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Domain combinations for alpha-D-mannose-specific plant lectins superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a alpha-D-mannose-specific plant lectins domain in that genome.

Complete genomes
Genome     Number   Proteins
Saccoglossus_kowalevskii_v3.0 2 1
Lepisosteus_oculatus_76   (Spotted gar)   2 2
Gadus_morhua_76_1   (Atlantic cod)   2 2
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   1 1
Takifugu_rubripes_76_4   (Torafugu)   2 2
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   3 3
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   2 2
Poecilia_formosa_76   (Amazon molly)   3 3
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1 1
Astyanax_mexicanus_76   (Mexican tetra)   2 2
Adineta_vaga 2 2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   12 12
Daphnia_pulex_   (Common water flea)   2 2
Mnemiopsis_leidyi   (Sea walnut)   10 8
Hydra_vulgaris 4 3
Sphaeroforma_arctica_JP610_ 8 7
Capsaspora_owczarzaki_ATCC_30864_ 1 1
Conidiobolus_coronatus_NRRL28638_v1.0 5 3
Mortierella_verticillata_NRRL_6337_ 2 2
Mixia_osmundae_IAM_14324_v1.0 1 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1 1
Melampsora_laricis-populina_ 2 2
Rhodotorula_graminis_WP1_v1.0 1 1
Sphaerobolus_stellatus_v1.0 1 1
Schizophyllum_commune_ 1 1
Stereum_hirsutum_FP-91666_SS1__v1.0 1 1
Neurospora_tetrasperma_ 1 1
Neurospora_crassa_OR74A_ 1 1
Fusarium_graminearum_ 3 3
Nectria_haematococca_mpVI_ 7 2
Fusarium_oxysporum_f._sp._lycopersici_4286_ 3 3
Fusarium_verticillioides_7600_ 2 2
Trichoderma_asperellum_CBS_433.97_v1.0 3 2
Trichoderma_atroviride_ 2 2
Trichoderma_citrinoviride_v1.0 2 1
Trichoderma_reesei_1.2 2 1
Trichoderma_virens_Gv29-8_ 1 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2 1
Trichoderma_harzianum_CBS_226.95_v1.0 2 1
Coccidioides_posadasii_RMSCC_3488_ 1 1
Coccidioides_immitis_RS_ 1 1
Aspergillus_zonatus_v1.0 2 2
Aspergillus_glaucus 1 1
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 1 1
Aspergillus_oryzae_RIB40_ 3 3
Aspergillus_flavus_NRRL3357_ 2 2
Allomyces_macrogynus_ATCC_38327_ 5 5
Dictyostelium_discoideum 5 5
Dictyostelium_purpureum_ 10 4
Selaginella_moellendorffii_ 230 225
Pinus_taeda   (Loblolly pine)   62 51
Picea_abies   (Norway spruce)   69 56
Eucalyptus_grandis_v201   (Rose gum)   370 345
Theobroma_cacao_B97-61/B2_v1   (Cacao)   142 127
Gossypium_raimondii_v221 155 141
Citrus_clementina_v165 155 147
Citrus_sinensis_v154   (Sweet orange)   173 160
Thellungiella_halophila_v173 51 48
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   82 73
Capsella_rubella_v183 46 44
Arabidopsis_lyrata_   (Lyrate rockcress)   66 64
Arabidopsis_thaliana_10   (Thale cress)   55 52
Carica_papaya_   (Papaya)   44 40
Medicago_truncatula_   (Barrel medic)   236 231
Phaseolus_vulgaris_v186   (French bean)   110 107
Glycine_max_v109   (Soybean)   164 155
Cucumis_sativus_v122   (Cucumber)   56 54
Fragaria_vesca_   (Wild strawberry)   130 112
Malus_domestica_v196   (Apple)   326 293
Prunus_persica_v139   (Peach)   109 103
Linum_usitatissimum_v200   (Flax)   125 115
Manihot_esculenta_v147   (Cassava)   130 118
Populus_trichocarpa_v156   (Black cottonwood)   290 261
Vitis_vinifera_   (Wine grape)   83 70
Mimulus_guttatus_v140   (Spotted monkey flower)   62 55
Solanum_lycopersicum_v.2.3   (Tomato)   102 94
Solanum_tuberosum_   (Potato)   149 135
Actinidia_chinensis_Hongyang_ 84 70
Aquilegia_coerulea_v195 101 98
Triticum_urartu_22 141 133
Triticum_aestivum_22   (Bread wheat)   265 263
Aegilops_tauschii_22 157 153
Brachypodium_distachyon_   (Stiff brome)   93 93
Oryza_barthii_22   (African wild rice)   183 132
Oryza_meridionalis_22 141 126
Oryza_glumaepatula_22 178 145
Oryza_glaberrima   (African rice)   109 106
Oryza_punctata_22 153 122
Oryza_nivara_22 188 150
Oryza_brachyantha_22   (Malo sina)   91 87
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   155 147
Oryza_sativa_v193   (Rice)   154 146
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   87 83
Panicum_virgatum_v202   (Switchgrass)   133 128
Setaria_italica_v164   (Foxtail millet)   90 85
Zea_mays_subsp._mays_   (Maize)   75 74
Zea_mays_v181   (Maize)   81 80
Sorghum_bicolor_   (Sorghum)   101 97
Musa_balbisiana   (Balbis banana)   89 74
Musa_acuminata_22   (Wild Malaysian banana)   69 62
Amborella_trichopoda_22 71 55
Physcomitrella_patens 11 9
Coccomyxa_subellipsoidea_sp._C-169_v2 2 2
Chlorella_vulgaris_ 2 2
Volvox_carteri_f._nagariensis_ 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Micromonas_pusilla_CCMP1545_v3.0 2 1
Bigelowiella_natans_CCMP2755_22 2 2
Ectocarpus_siliculosus 3 3
Fragilariopsis_cylindrus 10 8
Paramecium_tetraurelia_ 2 2
Tetrahymena_thermophila_SB210_1_ 10 4
Symbiodinium_minutum_clade_B1_v1.2 5 2
Naegleria_gruberi_ 11 9
Guillardia_theta_CCMP2712_v1.0_ 1 1
Emiliania_huxleyi_CCMP1516_ 5 4
Leptolyngbya_sp._PCC_7376 1 1
Synechococcus_sp._PCC_6312 1 1
Acidimicrobium_ferrooxidans_DSM_10331 1 1
Catenulispora_acidiphila_DSM_44928 4 4
Kitasatospora_setae_KM-6054 1 1
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_sp._PAMC26508 3 3
Streptomyces_flavogriseus_ATCC_33331 3 3
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 2 2
Actinoplanes_sp._N902-109 5 5
Actinoplanes_missouriensis_431 1 1
Segniliparus_rotundus_DSM_44985 1 1
Tsukamurella_paurometabola_DSM_20162 1 1
Rhodococcus_erythropolis_PR4 1 1
Nocardia_farcinica_IFM_10152 1 1
Mycobacterium_abscessus_ATCC_19977 1 1
Mycobacterium_ulcerans_Agy99 1 1
Mycobacterium_marinum_M 1 1
Mycobacterium_smegmatis_str._MC2_155 1 1
Cellulomonas_flavigena_DSM_20109 5 2
Cellulomonas_fimi_ATCC_484 5 2
[Cellvibrio]_gilvus_ATCC_13127 4 1
Arthrobacter_aurescens_TC1 1 1
Arthrobacter_sp._Rue61a 1 1
Arthrobacter_sp._FB24 2 1
Ruminococcus_albus_7 2 2
Brevibacillus_brevis_NBRC_100599 1 1
Paenibacillus_mucilaginosus_3016 6 5
Chlorobium_luteolum_DSM_273 1 1
Haliscomenobacter_hydrossis_DSM_1100 2 2
Spirochaeta_smaragdinae_DSM_11293 2 2
Candidatus_Solibacter_usitatus_Ellin6076 1 1
Granulicella_mallensis_MP5ACTX8 1 1
Terriglobus_saanensis_SP1PR4 1 1
Terriglobus_roseus_DSM_18391 2 1
Candidatus_Saccharibacteria_bacterium_RAAC3_TM7_1 1 1
Geobacter_daltonii_FRC-32 1 1
Geobacter_uraniireducens_Rf4 1 1
Geobacter_sulfurreducens_KN400 1 1
Geobacter_metallireducens_GS-15 1 1
Pelobacter_propionicus_DSM_2379 1 1
Sorangium_cellulosum_'So_ce_56' 2 2
Stigmatella_aurantiaca_DW4/3-1 1 1
Corallococcus_coralloides_DSM_2259 2 2
Chromobacterium_violaceum_ATCC_12472 1 1
Cupriavidus_metallidurans_CH34 2 1
Burkholderia_thailandensis_E264 2 1
Burkholderia_pseudomallei_1106a 2 1
Burkholderia_ambifaria_AMMD 2 1
Burkholderia_cenocepacia_HI2424 5 2
Asticcacaulis_excentricus_CB_48 1 1
Tistrella_mobilis_KA081020-065 1 1
Agrobacterium_vitis_S4 1 1
Xanthomonas_axonopodis_pv._citri_str._306 2 1
Pseudomonas_sp._UW4 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1 1
Pseudomonas_protegens_Pf-5 4 2
Francisella_philomiragia_subsp._philomiragia_ATCC_25017 1 1

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Strains
Genome     Number   Proteins
Coccidioides_posadasii_str._Silveira_ 1 1
Coccidioides_immitis_RMSCC_3703_ 1 1
Coccidioides_immitis_RMSCC_2394_ 1 1
Coccidioides_immitis_H538.4_ 1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   139 105
Hordeum_vulgare_22   (Domesticated barley)   252 239
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   167 156
Crinalium_epipsammum_PCC_9333 1 1
Anabaena_cylindrica_PCC_7122 1 1
Streptomyces_rapamycinicus_NRRL_5491 1 1
Streptomyces_fulvissimus_DSM_40593 1 1
Streptomyces_venezuelae_ATCC_10712 1 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2 2
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 2 2
Saccharothrix_espanaensis_DSM_44229 2 2
Actinoplanes_friuliensis_DSM_7358 4 3
Rhodococcus_erythropolis_CCM2595 1 1
Nocardia_brasiliensis_ATCC_700358 1 1
Mycobacterium_sp._JDM601 1 1
Mycobacterium_abscessus_subsp._bolletii_50594 1 1
Mycobacterium_liflandii_128FXT 1 1
Mycobacterium_smegmatis_str._MC2_155 1 1
Mycobacterium_kansasii_ATCC_12478 1 1
Ruminococcus_champanellensis_18P13 3 1
Paenibacillus_mucilaginosus_KNP414 2 2
Paenibacillus_mucilaginosus_K02 2 2
Paenibacillus_larvae_subsp._larvae_DSM_25430 1 1
Singulisphaera_acidiphila_DSM_18658 2 1
Geobacter_sulfurreducens_PCA 1 1
Sorangium_cellulosum_So0157-2 1 1
Burkholderia_sp._YI23 1 1
Burkholderia_sp._KJ006 2 1
Burkholderia_thailandensis_MSMB121 2 1
Burkholderia_pseudomallei_MSHR305 2 1
Burkholderia_pseudomallei_NCTC_13179 2 1
Burkholderia_pseudomallei_BPC006 2 1
Burkholderia_pseudomallei_1026b 2 1
Burkholderia_pseudomallei_668 2 1
Burkholderia_pseudomallei_1710b 2 1
Burkholderia_pseudomallei_K96243 2 1
Burkholderia_ambifaria_MC40-6 2 1
Burkholderia_cenocepacia_MC0-3 5 2
Burkholderia_cenocepacia_AU_1054 5 2
Burkholderia_cepacia_GG4 2 1
Leisingera_methylohalidivorans_DSM_14336 1 1
Xanthomonas_citri_subsp._citri_Aw12879 2 1
Xanthomonas_axonopodis_Xac29-1 2 1
Pseudomonas_putida_W619 1 1
Pseudomonas_protegens_CHA0 2 1
Pseudomonas_fluorescens_F113 1 1
Pseudomonas_fluorescens_A506 1 1

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Longest transcript per gene
Genome     Number   Proteins
Gadus_morhua_69_1   (Atlantic cod)   2 2
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   1 1
Takifugu_rubripes_69_4   (Torafugu)   2 2
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   3 3
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   2 2
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1 1
Arabidopsis_thaliana_10   (Thale cress)   50 47

Others
Genome     Number   Proteins
Lotus_japonicus__(Early_assembly) 58 56
Malus_x_domestica_(Duplicate)   (Apple)   326 293
Ricinus_communis__(Early_assembly)   (Castor bean)   95 81
Nicotiana_benthamiana_0.4.4_(Early_draft) 117 100
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   101 93
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   102 94
Phoenix_dactylifera__(Early_draft)   (Date palm)   21 20
NCBI_plasmid_sequences_(Plasmids) 9 7
Protein_Data_Bank_(all_PDB_sequenc) 142 120
NCBI_viral_sequences_(Viral) 5 5
PDB_chains_(SCOP_1.75)_(PDB) 13 12
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 308 302
STRING_v9.0.5_(STRING) 1137 1051
Uniprot_2018_03_genome 16394 14728
UniProt__viral_sequences_(Viral) 1 1
TargetDB__(Targets) 2 1
NCBI_2017_08_genome 16960 14433

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