ 8 8
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3 3
Heliconius_melpomene_   (Postman butterfly)   3 3
Bombyx_mori_   (Domestic silkworm)   3 3
Nasonia_vitripennis_   (Jewel wasp)   2 2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   7 7
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2 2
Linepithema_humile_v1.1   (Argentine ant)   2 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   4 4
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   9 9
Atta_cephalotes_v1.1 2 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   8 8
Lucilia_cuprina   (Australian sheep blowfly)   2 2
Drosophila_grimshawi_1.3 2 2
Drosophila_willistoni_1.3 2 2
Drosophila_pseudoobscura_2.13 2 2
Drosophila_persimilis_1.3 2 2
Drosophila_suzukii 2 2
Drosophila_yakuba_1.3 2 2
Drosophila_simulans_1.3 2 2
Drosophila_sechellia_1.3 2 2
Drosophila_melanogaster_76_5   (Fruit fly)   11 11
Drosophila_erecta_1.3 2 2
Drosophila_ananassae_1.3 2 2
Drosophila_virilis_1.2 2 2
Drosophila_mojavensis_1.3 2 2
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   8 8
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   8 8
Anopheles_darlingi_22   (American malaria mosquito)   3 3
Anopheles_gambiae_49_3j   (African malaria mosquito)   5 5
Tribolium_castaneum_3.0   (Red flour beetle)   11 10
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2 2
Acyrthosiphon_pisum_   (Pea aphid)   3 3
Rhodnius_prolixus_22 6 6
Daphnia_pulex_   (Common water flea)   4 4
Strigamia_maritima_22 4 4
Sarcoptes_scabiei 3 3
Tetranychus_urticae_   (Two-spotted spider mite)   3 3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   2 2
Pristionchus_pacificus_ 6 6
Onchocerca_volvulus_22 4 4
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   4 4
Caenorhabditis_japonica_ 5 5
Caenorhabditis_brenneri_ 6 6
Caenorhabditis_remanei_ 6 6
Caenorhabditis_elegans_76_235   (Roundworm)   7 7
Caenorhabditis_briggsae_2 6 6
Trichinella_spiralis_22 2 2
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 1 1
Echinococcus_granulosus_ 1 1
Taenia_solium_   (Pork tapeworm)   1 1
Schistosoma_mansoni_ 2 2
Mnemiopsis_leidyi   (Sea walnut)   17 16
Acropora_digitifera_v1.0 5 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   7 7
Hydra_vulgaris 10 10
Amphimedon_queenslandica 1 1
Capsaspora_owczarzaki_ATCC_30864_ 3 3
Sphaerobolus_stellatus_v1.0 1 1
Pleurotus_ostreatus_   (Oyster mushroom)   1 1
Hebeloma_cylindrosporum_h7_v2.0 5 5
Gloeophyllum_trabeumv1.0 1 1
Postia_placenta_ 7 7
Coccidioides_posadasii_RMSCC_3488_ 1 1
Coccidioides_immitis_RS_ 1 1
Uncinocarpus_reesii_1704_ 1 1
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_nidulans_FGSC_A4_ 1 1
Aspergillus_sydowii_v1.0 1 1
Aspergillus_glaucus 1 1
Aspergillus_terreus_NIH2624_ 1 1
Aspergillus_wentii_v1.0 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Pinus_taeda   (Loblolly pine)   2 2
Picea_abies   (Norway spruce)   1 1
Medicago_truncatula_   (Barrel medic)   24 20
Phaseolus_vulgaris_v186   (French bean)   26 24
Actinidia_chinensis_Hongyang_ 1 1
Triticum_urartu_22 1 1
Aegilops_tauschii_22 1 1
Oryza_barthii_22   (African wild rice)   1 1
Oryza_meridionalis_22 1 1
Oryza_glaberrima   (African rice)   1 1
Oryza_nivara_22 1 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2 1
Oryza_sativa_v193   (Rice)   2 1
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1 1
Thecamonas_trahens_ATCC_50062_ 3 3
Leishmania_mexicana_2.4 1 1
Leishmania_major_strain_Friedlin_ 1 1
Leishmania_infantum_JPCM5_2.4 1 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1 1
Trypanosoma_cruzi_strain_CL_Brener 1 1
Frankia_alni_ACN14a 1 1
Nocardia_cyriacigeorgica_GUH-2 1 1
Maricaulis_maris_MCS10 1 1
Shewanella_denitrificans_OS217 8 1
Hahella_chejuensis_KCTC_2396 1 1
Photorhabdus_asymbiotica 3 2
Photorhabdus_luminescens_subsp._laumondii_TTO1 4 3
Xenorhabdus_bovienii_SS-2004 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   52 49
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   10 10
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   5 5
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   6 6
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   6 6
Coccidioides_posadasii_str._Silveira_ 1 1
Coccidioides_immitis_RMSCC_3703_ 1 1
Coccidioides_immitis_RMSCC_2394_ 1 1
Coccidioides_immitis_H538.4_ 1 1
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   28 27
Pan_troglodytes_69_2.1.4   (Chimpanzee)   22 21
Gorilla_gorilla_69_3.1   (Western gorilla)   24 23
Pongo_abelii_69_2   (Sumatran orangutan)   21 20
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   25 23
Macaca_mulatta_69_1   (Rhesus monkey)   25 24
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   24 23
Otolemur_garnettii_69_3   (Small-eared galago)   24 23
Microcebus_murinus_69_1   (Gray mouse lemur)   25 20
Rattus_norvegicus_69_3.4   (Norway rat)   26 25
Mus_musculus_69_38   (House mouse)   25 24
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   25 23
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   21 21
Cavia_porcellus_69_3   (Domestic guinea pig)   20 19
Oryctolagus_cuniculus_69_2   (Rabbit)   23 22
Ochotona_princeps_69   (American pika)   25 22
Tupaia_belangeri_69   (Northern tree shrew)   22 20
Sus_scrofa_69_10.2   (Pig)   22 21
Bos_taurus_69_3.1   (Cattle)   23 22
Vicugna_pacos_69_1   (Alpaca)   10 9
Tursiops_truncatus_69_1   (Bottlenose dolphin)   20 19
Mustela_putorius_furo_69_1.0   (Domestic ferret)   24 23
Ailuropoda_melanoleuca_69_1   (Giant panda)   25 24
Canis_familiaris_69_3.1   (Dog)   23 22
Felis_catus_69   (Domestic cat)   22 20
Equus_caballus_69_2   (Horse)   22 21
Myotis_lucifugus_69_2.0   (Little brown bat)   23 22
Pteropus_vampyrus_69_1   (Large flying fox)   24 22
Sorex_araneus_69_1   (European shrew)   17 16
Erinaceus_europaeus_69   (Western European hedgehog)   19 18
Procavia_capensis_69_1   (Cape rock hyrax)   24 21
Loxodonta_africana_69_3   (African savanna elephant)   25 24
Echinops_telfairi_69   (Small Madagascar hedgehog)   21 18
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   16 15
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   12 11
Macropus_eugenii_69_1.0   (Tammar wallaby)   24 21
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   23 22
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   23 22
Ornithorhynchus_anatinus_69_5   (Platypus)   19 19
Petromyzon_marinus_69_7.0   (Sea lamprey)   8 8
Meleagris_gallopavo_69_2   (Turkey)   16 15
Gallus_gallus_69_2   (Chicken)   16 16
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   13 13
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   17 17
Anolis_carolinensis_69_2.0   (Green anole)   19 19
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   28 27
Latimeria_chalumnae_69_1   (Coelacanth)   26 26
Gadus_morhua_69_1   (Atlantic cod)   28 25
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   29 27
Takifugu_rubripes_69_4   (Torafugu)   26 23
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   27 25
Oryzias_latipes_69_1   (Japanese medaka)   29 27
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   31 28
Oreochromis_niloticus_69_1.0   (Nile tilapia)   33 30
Danio_rerio_69_9   (Zebrafish)   35 31
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   8 8
Ciona_intestinalis_69   (Vase tunicate)   8 8
Drosophila_melanogaster_69_5   (Fruit fly)   2 2
Caenorhabditis_elegans_69_215   (Roundworm)   6 6

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   52 51
Homo_sapiens__(NCBI_version)   (Human)   29 28
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   25 24
Loa_loa_v3.3_(Request)   (Eye worm)   6 5
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3 3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   4 4
Lotus_japonicus__(Early_assembly) 7 7
Phoenix_dactylifera__(Early_draft)   (Date palm)   2 1
Protein_Data_Bank_(all_PDB_sequenc) 73 50
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 136 136
STRING_v9.0.5_(STRING) 763 722
Uniprot_2018_03_genome 6477 5945
UniProt__viral_sequences_(Viral) 15 15
NCBI_2017_08_genome 8947 8304
Protozoadb_2010_08_(Protozoadb) 5 5
TargetDB__(Targets) 19 19
PDB_chains_(SCOP_1.75)_(PDB) 11 10
NCBI_viral_sequences_(Viral) 18 18

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