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Domain combinations for beta-Roll superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a beta-Roll domain in that genome.

Complete genomes
Genome     Number   Proteins
Canis_familiaris_76_3.1   (Dog)   1 1
Saccoglossus_kowalevskii_v3.0 27 21
Oryzias_latipes_76_1   (Japanese medaka)   1 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1 1
Octopus_bimaculoides_280 1 1
Crassostrea_gigas_22   (Pacific oyster)   5 2
Lottia_gigantea_   (Owl limpet)   1 1
Capitella_sp._I_ 35 14
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2 1
Daphnia_pulex_   (Common water flea)   1 1
Caenorhabditis_japonica_ 1 1
Mnemiopsis_leidyi   (Sea walnut)   2 2
Acropora_digitifera_v1.0 9 3
Nematostella_vectensis_1.0   (Starlet sea anemone)   12 12
Hydra_vulgaris 2 1
Hebeloma_cylindrosporum_h7_v2.0 1 1
Botrytis_cinerea_B05.10_ 1 1
Dictyostelium_discoideum 1 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2 2
Fragaria_vesca_   (Wild strawberry)   1 1
Malus_domestica_v196   (Apple)   1 1
Triticum_urartu_22 1 1
Triticum_aestivum_22   (Bread wheat)   5 5
Aegilops_tauschii_22 1 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   1 1
Oryza_sativa_v193   (Rice)   1 1
Volvox_carteri_f._nagariensis_ 1 1
Aureococcus_anophagefferens_ 10 4
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Thalassiosira_pseudonana_CCMP1335 5 3
Plasmodium_falciparum_3D7_ 2 2
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 1 1
Thermobaculum_terrenum_ATCC_BAA-798 3 3
Leptolyngbya_sp._PCC_7376 10 6
Pseudanabaena_sp._PCC_7367 46 29
Acaryochloris_marina_MBIC11017 103 31
Synechocystis_sp._PCC_6803 15 8
Synechococcus_sp._PCC_7502 14 6
Synechococcus_sp._PCC_6312 20 6
Synechococcus_sp._CC9311 4 4
Synechococcus_elongatus_PCC_7942 7 5
Microcoleus_sp._PCC_7113 18 6
Trichodesmium_erythraeum_IMS101 77 37
Geitlerinema_sp._PCC_7407 24 6
Cyanothece_sp._PCC_8802 9 6
Gloeocapsa_sp._PCC_7428 59 26
Halothece_sp._PCC_7418 21 14
Microcystis_aeruginosa_NIES-843 46 25
Gloeobacter_violaceus_PCC_7421 3 2
Rivularia_sp._PCC_7116 94 41
Calothrix_sp._PCC_7507 12 8
Anabaena_variabilis_ATCC_29413 64 14
'Nostoc_azollae'_0708 3 1
Nostoc_sp._PCC_7107 35 9
Nostoc_punctiforme_PCC_73102 86 25
Nostoc_sp._PCC_7120 53 18
Nostoc_sp._PCC_7524 60 27
Anabaena_sp._90 21 13
Conexibacter_woesei_DSM_14684 11 6
Rubrobacter_xylanophilus_DSM_9941 4 3
Modestobacter_marinus 1 1
Blastococcus_saxobsidens_DD2 2 1
Geodermatophilus_obscurus_DSM_43160 2 1
Kineococcus_radiotolerans_SRS30216 1 1
Stackebrandtia_nassauensis_DSM_44728 25 13
Streptosporangium_roseum_DSM_43021 2 2
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_bingchenggensis_BCW-1 2 1
Streptomyces_violaceusniger_Tu_4113 2 2
Streptomyces_scabiei_87.22 4 3
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 1 1
Kribbella_flavida_DSM_17836 7 1
Microlunatus_phosphovorus_NM-1 6 4
Salinispora_arenicola_CNS-205 2 1
Micromonospora_sp._L5 1 1
Micromonospora_aurantiaca_ATCC_27029 1 1
Actinoplanes_sp._N902-109 2 1
Actinoplanes_sp._SE50/110 3 1
Actinoplanes_missouriensis_431 25 10
Segniliparus_rotundus_DSM_44985 1 1
Intrasporangium_calvum_DSM_43043 7 1
Isoptericola_variabilis_225 7 1
[Cellvibrio]_gilvus_ATCC_13127 5 3
Arthrobacter_chlorophenolicus_A6 1 1
Arthrobacter_sp._FB24 2 1
Anaerolinea_thermophila_UNI-1 2 2
Ruminococcus_albus_7 3 1
Filifactor_alocis_ATCC_35896 8 1
Clostridium_cellulovorans_743B 76 12
Thermodesulfobium_narugense_DSM_14796 4 2
Streptococcus_sanguinis_SK36 4 1
Paenibacillus_mucilaginosus_3016 22 10
Pelodictyon_phaeoclathratiforme_BU-1 5 3
Chlorobium_luteolum_DSM_273 8 2
Chlorobium_chlorochromatii_CaD3 11 10
Chlorobium_phaeobacteroides_DSM_266 40 5
Chlorobium_phaeovibrioides_DSM_265 12 2
Chlorobium_limicola_DSM_245 70 9
Prosthecochloris_aestuarii_DSM_271 1 1
Isosphaera_pallida_ATCC_43644 35 6
Planctomyces_brasiliensis_DSM_5305 1 1
Rhodopirellula_baltica_SH_1 5 1
Pirellula_staleyi_DSM_6068 16 9
Coraliomargarita_akajimensis_DSM_45221 5 1
Opitutus_terrae_PB90-1 1 1
Desulfurispirillum_indicum_S5 1 1
Denitrovibrio_acetiphilus_DSM_12809 1 1
Aquifex_aeolicus_VF5 1 1
Candidatus_Chloracidobacterium_thermophilum_B 1 1
Candidatus_Nitrospira_defluvii 12 1
Sulfurospirillum_deleyianum_DSM_6946 24 8
Arcobacter_nitrofigilis_DSM_7299 15 4
Arcobacter_butzleri_RM4018 1 1
Campylobacter_hominis_ATCC_BAA-381 21 12
Campylobacter_curvus_525.92 1 1
Campylobacter_concisus_13826 1 1
Campylobacter_sp._03-427 1 1
Campylobacter_fetus_subsp._fetus_82-40 2 1
uncultured_Sulfuricurvum_sp._RIFRC-1 16 6
Sulfuricurvum_kujiense_DSM_16994 14 4
Sulfurimonas_denitrificans_DSM_1251 9 4
Nitratiruptor_sp._SB155-2 3 2
Sulfurovum_sp._NBC37-1 1 1
Desulfomonile_tiedjei_DSM_6799 41 3
Desulfotalea_psychrophila_LSv54 1 1
Desulfococcus_oleovorans_Hxd3 10 1
Desulfomicrobium_baculatum_DSM_4028 63 6
Desulfovibrio_piezophilus 2 2
Desulfovibrio_aespoeensis_Aspo-2 15 4
Desulfovibrio_alaskensis_G20 7 2
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1 1
Desulfovibrio_salexigens_DSM_2638 16 5
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 1 1
Desulfovibrio_africanus_str._Walvis_Bay 3 1
Geobacter_daltonii_FRC-32 12 1
Geobacter_uraniireducens_Rf4 12 1
Pelobacter_propionicus_DSM_2379 18 2
Haliangium_ochraceum_DSM_14365 1 1
Corallococcus_coralloides_DSM_2259 2 2
Dechloromonas_aromatica_RCB 2 1
Azoarcus_sp._KH32C 51 10
Aromatoleum_aromaticum_EbN1 1 1
Dechlorosoma_suillum_PS 15 1
Pseudogulbenkiania_sp._NH8B 1 1
Laribacter_hongkongensis_HLHK9 2 2
Chromobacterium_violaceum_ATCC_12472 14 2
Neisseria_meningitidis_alpha14 12 2
Neisseria_meningitidis_FAM18 7 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 101 9
beta_proteobacterium_CB 3 3
Methylibium_petroleiphilum_PM1 1 1
Rubrivivax_gelatinosus_IL144 1 1
Leptothrix_cholodnii_SP-6 14 3
Ralstonia_eutropha_JMP134 4 1
Cupriavidus_taiwanensis_LMG_19424 5 2
Cupriavidus_necator_N-1 4 1
Ralstonia_eutropha_H16 3 1
Ralstonia_solanacearum_CFBP2957 13 4
Burkholderia_sp._CCGE1002 1 1
Burkholderia_ambifaria_AMMD 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Verminephrobacter_eiseniae_EF01-2 5 2
Ramlibacter_tataouinensis_TTB310 22 1
Delftia_sp._Cs1-4 1 1
Polaromonas_sp._JS666 16 3
Variovorax_paradoxus_S110 3 1
Rhodoferax_ferrireducens_T118 20 4
Acidovorax_sp._KKS102 3 3
Acidovorax_sp._JS42 2 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 18 3
Comamonas_testosteroni_CNB-2 1 1
Herminiimonas_arsenicoxydans 9 1
Collimonas_fungivorans_Ter331 10 1
Janthinobacterium_sp._Marseille 6 1
Herbaspirillum_seropedicae_SmR1 16 5
Taylorella_equigenitalis_MCE9 1 1
Bordetella_avium_197N 2 1
Bordetella_pertussis_Tohama_I 5 1
Bordetella_parapertussis_12822 6 2
Bordetella_bronchiseptica_RB50 6 2
Achromobacter_xylosoxidans_A8 5 4
Achromobacter_xylosoxidans 19 3
Nitrosomonas_sp._Is79A3 24 11
Nitrosomonas_europaea_ATCC_19718 1 1
Sideroxydans_lithotrophicus_ES-1 15 2
Gallionella_capsiferriformans_ES-2 10 2
Methylotenera_versatilis_301 27 4
Methylotenera_mobilis_JLW8 13 2
Methylovorus_sp._MP688 1 1
Methylovorus_glucosetrophus_SIP3-4 44 7
Methylobacillus_flagellatus_KT 9 2
Magnetococcus_marinus_MC-1 13 8
Parvularcula_bermudensis_HTCC2503 13 8
Brevundimonas_subvibrioides_ATCC_15264 18 3
Caulobacter_sp._K31 27 13
Caulobacter_crescentus_NA1000 8 4
Caulobacter_segnis_ATCC_21756 13 7
Phenylobacterium_zucineum_HLK1 58 24
Novosphingobium_sp._PP1Y 4 2
Novosphingobium_aromaticivorans_DSM_12444 3 3
Sphingobium_japonicum_UT26S 36 5
Sphingobium_chlorophenolicum_L-1 6 2
Sphingomonas_wittichii_RW1 11 5
Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 1 1
Maricaulis_maris_MCS10 8 3
Dinoroseobacter_shibae_DFL_12 26 11
Phaeobacter_gallaeciensis_2.10 52 20
Pseudovibrio_sp._FO-BEG1 52 17
Jannaschia_sp._CCS1 17 10
Ruegeria_sp._TM1040 26 14
Ruegeria_pomeroyi_DSS-3 52 15
Ketogulonicigenium_vulgare_Y25 7 2
Ketogulonigenium_vulgarum_WSH-001 7 2
Roseobacter_litoralis_Och_149 41 13
Roseobacter_denitrificans_OCh_114 50 15
Rhodobacter_sphaeroides_ATCC_17029 19 8
Rhodobacter_capsulatus_SB_1003 58 16
Paracoccus_denitrificans_PD1222 33 11
Rhodospirillum_photometricum_DSM_122 12 2
Tistrella_mobilis_KA081020-065 57 12
Magnetospirillum_magneticum_AMB-1 22 7
Rhodospirillum_centenum_SW 14 9
Azospirillum_lipoferum_4B 59 11
Azospirillum_sp._B510 62 10
Azospirillum_brasilense_Sp245 95 39
Gluconacetobacter_xylinus_NBRC_3288 1 1
Granulibacter_bethesdensis_CGDNIH1 24 14
Gluconacetobacter_diazotrophicus_PAl_5 2 1
Acidiphilium_multivorum_AIU301 6 3
Acidiphilium_cryptum_JF-5 2 1
Gluconobacter_oxydans_621H 2 1
Acetobacter_pasteurianus_IFO_3283-01 2 1
Polymorphum_gilvum_SL003B-26A1 1 1
Micavibrio_aeruginosavorus_ARL-13 24 6
Candidatus_Puniceispirillum_marinum_IMCC1322 4 3
Starkeya_novella_DSM_506 7 1
Xanthobacter_autotrophicus_Py2 1 1
Azorhizobium_caulinodans_ORS_571 6 3
Methylobacterium_chloromethanicum_CM4 30 12
Methylobacterium_extorquens_AM1 43 11
Methylobacterium_sp._4-46 23 11
Methylobacterium_populi_BJ001 34 9
Methylobacterium_nodulans_ORS_2060 35 17
Methylobacterium_radiotolerans_JCM_2831 7 1
Ochrobactrum_anthropi_ATCC_49188 5 2
Sinorhizobium_fredii_NGR234 43 14
Sinorhizobium_medicae_WSM419 43 14
Sinorhizobium_meliloti_AK83 39 15
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 2 2
Rhizobium_etli_CIAT_652 33 6
Rhizobium_leguminosarum_bv._viciae_3841 20 6
Agrobacterium_tumefaciens_str._C58 6 4
Agrobacterium_radiobacter_K84 2 2
Agrobacterium_sp._H13-3 3 3
Agrobacterium_vitis_S4 27 6
Candidatus_Liberibacter_asiaticus_str._psy62 1 1
Mesorhizobium_sp._BNC1 16 3
Mesorhizobium_opportunistum_WSM2075 6 2
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 5 4
Mesorhizobium_loti_MAFF303099 10 3
Methylocella_silvestris_BL2 5 1
Beijerinckia_indica_subsp._indica_ATCC_9039 10 1
Pelagibacterium_halotolerans_B2 15 3
Oligotropha_carboxidovorans_OM4 5 2
Rhodopseudomonas_palustris_BisA53 7 3
Nitrobacter_winogradskyi_Nb-255 2 1
Nitrobacter_hamburgensis_X14 3 2
Bradyrhizobium_japonicum_USDA_110 24 9
Bradyrhizobium_sp._ORS_278 7 4
Saccharophagus_degradans_2-40 1 1
Cellvibrio_japonicus_Ueda107 1 1
Aggregatibacter_actinomycetemcomitans_D7S-1 2 1
Gallibacterium_anatis_UMN179 9 4
Actinobacillus_pleuropneumoniae_serovar_5b_str._L20 10 3
Oceanimonas_sp._GK1 1 1
Tolumonas_auensis_DSM_9187 3 2
Aeromonas_veronii_B565 4 3
Aeromonas_salmonicida_subsp._salmonicida_A449 4 2
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 7 4
Aliivibrio_salmonicida_LFI1238 1 1
Vibrio_fischeri_MJ11 2 2
Vibrio_sp._Ex25 7 6
Vibrio_harveyi_ATCC_BAA-1116 15 6
Vibrio_parahaemolyticus_RIMD_2210633 6 6
Vibrio_splendidus_LGP32 2 2
Vibrio_anguillarum_775 3 3
Vibrio_furnissii_NCTC_11218 1 1
Vibrio_vulnificus_MO6-24/O 5 4
Vibrio_cholerae_O395 4 3
Photobacterium_profundum_SS9 3 2
Psychromonas_ingrahamii_37 2 1
Psychromonas_sp._CNPT3 2 1
Shewanella_piezotolerans_WP3 16 4
Shewanella_loihica_PV-4 2 2
Shewanella_halifaxensis_HAW-EB4 3 2
Shewanella_sediminis_HAW-EB3 4 4
Shewanella_denitrificans_OS217 1 1
Shewanella_pealeana_ATCC_700345 3 2
Shewanella_oneidensis_MR-1 1 1
Shewanella_baltica_OS185 2 1
Shewanella_woodyi_ATCC_51908 5 4
Shewanella_sp._MR-4 1 1
Shewanella_amazonensis_SB2B 1 1
Shewanella_violacea_DSS12 10 3
Shewanella_frigidimarina_NCIMB_400 1 1
Shewanella_putrefaciens_CN-32 1 1
Colwellia_psychrerythraea_34H 1 1
Marinobacter_sp._BSs20148 2 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1 1
Hahella_chejuensis_KCTC_2396 41 6
Marinomonas_posidonica_IVIA-Po-181 1 1
Marinomonas_sp._MWYL1 3 1
Marinomonas_mediterranea_MMB-1 1 1
Chromohalobacter_salexigens_DSM_3043 2 1
Methylomicrobium_alcaliphilum 2 1
Dichelobacter_nodosus_VCS1703A 3 2
Xylella_fastidiosa_M23 24 4
Xanthomonas_axonopodis_pv._citri_str._306 14 3
Spiribacter_sp._UAH-SP71 1 1
Thioalkalivibrio_sp._K90mix 2 2
Allochromatium_vinosum_DSM_180 12 4
Thiocystis_violascens_DSM_198 1 1
Nitrosococcus_watsonii_C-113 1 1
Nitrosococcus_oceani_ATCC_19707 1 1
Legionella_pneumophila_str._Corby 3 1
gamma_proteobacterium_HdN1 13 1
Candidatus_Ruthia_magnifica_str._Cm_(Calyptogena_magnifica) 1 1
Photorhabdus_asymbiotica 8 5
Photorhabdus_luminescens_subsp._laumondii_TTO1 14 7
Xenorhabdus_bovienii_SS-2004 2 2
Xenorhabdus_nematophila_ATCC_19061 6 3
Proteus_mirabilis_HI4320 12 7
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1 1
Yersinia_pseudotuberculosis_IP_31758 3 2
Yersinia_pestis_Pestoides_F 3 2
Yersinia_enterocolitica_subsp._enterocolitica_8081 7 4
Serratia_sp._AS12 4 3
Serratia_sp._ATCC_39006 1 1
Serratia_plymuthica_AS9 4 3
Serratia_proteamaculans_568 4 3
Dickeya_zeae_Ech1591 4 4
Pectobacterium_wasabiae_WPP163 2 2
Pectobacterium_sp._SCC3193 2 2
Pectobacterium_atrosepticum_SCRI1043 2 2
Pectobacterium_carotovorum_subsp._carotovorum_PC1 3 3
Pantoea_sp._At-9b 1 1
Pantoea_vagans_C9-1 1 1
Erwinia_sp._Ejp617 1 1
Erwinia_pyrifoliae_Ep1/96 1 1
Erwinia_amylovora_ATCC_49946 1 1
Escherichia_blattae_DSM_4481 7 2
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 27 17
Enterobacteriaceae_bacterium_strain_FGI_57 3 2
Shigella_dysenteriae_Sd197 1 1
Escherichia_fergusonii_ATCC_35469 1 1
Enterobacter_asburiae_LF7a 1 1
Enterobacter_cloacae_subsp._dissolvens_SDM 3 3
Azotobacter_vinelandii_DJ 47 16
Pseudomonas_sp._TKP 4 4
Pseudomonas_sp._UW4 28 6
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 16 7
Pseudomonas_entomophila_L48 6 4
Pseudomonas_syringae_pv._tomato_str._DC3000 9 3
Pseudomonas_fulva_12-X 9 3
Pseudomonas_putida_F1 10 3
Pseudomonas_protegens_Pf-5 8 5
Pseudomonas_fluorescens_SBW25 6 6
Pseudomonas_mendocina_ymp 19 5
Pseudomonas_aeruginosa_UCBPP-PA14 2 2
Pseudomonas_sp._VLB120 4 3
Psychrobacter_sp._PRwf-1 7 5
Acinetobacter_oleivorans_DR1 4 2
Acinetobacter_calcoaceticus_PHEA-2 2 1
Acinetobacter_baumannii_ATCC_17978 24 4
Methylophaga_sp._JAM1 23 3
Cycloclasticus_sp._P1 1 1
Thiomicrospira_crunogena_XCL-2 1 1
Francisella_cf._novicida_3523 4 1
Cenarchaeum_symbiosum_A 1 1
Candidatus_Nitrosopumilus_sp._AR2 1 1
Nitrosopumilus_maritimus_SCM1 1 1

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Strains
Genome     Number   Proteins
Hordeum_vulgare_22   (Domesticated barley)   6 6
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   2 2
Plasmodium_falciparum_HB3_ 2 2
Plasmodium_falciparum_Dd2_ 1 1
Chroococcidiopsis_thermalis_PCC_7203 14 9
Chamaesiphon_minutus_PCC_6605 42 13
Synechocystis_sp._PCC_6803_substr._PCC-P 14 7
Synechocystis_sp._PCC_6803_substr._PCC-N 14 7
Synechocystis_sp._PCC_6803_substr._GT-I 14 7
Synechocystis_sp._PCC_6803 15 8
Cyanobium_gracile_PCC_6307 9 9
Dactylococcopsis_salina_PCC_8305 41 24
Synechococcus_sp._CC9902 9 5
Synechococcus_sp._RCC307 23 7
Synechococcus_sp._CC9605 1 1
Synechococcus_sp._WH_8102 16 13
Synechococcus_sp._WH_7803 10 4
Synechococcus_sp._PCC_7002 1 1
Synechococcus_elongatus_PCC_6301 7 5
Prochlorococcus_marinus_str._NATL1A 6 4
Prochlorococcus_marinus_str._AS9601 6 1
Prochlorococcus_marinus_str._MIT_9313 6 6
Prochlorococcus_marinus_str._MIT_9303 24 23
Prochlorococcus_marinus_str._NATL2A 5 5
Oscillatoria_nigro-viridis_PCC_7112 135 61
Oscillatoria_acuminata_PCC_6304 71 36
Arthrospira_platensis_NIES-39 65 34
Cyanothece_sp._PCC_7822 101 27
Cyanothece_sp._PCC_7425 1 1
Cyanothece_sp._PCC_7424 26 8
Cyanothece_sp._ATCC_51142 28 20
Cyanothece_sp._PCC_8801 10 6
Cyanobacterium_aponinum_PCC_10605 6 6
Cyanobacterium_stanieri_PCC_7202 1 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 3 2
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 13 7
Stanieria_cyanosphaera_PCC_7437 28 14
Calothrix_parietina_Calothrix_sp._PCC_6303 31 12
Cylindrospermum_stagnale_PCC_7417 22 6
Anabaena_cylindrica_PCC_7122 78 29
Frankia_sp._EuI1c 1 1
Streptomyces_rapamycinicus_NRRL_5491 4 3
Streptomyces_davawensis_JCM_4913 1 1
Streptomyces_fulvissimus_DSM_40593 1 1
Streptomyces_venezuelae_ATCC_10712 2 2
Streptomyces_collinus_Tu_365 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 1 1
Saccharothrix_espanaensis_DSM_44229 4 3
Amycolatopsis_orientalis_HCCB10007 9 1
Actinoplanes_friuliensis_DSM_7358 7 3
Nocardia_brasiliensis_ATCC_700358 1 1
Ruminococcus_champanellensis_18P13 4 1
Paenibacillus_mucilaginosus_KNP414 20 9
Paenibacillus_mucilaginosus_K02 18 8
Chlorobium_phaeobacteroides_BS1 6 2
Singulisphaera_acidiphila_DSM_18658 10 1
Arcobacter_butzleri_7h1h 5 2
Arcobacter_butzleri_ED-1 1 1
Desulfocapsa_sulfexigens_DSM_10523 12 2
Desulfobacula_toluolica_Tol2 18 2
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 22 6
Desulfovibrio_vulgaris_RCH1 2 2
Desulfovibrio_vulgaris_str._'Miyazaki_F' 4 3
Desulfovibrio_vulgaris_str._Hildenborough 2 2
Desulfovibrio_desulfuricans_ND132 2 1
Geobacter_sp._M18 1 1
Myxococcus_stipitatus_DSM_14675 3 2
Neisseria_meningitidis_G2136 13 2
Neisseria_meningitidis_M04-240196 6 2
Neisseria_meningitidis_M01-240149 4 2
Neisseria_meningitidis_M01-240355 5 2
Neisseria_meningitidis_8013 5 2
Neisseria_meningitidis_053442 10 2
Neisseria_meningitidis_Z2491 2 1
Neisseria_meningitidis_H44/76 7 2
Neisseria_meningitidis_alpha710 7 2
Neisseria_meningitidis_MC58 8 2
Ralstonia_solanacearum_FQY_4 21 5
Ralstonia_solanacearum_Po82 25 5
Ralstonia_solanacearum_PSI07 15 4
Ralstonia_solanacearum_CMR15 23 7
Ralstonia_solanacearum_GMI1000 28 7
Burkholderia_ambifaria_MC40-6 15 3
Burkholderia_cenocepacia_MC0-3 6 1
Burkholderia_cenocepacia_J2315 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 3 2
Alicycliphilus_denitrificans_BC 3 1
Variovorax_paradoxus_B4 1 1
Bordetella_pertussis_CS 5 1
Bordetella_parapertussis_18323 5 1
Bordetella_parapertussis_Bpp5 6 2
Bordetella_bronchiseptica_MO149 6 2
Bordetella_bronchiseptica_253 1 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1 1
Nitrosomonas_sp._AL212 56 26
Caulobacter_crescentus_CB15 8 4
Zymomonas_mobilis_subsp._mobilis_CP4 1 1
Zymomonas_mobilis_subsp._mobilis_ATCC_10988 1 1
Zymomonas_mobilis_subsp._mobilis_ZM4 1 1
Zymomonas_mobilis_subsp._pomaceae_ATCC_29192 1 1
Phaeobacter_gallaeciensis_DSM_17395 48 19
Phaeobacter_gallaeciensis_DSM_26640 39 17
Leisingera_methylohalidivorans_DSM_14336 25 12
Octadecabacter_antarcticus_307 39 14
Octadecabacter_arcticus_238 21 10
Rhodobacter_sphaeroides_KD131 25 10
Rhodobacter_sphaeroides_ATCC_17025 10 6
Rhodobacter_sphaeroides_2.4.1 35 10
Paracoccus_aminophilus_JCM_7686 32 13
Magnetospirillum_gryphiswaldense_MSR-1_v2 20 6
Rhodospirillum_rubrum_ATCC_11170 2 2
Gluconacetobacter_diazotrophicus_PAl_5 2 1
Gluconobacter_oxydans_H24 1 1
Acetobacter_pasteurianus_386B 2 1
Acetobacter_pasteurianus_IFO_3283-12 2 1
Acetobacter_pasteurianus_IFO_3283-01-42C 2 1
Acetobacter_pasteurianus_IFO_3283-32 2 1
Acetobacter_pasteurianus_IFO_3283-26 2 1
Acetobacter_pasteurianus_IFO_3283-22 2 1
Acetobacter_pasteurianus_IFO_3283-07 2 1
Acetobacter_pasteurianus_IFO_3283-03 2 1
Micavibrio_aeruginosavorus_EPB 27 6
Methylobacterium_extorquens_DM4 25 12
Methylobacterium_extorquens_PA1 58 15
Sinorhizobium_fredii_USDA_257 34 13
Sinorhizobium_fredii_HH103 50 13
Sinorhizobium_meliloti_2011 36 14
Sinorhizobium_meliloti_GR4 44 17
Sinorhizobium_meliloti_Rm41 41 16
Sinorhizobium_meliloti_SM11 43 17
Sinorhizobium_meliloti_BL225C 43 17
Sinorhizobium_meliloti_1021 43 18
Rhizobium_etli_CFN_42 17 2
Rhizobium_etli_bv._mimosae_str._Mim1 20 6
Rhizobium_tropici_CIAT_899 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 17 4
Rhizobium_leguminosarum_bv._trifolii_WSM1325 10 5
Liberibacter_crescens_BT-1 4 4
Candidatus_Liberibacter_solanacearum_CLso-ZC1 1 1
Candidatus_Liberibacter_asiaticus_str._gxpsy 1 1
Mesorhizobium_australicum_WSM2073 3 3
Hyphomicrobium_nitrativorans_NL23 1 1
Hyphomicrobium_denitrificans_1NES1 3 1
Oligotropha_carboxidovorans_OM5 6 3
Oligotropha_carboxidovorans_OM5 6 3
Rhodopseudomonas_palustris_DX-1 22 4
Rhodopseudomonas_palustris_TIE-1 10 2
Rhodopseudomonas_palustris_HaA2 20 5
Rhodopseudomonas_palustris_BisB5 9 2
Rhodopseudomonas_palustris_BisB18 1 1
Bradyrhizobium_sp._S23321 3 3
Bradyrhizobium_sp._BTAi1 2 2
Bradyrhizobium_oligotrophicum_S58 124 9
Bradyrhizobium_japonicum_USDA_6 25 8
Simiduia_agarivorans_SA1_=_DSM_21679 9 2
Bibersteinia_trehalosi_USDA-ARS-USMARC-192 4 3
Aggregatibacter_actinomycetemcomitans_ANH9381 2 1
Aggregatibacter_actinomycetemcomitans_D11S-1 2 1
Haemophilus_somnus_2336 1 1
Mannheimia_haemolytica_USMARC_2286 1 1
Mannheimia_haemolytica_M42548 1 1
Mannheimia_haemolytica_D174 1 1
Mannheimia_haemolytica_D171 1 1
Mannheimia_haemolytica_D153 1 1
Mannheimia_haemolytica_USDA-ARS-USMARC-183 1 1
Mannheimia_haemolytica_USDA-ARS-USMARC-185 6 2
Haemophilus_parasuis_ZJ0906 2 1
Actinobacillus_suis_H91-0380 10 6
Actinobacillus_pleuropneumoniae_serovar_3_str._JL03 2 2
Actinobacillus_pleuropneumoniae_serovar_7_str._AP76 11 4
Aeromonas_hydrophila_ML09-119 6 4
Vibrio_fischeri_ES114 2 2
Vibrio_sp._EJY3 4 2
Vibrio_parahaemolyticus_BB22OP 5 5
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 5 5
Vibrio_anguillarum_Listonella_anguillarum_M3 3 3
Vibrio_nigripulchritudo_VibrioScope 4 3
Vibrio_vulnificus_CMCP6 5 4
Vibrio_vulnificus_YJ016 5 4
Vibrio_cholerae_LMA3984-4 2 2
Vibrio_cholerae_M66-2 4 3
Vibrio_cholerae_O395 4 3
Vibrio_cholerae_IEC224 3 2
Vibrio_cholerae_O1_str._2010EL-1786 4 3
Vibrio_cholerae_MJ-1236 4 3
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 2 2
Shewanella_sp._W3-18-1 1 1
Shewanella_sp._ANA-3 2 1
Shewanella_baltica_BA175 2 1
Shewanella_baltica_OS678 2 1
Shewanella_baltica_OS117 2 1
Shewanella_baltica_OS223 2 1
Shewanella_baltica_OS195 2 1
Shewanella_baltica_OS155 2 1
Shewanella_sp._MR-7 1 1
Shewanella_putrefaciens_200 1 1
Xylella_fastidiosa_subsp._fastidiosa_GB514 17 4
Xylella_fastidiosa_M12 11 3
Xylella_fastidiosa_Temecula1 17 4
Xylella_fastidiosa_9a5c 18 4
Xanthomonas_citri_subsp._citri_Aw12879 11 1
Xanthomonas_axonopodis_pv._citrumelo_F1 12 1
Xanthomonas_axonopodis_Xac29-1 15 3
Xanthomonas_campestris_pv._raphani_756C 1 1
Spiribacter_salinus_M19-40 4 1
Legionella_pneumophila_str._Paris 2 1
Legionella_pneumophila_str._Lens 2 1
Legionella_pneumophila_subsp._pneumophila_LPE509 3 1
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 3 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 2 1
Legionella_pneumophila_subsp._pneumophila 3 1
Legionella_pneumophila_subsp._pneumophila 2 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 3 1
Legionella_pneumophila_2300/99_Alcoy 3 1
Proteus_mirabilis_BB2000 13 8
Morganella_morganii_subsp._morganii_KT 1 1
Yersinia_pseudotuberculosis_PB1/+ 3 2
Yersinia_pseudotuberculosis_YPIII 3 2
Yersinia_pseudotuberculosis_IP_32953 3 2
Yersinia_pestis_biovar_Microtus_str._91001 3 2
Yersinia_pestis_A1122 3 2
Yersinia_pestis_Z176003 3 2
Yersinia_pestis_D182038 3 2
Yersinia_pestis_D106004 3 2
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 3 2
Yersinia_pestis_Nepal516 3 2
Yersinia_pestis_Antiqua 3 2
Yersinia_pestis_Angola 3 2
Yersinia_pestis_CO92 3 2
Yersinia_pestis_KIM10+ 3 2
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 10 6
Yersinia_enterocolitica_subsp._palearctica_Y11 10 8
Serratia_sp._AS13 4 3
Serratia_plymuthica_S13 4 3
Serratia_plymuthica_4Rx13 4 3
Serratia_marcescens_FGI94 12 8
Serratia_marcescens_WW4 7 6
Serratia_liquefaciens_ATCC_27592 6 5
Dickeya_dadantii_Ech586 4 4
Dickeya_dadantii_3937 4 4
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 2 2
Erwinia_amylovora_CFBP1430 1 1
Shigella_dysenteriae_1617 1 1
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1 1
Escherichia_coli_O7:K1_str._CE10 1 1
Escherichia_coli_UM146 1 1
Escherichia_coli_Xuzhou21 2 2
Escherichia_coli_UMNK88 2 1
Escherichia_coli_ABU_83972 1 1
Escherichia_coli_UMN026 1 1
Escherichia_coli_O103:H2_str._12009 1 1
Escherichia_coli_UTI89 1 1
Escherichia_coli_536 3 2
Escherichia_coli_O55:H7_str._RM12579 1 1
Escherichia_coli_O55:H7_str._CB9615 1 1
Escherichia_coli_O26:H11_str._11368 1 1
Escherichia_coli_CFT073 1 1
Escherichia_coli_O111:H-_str._11128 1 1
Escherichia_coli_O157:H7_str._TW14359 1 1
Escherichia_coli_O157:H7_str._EC4115 1 1
Escherichia_coli_O157:H7_str._Sakai 2 2
Escherichia_coli_O157:H7_str._EDL933 2 2
Enterobacter_cloacae_EcWSU1 1 1
Enterobacter_cloacae_subsp._cloacae_ENHKU01 1 1
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 2 2
Azotobacter_vinelandii_CA6 47 16
Azotobacter_vinelandii_CA 47 16
Pseudomonas_denitrificans_ATCC_13867 19 4
Pseudomonas_syringae_pv._phaseolicola_1448A 42 6
Pseudomonas_syringae_pv._syringae_B728a 35 9
Pseudomonas_stutzeri_RCH2 2 1
Pseudomonas_monteilii_SB3101 8 3
Pseudomonas_monteilii_SB3078 8 3
Pseudomonas_putida_H8234 5 3
Pseudomonas_putida_HB3267 10 3
Pseudomonas_putida_NBRC_14164 3 3
Pseudomonas_putida_DOT-T1E 14 6
Pseudomonas_putida_S16 7 4
Pseudomonas_putida_BIRD-1 2 2
Pseudomonas_putida_W619 4 4
Pseudomonas_putida_ND6 11 4
Pseudomonas_putida_KT2440 16 6
Pseudomonas_putida_GB-1 10 3
Pseudomonas_protegens_CHA0 7 5
Pseudomonas_poae_RE*1-1-14 6 6
Pseudomonas_fluorescens_F113 21 7
Pseudomonas_fluorescens_A506 17 13
Pseudomonas_fluorescens_R124 21 8
Pseudomonas_fluorescens_Pf0-1 33 10
Pseudomonas_resinovorans_NBRC_106553 55 11
Pseudomonas_mendocina_NK-01 2 2
Pseudomonas_aeruginosa_SCV20265 2 2
Pseudomonas_aeruginosa_MTB-1 2 2
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_B136-33 1 1
Pseudomonas_aeruginosa_PA1R 2 2
Pseudomonas_aeruginosa_PA1 2 2
Pseudomonas_aeruginosa_DK2 2 2
Pseudomonas_aeruginosa_NCGM2.S1 2 2
Pseudomonas_aeruginosa_M18 2 2
Pseudomonas_aeruginosa_LESB58 2 2
Pseudomonas_aeruginosa_PA7 2 2
Pseudomonas_aeruginosa_PAO1 2 2
Acinetobacter_genomosp._13TU__RUH2624 1 1
Acinetobacter_sp.__SH024 1 1
Acinetobacter_baumannii_ZW85-1 6 1
Acinetobacter_baumannii_TYTH-1 3 2
Acinetobacter_baumannii_BJAB0868 5 2
Acinetobacter_baumannii_BJAB0715 4 2
Acinetobacter_baumannii_BJAB07104 3 2
Acinetobacter_baumannii_TCDC-AB0715 1 1
Acinetobacter_baumannii_D1279779 8 2
Acinetobacter_baumannii_MDR-TJ 3 2
Acinetobacter_baumannii_1656-2 3 2
Acinetobacter_baumannii__ATCC_19606 15 2
Acinetobacter_baumannii_AB307-0294 1 1
Acinetobacter_baumannii_AYE 1 1
Acinetobacter_baumannii_MDR-ZJ06 3 2
Acinetobacter_baumannii_AB0057 1 1
Acinetobacter_baumannii_ACICU 3 2
Acinetobacter_radioresistens__SH164 1 1
Acinetobacter_johnsonii__SH046 1 1
Methylophaga_sp._JAM7 14 3
Francisella_cf._novicida_Fx1 7 2
Candidatus_Nitrososphaera_gargensis_Ga9.2 10 8

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Longest transcript per gene
Genome     Number   Proteins
Canis_familiaris_69_3.1   (Dog)   1 1
Oryzias_latipes_69_1   (Japanese medaka)   1 1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1 1

Others
Genome     Number   Proteins
Loa_loa_v3.3_(Request)   (Eye worm)   1 1
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2 2
Lotus_japonicus__(Early_assembly) 2 2
Malus_x_domestica_(Duplicate)   (Apple)   1 1
Ricinus_communis__(Early_assembly)   (Castor bean)   4 4
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 7 5
NCBI_plasmid_sequences_(Plasmids) 998 320
TargetDB__(Targets) 86 28
Protein_Data_Bank_(all_PDB_sequenc) 87 70
STRING_v9.0.5_(STRING) 3338 1265
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 141 141
Uniprot_2018_03_genome 84294 32866
PDB_chains_(SCOP_1.75)_(PDB) 13 13
NCBI_2017_08_genome 134176 62743
Protozoadb_2010_08_(Protozoadb) 5 5

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