SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Hedgehog/intein (Hint) domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Hedgehog/intein (Hint) domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   3 3
Pan_troglodytes_76_2.1.4   (Chimpanzee)   2 2
Gorilla_gorilla_76_3.1   (Western gorilla)   6 6
Pongo_abelii_76_2   (Sumatran orangutan)   3 3
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3 3
Papio_anubis_76   (Olive baboon)   3 3
Macaca_mulatta_76_1   (Rhesus monkey)   3 3
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   4 4
Otolemur_garnettii_76_3   (Small-eared galago)   3 3
Microcebus_murinus_76_1   (Gray mouse lemur)   3 3
Rattus_norvegicus_76_5.0   (Norway rat)   3 3
Mus_musculus_76_38   (House mouse)   3 3
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   2 2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   3 3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   2 2
Cavia_porcellus_76_3   (Domestic guinea pig)   3 3
Oryctolagus_cuniculus_76_2   (Rabbit)   3 3
Ochotona_princeps_76   (American pika)   2 2
Tupaia_belangeri_76   (Northern tree shrew)   2 2
Sus_scrofa_76_10.2   (Pig)   3 3
Bos_taurus_76_3.1   (Cattle)   3 3
Ovis_aries_76_3.1   (Sheep)   4 4
Vicugna_pacos_76_1   (Alpaca)   1 1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   3 3
Mustela_putorius_furo_76_1.0   (Domestic ferret)   2 2
Ailuropoda_melanoleuca_76_1   (Giant panda)   3 3
Canis_familiaris_76_3.1   (Dog)   2 2
Felis_catus_76_6.2   (Domestic cat)   2 2
Equus_caballus_76_2   (Horse)   3 3
Myotis_lucifugus_76_2.0   (Little brown bat)   2 2
Pteropus_vampyrus_76_1   (Large flying fox)   3 3
Sorex_araneus_76_1   (European shrew)   1 1
Erinaceus_europaeus_76   (Western European hedgehog)   2 2
Procavia_capensis_76_1   (Cape rock hyrax)   3 3
Loxodonta_africana_76_3   (African savanna elephant)   7 7
Echinops_telfairi_76   (Small Madagascar hedgehog)   3 3
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   3 3
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_76_1.0   (Tammar wallaby)   3 3
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   4 4
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   2 2
Ornithorhynchus_anatinus_76_5   (Platypus)   2 2
Saccoglossus_kowalevskii_v3.0 1 1
Petromyzon_marinus_76_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_76_2   (Turkey)   3 3
Gallus_gallus_76_4   (Chicken)   2 2
Anas_platyrhynchos_76_1.0   (Mallard)   5 5
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   2 2
Ficedula_albicollis_76_1.0   (Collared flycatcher)   2 2
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   1 1
Anolis_carolinensis_76_2.0   (Green anole)   3 3
Xenopus_laevis_   (African clawed frog)   15 15
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   2 2
Latimeria_chalumnae_76_1   (Coelacanth)   3 3
Lepisosteus_oculatus_76   (Spotted gar)   3 3
Gadus_morhua_76_1   (Atlantic cod)   4 4
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   5 5
Takifugu_rubripes_76_4   (Torafugu)   7 7
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   5 5
Oryzias_latipes_76_1   (Japanese medaka)   4 4
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   4 4
Poecilia_formosa_76   (Amazon molly)   5 5
Oreochromis_niloticus_76_1.0   (Nile tilapia)   6 6
Astyanax_mexicanus_76   (Mexican tetra)   5 5
Danio_rerio_76_9   (Zebrafish)   7 7
Oikopleura_dioica 1 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   3 3
Ciona_intestinalis_76   (Vase tunicate)   2 2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1 1
Adineta_vaga 37 37
Octopus_bimaculoides_280 1 1
Crassostrea_gigas_22   (Pacific oyster)   1 1
Lottia_gigantea_   (Owl limpet)   10 9
Helobdella_robusta_ 2 1
Capitella_sp._I_ 2 2
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1 1
Bombyx_mori_   (Domestic silkworm)   1 1
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   6 6
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1 1
Linepithema_humile_v1.1   (Argentine ant)   1 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1 1
Atta_cephalotes_v1.1 1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1 1
Lucilia_cuprina   (Australian sheep blowfly)   1 1
Drosophila_grimshawi_1.3 1 1
Drosophila_willistoni_1.3 1 1
Drosophila_pseudoobscura_2.13 2 2
Drosophila_persimilis_1.3 1 1
Drosophila_suzukii 1 1
Drosophila_yakuba_1.3 1 1
Drosophila_simulans_1.3 1 1
Drosophila_sechellia_1.3 1 1
Drosophila_melanogaster_76_5   (Fruit fly)   1 1
Drosophila_erecta_1.3 1 1
Drosophila_ananassae_1.3 1 1
Drosophila_virilis_1.2 1 1
Drosophila_mojavensis_1.3 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1 1
Anopheles_darlingi_22   (American malaria mosquito)   1 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1 1
Tribolium_castaneum_3.0   (Red flour beetle)   1 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1 1
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Rhodnius_prolixus_22 1 1
Daphnia_pulex_   (Common water flea)   1 1
Strigamia_maritima_22 3 3
Sarcoptes_scabiei 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   1 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1 1
Pristionchus_pacificus_ 13 13
Meloidogyne_incognita_   (Southern root-knot nematode)   3 3
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 2 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2 2
Caenorhabditis_japonica_ 8 8
Caenorhabditis_brenneri_ 7 7
Caenorhabditis_remanei_ 7 7
Caenorhabditis_elegans_76_235   (Roundworm)   14 14
Caenorhabditis_briggsae_2 6 6
Trichinella_spiralis_22 5 5
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 1 1
Echinococcus_granulosus_ 1 1
Taenia_solium_   (Pork tapeworm)   1 1
Schistosoma_mansoni_ 1 1
Mnemiopsis_leidyi   (Sea walnut)   2 2
Acropora_digitifera_v1.0 9 9
Nematostella_vectensis_1.0   (Starlet sea anemone)   7 7
Hydra_vulgaris 4 4
Amphimedon_queenslandica 5 5
Proterospongia_sp._ATCC_50818_ 10 10
Monosiga_brevicollis_ 6 6
Sphaeroforma_arctica_JP610_ 2 2
Capsaspora_owczarzaki_ATCC_30864_ 3 2
Mortierella_verticillata_NRRL_6337_ 3 3
Phycomyces_blakesleeanus_ 2 2
Rhizomucor_miehei_CAU432_ 1 1
Mixia_osmundae_IAM_14324_v1.0 1 1
Piloderma_croceum_F_1598_v1.0 1 1
Galerina_marginata_v1.0 1 1
Sebacina_vermifera_MAFF_305830_v1.0 2 2
Daldinia_eschscholzii_EC12_v1.0 2 2
Podospora_anserina_ 3 3
Cryphonectria_parasitica_   (Chestnut blight fungus)   2 2
Verticillium_albo-atrum_VaMs.102_ 2 2
Verticillium_dahliae_VdLs.17_ 2 2
Acremonium_alcalophilumv_1.0 2 2
Glomerella_graminicola_22 1 1
Fusarium_graminearum_ 1 1
Nectria_haematococca_mpVI_ 3 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1 1
Fusarium_verticillioides_7600_ 1 1
Trichoderma_asperellum_CBS_433.97_v1.0 1 1
Trichoderma_atroviride_ 1 1
Trichoderma_citrinoviride_v1.0 2 2
Trichoderma_reesei_1.2 1 1
Trichoderma_harzianum_CBS_226.95_v1.0 1 1
Botrytis_cinerea_B05.10_ 2 1
Blumeria_graminis_22 1 1
Cochliobolus_carbonum_26-R-13_v1.0 1 1
Alternaria_brassicicola_ 1 1
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 2 2
Septoria_musiva_v1.0 1 1
Paracoccidioides_brasiliensis_Pb18_ 2 2
Ajellomyces_dermatitidis_SLH14081_ 2 2
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 2 2
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_equinum_CBS_127.97_ 1 1
Trichophyton_verrucosum_HKI_0517_ 1 1
Arthroderma_benhamiae_CBS_112371_ 1 1
Trichophyton_tonsurans_CBS_112818_ 1 1
Trichophyton_rubrum_CBS_118892_ 1 1
Uncinocarpus_reesii_1704_ 1 1
Aspergillus_fumigatus_Af293 2 1
Aspergillus_nidulans_FGSC_A4_ 1 1
Neosartorya_fischeri_NRRL_181_ 1 1
Aspergillus_tubingensis_v1.0 2 1
Pichia_membranifaciensv1.0 1 1
Candida_tropicalis_MYA-3404_ 1 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 1 1
Pichia_stipitis_CBS_6054_ 1 1
Candida_guilliermondii_ATCC_6260_ 1 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1 1
Debaromyces_hansenii 1 1
Wickerhamomyces_anomalus 1 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1 1
Vanderwaltozyma_polyspora_DSM_70294_ 2 2
Candida_glabrata_CBS138 2 2
Zygosaccharomyces_rouxii_ 2 2
Saccharomyces_mikatae_MIT 1 1
Saccharomyces_paradoxus_MIT 1 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   2 2
Saccharomyces_bayanus_MIT 1 1
Kluyveromyces_lactis 1 1
Schizosaccharomyces_japonicus_yFS275_ 1 1
Catenaria_anguillulae_PL171_v1.0 1 1
Allomyces_macrogynus_ATCC_38327_ 6 6
Spizellomyces_punctatus_DAOM_BR117_ 3 3
Dictyostelium_discoideum 1 1
Dictyostelium_purpureum_ 1 1
Selaginella_moellendorffii_ 34 34
Arabidopsis_thaliana_10   (Thale cress)   1 1
Physcomitrella_patens 1 1
Chlorella_variabilis_sp._NC64A_ 1 1
Cyanidioschyzon_merolae_strain_10D_22 15 15
Cyanidioschyzon_merolae 16 16
Porphyridium_purpureum_02_2012 30 30
Thecamonas_trahens_ATCC_50062_ 3 3
Bigelowiella_natans_CCMP2755_22 5 5
Giardia_lamblia_2.3 1 1
Cyanophora_paradoxa_ 2 2
Aureococcus_anophagefferens_ 2 2
Albugo_laibachii_22 2 2
Pythium_arrhenomanes_ATCC_12531_22 1 1
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Pythium_irregulare_DAOM_BR486_22 2 2
Pythium_vexans_DAOM_BR484_22 1 1
Hyaloperonospora_arabidopsidis_22 1 1
Fragilariopsis_cylindrus 1 1
Perkinsus_marinus_ATCC_50983_ 1 1
Paramecium_tetraurelia_ 1 1
Tetrahymena_thermophila_SB210_1_ 9 7
Ichthyophthirius_multifiliis_strain_G5_ 1 1
Cryptosporidium_hominis 1 1
Cryptosporidium_muris 1 1
Cryptosporidium_parvum_Iowa_II 1 1
Symbiodinium_minutum_clade_B1_v1.2 20 20
Naegleria_gruberi_ 1 1
Guillardia_theta_CCMP2712_v1.0_ 6 6
Emiliania_huxleyi_CCMP1516_ 20 20
Leptolyngbya_sp._PCC_7376 2 2
Pseudanabaena_sp._PCC_7367 1 1
Acaryochloris_marina_MBIC11017 1 1
Synechocystis_sp._PCC_6803 4 4
Thermosynechococcus_sp._NK55 1 1
Thermosynechococcus_elongatus_BP-1 1 1
Synechococcus_sp._PCC_7502 2 2
Synechococcus_sp._PCC_6312 4 3
Synechococcus_elongatus_PCC_7942 2 2
Microcoleus_sp._PCC_7113 1 1
Trichodesmium_erythraeum_IMS101 14 7
Geitlerinema_sp._PCC_7407 3 2
Cyanothece_sp._PCC_8802 2 2
Gloeocapsa_sp._PCC_7428 1 1
cyanobacterium_UCYN-A 1 1
Halothece_sp._PCC_7418 7 7
Microcystis_aeruginosa_NIES-843 2 2
Gloeobacter_violaceus_PCC_7421 9 8
Rivularia_sp._PCC_7116 6 6
Calothrix_sp._PCC_7507 5 5
Anabaena_variabilis_ATCC_29413 2 2
'Nostoc_azollae'_0708 4 3
Nostoc_sp._PCC_7107 7 6
Nostoc_punctiforme_PCC_73102 3 3
Nostoc_sp._PCC_7120 3 3
Nostoc_sp._PCC_7524 4 4
Anabaena_sp._90 5 4
Conexibacter_woesei_DSM_14684 1 1
Eggerthella_lenta_DSM_2243 1 1
Acidimicrobium_ferrooxidans_DSM_10331 2 2
Nakamurella_multipartita_DSM_44233 1 1
Acidothermus_cellulolyticus_11B 1 1
Modestobacter_marinus 4 4
Blastococcus_saxobsidens_DD2 1 1
Geodermatophilus_obscurus_DSM_43160 2 2
Kineococcus_radiotolerans_SRS30216 1 1
Catenulispora_acidiphila_DSM_44928 4 4
Frankia_sp._EAN1pec 1 1
Thermobifida_fusca_YX 4 3
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 3 2
Thermomonospora_curvata_DSM_43183 4 4
Kitasatospora_setae_KM-6054 7 7
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_sp._SirexAA-E 2 2
Streptomyces_bingchenggensis_BCW-1 1 1
Streptomyces_violaceusniger_Tu_4113 1 1
Streptomyces_avermitilis_MA-4680 4 4
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2 2
Streptomyces_scabiei_87.22 2 2
Actinosynnema_mirum_DSM_43827 6 6
Saccharomonospora_viridis_DSM_43017 1 1
Pseudonocardia_dioxanivorans_CB1190 1 1
Amycolatopsis_mediterranei_U32 3 3
Kribbella_flavida_DSM_17836 3 2
Nocardioides_sp._JS614 2 2
Microlunatus_phosphovorus_NM-1 1 1
Salinispora_arenicola_CNS-205 2 2
Salinispora_tropica_CNB-440 2 2
Verrucosispora_maris_AB-18-032 5 5
Micromonospora_sp._L5 3 3
Micromonospora_aurantiaca_ATCC_27029 5 5
Actinoplanes_sp._N902-109 3 3
Actinoplanes_sp._SE50/110 12 12
Actinoplanes_missouriensis_431 8 8
Gordonia_sp._KTR9 1 1
Gordonia_polyisoprenivorans_VH2 3 2
Rhodococcus_opacus_B4 2 2
Nocardia_farcinica_IFM_10152 3 3
Mycobacterium_intracellulare_ATCC_13950 1 1
Mycobacterium_avium_104 1 1
Mycobacterium_vanbaalenii_PYR-1 2 2
Mycobacterium_canettii_CIPT_140010059 3 3
Mycobacterium_africanum_GM041182 3 3
Mycobacterium_tuberculosis_KZN_1435 3 3
Mycobacterium_tuberculosis 3 3
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 3 3
Mycobacterium_rhodesiae_NBB3 2 2
Mycobacterium_gilvum_PYR-GCK 2 2
Mycobacterium_chubuense_NBB4 3 2
Mycobacterium_smegmatis_str._MC2_155 2 1
Mycobacterium_leprae_Br4923 4 4
Corynebacterium_aurimucosum_ATCC_700975 2 2
Microbacterium_testaceum_StLB037 1 1
Intrasporangium_calvum_DSM_43043 2 2
Isoptericola_variabilis_225 2 2
Cellulomonas_flavigena_DSM_20109 5 4
[Cellvibrio]_gilvus_ATCC_13127 1 1
Arthrobacter_sp._FB24 1 1
Herpetosiphon_aurantiacus_DSM_785 4 4
Roseiflexus_castenholzii_DSM_13941 1 1
Chloroflexus_sp._MS-G 1 1
Chloroflexus_sp._Y-400-fl 1 1
Chloroflexus_aggregans_DSM_9485 1 1
Chloroflexus_aurantiacus_J-10-fl 1 1
Truepera_radiovictrix_DSM_17093 3 3
Deinococcus_gobiensis_I-0 2 2
Deinococcus_geothermalis_DSM_11300 1 1
Deinococcus_proteolyticus_MRP 1 1
Deinococcus_radiodurans_R1 2 2
Meiothermus_silvanus_DSM_9946 1 1
Meiothermus_ruber_DSM_1279 2 2
Thermus_sp._CCB_US3_UF1 1 1
Thermus_scotoductus_SA-01 4 4
Thermus_thermophilus_HB27 4 2
Megasphaera_elsdenii_DSM_20460 1 1
Acidaminococcus_intestini_RyC-MR95 1 1
Acidaminococcus_fermentans_DSM_20731 1 1
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1 1
Clostridium_clariflavum_DSM_19732 14 14
Clostridium_thermocellum_ATCC_27405 11 11
Ruminococcus_albus_7 4 4
Sulfobacillus_acidophilus_DSM_10332 1 1
Candidatus_Desulforudis_audaxviator_MP104C 1 1
Syntrophobotulus_glycolicus_DSM_8271 2 2
Desulfitobacterium_hafniense_Y51 2 2
Desulfotomaculum_reducens_MI-1 1 1
Desulfotomaculum_acetoxidans_DSM_771 2 2
Desulfotomaculum_kuznetsovii_DSM_6115 1 1
Butyrivibrio_proteoclasticus_B316 1 1
Clostridium_kluyveri_DSM_555 1 1
Clostridium_cellulovorans_743B 1 1
Mahella_australiensis_50-1_BON 2 2
Caldicellulosiruptor_saccharolyticus_DSM_8903 2 2
Caldicellulosiruptor_bescii_DSM_6725 2 2
Thermoanaerobacterium_xylanolyticum_LX-11 1 1
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 1 1
Tepidanaerobacter_acetatoxydans_Re1 1 1
Carboxydothermus_hydrogenoformans_Z-2901 1 1
Ammonifex_degensii_KC4 1 1
Halanaerobium_hydrogeniformans 1 1
Halanaerobium_praevalens_DSM_2228 1 1
Kyrpidia_tusciae_DSM_2912 1 1
Bacillus_selenitireducens_MLS10 2 2
Bacillus_subtilis_subsp._subtilis_str._168 1 1
Bacillus_weihenstephanensis_KBAB4 1 1
Staphylococcus_epidermidis_RP62A 1 1
Ignavibacterium_album_JCM_16511 1 1
Chlorobium_luteolum_DSM_273 1 1
Chlorobium_chlorochromatii_CaD3 1 1
Chloroherpeton_thalassium_ATCC_35110 2 1
Haliscomenobacter_hydrossis_DSM_1100 2 2
Chitinophaga_pinensis_DSM_2588 2 2
Salinibacter_ruber_M8 3 3
Rhodothermus_marinus_DSM_4252 4 4
Flexibacter_litoralis_DSM_6794 3 2
Fibrella_aestuarina 3 3
Dyadobacter_fermentans_DSM_18053 1 1
Spirosoma_linguale_DSM_74 1 1
Runella_slithyformis_DSM_19594 1 1
Solitalea_canadensis_DSM_3403 1 1
Sphingobacterium_sp._21 3 2
Flavobacterium_johnsoniae_UW101 1 1
Isosphaera_pallida_ATCC_43644 1 1
Planctomyces_limnophilus_DSM_3776 1 1
Rhodopirellula_baltica_SH_1 1 1
Pirellula_staleyi_DSM_6068 1 1
Thermovirga_lienii_DSM_17291 1 1
Leptospira_interrogans_serovar_Lai_str._IPAV 5 3
Sphaerochaeta_globus_str._Buddy 1 1
Treponema_azotonutricium_ZAS-9 1 1
Thermodesulfatator_indicus_DSM_15286 1 1
Thermodesulfobacterium_sp._OPB45 2 1
Desulfurobacterium_thermolithotrophum_DSM_11699 2 2
Sulfurihydrogenibium_azorense_Az-Fu1 1 1
Persephonella_marina_EX-H1 2 2
Aquifex_aeolicus_VF5 1 1
Dictyoglomus_thermophilum_H-6-12 1 1
Caldisericum_exile_AZM16c01 1 1
Candidatus_Chloracidobacterium_thermophilum_B 3 2
Thermodesulfovibrio_yellowstonii_DSM_11347 2 1
Sebaldella_termitidis_ATCC_33386 3 3
Leptotrichia_buccalis_C-1013-b 1 1
Candidatus_Methylomirabilis_oxyfera 1 1
candidate_division_SR1_bacterium_RAAC1_SR1_1 4 3
Acidithiobacillus_caldus_SM-1 1 1
Bacteriovorax_marinus_SJ 1 1
Bdellovibrio_bacteriovorus_HD100 1 1
Sulfurovum_sp._NBC37-1 1 1
Desulfatibacillum_alkenivorans_AK-01 2 2
Desulfovibrio_magneticus_RS-1 1 1
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 1 1
Hippea_maritima_DSM_10411 2 2
Haliangium_ochraceum_DSM_14365 6 6
Sorangium_cellulosum_'So_ce_56' 1 1
Anaeromyxobacter_dehalogenans_2CP-1 1 1
Stigmatella_aurantiaca_DW4/3-1 8 8
Corallococcus_coralloides_DSM_2259 1 1
Myxococcus_xanthus_DK_1622 6 6
Chromobacterium_violaceum_ATCC_12472 1 1
Neisseria_meningitidis_alpha14 4 4
Neisseria_meningitidis_FAM18 5 5
Neisseria_lactamica_020-06 3 3
Neisseria_gonorrhoeae_NCCP11945 9 9
beta_proteobacterium_CB 1 1
Thiomonas_arsenitoxydans 1 1
Polynucleobacter_necessarius_subsp._asymbioticus_QLW-P1DMWA-1 1 1
Burkholderia_vietnamiensis_G4 1 1
Burkholderia_gladioli_BSR3 1 1
Verminephrobacter_eiseniae_EF01-2 3 3
Delftia_sp._Cs1-4 1 1
Delftia_acidovorans_SPH-1 1 1
Polaromonas_sp._JS666 2 2
Polaromonas_naphthalenivorans_CJ2 1 1
Acidovorax_sp._KKS102 1 1
Acidovorax_citrulli_AAC00-1 2 2
Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1
Advenella_kashmirensis_WT001 6 6
Asticcacaulis_excentricus_CB_48 1 1
Caulobacter_sp._K31 1 1
Dinoroseobacter_shibae_DFL_12 9 9
Phaeobacter_gallaeciensis_2.10 9 9
Pseudovibrio_sp._FO-BEG1 1 1
Jannaschia_sp._CCS1 11 11
Ruegeria_sp._TM1040 14 14
Ruegeria_pomeroyi_DSS-3 16 16
Ketogulonicigenium_vulgare_Y25 8 8
Ketogulonigenium_vulgarum_WSH-001 8 8
Roseobacter_denitrificans_OCh_114 1 1
Rhodobacter_sphaeroides_ATCC_17029 2 2
Rhodobacter_capsulatus_SB_1003 12 12
Paracoccus_denitrificans_PD1222 2 2
Tistrella_mobilis_KA081020-065 1 1
Rhodospirillum_centenum_SW 2 2
Azospirillum_sp._B510 1 1
Gluconacetobacter_xylinus_NBRC_3288 1 1
Granulibacter_bethesdensis_CGDNIH1 7 7
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Acidiphilium_multivorum_AIU301 7 7
Acidiphilium_cryptum_JF-5 7 7
Gluconobacter_oxydans_621H 8 8
Acetobacter_pasteurianus_IFO_3283-01 23 23
Polymorphum_gilvum_SL003B-26A1 1 1
Xanthobacter_autotrophicus_Py2 1 1
Methylobacterium_chloromethanicum_CM4 1 1
Methylobacterium_extorquens_AM1 3 3
Methylobacterium_sp._4-46 5 5
Methylobacterium_populi_BJ001 3 3
Methylobacterium_nodulans_ORS_2060 3 3
Methylobacterium_radiotolerans_JCM_2831 1 1
Ochrobactrum_anthropi_ATCC_49188 1 1
Brucella_microti_CCM_4915 1 1
Brucella_pinnipedialis_B2/94 1 1
Brucella_suis_ATCC_23445 1 1
Brucella_melitensis_ATCC_23457 1 1
Brucella_ovis_ATCC_25840 1 1
Brucella_abortus_S19 1 1
Sinorhizobium_fredii_NGR234 2 2
Sinorhizobium_medicae_WSM419 1 1
Sinorhizobium_meliloti_AK83 2 2
Rhizobium_leguminosarum_bv._viciae_3841 1 1
Agrobacterium_radiobacter_K84 2 2
Bradyrhizobium_sp._ORS_278 2 2
Pasteurella_multocida_subsp._multocida_str._3480 1 1
Aeromonas_veronii_B565 1 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1 1
Shewanella_piezotolerans_WP3 1 1
Shewanella_frigidimarina_NCIMB_400 1 1
Alteromonas_macleodii_str._'Deep_ecotype' 1 1
Hahella_chejuensis_KCTC_2396 1 1
Halomonas_elongata_DSM_2581 4 4
Methylomicrobium_alcaliphilum 1 1
Methylococcus_capsulatus_str._Bath 2 2
Rhodanobacter_denitrificans 1 1
Spiribacter_sp._UAH-SP71 1 1
Alkalilimnicola_ehrlichii_MLHE-1 3 2
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1 1
Thioalkalivibrio_sp._K90mix 1 1
Halorhodospira_halophila_SL1 2 1
Allochromatium_vinosum_DSM_180 6 4
Thiocystis_violascens_DSM_198 3 3
Nitrosococcus_watsonii_C-113 1 1
Nitrosococcus_halophilus_Nc4 3 2
Nitrosococcus_oceani_ATCC_19707 1 1
Coxiella_burnetii_Dugway_5J108-111 1 1
Photorhabdus_asymbiotica 2 2
Photorhabdus_luminescens_subsp._laumondii_TTO1 1 1
Xenorhabdus_nematophila_ATCC_19061 1 1
Serratia_proteamaculans_568 1 1
Pantoea_sp._At-9b 1 1
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 1 1
Shigella_flexneri_5_str._8401 1 1
Azotobacter_vinelandii_DJ 1 1
Pseudomonas_syringae_pv._tomato_str._DC3000 1 1
Pseudomonas_protegens_Pf-5 1 1
Pseudomonas_fluorescens_SBW25 1 1
Acinetobacter_oleivorans_DR1 1 1
Candidatus_Caldiarchaeum_subterraneum 2 2
Fervidicoccus_fontis_Kam940 3 3
Aeropyrum_pernix_K1 1 1
Thermosphaera_aggregans_DSM_11486 1 1
Staphylothermus_hellenicus_DSM_12710 1 1
Staphylothermus_marinus_F1 2 2
Desulfurococcus_fermentans_DSM_16532 1 1
Desulfurococcus_kamchatkensis_1221n 1 1
Vulcanisaeta_moutnovskia_768-28 2 2
Vulcanisaeta_distributa_DSM_14429 1 1
Caldivirga_maquilingensis_IC-167 2 2
Pyrobaculum_arsenaticum_DSM_13514 1 1
Pyrobaculum_oguniense_TE7 1 1
Thermoproteus_neutrophilus_V24Sta 1 1
halophilic_archaeon_DL31 7 6
Methanocella_arvoryzae_MRE50 1 1
Methanosaeta_harundinacea_6Ac 1 1
Methanosaeta_concilii_GP6 1 1
Methanosalsum_zhilinae_DSM_4017 2 2
Methanohalobium_evestigatum_Z-7303 1 1
Methanococcoides_burtonii_DSM_6242 1 1
Methanosphaerula_palustris_E1-9c 2 2
Methanoregula_boonei_6A8 1 1
Methanospirillum_hungatei_JF-1 1 1
Methanoplanus_petrolearius_DSM_11571 1 1
Methanoculleus_bourgensis_MS2 4 3
Methanoculleus_marisnigri_JR1 2 2
Methanopyrus_kandleri_AV19 5 5
Ferroglobus_placidus_DSM_10642 1 1
Archaeoglobus_profundus_DSM_5631 14 13
Archaeoglobus_veneficus_SNP6 3 2
Thermococcus_sp._4557 6 5
Thermococcus_onnurineus_NA1 4 4
Thermococcus_kodakarensis_KOD1 15 12
Thermococcus_gammatolerans_EJ3 5 4
Thermococcus_sibiricus_MM_739 11 9
Thermococcus_barophilus_MP 7 6
Pyrococcus_sp._ST04 11 10
Pyrococcus_yayanosii_CH1 9 8
Pyrococcus_horikoshii_OT3 14 13
Pyrococcus_abyssi_GE5 14 10
Pyrococcus_furiosus_COM1 10 9
Thermoplasma_volcanium_GSS1 1 1
Thermoplasma_acidophilum_DSM_1728 1 1
Picrophilus_torridus_DSM_9790 1 1
Salinarchaeum_sp._Harcht-Bsk1 1 1
Natrinema_sp._J7-2 2 1
Natrialba_magadii_ATCC_43099 6 5
Halorubrum_lacusprofundi_ATCC_49239 1 1
Haloquadratum_walsbyi_DSM_16790 15 8
Halogeometricum_borinquense_DSM_11551 2 1
Haloferax_mediterranei_ATCC_33500 4 3
Haloferax_volcanii_DS2 1 1
Halomicrobium_mukohataei_DSM_12286 3 3
Halorhabdus_utahensis_DSM_12940 4 3
Natronomonas_pharaonis_DSM_2160 4 3
Haloarcula_hispanica_ATCC_33960 3 3
Haloarcula_marismortui_ATCC_43049 4 4
Halobacterium_salinarum_R1 2 2
Halobacterium_sp._NRC-1 2 2
Methanotorris_igneus_Kol_5 9 9
Methanocaldococcus_sp._FS406-22 11 9
Methanocaldococcus_fervens_AG86 3 2
Methanocaldococcus_vulcanius_M7 18 16
methanocaldococcus_infernus_ME 8 8
Methanocaldococcus_jannaschii_DSM_2661 20 15
Methanothermococcus_okinawensis_IH1 6 6
Methanococcus_aeolicus_Nankai-3 6 6
Methanothermus_fervidus_DSM_2088 6 6
Methanothermobacter_marburgensis_str._Marburg 1 1
Methanothermobacter_thermautotrophicus_str._Delta_H 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   4 4
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   2 2
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1 1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   5 5
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   11 11
Cryptococcus_neoformans_var._grubii_H99_ 1 1
Cryptococcus_neoformans_B-3501A_ 1 1
Cryptococcus_neoformans_JEC21_ 1 1
Paracoccidioides_brasiliensis_Pb01_ 1 1
Paracoccidioides_brasiliensis_Pb03_ 1 1
Ajellomyces_dermatitidis_ER-3_ 2 2
Histoplasma_capsulatum_H143 1 1
Histoplasma_capsulatum_H88 2 2
Histoplasma_capsulatum_G186AR 2 2
Aspergillus_fumigatus_A1163_ 2 1
Saccharomyces_cerevisiae_UC5 1 1
Saccharomyces_cerevisiae_PW5 1 1
Saccharomyces_cerevisiae_YJM269 1 1
Saccharomyces_cerevisiae_T7 1 1
Saccharomyces_cerevisiae_FostersB 2 2
Saccharomyces_cerevisiae_FostersO 2 2
Saccharomyces_cerevisiae_VL3 2 2
Saccharomyces_cerevisiae_Vin13 2 2
Saccharomyces_cerevisiae_LalvinQA23 2 2
Saccharomyces_cerevisiae_AWRI796 2 2
Saccharomyces_cerevisiae_Sigma1278b 2 2
Saccharomyces_cerevisiae_W303 1 1
Saccharomyces_cerevisiae_JAY291 1 1
Saccharomyces_cerevisiae_M22 1 1
Saccharomyces_cerevisiae_CLIB215 2 2
Saccharomyces_cerevisiae_YJM789_ 3 3
Saccharomyces_cerevisiae_YJM789 2 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   2 2
Batrachochytrium_dendrobatidis_JEL423_ 5 4
Batrachochytrium_dendrobatidis_JAM81_ 1 1
Chroococcidiopsis_thermalis_PCC_7203 3 3
Chamaesiphon_minutus_PCC_6605 1 1
Synechocystis_sp._PCC_6803_substr._PCC-P 4 4
Synechocystis_sp._PCC_6803_substr._PCC-N 4 4
Synechocystis_sp._PCC_6803_substr._GT-I 4 4
Synechocystis_sp._PCC_6803 4 4
Dactylococcopsis_salina_PCC_8305 15 10
Synechococcus_sp._JA-2-3B'a(2-13) 2 2
Synechococcus_sp._JA-3-3Ab 2 2
Synechococcus_sp._PCC_7002 3 3
Synechococcus_elongatus_PCC_6301 2 2
Crinalium_epipsammum_PCC_9333 3 3
Oscillatoria_nigro-viridis_PCC_7112 9 8
Oscillatoria_acuminata_PCC_6304 8 7
Arthrospira_platensis_NIES-39 3 3
Cyanothece_sp._PCC_7822 6 5
Cyanothece_sp._PCC_7425 3 2
Cyanothece_sp._PCC_7424 4 4
Cyanothece_sp._ATCC_51142 2 2
Cyanothece_sp._PCC_8801 2 2
Cyanobacterium_aponinum_PCC_10605 4 4
Cyanobacterium_stanieri_PCC_7202 6 5
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1 1
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1 1
Stanieria_cyanosphaera_PCC_7437 4 4
Calothrix_parietina_Calothrix_sp._PCC_6303 5 5
Cylindrospermum_stagnale_PCC_7417 4 4
Anabaena_cylindrica_PCC_7122 5 5
Frankia_sp._EuI1c 1 1
Frankia_sp._CcI3 1 1
Nocardiopsis_alba_ATCC_BAA-2165 5 4
Streptomyces_albus_J1074 1 1
Streptomyces_davawensis_JCM_4913 2 2
Streptomyces_fulvissimus_DSM_40593 1 1
Streptomyces_venezuelae_ATCC_10712 3 3
Streptomyces_collinus_Tu_365 2 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 3 3
Saccharothrix_espanaensis_DSM_44229 11 10
Amycolatopsis_mediterranei_RB 3 3
Amycolatopsis_mediterranei_S699 3 3
Amycolatopsis_mediterranei_S699 3 3
Amycolatopsis_orientalis_HCCB10007 1 1
Actinoplanes_friuliensis_DSM_7358 6 6
Rhodococcus_pyridinivorans_SB3094 1 1
Nocardia_brasiliensis_ATCC_700358 2 1
Mycobacterium_sp._MOTT36Y 2 1
Mycobacterium_sp._JDM601 2 2
Mycobacterium_abscessus_subsp._bolletii_50594 1 1
Mycobacterium_sp._KMS 2 2
Mycobacterium_sp._MCS 2 2
Mycobacterium_yongonense_05-1390 2 1
Mycobacterium_intracellulare_MOTT-64 2 2
Mycobacterium_indicus_pranii_MTCC_9506 1 1
Mycobacterium_intracellulare_MOTT-02 2 2
Mycobacterium_avium_subsp._paratuberculosis_MAP4 1 1
Mycobacterium_avium_subsp._paratuberculosis_K-10 1 1
Mycobacterium_canettii_CIPT_140070017 3 3
Mycobacterium_canettii_CIPT_140060008 3 3
Mycobacterium_canettii_CIPT_140070008 3 3
Mycobacterium_canettii_CIPT_140070010 4 3
Mycobacterium_tuberculosis_EAI5/NITR206 3 3
Mycobacterium_tuberculosis_EAI5 3 3
Mycobacterium_tuberculosis_CAS/NITR204 3 3
Mycobacterium_tuberculosis_str._Beijing/NITR203 3 3
Mycobacterium_tuberculosis_UT205 3 3
Mycobacterium_tuberculosis_RGTB423 2 2
Mycobacterium_tuberculosis_RGTB327 3 3
Mycobacterium_tuberculosis_CTRI-2 3 3
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 3 3
Mycobacterium_tuberculosis_KZN_605 2 2
Mycobacterium_tuberculosis_KZN_4207 3 3
Mycobacterium_tuberculosis_CCDC5180 3 3
Mycobacterium_tuberculosis_CCDC5079 3 3
Mycobacterium_tuberculosis_CCDC5079 3 3
Mycobacterium_tuberculosis_H37Ra 3 3
Mycobacterium_tuberculosis_str._Haarlem/NITR202 4 4
Mycobacterium_tuberculosis_str._Haarlem 3 3
Mycobacterium_tuberculosis_F11 3 3
Mycobacterium_tuberculosis_H37Rv 3 3
Mycobacterium_tuberculosis_CDC1551 3 3
Mycobacterium_bovis_AF2122/97 3 3
Mycobacterium_bovis_BCG_str._Korea_1168P 3 3
Mycobacterium_bovis_BCG_str._Mexico 3 3
Mycobacterium_bovis_BCG_str._Tokyo_172 3 3
Mycobacterium_gilvum_Spyr1 2 2
Mycobacterium_smegmatis_str._MC2_155 2 1
Mycobacterium_leprae_TN 4 4
Mycobacterium_kansasii_ATCC_12478 3 3
Corynebacterium_maris_DSM_45190 1 1
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 1 1
Bifidobacterium_longum_subsp._longum_JCM_1217 2 2
Chthonomonas_calidirosea_T49 1 1
Deinococcus_peraridilitoris_DSM_19664 2 2
Thermus_oshimai_JL-2 2 2
Thermus_thermophilus_JL-18 3 2
Thermus_thermophilus_SG0.5JP17-16 7 4
Thermus_thermophilus_HB8 5 2
Clostridium_thermocellum_DSM_1313 9 9
Sulfobacillus_acidophilus_TPY 1 1
Clostridium_acidurici_9a 1 1
Desulfitobacterium_hafniense_DCB-2 2 2
Desulfotomaculum_gibsoniae_DSM_7213 3 3
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 2 2
Clostridium_kluyveri_NBRC_12016 1 1
Clostridium_pasteurianum_BC1 1 1
Clostridium_botulinum_Ba4_str._657 1 1
Thermoanaerobacterium_saccharolyticum_JW/SL-YS485 1 1
Thermacetogenium_phaeum_DSM_12270 1 1
Halobacteroides_halobius_DSM_5150 2 1
Streptococcus_constellatus_subsp._pharyngis_C1050 1 1
Streptococcus_constellatus_subsp._pharyngis_C818 1 1
Streptococcus_constellatus_subsp._pharyngis_C232 1 1
Streptococcus_suis_D12 1 1
Bacillus_amyloliquefaciens_XH7 1 1
Bacillus_amyloliquefaciens_TA208 1 1
Bacillus_thuringiensis_HD-789 1 1
Bacillus_cereus_B4264 1 1
Staphylococcus_aureus_subsp._aureus_Z172 1 1
Staphylococcus_aureus_subsp._aureus_TW20 1 1
Salinibacter_ruber_DSM_13855 3 3
Rhodothermus_marinus_SG0.5JP17-172 5 4
Singulisphaera_acidiphila_DSM_18658 6 6
Leptospira_interrogans_serovar_Lai_str._56601 5 3
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 6 4
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Desulfobacula_toluolica_Tol2 1 1
Sorangium_cellulosum_So0157-2 1 1
Myxococcus_stipitatus_DSM_14675 7 7
Neisseria_meningitidis_WUE_2594 3 3
Neisseria_meningitidis_G2136 4 4
Neisseria_meningitidis_M04-240196 3 3
Neisseria_meningitidis_M01-240149 2 2
Neisseria_meningitidis_NZ-05/33 2 2
Neisseria_meningitidis_M01-240355 3 3
Neisseria_meningitidis_8013 4 4
Neisseria_meningitidis_053442 5 5
Neisseria_meningitidis_Z2491 1 1
Neisseria_meningitidis_H44/76 4 4
Neisseria_meningitidis_alpha710 4 4
Neisseria_meningitidis_MC58 3 3
Neisseria_gonorrhoeae_TCDC-NG08107 10 10
Neisseria_gonorrhoeae_FA_1090 6 6
Burkholderia_cenocepacia_MC0-3 1 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 1 1
Phaeobacter_gallaeciensis_DSM_17395 9 9
Phaeobacter_gallaeciensis_DSM_26640 10 10
Leisingera_methylohalidivorans_DSM_14336 12 12
Octadecabacter_antarcticus_307 6 6
Octadecabacter_arcticus_238 9 9
Rhodobacter_sphaeroides_KD131 1 1
Rhodobacter_sphaeroides_ATCC_17025 1 1
Rhodobacter_sphaeroides_2.4.1 2 2
Paracoccus_aminophilus_JCM_7686 19 19
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Gluconobacter_oxydans_H24 16 16
Acetobacter_pasteurianus_386B 29 29
Acetobacter_pasteurianus_IFO_3283-12 23 23
Acetobacter_pasteurianus_IFO_3283-01-42C 23 23
Acetobacter_pasteurianus_IFO_3283-32 23 23
Acetobacter_pasteurianus_IFO_3283-26 23 23
Acetobacter_pasteurianus_IFO_3283-22 23 23
Acetobacter_pasteurianus_IFO_3283-07 23 23
Acetobacter_pasteurianus_IFO_3283-03 23 23
Methylobacterium_extorquens_DM4 3 3
Methylobacterium_extorquens_PA1 4 4
Brucella_ceti_TE10759-12 1 1
Brucella_ceti_TE28753-12 1 1
Brucella_suis_VBI22 1 1
Brucella_suis_1330 1 1
Brucella_suis_1330 1 1
Brucella_melitensis_NI 1 1
Brucella_melitensis_M5-90 1 1
Brucella_melitensis_M28 1 1
Brucella_melitensis_bv._1_str._16M 1 1
Brucella_abortus_A13334 1 1
Brucella_melitensis_biovar_Abortus_2308 1 1
Sinorhizobium_fredii_USDA_257 1 1
Sinorhizobium_fredii_HH103 1 1
Sinorhizobium_meliloti_Rm41 2 2
Sinorhizobium_meliloti_SM11 2 2
Rhizobium_etli_CFN_42 1 1
Rhizobium_etli_bv._mimosae_str._Mim1 1 1
Rhizobium_tropici_CIAT_899 2 2
Rhizobium_leguminosarum_bv._trifolii_WSM1325 1 1
Hyphomicrobium_denitrificans_1NES1 1 1
Bradyrhizobium_oligotrophicum_S58 1 1
Aggregatibacter_actinomycetemcomitans_D11S-1 1 1
Mannheimia_haemolytica_USMARC_2286 1 1
Mannheimia_haemolytica_M42548 1 1
Mannheimia_haemolytica_D174 1 1
Mannheimia_haemolytica_D171 1 1
Mannheimia_haemolytica_D153 1 1
Mannheimia_haemolytica_USDA-ARS-USMARC-183 1 1
Mannheimia_haemolytica_USDA-ARS-USMARC-185 1 1
Pasteurella_multocida_subsp._multocida_str._HN06 1 1
Aeromonas_hydrophila_ML09-119 1 1
Xanthomonas_oryzae_pv._oryzicola_BLS256 1 1
Thioalkalivibrio_nitratireducens_DSM_14787 1 1
Coxiella_burnetii_CbuK_Q154 1 1
Coxiella_burnetii_CbuG_Q212 1 1
Coxiella_burnetii_RSA_331 1 1
Coxiella_burnetii_RSA_493 1 1
Serratia_plymuthica_S13 1 1
Shigella_flexneri_2002017 1 1
Shigella_flexneri_2a_str._2457T 1 1
Shigella_flexneri_2a_str._301 1 1
Escherichia_coli_Xuzhou21 1 1
Escherichia_coli_O111:H-_str._11128 1 1
Azotobacter_vinelandii_CA6 1 1
Azotobacter_vinelandii_CA 1 1
Pseudomonas_putida_H8234 1 1
Pseudomonas_putida_BIRD-1 1 1
Pseudomonas_fluorescens_A506 1 1
Acinetobacter_genomosp._13TU__RUH2624 1 1
Acinetobacter_baumannii_ZW85-1 4 4
Acinetobacter_baumannii_TYTH-1 1 1
Acinetobacter_baumannii_BJAB0868 1 1
Acinetobacter_baumannii_BJAB0715 1 1
Acinetobacter_baumannii_BJAB07104 1 1
Acinetobacter_baumannii_TCDC-AB0715 2 2
Acinetobacter_baumannii_MDR-TJ 1 1
Acinetobacter_baumannii_MDR-ZJ06 1 1
Acinetobacter_baumannii_AB0057 1 1
Acinetobacter_baumannii_ACICU 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 3 2
Caldisphaera_lagunensis_DSM_15908 1 1
Methanomethylovorans_hollandica_DSM_15978 2 2
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1 1
Archaeoglobus_sulfaticallidus_PM70-1 1 1
Thermococcus_sp._AM4 13 10
Thermococcus_sp._CL1 8 4
Thermococcus_litoralis_DSM_5473 16 12
Pyrococcus_sp._NA2 14 11
Pyrococcus_furiosus_DSM_3638 10 9
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 3 2
Ferroplasma_acidarmanus_fer1 2 2
Natrinema_pellirubrum_DSM_15624 5 5
Natronococcus_occultus_SP4 6 4
Natronobacterium_gregoryi_SP2 1 1
Haloquadratum_walsbyi_C23 15 8
Halorhabdus_tiamatea_SARL4B 11 6
Natronomonas_moolapensis_8.8.11 7 5
Haloarcula_hispanica_N601 3 3

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   3 3
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_69_3.1   (Western gorilla)   3 3
Pongo_abelii_69_2   (Sumatran orangutan)   3 3
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3 3
Macaca_mulatta_69_1   (Rhesus monkey)   3 3
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   3 3
Otolemur_garnettii_69_3   (Small-eared galago)   3 3
Microcebus_murinus_69_1   (Gray mouse lemur)   3 3
Rattus_norvegicus_69_3.4   (Norway rat)   3 3
Mus_musculus_69_38   (House mouse)   3 3
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   2 2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3 3
Cavia_porcellus_69_3   (Domestic guinea pig)   3 3
Oryctolagus_cuniculus_69_2   (Rabbit)   2 2
Ochotona_princeps_69   (American pika)   2 2
Tupaia_belangeri_69   (Northern tree shrew)   2 2
Sus_scrofa_69_10.2   (Pig)   3 3
Bos_taurus_69_3.1   (Cattle)   3 3
Vicugna_pacos_69_1   (Alpaca)   1 1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   3 3
Mustela_putorius_furo_69_1.0   (Domestic ferret)   2 2
Ailuropoda_melanoleuca_69_1   (Giant panda)   3 3
Canis_familiaris_69_3.1   (Dog)   2 2
Felis_catus_69   (Domestic cat)   1 1
Equus_caballus_69_2   (Horse)   3 3
Myotis_lucifugus_69_2.0   (Little brown bat)   2 2
Pteropus_vampyrus_69_1   (Large flying fox)   3 3
Sorex_araneus_69_1   (European shrew)   1 1
Erinaceus_europaeus_69   (Western European hedgehog)   2 2
Procavia_capensis_69_1   (Cape rock hyrax)   3 3
Loxodonta_africana_69_3   (African savanna elephant)   3 3
Echinops_telfairi_69   (Small Madagascar hedgehog)   3 3
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   2 2
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   2 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   3 3
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   3 3
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   2 2
Ornithorhynchus_anatinus_69_5   (Platypus)   2 2
Petromyzon_marinus_69_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_69_2   (Turkey)   2 2
Gallus_gallus_69_2   (Chicken)   2 2
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   2 2
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1 1
Anolis_carolinensis_69_2.0   (Green anole)   3 3
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   2 2
Latimeria_chalumnae_69_1   (Coelacanth)   3 3
Gadus_morhua_69_1   (Atlantic cod)   4 4
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   4 4
Takifugu_rubripes_69_4   (Torafugu)   4 4
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   4 4
Oryzias_latipes_69_1   (Japanese medaka)   4 4
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   4 4
Oreochromis_niloticus_69_1.0   (Nile tilapia)   4 4
Danio_rerio_69_9   (Zebrafish)   5 5
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   2 2
Ciona_intestinalis_69   (Vase tunicate)   2 2
Drosophila_melanogaster_69_5   (Fruit fly)   1 1
Caenorhabditis_elegans_69_215   (Roundworm)   10 10
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   2 2

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   3 3
Homo_sapiens__(NCBI_version)   (Human)   3 3
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3 3
Loa_loa_v3.3_(Request)   (Eye worm)   2 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3 3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2 2
Guillardia_theta_(nucleomorph) 1 1
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 3 3
NCBI_plasmid_sequences_(Plasmids) 92 92
TargetDB__(Targets) 69 64
Protein_Data_Bank_(all_PDB_sequenc) 79 76
UniProt__viral_sequences_(Viral) 79 79
Protozoadb_2010_08_(Protozoadb) 7 7
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 135 135
NCBI_viral_sequences_(Viral) 211 210
STRING_v9.0.5_(STRING) 869 812
PDB_chains_(SCOP_1.75)_(PDB) 9 9
Uniprot_2018_03_genome 20894 19917
NCBI_2017_08_genome 46464 45427

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