SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for PA domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a PA domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   64 64
Pan_troglodytes_76_2.1.4   (Chimpanzee)   17 17
Gorilla_gorilla_76_3.1   (Western gorilla)   20 20
Pongo_abelii_76_2   (Sumatran orangutan)   20 20
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   15 15
Papio_anubis_76   (Olive baboon)   15 15
Macaca_mulatta_76_1   (Rhesus monkey)   29 29
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   30 30
Otolemur_garnettii_76_3   (Small-eared galago)   17 17
Microcebus_murinus_76_1   (Gray mouse lemur)   18 16
Rattus_norvegicus_76_5.0   (Norway rat)   17 17
Mus_musculus_76_38   (House mouse)   27 27
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   14 14
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   13 13
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   13 13
Cavia_porcellus_76_3   (Domestic guinea pig)   11 11
Oryctolagus_cuniculus_76_2   (Rabbit)   17 17
Ochotona_princeps_76   (American pika)   12 11
Tupaia_belangeri_76   (Northern tree shrew)   10 10
Sus_scrofa_76_10.2   (Pig)   17 17
Bos_taurus_76_3.1   (Cattle)   15 15
Ovis_aries_76_3.1   (Sheep)   17 17
Vicugna_pacos_76_1   (Alpaca)   10 9
Tursiops_truncatus_76_1   (Bottlenose dolphin)   14 14
Mustela_putorius_furo_76_1.0   (Domestic ferret)   15 15
Ailuropoda_melanoleuca_76_1   (Giant panda)   20 20
Canis_familiaris_76_3.1   (Dog)   15 15
Felis_catus_76_6.2   (Domestic cat)   15 15
Equus_caballus_76_2   (Horse)   17 17
Myotis_lucifugus_76_2.0   (Little brown bat)   16 16
Pteropus_vampyrus_76_1   (Large flying fox)   18 17
Sorex_araneus_76_1   (European shrew)   7 7
Erinaceus_europaeus_76   (Western European hedgehog)   11 11
Procavia_capensis_76_1   (Cape rock hyrax)   14 13
Loxodonta_africana_76_3   (African savanna elephant)   16 16
Echinops_telfairi_76   (Small Madagascar hedgehog)   17 16
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   22 22
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   9 9
Macropus_eugenii_76_1.0   (Tammar wallaby)   17 16
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   19 19
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   18 18
Ornithorhynchus_anatinus_76_5   (Platypus)   12 12
Saccoglossus_kowalevskii_v3.0 12 12
Petromyzon_marinus_76_7.0   (Sea lamprey)   3 3
Meleagris_gallopavo_76_2   (Turkey)   12 12
Gallus_gallus_76_4   (Chicken)   11 11
Anas_platyrhynchos_76_1.0   (Mallard)   12 12
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   13 13
Ficedula_albicollis_76_1.0   (Collared flycatcher)   14 14
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   16 16
Anolis_carolinensis_76_2.0   (Green anole)   14 14
Xenopus_laevis_   (African clawed frog)   23 23
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   13 13
Latimeria_chalumnae_76_1   (Coelacanth)   18 18
Lepisosteus_oculatus_76   (Spotted gar)   21 21
Gadus_morhua_76_1   (Atlantic cod)   13 13
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   15 15
Takifugu_rubripes_76_4   (Torafugu)   43 43
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   19 19
Oryzias_latipes_76_1   (Japanese medaka)   17 17
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   17 17
Poecilia_formosa_76   (Amazon molly)   15 15
Oreochromis_niloticus_76_1.0   (Nile tilapia)   19 19
Astyanax_mexicanus_76   (Mexican tetra)   15 15
Danio_rerio_76_9   (Zebrafish)   23 23
Oikopleura_dioica 7 7
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   19 19
Ciona_intestinalis_76   (Vase tunicate)   12 11
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   25 20
Adineta_vaga 39 39
Octopus_bimaculoides_280 9 9
Crassostrea_gigas_22   (Pacific oyster)   10 10
Lottia_gigantea_   (Owl limpet)   6 6
Helobdella_robusta_ 3 3
Capitella_sp._I_ 10 10
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3 3
Heliconius_melpomene_   (Postman butterfly)   2 2
Bombyx_mori_   (Domestic silkworm)   1 1
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2 2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2 2
Linepithema_humile_v1.1   (Argentine ant)   2 2
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2 2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2 2
Atta_cephalotes_v1.1 2 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2 2
Lucilia_cuprina   (Australian sheep blowfly)   3 3
Drosophila_grimshawi_1.3 4 4
Drosophila_willistoni_1.3 4 4
Drosophila_pseudoobscura_2.13 4 4
Drosophila_persimilis_1.3 3 3
Drosophila_suzukii 4 4
Drosophila_yakuba_1.3 4 4
Drosophila_simulans_1.3 3 3
Drosophila_sechellia_1.3 4 4
Drosophila_melanogaster_76_5   (Fruit fly)   12 12
Drosophila_erecta_1.3 4 4
Drosophila_ananassae_1.3 4 4
Drosophila_virilis_1.2 3 3
Drosophila_mojavensis_1.3 4 4
Megaselia_scalaris_22 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   5 5
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   4 4
Anopheles_darlingi_22   (American malaria mosquito)   3 3
Anopheles_gambiae_49_3j   (African malaria mosquito)   2 2
Tribolium_castaneum_3.0   (Red flour beetle)   3 3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5 5
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Rhodnius_prolixus_22 1 1
Daphnia_pulex_   (Common water flea)   5 5
Strigamia_maritima_22 8 8
Sarcoptes_scabiei 2 2
Tetranychus_urticae_   (Two-spotted spider mite)   3 3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   13 13
Pristionchus_pacificus_ 5 5
Meloidogyne_incognita_   (Southern root-knot nematode)   4 4
Meloidogyne_hapla_ 3 3
Onchocerca_volvulus_22 3 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   3 3
Caenorhabditis_japonica_ 4 4
Caenorhabditis_brenneri_ 6 6
Caenorhabditis_remanei_ 3 3
Caenorhabditis_elegans_76_235   (Roundworm)   6 6
Caenorhabditis_briggsae_2 4 4
Trichinella_spiralis_22 1 1
Hymenolepis_microstoma_ 3 3
Echinococcus_multilocularis_ 2 2
Echinococcus_granulosus_ 2 2
Taenia_solium_   (Pork tapeworm)   3 3
Schistosoma_mansoni_ 5 5
Mnemiopsis_leidyi   (Sea walnut)   4 4
Thelohanellus_kitauei 1 1
Acropora_digitifera_v1.0 12 12
Nematostella_vectensis_1.0   (Starlet sea anemone)   18 18
Hydra_vulgaris 10 10
Amphimedon_queenslandica 3 3
Trichoplax_adhaerens_ 8 8
Proterospongia_sp._ATCC_50818_ 5 5
Monosiga_brevicollis_ 5 5
Sphaeroforma_arctica_JP610_ 4 4
Capsaspora_owczarzaki_ATCC_30864_ 6 6
Conidiobolus_coronatus_NRRL28638_v1.0 5 5
Mortierella_verticillata_NRRL_6337_ 16 16
Phycomyces_blakesleeanus_ 17 17
Rhizopus_oryzae_RA_99-880_ 16 16
Mucor_circinelloides_ 17 17
Rhizomucor_miehei_CAU432_ 11 11
Malassezia_globosa_CBS_7966_ 4 4
Sporisorium_reilianum_22 4 4
Ustilago_maydis_ 4 4
Mixia_osmundae_IAM_14324_v1.0 3 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 5 5
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 8 8
Melampsora_laricis-populina_ 5 5
Rhodotorula_graminis_WP1_v1.0 4 4
Sporobolomyces_roseus_IAM_13481_ 2 2
Microbotryum_violaceum_22 9 9
Sphaerobolus_stellatus_v1.0 5 5
Piloderma_croceum_F_1598_v1.0 5 5
Serpula_lacrymans_var._lacrymans_S7.9_ 4 4
Coniophora_puteana 4 4
Hydnomerulius_pinastri_v2.0 4 4
Paxillus_rubicundulus_Ve08.2h10_v1.0 4 4
Pisolithus_microcarpus_441_v1.0 4 4
Pisolithus_tinctorius_Marx_270_v1.0 4 4
Scleroderma_citrinum_Foug_A_v1.0 4 4
Coprinopsis_cinerea_okayama7_130_v3 8 8
Pleurotus_ostreatus_   (Oyster mushroom)   8 8
Amanita_thiersii_Skay4041_v1.0 9 9
Amanita_muscaria_Koide_v1.0   (Fly agaric)   6 6
Galerina_marginata_v1.0 6 6
Hebeloma_cylindrosporum_h7_v2.0 5 5
Laccaria_bicolor_S238N-H82_ 3 3
Agaricus_bisporus_var._bisporus_ 5 5
Schizophyllum_commune_ 3 3
Stereum_hirsutum_FP-91666_SS1__v1.0 5 5
Heterobasidion_annosum_ 4 4
Gloeophyllum_trabeumv1.0 5 5
Punctularia_strigosozonata_v1.0 6 6
Sebacina_vermifera_MAFF_305830_v1.0 5 5
Fomitiporia_mediterranea_v1.0 4 4
Tulasnella_calospora_AL13/4D_v1.0 10 10
Postia_placenta_ 5 5
Wolfiporia_cocos_MD-104_SS10__v1.0 4 4
Fomitopsis_pinicolav1.0 4 4
Fomitopsis_pinicola_FP-58527_SS1_v3.0 4 4
Phanerochaete_chrysosporium_RP-78_2.1 4 4
Dichomitus_squalens 6 6
Trametes_versicolor_v1.0 6 6
Tremella_mesenterica_   (Witches' butter)   3 3
Daldinia_eschscholzii_EC12_v1.0 9 9
Apiospora_montagnei_NRRL_25634_v1.0 8 8
Magnaporthe_poae_ATCC_64411_22 14 14
Magnaporthe_grisea_70-15_ 16 16
Podospora_anserina_ 9 9
Sporotrichum_thermophile_ATCC_42464_ 6 6
Thielavia_terrestris_NRRL_8126_ 4 4
Chaetomium_globosum_CBS_148.51_ 6 6
Neurospora_tetrasperma_ 5 5
Neurospora_discreta_FGSC_8579_ 5 5
Neurospora_crassa_OR74A_ 5 5
Cryphonectria_parasitica_   (Chestnut blight fungus)   6 6
Verticillium_albo-atrum_VaMs.102_ 12 12
Verticillium_dahliae_VdLs.17_ 14 14
Acremonium_alcalophilumv_1.0 9 9
Glomerella_graminicola_22 12 12
Fusarium_graminearum_ 13 13
Nectria_haematococca_mpVI_ 11 11
Fusarium_oxysporum_f._sp._lycopersici_4286_ 13 13
Fusarium_verticillioides_7600_ 12 12
Trichoderma_asperellum_CBS_433.97_v1.0 7 7
Trichoderma_atroviride_ 7 7
Trichoderma_citrinoviride_v1.0 6 6
Trichoderma_reesei_1.2 6 6
Trichoderma_virens_Gv29-8_ 6 6
Trichoderma_longibrachiatum_ATCC_18648_v1.0 6 6
Trichoderma_harzianum_CBS_226.95_v1.0 6 6
Amorphotheca_resinae_v1.0   (Creosote fungus)   4 4
Botrytis_cinerea_B05.10_ 4 4
Sclerotinia_sclerotiorum_ 4 4
Blumeria_graminis_22 3 3
Didymella_exigua_CBS_183.55_v1.0 9 9
Leptosphaeria_maculans_22 8 8
Setosphaeria_turcica_v1.0 12 12
Cochliobolus_miyabeanus_ATCC_44560_v1.0 12 12
Cochliobolus_victoriae_FI3_v1.0 13 13
Cochliobolus_carbonum_26-R-13_v1.0 13 13
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   11 11
Alternaria_brassicicola_ 10 10
Cochliobolus_lunatus_m118_v2.0 11 11
Pyrenophora_teres_f._teres_22 11 11
Pyrenophora_tritici-repentis_ 11 11
Stagonospora_nodorum_ 10 10
Mycosphaerella_graminicola_IPO323_ 7 7
Zasmidium_cellare_ATCC_36951_v1.0 5 5
Dothistroma_septosporum 5 5
Septoria_musiva_v1.0 7 7
Mycosphaerella_fijiensis_CIRAD86_ 7 7
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 5 5
Paracoccidioides_brasiliensis_Pb18_ 4 4
Coccidioides_posadasii_RMSCC_3488_ 5 5
Coccidioides_immitis_RS_ 5 5
Ajellomyces_dermatitidis_SLH14081_ 5 5
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 5 5
Microsporum_canis_CBS_113480_ 5 5
Trichophyton_equinum_CBS_127.97_ 5 5
Trichophyton_verrucosum_HKI_0517_ 5 5
Arthroderma_benhamiae_CBS_112371_ 5 5
Trichophyton_tonsurans_CBS_112818_ 5 5
Trichophyton_rubrum_CBS_118892_ 4 4
Uncinocarpus_reesii_1704_ 5 5
Aspergillus_zonatus_v1.0 4 4
Penicillium_chrysogenum_Wisconsin_54-1255_ 4 4
Penicillium_chrysogenum_v1.0 4 4
Aspergillus_acidus_v1.0 4 4
Aspergillus_fumigatus_Af293 5 5
Aspergillus_brasiliensis_v1.0 4 4
Aspergillus_nidulans_FGSC_A4_ 5 5
Aspergillus_sydowii_v1.0 5 5
Aspergillus_versicolor_v1.0 5 5
Aspergillus_glaucus 7 7
Aspergillus_carbonarius_ITEM_5010_ 4 4
Neosartorya_fischeri_NRRL_181_ 5 5
Aspergillus_terreus_NIH2624_ 6 6
Aspergillus_tubingensis_v1.0 4 4
Aspergillus_wentii_v1.0 8 8
Aspergillus_oryzae_RIB40_ 8 8
Aspergillus_niger_22 4 4
Aspergillus_niger_ATCC_1015_ 3 3
Aspergillus_flavus_NRRL3357_ 8 8
Aspergillus_clavatus_NRRL_1_ 5 5
Penicillium_marneffei_ATCC_18224_ 3 3
Tuber_melanosporum_Mel28_22 5 5
Tuber_melanosporum_Vittad_   (Perigord truffle)   5 5
Hansenula_polymorpha_v2.0 4 4
Dekkera_bruxellensis_CBS_2499_v2.0 4 4
Pichia_membranifaciensv1.0 4 4
Candida_tanzawaensis_NRRL_Y-17324__v1.0 4 4
Candida_dubliniensis_CD36_ 4 4
Candida_tropicalis_MYA-3404_ 3 3
Candida_parapsilosis_ 4 4
Candida_albicans_SC5314 4 4
Lodderomyces_elongisporus_NRRL_YB-4239_ 3 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 4 4
Pichia_stipitis_CBS_6054_ 4 4
Candida_guilliermondii_ATCC_6260_ 4 4
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 5 5
Debaromyces_hansenii 4 4
Wickerhamomyces_anomalus 4 4
Pichia_pastoris_GS115_ 4 4
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 3 3
Yarrowia_lipolytica_CLIB122 4 4
Candida_lusitaniae_ATCC_42720_ 5 5
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 4 4
Vanderwaltozyma_polyspora_DSM_70294_ 5 5
Candida_glabrata_CBS138 4 4
Kluyveromyces_thermotolerans_CBS_6340 4 4
Lachancea_kluyveri_ 4 4
Kluyveromyces_waltii 4 4
Ashbya_gossypii_ATCC_10895_ 3 3
Zygosaccharomyces_rouxii_ 3 3
Saccharomyces_mikatae_MIT 4 4
Saccharomyces_paradoxus_MIT 4 4
Saccharomyces_cerevisiae_76   (Baker's yeast)   4 4
Saccharomyces_bayanus_MIT 4 4
Kluyveromyces_lactis 4 4
Schizosaccharomyces_cryophilus_OY26_22 2 2
Schizosaccharomyces_octosporus_yFS286_ 2 2
Schizosaccharomyces_japonicus_yFS275_ 1 1
Schizosaccharomyces_pombe   (Fission yeast)   2 2
Catenaria_anguillulae_PL171_v1.0 17 17
Allomyces_macrogynus_ATCC_38327_ 10 10
Spizellomyces_punctatus_DAOM_BR117_ 5 5
Selaginella_moellendorffii_ 33 33
Pinus_taeda   (Loblolly pine)   18 17
Picea_abies   (Norway spruce)   12 12
Eucalyptus_grandis_v201   (Rose gum)   48 48
Theobroma_cacao_B97-61/B2_v1   (Cacao)   18 18
Gossypium_raimondii_v221 73 73
Citrus_clementina_v165 34 34
Citrus_sinensis_v154   (Sweet orange)   52 52
Thellungiella_halophila_v173 24 24
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   27 27
Capsella_rubella_v183 22 22
Arabidopsis_lyrata_   (Lyrate rockcress)   23 23
Arabidopsis_thaliana_10   (Thale cress)   30 30
Carica_papaya_   (Papaya)   20 20
Medicago_truncatula_   (Barrel medic)   53 53
Phaseolus_vulgaris_v186   (French bean)   28 28
Glycine_max_v109   (Soybean)   57 57
Cucumis_sativus_v122   (Cucumber)   30 30
Fragaria_vesca_   (Wild strawberry)   16 16
Malus_domestica_v196   (Apple)   50 50
Prunus_persica_v139   (Peach)   21 21
Linum_usitatissimum_v200   (Flax)   62 61
Manihot_esculenta_v147   (Cassava)   35 35
Populus_trichocarpa_v156   (Black cottonwood)   36 36
Vitis_vinifera_   (Wine grape)   21 21
Mimulus_guttatus_v140   (Spotted monkey flower)   31 31
Solanum_lycopersicum_v.2.3   (Tomato)   34 34
Solanum_tuberosum_   (Potato)   45 45
Actinidia_chinensis_Hongyang_ 26 25
Aquilegia_coerulea_v195 34 34
Triticum_urartu_22 13 13
Triticum_aestivum_22   (Bread wheat)   50 50
Aegilops_tauschii_22 24 24
Brachypodium_distachyon_   (Stiff brome)   32 32
Oryza_barthii_22   (African wild rice)   37 36
Oryza_meridionalis_22 37 35
Oryza_glumaepatula_22 32 32
Oryza_glaberrima   (African rice)   23 23
Oryza_punctata_22 35 35
Oryza_nivara_22 40 40
Oryza_brachyantha_22   (Malo sina)   24 24
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   31 31
Oryza_sativa_v193   (Rice)   31 31
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   24 24
Panicum_virgatum_v202   (Switchgrass)   56 56
Setaria_italica_v164   (Foxtail millet)   44 44
Zea_mays_subsp._mays_   (Maize)   47 47
Zea_mays_v181   (Maize)   48 48
Sorghum_bicolor_   (Sorghum)   30 28
Musa_balbisiana   (Balbis banana)   36 36
Musa_acuminata_22   (Wild Malaysian banana)   26 26
Amborella_trichopoda_22 18 18
Physcomitrella_patens 22 22
Coccomyxa_subellipsoidea_sp._C-169_v2 5 5
Asterochloris_sp._Cgr/DA1pho_v1.0 3 3
Chlorella_variabilis_sp._NC64A_ 2 2
Chlorella_vulgaris_ 8 8
Volvox_carteri_f._nagariensis_ 7 7
Volvox_carteri_v199 7 7
Chlamydomonas_reinhardtii_4.0 2 2
Ostreococcus_sp._RCC809_ 3 3
Ostreococcus_lucimarinus_CCE9901_ 3 3
Ostreococcus_tauri_ 3 3
Bathycoccus_prasinos_ 5 5
Micromonas_sp._RCC299_ 6 6
Micromonas_pusilla_CCMP1545_v3.0 5 5
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Porphyridium_purpureum_02_2012 1 1
Thecamonas_trahens_ATCC_50062_ 5 5
Bigelowiella_natans_CCMP2755_22 9 9
Trypanosoma_vivax_ 1 1
Trypanosoma_congolense_2.4 2 2
Trypanosoma_brucei_gambiense_v4.1 1 1
Trypanosoma_brucei_TREU927_v4.1 1 1
Ectocarpus_siliculosus 12 12
Aureococcus_anophagefferens_ 2 2
Albugo_laibachii_22 12 11
Pythium_iwayamai_DAOM_BR242034_22 15 15
Pythium_arrhenomanes_ATCC_12531_22 14 14
Pythium_ultimum_v1.7-2 20 19
Pythium_aphanidermatum_DAOM_BR444_22 17 16
Pythium_irregulare_DAOM_BR486_22 18 16
Pythium_vexans_DAOM_BR484_22 20 18
Phytophthora_ramorum_1.1   (Sudden oak death agent)   22 20
Phytophthora_sojae_1.1 20 19
Phytophthora_infestans_T30-4_ 17 16
Phytophthora_capsici_ 18 17
Hyaloperonospora_arabidopsidis_22 4 4
Phaeodactylum_tricornutumCCAP_1055/1 3 3
Fragilariopsis_cylindrus 8 8
Thalassiosira_pseudonana_CCMP1335 5 5
Perkinsus_marinus_ATCC_50983_ 3 3
Paramecium_tetraurelia_ 9 9
Tetrahymena_thermophila_SB210_1_ 2 2
Ichthyophthirius_multifiliis_strain_G5_ 4 4
Neospora_caninum 1 1
Toxoplasma_gondii_VEG 1 1
Toxoplasma_gondii_ME49 1 1
Toxoplasma_gondii_GT1 1 1
Symbiodinium_minutum_clade_B1_v1.2 12 12
Guillardia_theta_CCMP2712_v1.0_ 20 20
Emiliania_huxleyi_CCMP1516_ 5 5
Thermobaculum_terrenum_ATCC_BAA-798 1 1
Gloeocapsa_sp._PCC_7428 1 1
Gloeobacter_violaceus_PCC_7421 4 4
Ilumatobacter_coccineus 1 1
Thermobispora_bispora_DSM_43833 1 1
Nakamurella_multipartita_DSM_44233 3 3
Modestobacter_marinus 1 1
Blastococcus_saxobsidens_DD2 1 1
Geodermatophilus_obscurus_DSM_43160 2 2
Frankia_alni_ACN14a 1 1
Thermobifida_fusca_YX 1 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 2 2
Thermomonospora_curvata_DSM_43183 1 1
Streptosporangium_roseum_DSM_43021 6 6
Streptomyces_coelicolor_A3(2) 2 2
Streptomyces_sp._PAMC26508 2 2
Streptomyces_flavogriseus_ATCC_33331 2 2
Streptomyces_sp._SirexAA-E 2 2
Streptomyces_griseus_subsp._griseus_NBRC_13350 2 2
Streptomyces_bingchenggensis_BCW-1 1 1
Streptomyces_scabiei_87.22 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 4 4
Actinosynnema_mirum_DSM_43827 1 1
Saccharomonospora_viridis_DSM_43017 2 2
Saccharopolyspora_erythraea_NRRL_2338 2 2
Amycolatopsis_mediterranei_U32 2 2
Kribbella_flavida_DSM_17836 3 3
Nocardioides_sp._JS614 1 1
Propionibacterium_propionicum_F0230a 2 2
Salinispora_arenicola_CNS-205 1 1
Salinispora_tropica_CNB-440 2 2
Verrucosispora_maris_AB-18-032 3 3
Actinoplanes_sp._SE50/110 1 1
Actinoplanes_missouriensis_431 2 2
Tsukamurella_paurometabola_DSM_20162 1 1
Gordonia_sp._KTR9 2 2
Gordonia_polyisoprenivorans_VH2 1 1
Gordonia_bronchialis_DSM_43247 1 1
Rhodococcus_jostii_RHA1 1 1
Rhodococcus_equi_103S 1 1
Rhodococcus_opacus_B4 1 1
Rhodococcus_erythropolis_PR4 1 1
Amycolicicoccus_subflavus_DQS3-9A1 1 1
Mycobacterium_massiliense_str._GO_06 2 2
Mycobacterium_abscessus_ATCC_19977 2 2
Mycobacterium_sp._JLS 2 2
Mycobacterium_intracellulare_ATCC_13950 2 2
Mycobacterium_avium_104 2 2
Mycobacterium_vanbaalenii_PYR-1 1 1
Mycobacterium_canettii_CIPT_140010059 1 1
Mycobacterium_africanum_GM041182 1 1
Mycobacterium_tuberculosis_KZN_1435 1 1
Mycobacterium_tuberculosis 1 1
Mycobacterium_bovis_BCG_str._Pasteur_1173P2 1 1
Mycobacterium_rhodesiae_NBB3 2 2
Mycobacterium_ulcerans_Agy99 1 1
Mycobacterium_gilvum_PYR-GCK 2 2
Mycobacterium_chubuense_NBB4 2 2
Mycobacterium_marinum_M 1 1
Mycobacterium_smegmatis_str._MC2_155 2 2
Beutenbergia_cavernae_DSM_12333 1 1
Microbacterium_testaceum_StLB037 1 1
Intrasporangium_calvum_DSM_43043 2 2
Brachybacterium_faecium_DSM_4810 1 1
Isoptericola_variabilis_225 2 2
Cellulomonas_flavigena_DSM_20109 1 1
Cellulomonas_fimi_ATCC_484 1 1
Micrococcus_luteus_NCTC_2665 1 1
Gardnerella_vaginalis_409-05 1 1
Arcanobacterium_haemolyticum_DSM_20595 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1 1
Anaerolinea_thermophila_UNI-1 1 1
Thermomicrobium_roseum_DSM_5159 1 1
Sphaerobacter_thermophilus_DSM_20745 6 6
Herpetosiphon_aurantiacus_DSM_785 2 2
Roseiflexus_sp._RS-1 1 1
Roseiflexus_castenholzii_DSM_13941 1 1
Chloroflexus_sp._MS-G 1 1
Chloroflexus_sp._Y-400-fl 2 2
Chloroflexus_aggregans_DSM_9485 1 1
Chloroflexus_aurantiacus_J-10-fl 2 2
Truepera_radiovictrix_DSM_17093 1 1
Deinococcus_gobiensis_I-0 1 1
Deinococcus_deserti_VCD115 1 1
Deinococcus_maricopensis_DSM_21211 1 1
Deinococcus_geothermalis_DSM_11300 1 1
Deinococcus_proteolyticus_MRP 1 1
Deinococcus_radiodurans_R1 1 1
Meiothermus_silvanus_DSM_9946 1 1
Meiothermus_ruber_DSM_1279 2 2
Finegoldia_magna_ATCC_29328 1 1
Natranaerobius_thermophilus_JW/NM-WN-LF 4 4
Clostridiales_genomosp._BVAB3_str._UPII9-5 2 2
Ruminococcus_sp. 1 1
Ruminococcus_albus_7 1 1
Clostridium_phytofermentans_ISDg 1 1
Clostridium_lentocellum_DSM_5427 1 1
[Ruminococcus]_torques 1 1
Roseburia_intestinalis 1 1
Butyrivibrio_proteoclasticus_B316 1 1
Butyrivibrio_fibrisolvens 1 1
Clostridium_novyi_NT 1 1
Clostridium_perfringens_ATCC_13124 1 1
Coprothermobacter_proteolyticus_DSM_5265 2 2
Thermoanaerobacter_tengcongensis_MB4 1 1
Thermoanaerobacter_pseudethanolicus_ATCC_33223 1 1
Thermoanaerobacter_sp._X514 1 1
Thermoanaerobacter_wiegelii_Rt8.B1 1 1
Thermoanaerobacter_brockii_subsp._finnii_Ako-1 1 1
Lactobacillus_casei_ATCC_334 1 1
Lactobacillus_kefiranofaciens_ZW3 1 1
Lactobacillus_rhamnosus_Lc_705 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_BAA-365 1 1
Streptococcus_sp._I-P16 1 1
Streptococcus_sp._I-G2 1 1
Streptococcus_intermedius_JTH08 1 1
Streptococcus_gallolyticus_UCN34 1 1
Streptococcus_pseudopneumoniae_IS7493 2 2
Streptococcus_equi_subsp._equi_4047 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 2 2
Streptococcus_infantarius_subsp._infantarius_CJ18 1 1
Streptococcus_mitis_B6 1 1
Streptococcus_parasanguinis_ATCC_15912 3 3
Streptococcus_pyogenes_str._Manfredo 2 2
Streptococcus_agalactiae_A909 2 2
Streptococcus_thermophilus_LMD-9 1 1
Streptococcus_suis_P1/7 2 2
Streptococcus_sanguinis_SK36 1 1
Streptococcus_oralis_Uo5 1 1
Streptococcus_gordonii_str._Challis_substr._CH1 3 3
Exiguobacterium_sp._MH3 1 1
Exiguobacterium_sp._AT1b 1 1
Exiguobacterium_sibiricum_255-15 1 1
Brevibacillus_brevis_NBRC_100599 3 3
Paenibacillus_terrae_HPL-003 2 2
Paenibacillus_mucilaginosus_3016 1 1
Paenibacillus_polymyxa_M1 1 1
Bacillus_selenitireducens_MLS10 1 1
Solibacillus_silvestris_StLB046 1 1
Lysinibacillus_sphaericus_C3-41 1 1
Oceanobacillus_iheyensis_HTE831 4 4
Halobacillus_halophilus_DSM_2266 3 3
Bacillus_sp._JS 2 2
Bacillus_sp._1NLA3E 1 1
Bacillus_amyloliquefaciens_FZB42 2 2
Bacillus_atrophaeus_1942 3 3
Bacillus_subtilis_subsp._subtilis_str._168 2 2
Bacillus_licheniformis_DSM_13_=_ATCC_14580 2 2
Bacillus_halodurans_C-125 3 3
Bacillus_weihenstephanensis_KBAB4 3 3
Bacillus_thuringiensis_str._Al_Hakam 4 4
Bacillus_cereus_03BB102 4 4
Bacillus_anthracis_str._A0248 2 2
Bacillus_pseudofirmus_OF4 3 3
Bacillus_clausii_KSM-K16 2 2
Bacillus_cellulosilyticus_DSM_2522 2 2
Bacillus_pumilus_SAFR-032 1 1
Bacillus_megaterium_DSM_319 3 3
Macrococcus_caseolyticus_JCSC5402 1 1
Gemmatimonas_aurantiaca_T-27 5 5
Melioribacter_roseus_P3M 2 2
Ignavibacterium_album_JCM_16511 2 2
Chloroherpeton_thalassium_ATCC_35110 1 1
Haliscomenobacter_hydrossis_DSM_1100 5 5
Saprospira_grandis_str._Lewin 2 2
Niastella_koreensis_GR20-10 2 2
Chitinophaga_pinensis_DSM_2588 2 2
Rhodothermus_marinus_DSM_4252 3 3
Flexibacter_litoralis_DSM_6794 1 1
Belliella_baltica_DSM_15883 2 2
Cyclobacterium_marinum_DSM_745 2 2
Marivirga_tractuosa_DSM_4126 2 2
Fibrella_aestuarina 5 5
Leadbetterella_byssophila_DSM_17132 2 2
Dyadobacter_fermentans_DSM_18053 3 3
Spirosoma_linguale_DSM_74 5 5
Runella_slithyformis_DSM_19594 5 5
Parabacteroides_distasonis_ATCC_8503 1 1
Bacteroides_sp._CF50 1 1
Bacteroides_vulgatus_ATCC_8482 1 1
Solitalea_canadensis_DSM_3403 2 2
Sphingobacterium_sp._21 3 3
Fluviicola_taffensis_DSM_16823 2 2
Owenweeksia_hongkongensis_DSM_17368 1 1
Krokinobacter_sp._4H-3-7-5 1 1
Lacinutrix_sp._5H-3-7-4 3 3
Maribacter_sp._HTCC2170 2 2
Robiginitalea_biformata_HTCC2501 3 3
Croceibacter_atlanticus_HTCC2559 4 4
Aequorivita_sublithincola_DSM_14238 3 3
Zobellia_galactanivorans 2 2
Muricauda_ruestringensis_DSM_13258 2 2
Cellulophaga_algicola_DSM_14237 1 1
Cellulophaga_lytica_DSM_7489 2 2
Flavobacteriaceae_bacterium_3519-10 1 1
Weeksella_virosa_DSM_16922 1 1
Flavobacterium_indicum_GPTSA100-9 1 1
Flavobacterium_branchiophilum_FL-15 1 1
Flavobacterium_columnare_ATCC_49512 2 2
Isosphaera_pallida_ATCC_43644 1 1
Planctomyces_brasiliensis_DSM_5305 1 1
Planctomyces_limnophilus_DSM_3776 1 1
Rhodopirellula_baltica_SH_1 2 2
Pirellula_staleyi_DSM_6068 1 1
Opitutus_terrae_PB90-1 1 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 1 1
Caldisericum_exile_AZM16c01 3 3
Candidatus_Chloracidobacterium_thermophilum_B 5 5
Candidatus_Solibacter_usitatus_Ellin6076 9 9
Granulicella_tundricola_MP5ACTX9 3 3
Granulicella_mallensis_MP5ACTX8 2 2
Candidatus_Koribacter_versatilis_Ellin345 6 6
Terriglobus_saanensis_SP1PR4 5 5
Terriglobus_roseus_DSM_18391 3 3
Acidobacterium_capsulatum_ATCC_51196 1 1
Candidatus_Nitrospira_defluvii 1 1
Sebaldella_termitidis_ATCC_33386 1 1
Bacteriovorax_marinus_SJ 1 1
Bdellovibrio_bacteriovorus_HD100 2 2
Syntrophobacter_fumaroxidans_MPOB 1 1
Desulfatibacillum_alkenivorans_AK-01 1 1
Desulfomicrobium_baculatum_DSM_4028 1 1
Desulfovibrio_piezophilus 1 1
Desulfovibrio_aespoeensis_Aspo-2 1 1
Desulfovibrio_alaskensis_G20 1 1
Desulfovibrio_salexigens_DSM_2638 1 1
Desulfovibrio_africanus_str._Walvis_Bay 1 1
Geobacter_lovleyi_SZ 1 1
Haliangium_ochraceum_DSM_14365 1 1
Sorangium_cellulosum_'So_ce_56' 3 3
Anaeromyxobacter_sp._Fw109-5 2 2
Anaeromyxobacter_dehalogenans_2CP-1 1 1
Stigmatella_aurantiaca_DW4/3-1 8 8
Corallococcus_coralloides_DSM_2259 5 5
Myxococcus_xanthus_DK_1622 4 4
Myxococcus_fulvus_HW-1 2 2
Rubrivivax_gelatinosus_IL144 1 1
Delftia_sp._Cs1-4 1 1
Parvularcula_bermudensis_HTCC2503 2 2
Asticcacaulis_excentricus_CB_48 2 2
Brevundimonas_subvibrioides_ATCC_15264 2 2
Caulobacter_sp._K31 2 2
Caulobacter_crescentus_NA1000 3 3
Caulobacter_segnis_ATCC_21756 2 2
Phenylobacterium_zucineum_HLK1 3 3
Erythrobacter_litoralis_HTCC2594 1 1
Sphingopyxis_alaskensis_RB2256 1 1
Novosphingobium_sp._PP1Y 1 1
Novosphingobium_aromaticivorans_DSM_12444 1 1
Sphingobium_sp._SYK-6 2 2
Sphingobium_japonicum_UT26S 3 3
Sphingobium_chlorophenolicum_L-1 3 3
Sphingomonas_sp._MM-1 3 3
Sphingomonas_wittichii_RW1 4 4
Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 1 1
Maricaulis_maris_MCS10 2 2
Hirschia_baltica_ATCC_49814 2 2
Hyphomonas_neptunium_ATCC_15444 2 2
Ketogulonicigenium_vulgare_Y25 1 1
Ketogulonigenium_vulgarum_WSH-001 1 1
Rhodospirillum_centenum_SW 2 2
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Gluconobacter_oxydans_621H 1 1
Vibrio_furnissii_NCTC_11218 1 1
Idiomarina_loihiensis_L2TR 1 1
Ferrimonas_balearica_DSM_9799 5 5
Shewanella_piezotolerans_WP3 4 4
Shewanella_loihica_PV-4 5 5
Shewanella_halifaxensis_HAW-EB4 1 1
Shewanella_sediminis_HAW-EB3 3 3
Shewanella_denitrificans_OS217 3 3
Shewanella_pealeana_ATCC_700345 2 2
Shewanella_oneidensis_MR-1 6 6
Shewanella_baltica_OS185 4 4
Shewanella_woodyi_ATCC_51908 3 3
Shewanella_sp._MR-4 5 5
Shewanella_amazonensis_SB2B 4 4
Shewanella_violacea_DSS12 2 2
Shewanella_frigidimarina_NCIMB_400 3 3
Shewanella_putrefaciens_CN-32 3 3
Colwellia_psychrerythraea_34H 4 4
Pseudoalteromonas_sp._SM9913 2 2
Pseudoalteromonas_atlantica_T6c 4 4
Pseudoalteromonas_haloplanktis_TAC125 3 3
Glaciecola_sp._4H-3-7+YE-5 4 4
Glaciecola_nitratireducens_FR1064 2 2
Alteromonas_sp._SN2 3 3
Alteromonas_macleodii_str._'Deep_ecotype' 3 3
Kangiella_koreensis_DSM_16069 1 1
Hahella_chejuensis_KCTC_2396 1 1
Rhodanobacter_denitrificans 2 2
Frateuria_aurantia_DSM_6220 1 1
Pseudoxanthomonas_suwonensis_11-1 1 1
Stenotrophomonas_maltophilia_K279a 4 4
Xylella_fastidiosa_M23 2 2
Xanthomonas_axonopodis_pv._citri_str._306 6 6
Xanthomonas_oryzae_pv._oryzae_PXO99A 3 3
Xanthomonas_campestris_pv._campestris_str._B100 4 4
Rahnella_sp._Y9602 1 1
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1 1
Pantoea_sp._At-9b 1 1
Pseudomonas_stutzeri_A1501 1 1
Pseudomonas_mendocina_ymp 1 1
Pseudomonas_aeruginosa_UCBPP-PA14 1 1
Candidatus_Nitrosopumilus_sp._AR2 1 1
Nitrosopumilus_maritimus_SCM1 1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 1 1
Thermogladius_cellulolyticus_1633 1 1
Ignisphaera_aggregans_DSM_17230 1 1
Thermofilum_sp._1910b 1 1
Thermofilum_pendens_Hrk_5 1 1
Thermoproteus_uzoniensis_768-20 1 1
Thermoproteus_tenax_Kra_1 1 1
halophilic_archaeon_DL31 4 4
Thermococcus_sp._4557 1 1
Thermococcus_barophilus_MP 1 1
Pyrococcus_horikoshii_OT3 1 1
Salinarchaeum_sp._Harcht-Bsk1 1 1
Halopiger_xanaduensis_SH-6 2 2
Haloterrigena_turkmenica_DSM_5511 2 2
Natrinema_sp._J7-2 1 1
Natrialba_magadii_ATCC_43099 5 5
Halorubrum_lacusprofundi_ATCC_49239 2 2
Haloquadratum_walsbyi_DSM_16790 1 1
Halogeometricum_borinquense_DSM_11551 2 2
Haloferax_mediterranei_ATCC_33500 2 2
Haloferax_volcanii_DS2 2 2
Halomicrobium_mukohataei_DSM_12286 1 1
Haloarcula_hispanica_ATCC_33960 1 1
Haloarcula_marismortui_ATCC_43049 1 1
Halalkalicoccus_jeotgali_B3 2 2
Halobacterium_salinarum_R1 2 2
Halobacterium_sp._NRC-1 2 2

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   19 19
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   10 10
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   2 2
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   4 4
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   6 6
Cryptococcus_neoformans_var._grubii_H99_ 4 4
Cryptococcus_neoformans_B-3501A_ 4 4
Cryptococcus_neoformans_JEC21_ 3 3
Paracoccidioides_brasiliensis_Pb01_ 3 3
Paracoccidioides_brasiliensis_Pb03_ 5 5
Coccidioides_posadasii_str._Silveira_ 5 5
Coccidioides_immitis_RMSCC_3703_ 4 4
Coccidioides_immitis_RMSCC_2394_ 5 5
Coccidioides_immitis_H538.4_ 5 5
Ajellomyces_dermatitidis_ER-3_ 5 5
Histoplasma_capsulatum_H143 4 4
Histoplasma_capsulatum_H88 5 5
Histoplasma_capsulatum_G186AR 5 5
Aspergillus_fumigatus_A1163_ 5 5
Candida_albicans_WO-1_ 4 4
Saccharomyces_cerevisiae_UC5 4 4
Saccharomyces_cerevisiae_PW5 4 4
Saccharomyces_cerevisiae_FL100 1 1
Saccharomyces_cerevisiae_CLIB324 1 1
Saccharomyces_cerevisiae_CBS7960 3 3
Saccharomyces_cerevisiae_YJM269 2 2
Saccharomyces_cerevisiae_T7 4 4
Saccharomyces_cerevisiae_FostersB 4 4
Saccharomyces_cerevisiae_FostersO 4 4
Saccharomyces_cerevisiae_VL3 4 4
Saccharomyces_cerevisiae_Vin13 4 4
Saccharomyces_cerevisiae_LalvinQA23 4 4
Saccharomyces_cerevisiae_AWRI796 4 4
Saccharomyces_cerevisiae_Sigma1278b 4 4
Saccharomyces_cerevisiae_W303 4 4
Saccharomyces_cerevisiae_JAY291 4 4
Saccharomyces_cerevisiae_AWRI1631 3 3
Saccharomyces_cerevisiae_YPS163 1 1
Saccharomyces_cerevisiae_M22 1 1
Saccharomyces_cerevisiae_T73 2 2
Saccharomyces_cerevisiae_CLIB215 3 3
Saccharomyces_cerevisiae_YJM789_ 4 4
Saccharomyces_cerevisiae_YJM789 4 4
Saccharomyces_cerevisiae_RM11-1a 4 4
Saccharomyces_cerevisiae_RM11-1a_ 3 3
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4 4
Schizosaccharomyces_pombe_972h-_ 2 2
Batrachochytrium_dendrobatidis_JEL423_ 4 4
Batrachochytrium_dendrobatidis_JAM81_ 3 3
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   19 19
Hordeum_vulgare_22   (Domesticated barley)   41 41
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   28 28
Trypanosoma_brucei_Lister_427_v4.1 1 1
Neospora_caninum_Nc-Liverpool_6.2 1 1
Chroococcidiopsis_thermalis_PCC_7203 1 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 3 3
Nocardiopsis_alba_ATCC_BAA-2165 2 2
Streptomyces_albus_J1074 1 1
Streptomyces_fulvissimus_DSM_40593 3 3
Streptomyces_venezuelae_ATCC_10712 2 2
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 3 3
Saccharothrix_espanaensis_DSM_44229 3 3
Amycolatopsis_mediterranei_RB 2 2
Amycolatopsis_mediterranei_S699 2 2
Amycolatopsis_mediterranei_S699 2 2
Amycolatopsis_orientalis_HCCB10007 1 1
Propionibacterium_avidum_44067 1 1
Rhodococcus_pyridinivorans_SB3094 2 2
Rhodococcus_erythropolis_CCM2595 1 1
Nocardia_brasiliensis_ATCC_700358 2 2
Mycobacterium_sp._MOTT36Y 2 2
Mycobacterium_sp._JDM601 1 1
Mycobacterium_abscessus_subsp._bolletii_50594 2 2
Mycobacterium_liflandii_128FXT 1 1
Mycobacterium_sp._KMS 2 2
Mycobacterium_sp._MCS 2 2
Mycobacterium_yongonense_05-1390 2 2
Mycobacterium_intracellulare_MOTT-64 2 2
Mycobacterium_indicus_pranii_MTCC_9506 2 2
Mycobacterium_intracellulare_MOTT-02 2 2
Mycobacterium_avium_subsp._paratuberculosis_MAP4 2 2
Mycobacterium_avium_subsp._paratuberculosis_K-10 2 2
Mycobacterium_canettii_CIPT_140070017 1 1
Mycobacterium_canettii_CIPT_140060008 1 1
Mycobacterium_canettii_CIPT_140070008 1 1
Mycobacterium_canettii_CIPT_140070010 1 1
Mycobacterium_tuberculosis_EAI5/NITR206 1 1
Mycobacterium_tuberculosis_EAI5 1 1
Mycobacterium_tuberculosis_CAS/NITR204 1 1
Mycobacterium_tuberculosis_str._Beijing/NITR203 1 1
Mycobacterium_tuberculosis_UT205 1 1
Mycobacterium_tuberculosis_CTRI-2 1 1
Mycobacterium_tuberculosis_str._Erdman_=_ATCC_35801 1 1
Mycobacterium_tuberculosis_KZN_605 1 1
Mycobacterium_tuberculosis_KZN_4207 1 1
Mycobacterium_tuberculosis_CCDC5180 1 1
Mycobacterium_tuberculosis_CCDC5079 1 1
Mycobacterium_tuberculosis_CCDC5079 1 1
Mycobacterium_tuberculosis_H37Ra 1 1
Mycobacterium_tuberculosis_str._Haarlem 1 1
Mycobacterium_tuberculosis_F11 1 1
Mycobacterium_tuberculosis_H37Rv 1 1
Mycobacterium_tuberculosis_CDC1551 1 1
Mycobacterium_bovis_AF2122/97 1 1
Mycobacterium_bovis_BCG_str._Korea_1168P 1 1
Mycobacterium_bovis_BCG_str._Mexico 1 1
Mycobacterium_bovis_BCG_str._Tokyo_172 1 1
Mycobacterium_gilvum_Spyr1 2 2
Mycobacterium_smegmatis_str._MC2_155 2 2
Mycobacterium_kansasii_ATCC_12478 1 1
Gardnerella_vaginalis_HMP9231 1 1
Gardnerella_vaginalis_ATCC_14019 1 1
Actinomyces_graevenitzii_C83_ 1 1
Actinomyces_odontolyticus_ATCC_17982 4 4
Chthonomonas_calidirosea_T49 1 1
Deinococcus_peraridilitoris_DSM_19664 4 4
Clostridium_acidurici_9a 1 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1 1
Coprococcus_catus_GD/7 1 1
Roseburia_intestinalis_XB6B4 1 1
Clostridium_perfringens_SM101 1 1
Clostridium_botulinum_BKT015925 1 1
Thermoanaerobacter_sp._X513 1 1
Carnobacterium_maltaromaticum_LMA28 1 1
Lactobacillus_paracasei_subsp._paracasei_8700:2 1 1
Lactobacillus_casei_LOCK919 1 1
Lactobacillus_casei_W56 1 1
Lactobacillus_casei_LC2W 1 1
Lactobacillus_casei_BD-II 1 1
Lactobacillus_casei_BL23 1 1
Lactobacillus_casei_str._Zhang 1 1
Lactobacillus_rhamnosus_LOCK908 1 1
Lactobacillus_rhamnosus_LOCK900 1 1
Lactobacillus_rhamnosus_ATCC_8530 1 1
Lactobacillus_rhamnosus_GG 1 1
Lactobacillus_rhamnosus_GG 1 1
Lactobacillus_johnsonii_NCC_533 1 1
Lactobacillus_helveticus_H10 1 1
Lactobacillus_helveticus_CNRZ32 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ND02 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_11842 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_2038 1 1
Lactococcus_lactis_subsp._cremoris_UC509.9 1 1
Lactococcus_lactis_subsp._cremoris_SK11 1 1
Streptococcus_intermedius_B196 1 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 1 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 1 1
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 2 2
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 2 2
Streptococcus_equi_subsp._zooepidemicus 2 2
Streptococcus_dysgalactiae_subsp._equisimilis_167 2 2
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 2 2
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 1 1
Streptococcus_iniae_SF1 3 3
Streptococcus_parasanguinis_FW213 3 3
Streptococcus_pyogenes_HSC5 2 2
Streptococcus_pyogenes_A20 2 2
Streptococcus_pyogenes_MGAS1882 2 2
Streptococcus_pyogenes_MGAS15252 2 2
Streptococcus_pyogenes_Alab49 2 2
Streptococcus_pyogenes_MGAS10750 2 2
Streptococcus_pyogenes_MGAS10270 2 2
Streptococcus_pyogenes_MGAS2096 2 2
Streptococcus_pyogenes_MGAS9429 2 2
Streptococcus_pyogenes_MGAS6180 2 2
Streptococcus_pyogenes_NZ131 2 2
Streptococcus_pyogenes_MGAS8232 2 2
Streptococcus_pyogenes_MGAS10394 2 2
Streptococcus_pyogenes_MGAS315 2 2
Streptococcus_pyogenes_SSI-1 2 2
Streptococcus_pyogenes_M1_476 2 2
Streptococcus_pyogenes_MGAS5005 2 2
Streptococcus_pyogenes_M1_GAS 2 2
Streptococcus_agalactiae_ILRI112 2 2
Streptococcus_agalactiae_ILRI005 2 2
Streptococcus_agalactiae_09mas018883 2 2
Streptococcus_agalactiae_2-22 1 1
Streptococcus_agalactiae_SA20-06 1 1
Streptococcus_agalactiae_NEM316 3 3
Streptococcus_agalactiae_2603V/R 2 2
Streptococcus_thermophilus_MN-ZLW-002 1 1
Streptococcus_thermophilus_JIM_8232 1 1
Streptococcus_suis_T15 2 2
Streptococcus_suis_TL13 2 2
Streptococcus_suis_SC070731 2 2
Streptococcus_suis_S735 2 2
Streptococcus_suis_ST3 2 2
Streptococcus_suis_D9 1 1
Streptococcus_suis_SS12 2 2
Streptococcus_suis_D12 2 2
Streptococcus_suis_ST1 1 1
Streptococcus_suis_A7 1 1
Streptococcus_suis_JS14 2 2
Streptococcus_suis_BM407 1 1
Streptococcus_suis_SC84 1 1
Streptococcus_suis_GZ1 2 2
Streptococcus_suis_98HAH33 2 2
Streptococcus_suis_05ZYH33 2 2
Exiguobacterium_antarcticum_B7 1 1
Paenibacillus_sp._Y412MC10 1 1
Paenibacillus_mucilaginosus_KNP414 1 1
Paenibacillus_mucilaginosus_K02 1 1
Paenibacillus_polymyxa_CR1 1 1
Paenibacillus_polymyxa_SC2 1 1
Paenibacillus_polymyxa_E681 1 1
Amphibacillus_xylanus_NBRC_15112 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 2 2
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 2 2
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 2 2
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 2 2
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 2 2
Bacillus_amyloliquefaciens_LFB112 2 2
Bacillus_amyloliquefaciens_CC178 2 2
Bacillus_amyloliquefaciens_Y2 1 1
Bacillus_amyloliquefaciens_IT-45 2 2
Bacillus_amyloliquefaciens_XH7 2 2
Bacillus_amyloliquefaciens_LL3 2 2
Bacillus_amyloliquefaciens_TA208 2 2
Bacillus_amyloliquefaciens_DSM_7 2 2
Bacillus_licheniformis_9945A 2 2
Bacillus_subtilis_PY79 2 2
Bacillus_subtilis_XF-1 2 2
Bacillus_subtilis_QB928 2 2
Bacillus_subtilis_BSn5 3 3
Bacillus_subtilis_subsp._subtilis_str._BAB-1 3 3
Bacillus_subtilis_subsp._subtilis_str._BSP1 2 2
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 2 2
Bacillus_subtilis_subsp._subtilis_6051-HGW 2 2
Bacillus_subtilis_subsp._spizizenii_TU-B-10 2 2
Bacillus_subtilis_subsp._spizizenii_str._W23 2 2
Bacillus_subtilis_subsp._natto_BEST195 2 2
Bacillus_licheniformis_DSM_13_=_ATCC_14580 2 2
Bacillus_infantis_NRRL_B-14911 4 4
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 1 1
Bacillus_toyonensis_BCT-7112 3 3
Bacillus_thuringiensis_HD-771 3 3
Bacillus_thuringiensis_HD-789 3 3
Bacillus_thuringiensis_MC28 4 4
Bacillus_thuringiensis_serovar_chinensis_CT-43 3 3
Bacillus_thuringiensis_YBT-1518 3 3
Bacillus_thuringiensis_Bt407 3 3
Bacillus_thuringiensis_serovar_konkukian_str._97-27 2 2
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 2 2
Bacillus_thuringiensis_BMB171 3 3
Bacillus_thuringiensis_serovar_finitimus_YBT-020 3 3
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 3 3
Bacillus_cereus_FRI-35 4 4
Bacillus_cereus_biovar_anthracis_str._CI 4 4
Bacillus_cereus_AH820 2 2
Bacillus_cereus_AH187 3 3
Bacillus_cereus_B4264 3 3
Bacillus_cereus_G9842 3 3
Bacillus_cereus_Q1 3 3
Bacillus_cereus_F837/76 4 4
Bacillus_cereus_NC7401 3 3
Bacillus_cereus_E33L 3 3
Bacillus_cereus_ATCC_14579 3 3
Bacillus_cereus_ATCC_10987 3 3
Bacillus_anthracis_str._H9401 2 2
Bacillus_anthracis_str._CDC_684 2 2
Bacillus_anthracis_str._'Ames_Ancestor' 2 2
Bacillus_anthracis_str._Sterne 2 2
Bacillus_anthracis_str._Ames 2 2
Bacillus_megaterium_WSH-002 3 3
Bacillus_megaterium_QM_B1551 3 3
Bacillus_coagulans_36D1 1 1
Rhodothermus_marinus_SG0.5JP17-172 3 3
Echinicola_vietnamensis_DSM_17526 1 1
Emticicia_oligotrophica_DSM_17448 4 4
Psychroflexus_torquis_ATCC_700755 2 2
Singulisphaera_acidiphila_DSM_18658 4 3
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 2 2
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 2 2
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1 1
Desulfovibrio_desulfuricans_ND132 1 1
Sorangium_cellulosum_So0157-2 3 3
Anaeromyxobacter_sp._K 2 2
Anaeromyxobacter_dehalogenans_2CP-C 2 2
Myxococcus_stipitatus_DSM_14675 10 10
Variovorax_paradoxus_EPS 1 1
Caulobacter_crescentus_CB15 3 3
Zymomonas_mobilis_subsp._mobilis_ATCC_29191 1 1
Zymomonas_mobilis_subsp._mobilis_CP4 1 1
Zymomonas_mobilis_subsp._mobilis_ATCC_10988 1 1
Zymomonas_mobilis_subsp._mobilis_ZM4 1 1
Zymomonas_mobilis_subsp._pomaceae_ATCC_29192 1 1
Gluconacetobacter_diazotrophicus_PAl_5 1 1
Gluconobacter_oxydans_H24 1 1
Sinorhizobium_fredii_USDA_257 1 1
Rhizobium_etli_bv._mimosae_str._Mim1 1 1
Simiduia_agarivorans_SA1_=_DSM_21679 3 3
Vibrio_sp._EJY3 1 1
Vibrio_nigripulchritudo_VibrioScope 1 1
Idiomarina_loihiensis_GSL_199 1 1
Shewanella_sp._W3-18-1 3 3
Shewanella_sp._ANA-3 6 6
Shewanella_baltica_BA175 4 4
Shewanella_baltica_OS678 4 4
Shewanella_baltica_OS117 4 4
Shewanella_baltica_OS223 4 4
Shewanella_baltica_OS195 4 4
Shewanella_baltica_OS155 4 4
Shewanella_sp._MR-7 4 4
Shewanella_putrefaciens_200 3 3
Glaciecola_psychrophila_170 2 2
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 4 4
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 3 3
Alteromonas_macleodii_str._'Ionian_Sea_U8' 3 3
Alteromonas_macleodii_str._'Ionian_Sea_U7' 3 3
Alteromonas_macleodii_str._'Ionian_Sea_U4' 3 3
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 3 3
Alteromonas_macleodii_str._'English_Channel_615' 2 2
Alteromonas_macleodii_AltDE1 3 3
Alteromonas_macleodii_str._'English_Channel_673' 3 3
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 4 4
Alteromonas_macleodii_str._'Black_Sea_11' 4 4
Alteromonas_macleodii_ATCC_27126 3 3
Stenotrophomonas_maltophilia_D457 4 4
Stenotrophomonas_maltophilia_JV3 4 4
Stenotrophomonas_maltophilia_R551-3 4 4
Xylella_fastidiosa_subsp._fastidiosa_GB514 2 2
Xylella_fastidiosa_M12 2 2
Xylella_fastidiosa_Temecula1 2 2
Xylella_fastidiosa_9a5c 2 2
Xanthomonas_citri_subsp._citri_Aw12879 5 5
Xanthomonas_campestris_pv._vesicatoria_str._85-10 4 4
Xanthomonas_axonopodis_pv._citrumelo_F1 4 4
Xanthomonas_axonopodis_Xac29-1 5 5
Xanthomonas_oryzae_pv._oryzicola_BLS256 3 3
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 3 3
Xanthomonas_oryzae_pv._oryzae_KACC_10331 3 3
Xanthomonas_campestris_pv._raphani_756C 4 4
Xanthomonas_campestris_pv._campestris_str._8004 4 4
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 4 4
Rahnella_aquatilis_HX2 1 1
Pseudomonas_stutzeri_CCUG_29243 1 1
Pseudomonas_stutzeri_DSM_4166 1 1
Pseudomonas_stutzeri_RCH2 1 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1 1
Pseudomonas_resinovorans_NBRC_106553 1 1
Pseudomonas_aeruginosa_SCV20265 1 1
Pseudomonas_aeruginosa_MTB-1 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_B136-33 1 1
Pseudomonas_aeruginosa_PA1R 1 1
Pseudomonas_aeruginosa_PA1 1 1
Pseudomonas_aeruginosa_DK2 1 1
Pseudomonas_aeruginosa_NCGM2.S1 1 1
Pseudomonas_aeruginosa_M18 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Pseudomonas_aeruginosa_PA7 1 1
Pseudomonas_aeruginosa_PAO1 1 1
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1 1
Thermococcus_litoralis_DSM_5473 1 1
Halovivax_ruber_XH-70 3 3
Natrinema_pellirubrum_DSM_15624 1 1
Natronococcus_occultus_SP4 2 2
Natronobacterium_gregoryi_SP2 1 1
Haloquadratum_walsbyi_C23 1 1
Haloarcula_hispanica_N601 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   19 19
Pan_troglodytes_69_2.1.4   (Chimpanzee)   16 16
Gorilla_gorilla_69_3.1   (Western gorilla)   17 17
Pongo_abelii_69_2   (Sumatran orangutan)   17 17
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   14 14
Macaca_mulatta_69_1   (Rhesus monkey)   15 15
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   17 17
Otolemur_garnettii_69_3   (Small-eared galago)   17 17
Microcebus_murinus_69_1   (Gray mouse lemur)   18 16
Rattus_norvegicus_69_3.4   (Norway rat)   15 15
Mus_musculus_69_38   (House mouse)   17 17
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   14 14
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   13 13
Cavia_porcellus_69_3   (Domestic guinea pig)   11 11
Oryctolagus_cuniculus_69_2   (Rabbit)   15 15
Ochotona_princeps_69   (American pika)   12 11
Tupaia_belangeri_69   (Northern tree shrew)   10 10
Sus_scrofa_69_10.2   (Pig)   16 16
Bos_taurus_69_3.1   (Cattle)   15 15
Vicugna_pacos_69_1   (Alpaca)   10 9
Tursiops_truncatus_69_1   (Bottlenose dolphin)   14 14
Mustela_putorius_furo_69_1.0   (Domestic ferret)   15 15
Ailuropoda_melanoleuca_69_1   (Giant panda)   18 18
Canis_familiaris_69_3.1   (Dog)   13 13
Felis_catus_69   (Domestic cat)   13 13
Equus_caballus_69_2   (Horse)   17 17
Myotis_lucifugus_69_2.0   (Little brown bat)   16 16
Pteropus_vampyrus_69_1   (Large flying fox)   18 17
Sorex_araneus_69_1   (European shrew)   7 7
Erinaceus_europaeus_69   (Western European hedgehog)   11 11
Procavia_capensis_69_1   (Cape rock hyrax)   14 13
Loxodonta_africana_69_3   (African savanna elephant)   13 13
Echinops_telfairi_69   (Small Madagascar hedgehog)   17 16
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   10 9
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   9 9
Macropus_eugenii_69_1.0   (Tammar wallaby)   17 16
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   15 15
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   17 17
Ornithorhynchus_anatinus_69_5   (Platypus)   12 12
Petromyzon_marinus_69_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_69_2   (Turkey)   11 11
Gallus_gallus_69_2   (Chicken)   13 13
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   13 13
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   14 14
Anolis_carolinensis_69_2.0   (Green anole)   12 12
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   13 13
Latimeria_chalumnae_69_1   (Coelacanth)   13 13
Gadus_morhua_69_1   (Atlantic cod)   13 13
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   14 14
Takifugu_rubripes_69_4   (Torafugu)   13 13
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   13 13
Oryzias_latipes_69_1   (Japanese medaka)   11 11
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   16 16
Oreochromis_niloticus_69_1.0   (Nile tilapia)   15 15
Danio_rerio_69_9   (Zebrafish)   18 18
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   12 12
Ciona_intestinalis_69   (Vase tunicate)   11 10
Drosophila_melanogaster_69_5   (Fruit fly)   4 4
Caenorhabditis_elegans_69_215   (Roundworm)   4 4
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4 4
Arabidopsis_thaliana_10   (Thale cress)   22 22

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   59 59
Homo_sapiens__(NCBI_version)   (Human)   27 27
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   17 17
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   3 3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3 3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
Moniliophthora_perniciosa_FA553__(Genome_survey) 3 3
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2 2
Lotus_japonicus__(Early_assembly) 22 22
Malus_x_domestica_(Duplicate)   (Apple)   50 50
Ricinus_communis__(Early_assembly)   (Castor bean)   23 23
Nicotiana_benthamiana_0.4.4_(Early_draft) 55 55
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   34 34
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   34 34
Phoenix_dactylifera__(Early_draft)   (Date palm)   5 5
Mycobacterium_tuberculosis_H37Rv_(Duplicate_of_ex) 1 1
NCBI_plasmid_sequences_(Plasmids) 15 15
Protein_Data_Bank_(all_PDB_sequenc) 117 117
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 223 223
Protozoadb_2010_08_(Protozoadb) 3 3
STRING_v9.0.5_(STRING) 1503 1493
Uniprot_2018_03_genome 27474 27401
NCBI_2017_08_genome 48251 48222
PDB_chains_(SCOP_1.75)_(PDB) 5 5
TargetDB__(Targets) 55 55

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