SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for RNI-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a RNI-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   493 450
Pan_troglodytes_76_2.1.4   (Chimpanzee)   118 112
Gorilla_gorilla_76_3.1   (Western gorilla)   162 147
Pongo_abelii_76_2   (Sumatran orangutan)   110 103
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   113 105
Papio_anubis_76   (Olive baboon)   114 108
Macaca_mulatta_76_1   (Rhesus monkey)   194 180
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   209 192
Otolemur_garnettii_76_3   (Small-eared galago)   114 103
Microcebus_murinus_76_1   (Gray mouse lemur)   96 89
Rattus_norvegicus_76_5.0   (Norway rat)   150 143
Mus_musculus_76_38   (House mouse)   340 327
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   98 91
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   131 119
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   99 95
Cavia_porcellus_76_3   (Domestic guinea pig)   100 91
Oryctolagus_cuniculus_76_2   (Rabbit)   101 92
Ochotona_princeps_76   (American pika)   88 79
Tupaia_belangeri_76   (Northern tree shrew)   64 59
Sus_scrofa_76_10.2   (Pig)   105 99
Bos_taurus_76_3.1   (Cattle)   129 119
Ovis_aries_76_3.1   (Sheep)   118 107
Vicugna_pacos_76_1   (Alpaca)   57 49
Tursiops_truncatus_76_1   (Bottlenose dolphin)   87 81
Mustela_putorius_furo_76_1.0   (Domestic ferret)   100 90
Ailuropoda_melanoleuca_76_1   (Giant panda)   98 91
Canis_familiaris_76_3.1   (Dog)   128 117
Felis_catus_76_6.2   (Domestic cat)   102 90
Equus_caballus_76_2   (Horse)   118 104
Myotis_lucifugus_76_2.0   (Little brown bat)   141 131
Pteropus_vampyrus_76_1   (Large flying fox)   85 79
Sorex_araneus_76_1   (European shrew)   67 62
Erinaceus_europaeus_76   (Western European hedgehog)   76 71
Procavia_capensis_76_1   (Cape rock hyrax)   89 78
Loxodonta_africana_76_3   (African savanna elephant)   116 107
Echinops_telfairi_76   (Small Madagascar hedgehog)   92 87
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   115 102
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   42 41
Macropus_eugenii_76_1.0   (Tammar wallaby)   69 64
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   110 94
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   89 82
Ornithorhynchus_anatinus_76_5   (Platypus)   71 67
Saccoglossus_kowalevskii_v3.0 162 146
Petromyzon_marinus_76_7.0   (Sea lamprey)   42 41
Meleagris_gallopavo_76_2   (Turkey)   74 65
Gallus_gallus_76_4   (Chicken)   76 69
Anas_platyrhynchos_76_1.0   (Mallard)   69 64
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   69 65
Ficedula_albicollis_76_1.0   (Collared flycatcher)   81 76
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   89 85
Anolis_carolinensis_76_2.0   (Green anole)   86 81
Xenopus_laevis_   (African clawed frog)   79 79
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   95 90
Latimeria_chalumnae_76_1   (Coelacanth)   143 128
Lepisosteus_oculatus_76   (Spotted gar)   136 125
Gadus_morhua_76_1   (Atlantic cod)   87 82
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   126 114
Takifugu_rubripes_76_4   (Torafugu)   240 226
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   100 92
Oryzias_latipes_76_1   (Japanese medaka)   145 132
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   105 98
Poecilia_formosa_76   (Amazon molly)   177 167
Oreochromis_niloticus_76_1.0   (Nile tilapia)   413 393
Astyanax_mexicanus_76   (Mexican tetra)   272 225
Danio_rerio_76_9   (Zebrafish)   832 727
Oikopleura_dioica 25 24
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   36 34
Ciona_intestinalis_76   (Vase tunicate)   54 52
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   305 269
Adineta_vaga 612 528
Octopus_bimaculoides_280 76 74
Crassostrea_gigas_22   (Pacific oyster)   85 79
Lottia_gigantea_   (Owl limpet)   87 77
Helobdella_robusta_ 52 50
Capitella_sp._I_ 206 201
Danaus_plexippus_OGS1.0   (Monarch butterfly)   57 53
Heliconius_melpomene_   (Postman butterfly)   42 38
Bombyx_mori_   (Domestic silkworm)   39 39
Nasonia_vitripennis_   (Jewel wasp)   24 20
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   78 78
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   43 42
Linepithema_humile_v1.1   (Argentine ant)   40 38
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   48 46
Solenopsis_invicta_v.2.2.3   (Red fire ant)   45 42
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   40 38
Atta_cephalotes_v1.1 44 42
Camponotus_floridanus_v3.3   (Florida carpenter ant)   32 31
Lucilia_cuprina   (Australian sheep blowfly)   58 54
Drosophila_grimshawi_1.3 54 52
Drosophila_willistoni_1.3 56 54
Drosophila_pseudoobscura_2.13 69 65
Drosophila_persimilis_1.3 66 62
Drosophila_suzukii 66 60
Drosophila_yakuba_1.3 68 65
Drosophila_simulans_1.3 53 51
Drosophila_sechellia_1.3 54 54
Drosophila_melanogaster_76_5   (Fruit fly)   119 108
Drosophila_erecta_1.3 56 53
Drosophila_ananassae_1.3 62 59
Drosophila_virilis_1.2 57 55
Drosophila_mojavensis_1.3 50 48
Megaselia_scalaris_22 27 26
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   84 74
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   175 155
Anopheles_darlingi_22   (American malaria mosquito)   55 49
Anopheles_gambiae_49_3j   (African malaria mosquito)   55 49
Tribolium_castaneum_3.0   (Red flour beetle)   41 40
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   41 40
Acyrthosiphon_pisum_   (Pea aphid)   33 32
Rhodnius_prolixus_22 37 35
Daphnia_pulex_   (Common water flea)   145 124
Strigamia_maritima_22 72 68
Sarcoptes_scabiei 24 23
Tetranychus_urticae_   (Two-spotted spider mite)   242 238
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   118 95
Pristionchus_pacificus_ 23 22
Meloidogyne_incognita_   (Southern root-knot nematode)   30 28
Meloidogyne_hapla_ 15 15
Onchocerca_volvulus_22 42 40
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   39 37
Caenorhabditis_japonica_ 32 30
Caenorhabditis_brenneri_ 86 82
Caenorhabditis_remanei_ 89 84
Caenorhabditis_elegans_76_235   (Roundworm)   81 74
Caenorhabditis_briggsae_2 45 41
Trichinella_spiralis_22 20 20
Hymenolepis_microstoma_ 35 34
Echinococcus_multilocularis_ 32 30
Echinococcus_granulosus_ 32 29
Taenia_solium_   (Pork tapeworm)   33 32
Schistosoma_mansoni_ 34 31
Mnemiopsis_leidyi   (Sea walnut)   49 45
Thelohanellus_kitauei 8 8
Acropora_digitifera_v1.0 471 380
Nematostella_vectensis_1.0   (Starlet sea anemone)   165 142
Hydra_vulgaris 41 37
Amphimedon_queenslandica 293 282
Trichoplax_adhaerens_ 40 36
Proterospongia_sp._ATCC_50818_ 149 138
Monosiga_brevicollis_ 52 49
Sphaeroforma_arctica_JP610_ 35 34
Capsaspora_owczarzaki_ATCC_30864_ 244 210
Conidiobolus_coronatus_NRRL28638_v1.0 372 362
Mortierella_verticillata_NRRL_6337_ 820 561
Phycomyces_blakesleeanus_ 251 225
Rhizopus_oryzae_RA_99-880_ 54 50
Mucor_circinelloides_ 98 94
Rhizomucor_miehei_CAU432_ 77 74
Malassezia_globosa_CBS_7966_ 20 18
Sporisorium_reilianum_22 15 13
Ustilago_maydis_ 15 14
Mixia_osmundae_IAM_14324_v1.0 28 27
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 57 55
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 57 55
Melampsora_laricis-populina_ 130 129
Rhodotorula_graminis_WP1_v1.0 64 63
Sporobolomyces_roseus_IAM_13481_ 86 80
Microbotryum_violaceum_22 33 33
Wallemia_sebi_v1.0 16 14
Sphaerobolus_stellatus_v1.0 337 337
Piloderma_croceum_F_1598_v1.0 178 177
Serpula_lacrymans_var._lacrymans_S7.9_ 56 56
Coniophora_puteana 249 247
Hydnomerulius_pinastri_v2.0 137 134
Paxillus_rubicundulus_Ve08.2h10_v1.0 76 76
Pisolithus_microcarpus_441_v1.0 58 58
Pisolithus_tinctorius_Marx_270_v1.0 76 75
Scleroderma_citrinum_Foug_A_v1.0 92 91
Coprinopsis_cinerea_okayama7_130_v3 261 259
Pleurotus_ostreatus_   (Oyster mushroom)   167 166
Amanita_thiersii_Skay4041_v1.0 97 95
Amanita_muscaria_Koide_v1.0   (Fly agaric)   154 153
Galerina_marginata_v1.0 350 350
Hebeloma_cylindrosporum_h7_v2.0 302 301
Laccaria_bicolor_S238N-H82_ 231 229
Agaricus_bisporus_var._bisporus_ 122 120
Schizophyllum_commune_ 320 309
Stereum_hirsutum_FP-91666_SS1__v1.0 238 236
Heterobasidion_annosum_ 66 65
Gloeophyllum_trabeumv1.0 171 170
Punctularia_strigosozonata_v1.0 131 129
Sebacina_vermifera_MAFF_305830_v1.0 250 247
Fomitiporia_mediterranea_v1.0 105 103
Tulasnella_calospora_AL13/4D_v1.0 408 402
Postia_placenta_ 235 234
Wolfiporia_cocos_MD-104_SS10__v1.0 109 106
Fomitopsis_pinicolav1.0 171 169
Fomitopsis_pinicola_FP-58527_SS1_v3.0 167 166
Phanerochaete_chrysosporium_RP-78_2.1 109 108
Dichomitus_squalens 123 121
Trametes_versicolor_v1.0 295 292
Tremella_mesenterica_   (Witches' butter)   14 14
Daldinia_eschscholzii_EC12_v1.0 24 24
Apiospora_montagnei_NRRL_25634_v1.0 30 29
Magnaporthe_poae_ATCC_64411_22 14 13
Magnaporthe_grisea_70-15_ 20 20
Podospora_anserina_ 20 20
Sporotrichum_thermophile_ATCC_42464_ 21 19
Thielavia_terrestris_NRRL_8126_ 20 19
Chaetomium_globosum_CBS_148.51_ 22 21
Neurospora_tetrasperma_ 20 19
Neurospora_discreta_FGSC_8579_ 17 17
Neurospora_crassa_OR74A_ 18 18
Cryphonectria_parasitica_   (Chestnut blight fungus)   21 21
Verticillium_albo-atrum_VaMs.102_ 11 11
Verticillium_dahliae_VdLs.17_ 16 16
Acremonium_alcalophilumv_1.0 11 11
Glomerella_graminicola_22 21 21
Fusarium_graminearum_ 25 25
Nectria_haematococca_mpVI_ 31 31
Fusarium_oxysporum_f._sp._lycopersici_4286_ 24 24
Fusarium_verticillioides_7600_ 26 26
Trichoderma_asperellum_CBS_433.97_v1.0 20 20
Trichoderma_atroviride_ 20 19
Trichoderma_citrinoviride_v1.0 18 18
Trichoderma_reesei_1.2 20 20
Trichoderma_virens_Gv29-8_ 22 21
Trichoderma_longibrachiatum_ATCC_18648_v1.0 19 19
Trichoderma_harzianum_CBS_226.95_v1.0 21 21
Amorphotheca_resinae_v1.0   (Creosote fungus)   26 25
Botrytis_cinerea_B05.10_ 22 22
Sclerotinia_sclerotiorum_ 20 20
Blumeria_graminis_22 15 15
Didymella_exigua_CBS_183.55_v1.0 29 29
Leptosphaeria_maculans_22 21 21
Setosphaeria_turcica_v1.0 28 28
Cochliobolus_miyabeanus_ATCC_44560_v1.0 25 25
Cochliobolus_victoriae_FI3_v1.0 30 30
Cochliobolus_carbonum_26-R-13_v1.0 29 29
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   20 20
Alternaria_brassicicola_ 22 22
Cochliobolus_lunatus_m118_v2.0 33 33
Pyrenophora_teres_f._teres_22 34 34
Pyrenophora_tritici-repentis_ 37 37
Stagonospora_nodorum_ 44 44
Mycosphaerella_graminicola_IPO323_ 24 23
Zasmidium_cellare_ATCC_36951_v1.0 43 43
Dothistroma_septosporum 30 30
Septoria_musiva_v1.0 22 22
Mycosphaerella_fijiensis_CIRAD86_ 20 20
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 43 43
Paracoccidioides_brasiliensis_Pb18_ 16 16
Coccidioides_posadasii_RMSCC_3488_ 17 17
Coccidioides_immitis_RS_ 16 16
Ajellomyces_dermatitidis_SLH14081_ 20 19
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 19 19
Microsporum_canis_CBS_113480_ 20 20
Trichophyton_equinum_CBS_127.97_ 20 20
Trichophyton_verrucosum_HKI_0517_ 22 22
Arthroderma_benhamiae_CBS_112371_ 22 22
Trichophyton_tonsurans_CBS_112818_ 20 20
Trichophyton_rubrum_CBS_118892_ 20 20
Uncinocarpus_reesii_1704_ 17 17
Aspergillus_zonatus_v1.0 20 20
Penicillium_chrysogenum_Wisconsin_54-1255_ 31 31
Penicillium_chrysogenum_v1.0 29 29
Aspergillus_acidus_v1.0 40 40
Aspergillus_fumigatus_Af293 23 23
Aspergillus_brasiliensis_v1.0 45 45
Aspergillus_nidulans_FGSC_A4_ 28 28
Aspergillus_sydowii_v1.0 36 36
Aspergillus_versicolor_v1.0 39 39
Aspergillus_glaucus 32 32
Aspergillus_carbonarius_ITEM_5010_ 32 32
Neosartorya_fischeri_NRRL_181_ 26 26
Aspergillus_terreus_NIH2624_ 29 29
Aspergillus_tubingensis_v1.0 42 42
Aspergillus_wentii_v1.0 50 49
Aspergillus_oryzae_RIB40_ 27 27
Aspergillus_niger_22 38 37
Aspergillus_niger_ATCC_1015_ 29 28
Aspergillus_flavus_NRRL3357_ 29 29
Aspergillus_clavatus_NRRL_1_ 23 23
Penicillium_marneffei_ATCC_18224_ 33 33
Tuber_melanosporum_Mel28_22 22 22
Tuber_melanosporum_Vittad_   (Perigord truffle)   23 23
Hansenula_polymorpha_v2.0 13 13
Dekkera_bruxellensis_CBS_2499_v2.0 14 14
Pichia_membranifaciensv1.0 13 13
Candida_tanzawaensis_NRRL_Y-17324__v1.0 17 17
Candida_dubliniensis_CD36_ 18 18
Candida_tropicalis_MYA-3404_ 37 35
Candida_parapsilosis_ 20 18
Candida_albicans_SC5314 31 31
Lodderomyces_elongisporus_NRRL_YB-4239_ 18 17
Babjeviella_inositovora_NRRL_Y-12698_v1.0 20 20
Pichia_stipitis_CBS_6054_ 19 18
Candida_guilliermondii_ATCC_6260_ 20 20
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 17 17
Debaromyces_hansenii 15 15
Wickerhamomyces_anomalus 26 26
Pichia_pastoris_GS115_ 12 12
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 12 10
Yarrowia_lipolytica_CLIB122 12 12
Candida_lusitaniae_ATCC_42720_ 14 13
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 15 14
Vanderwaltozyma_polyspora_DSM_70294_ 11 11
Candida_glabrata_CBS138 10 10
Kluyveromyces_thermotolerans_CBS_6340 12 12
Lachancea_kluyveri_ 17 17
Kluyveromyces_waltii 12 12
Ashbya_gossypii_ATCC_10895_ 13 12
Zygosaccharomyces_rouxii_ 11 11
Saccharomyces_mikatae_MIT 11 11
Saccharomyces_paradoxus_MIT 13 11
Saccharomyces_cerevisiae_76   (Baker's yeast)   13 12
Saccharomyces_bayanus_MIT 11 11
Kluyveromyces_lactis 12 12
Schizosaccharomyces_cryophilus_OY26_22 6 6
Schizosaccharomyces_octosporus_yFS286_ 8 7
Schizosaccharomyces_japonicus_yFS275_ 6 5
Schizosaccharomyces_pombe   (Fission yeast)   7 6
Catenaria_anguillulae_PL171_v1.0 54 53
Allomyces_macrogynus_ATCC_38327_ 221 214
Spizellomyces_punctatus_DAOM_BR117_ 67 60
Dictyostelium_discoideum 123 100
Dictyostelium_purpureum_ 133 103
Entamoeba_dispar_1.2 26 21
Entamoeba_invadens_1.2 50 45
Entamoeba_histolytica_1 28 22
Selaginella_moellendorffii_ 274 237
Pinus_taeda   (Loblolly pine)   414 360
Picea_abies   (Norway spruce)   233 212
Eucalyptus_grandis_v201   (Rose gum)   833 708
Theobroma_cacao_B97-61/B2_v1   (Cacao)   453 367
Gossypium_raimondii_v221 769 617
Citrus_clementina_v165 631 550
Citrus_sinensis_v154   (Sweet orange)   659 588
Thellungiella_halophila_v173 384 359
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   388 348
Capsella_rubella_v183 432 403
Arabidopsis_lyrata_   (Lyrate rockcress)   292 260
Arabidopsis_thaliana_10   (Thale cress)   398 370
Carica_papaya_   (Papaya)   148 128
Medicago_truncatula_   (Barrel medic)   1336 1132
Phaseolus_vulgaris_v186   (French bean)   382 327
Glycine_max_v109   (Soybean)   601 506
Cucumis_sativus_v122   (Cucumber)   201 168
Fragaria_vesca_   (Wild strawberry)   502 459
Malus_domestica_v196   (Apple)   741 667
Prunus_persica_v139   (Peach)   334 298
Linum_usitatissimum_v200   (Flax)   426 358
Manihot_esculenta_v147   (Cassava)   348 286
Populus_trichocarpa_v156   (Black cottonwood)   499 437
Vitis_vinifera_   (Wine grape)   282 247
Mimulus_guttatus_v140   (Spotted monkey flower)   438 412
Solanum_lycopersicum_v.2.3   (Tomato)   318 281
Solanum_tuberosum_   (Potato)   641 582
Actinidia_chinensis_Hongyang_ 306 259
Aquilegia_coerulea_v195 470 431
Triticum_urartu_22 685 627
Triticum_aestivum_22   (Bread wheat)   1030 960
Aegilops_tauschii_22 876 819
Brachypodium_distachyon_   (Stiff brome)   441 407
Oryza_barthii_22   (African wild rice)   734 602
Oryza_meridionalis_22 625 527
Oryza_glumaepatula_22 794 666
Oryza_glaberrima   (African rice)   381 348
Oryza_punctata_22 611 517
Oryza_nivara_22 850 719
Oryza_brachyantha_22   (Malo sina)   307 273
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   726 668
Oryza_sativa_v193   (Rice)   717 660
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   337 299
Panicum_virgatum_v202   (Switchgrass)   1000 931
Setaria_italica_v164   (Foxtail millet)   540 496
Zea_mays_subsp._mays_   (Maize)   301 273
Zea_mays_v181   (Maize)   347 315
Sorghum_bicolor_   (Sorghum)   426 395
Musa_balbisiana   (Balbis banana)   296 249
Musa_acuminata_22   (Wild Malaysian banana)   231 200
Amborella_trichopoda_22 159 136
Physcomitrella_patens 154 131
Coccomyxa_subellipsoidea_sp._C-169_v2 45 41
Asterochloris_sp._Cgr/DA1pho_v1.0 24 22
Chlorella_variabilis_sp._NC64A_ 71 62
Chlorella_vulgaris_ 50 44
Volvox_carteri_f._nagariensis_ 116 102
Volvox_carteri_v199 99 88
Chlamydomonas_reinhardtii_4.0 110 96
Ostreococcus_sp._RCC809_ 15 13
Ostreococcus_lucimarinus_CCE9901_ 13 12
Ostreococcus_tauri_ 13 12
Bathycoccus_prasinos_ 13 12
Micromonas_sp._RCC299_ 30 25
Micromonas_pusilla_CCMP1545_v3.0 35 31
Cyanidioschyzon_merolae_strain_10D_22 10 8
Cyanidioschyzon_merolae 9 7
Porphyridium_purpureum_02_2012 15 13
Thecamonas_trahens_ATCC_50062_ 148 127
Bigelowiella_natans_CCMP2755_22 86 81
Giardia_lamblia_2.3 22 19
Cyanophora_paradoxa_ 257 254
Leishmania_mexicana_2.4 72 64
Leishmania_major_strain_Friedlin_ 76 66
Leishmania_infantum_JPCM5_2.4 69 63
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 65 60
Trypanosoma_vivax_ 95 82
Trypanosoma_cruzi_strain_CL_Brener 64 61
Trypanosoma_congolense_2.4 90 86
Trypanosoma_brucei_gambiense_v4.1 86 79
Trypanosoma_brucei_TREU927_v4.1 103 84
Ectocarpus_siliculosus 88 82
Aureococcus_anophagefferens_ 74 67
Albugo_laibachii_22 38 34
Pythium_iwayamai_DAOM_BR242034_22 138 121
Pythium_arrhenomanes_ATCC_12531_22 100 92
Pythium_ultimum_v1.7-2 97 86
Pythium_aphanidermatum_DAOM_BR444_22 89 77
Pythium_irregulare_DAOM_BR486_22 115 103
Pythium_vexans_DAOM_BR484_22 81 69
Phytophthora_ramorum_1.1   (Sudden oak death agent)   73 64
Phytophthora_sojae_1.1 80 72
Phytophthora_infestans_T30-4_ 90 82
Phytophthora_capsici_ 63 56
Hyaloperonospora_arabidopsidis_22 27 25
Phaeodactylum_tricornutumCCAP_1055/1 53 45
Fragilariopsis_cylindrus 211 198
Thalassiosira_pseudonana_CCMP1335 68 65
Perkinsus_marinus_ATCC_50983_ 45 45
Paramecium_tetraurelia_ 195 167
Tetrahymena_thermophila_SB210_1_ 1349 1033
Ichthyophthirius_multifiliis_strain_G5_ 46 39
Cryptosporidium_hominis 5 4
Cryptosporidium_muris 6 5
Cryptosporidium_parvum_Iowa_II 5 4
Neospora_caninum 16 15
Toxoplasma_gondii_VEG 14 13
Toxoplasma_gondii_ME49 17 15
Toxoplasma_gondii_GT1 16 14
Babesia_bovis_T2Bo_ 10 8
Theileria_parva__ 6 5
Theileria_annulata 5 5
Plasmodium_falciparum_3D7_ 12 10
Plasmodium_vivax_SaI-1_7.0 10 8
Plasmodium_knowlesi_strain_H_ 12 10
Plasmodium_yoelii_ssp._yoelii_1_ 11 10
Plasmodium_chabaudi_ 12 10
Plasmodium_berghei_ANKA_ 11 8
Symbiodinium_minutum_clade_B1_v1.2 385 342
Naegleria_gruberi_ 506 439
Trichomonas_vaginalis_ 189 180
Guillardia_theta_CCMP2712_v1.0_ 175 159
Emiliania_huxleyi_CCMP1516_ 410 375
Leptolyngbya_sp._PCC_7376 1 1
Acaryochloris_marina_MBIC11017 1 1
Rivularia_sp._PCC_7116 5 4
Nostoc_sp._PCC_7524 1 1
Catenulispora_acidiphila_DSM_44928 5 5
Thermobifida_fusca_YX 1 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 5 5
Streptosporangium_roseum_DSM_43021 6 6
Kitasatospora_setae_KM-6054 2 2
Streptomyces_sp._PAMC26508 3 3
Streptomyces_flavogriseus_ATCC_33331 3 3
Streptomyces_sp._SirexAA-E 2 2
Streptomyces_griseus_subsp._griseus_NBRC_13350 2 2
Streptomyces_bingchenggensis_BCW-1 3 3
Streptomyces_violaceusniger_Tu_4113 2 2
Streptomyces_avermitilis_MA-4680 1 1
Streptomyces_scabiei_87.22 1 1
Actinosynnema_mirum_DSM_43827 1 1
Pseudonocardia_dioxanivorans_CB1190 1 1
Amycolatopsis_mediterranei_U32 1 1
Actinoplanes_sp._SE50/110 3 3
Actinoplanes_missouriensis_431 1 1
Corynebacterium_glutamicum_R 1 1
Anaerolinea_thermophila_UNI-1 1 1
Herpetosiphon_aurantiacus_DSM_785 7 7
Deinococcus_maricopensis_DSM_21211 2 2
Natranaerobius_thermophilus_JW/NM-WN-LF 1 1
Clostridium_clariflavum_DSM_19732 2 2
Clostridium_thermocellum_ATCC_27405 1 1
Syntrophobotulus_glycolicus_DSM_8271 2 1
Clostridium_phytofermentans_ISDg 1 1
Clostridium_tetani_E88 1 1
Clostridium_botulinum_A_str._ATCC_3502 1 1
Enterococcus_hirae_ATCC_9790 3 3
Lactobacillus_buchneri_NRRL_B-30929 1 1
Lactobacillus_buchneri 1 1
Lactobacillus_acidophilus_30SC 2 1
Lactococcus_garvieae_ATCC_49156 1 1
Paenibacillus_sp._JDR-2 1 1
Paenibacillus_terrae_HPL-003 1 1
Paenibacillus_mucilaginosus_3016 1 1
Paenibacillus_polymyxa_M1 1 1
Listeria_welshimeri_serovar_6b_str._SLCC5334 1 1
Listeria_innocua_Clip11262 1 1
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 2 2
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 3 3
Listeria_ivanovii_subsp._ivanovii_PAM_55 1 1
Bacillus_pumilus_SAFR-032 1 1
Haliscomenobacter_hydrossis_DSM_1100 6 6
Saprospira_grandis_str._Lewin 7 7
Niastella_koreensis_GR20-10 3 3
Flexibacter_litoralis_DSM_6794 3 3
Candidatus_Amoebophilus_asiaticus_5a2 30 27
Cyclobacterium_marinum_DSM_745 5 5
Marivirga_tractuosa_DSM_4126 1 1
Fibrella_aestuarina 2 2
Leadbetterella_byssophila_DSM_17132 1 1
Dyadobacter_fermentans_DSM_18053 3 3
Spirosoma_linguale_DSM_74 2 2
Runella_slithyformis_DSM_19594 4 4
Parabacteroides_distasonis_ATCC_8503 1 1
Prevotella_intermedia_17 1 1
Porphyromonas_asaccharolytica_DSM_20707 5 5
Bacteroides_salanitronis_DSM_18170 2 2
Bacteroides_thetaiotaomicron_VPI-5482 2 2
Bacteroides_fragilis_YCH46 2 2
Pedobacter_heparinus_DSM_2366 1 1
Fluviicola_taffensis_DSM_16823 1 1
Owenweeksia_hongkongensis_DSM_17368 1 1
Zunongwangia_profunda_SM-A87 1 1
Gramella_forsetii_KT0803 1 1
Maribacter_sp._HTCC2170 4 4
Zobellia_galactanivorans 4 4
Cellulophaga_algicola_DSM_14237 1 1
Cellulophaga_lytica_DSM_7489 4 4
Flavobacteriaceae_bacterium_3519-10 1 1
Polaribacter_sp._MED152 2 1
Capnocytophaga_canimorsus_Cc5 1 1
Capnocytophaga_ochracea_DSM_7271 1 1
Flavobacterium_indicum_GPTSA100-9 1 1
Flavobacterium_branchiophilum_FL-15 1 1
Flavobacterium_johnsoniae_UW101 1 1
Waddlia_chondrophila_WSU_86-1044 2 2
Candidatus_Protochlamydia_amoebophila_UWE25 90 61
Parachlamydia_acanthamoebae_UV-7 4 4
Simkania_negevensis_Z 4 4
Isosphaera_pallida_ATCC_43644 12 12
Planctomyces_brasiliensis_DSM_5305 10 9
Planctomyces_limnophilus_DSM_3776 3 2
Rhodopirellula_baltica_SH_1 12 11
Pirellula_staleyi_DSM_6068 14 12
Coraliomargarita_akajimensis_DSM_45221 2 2
Leptospira_interrogans_serovar_Lai_str._IPAV 6 6
Treponema_primitia_ZAS-2 1 1
Treponema_brennaborense_DSM_12168 2 2
Treponema_denticola_ATCC_35405 2 2
Candidatus_Solibacter_usitatus_Ellin6076 2 2
Sebaldella_termitidis_ATCC_33386 1 1
Ilyobacter_polytropus_DSM_2926 1 1
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 1 1
Geobacter_sp._M21 1 1
Geobacter_uraniireducens_Rf4 1 1
Geobacter_lovleyi_SZ 1 1
Geobacter_bemidjiensis_Bem 1 1
Geobacter_sulfurreducens_KN400 1 1
Geobacter_metallireducens_GS-15 1 1
Pelobacter_propionicus_DSM_2379 1 1
Haliangium_ochraceum_DSM_14365 2 2
Sorangium_cellulosum_'So_ce_56' 4 4
Stigmatella_aurantiaca_DW4/3-1 1 1
Corallococcus_coralloides_DSM_2259 3 2
Myxococcus_xanthus_DK_1622 5 4
Myxococcus_fulvus_HW-1 1 1
Burkholderia_rhizoxinica_HKI_454 2 1
Ralstonia_solanacearum_CFBP2957 12 6
Burkholderia_gladioli_BSR3 1 1
Acidovorax_citrulli_AAC00-1 1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1
Achromobacter_xylosoxidans 1 1
Methylovorus_sp._MP688 1 1
Candidatus_Puniceispirillum_marinum_IMCC1322 1 1
alpha_proteobacterium_HIMB5 1 1
Wolbachia_endosymbiont_of_Culex_quinquefasciatus_Pel 3 3
Orientia_tsutsugamushi_str._Boryong 1 1
Rickettsia_bellii_OSU_85-389 16 14
Rickettsia_philipii_str._364D 1 1
Rickettsia_heilongjiangensis_054 1 1
Rickettsia_peacockii_str._Rustic 3 2
Rickettsia_felis_URRWXCal2 5 4
Rickettsia_parkeri_str._Portsmouth 2 2
Rickettsia_massiliae_MTU5 1 1
Rickettsia_africae_ESF-5 1 1
Rickettsia_rhipicephali_str._3-7-female6-CWPP 3 3
Rickettsia_montanensis_str._OSU_85-930 5 4
Candidatus_Rickettsia_amblyommii_str._GAT-30V 5 5
Rickettsia_australis_str._Cutlack 1 1
Rickettsia_akari_str._Hartford 1 1
Rickettsia_rickettsii_str._'Sheila_Smith' 1 1
Rickettsia_conorii_str._Malish_7 2 2
Gallibacterium_anatis_UMN179 1 1
Vibrio_furnissii_NCTC_11218 1 1
Ferrimonas_balearica_DSM_9799 1 1
Pseudoalteromonas_atlantica_T6c 1 1
Glaciecola_sp._4H-3-7+YE-5 1 1
Marinomonas_mediterranea_MMB-1 1 1
Coxiella_burnetii_Dugway_5J108-111 1 1
Legionella_longbeachae_NSW150 9 9
Legionella_pneumophila_str._Corby 6 6
Pantoea_vagans_C9-1 1 1
Erwinia_sp._Ejp617 1 1
Erwinia_pyrifoliae_Ep1/96 1 1
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_C_strain_RKS4594 1 1
Escherichia_fergusonii_ATCC_35469 1 1
Pseudomonas_sp._TKP 1 1
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 3 2
Pseudomonas_syringae_pv._tomato_str._DC3000 2 2
Pseudomonas_sp._VLB120 1 1
Psychrobacter_sp._PRwf-1 1 1
Psychrobacter_cryohalolentis_K5 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   140 132
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   86 81
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   66 60
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   40 38
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   70 65
Cryptococcus_neoformans_var._grubii_H99_ 16 16
Cryptococcus_neoformans_B-3501A_ 15 15
Cryptococcus_neoformans_JEC21_ 14 14
Paracoccidioides_brasiliensis_Pb01_ 15 15
Paracoccidioides_brasiliensis_Pb03_ 16 16
Coccidioides_posadasii_str._Silveira_ 16 15
Coccidioides_immitis_RMSCC_3703_ 14 14
Coccidioides_immitis_RMSCC_2394_ 14 14
Coccidioides_immitis_H538.4_ 15 15
Ajellomyces_dermatitidis_ER-3_ 19 19
Histoplasma_capsulatum_H143 18 18
Histoplasma_capsulatum_H88 21 21
Histoplasma_capsulatum_G186AR 20 20
Aspergillus_fumigatus_A1163_ 27 27
Candida_albicans_WO-1_ 28 28
Saccharomyces_cerevisiae_UC5 11 10
Saccharomyces_cerevisiae_PW5 9 8
Saccharomyces_cerevisiae_FL100 5 5
Saccharomyces_cerevisiae_CLIB324 8 7
Saccharomyces_cerevisiae_CBS7960 11 10
Saccharomyces_cerevisiae_YJM269 10 10
Saccharomyces_cerevisiae_T7 11 11
Saccharomyces_cerevisiae_FostersB 9 9
Saccharomyces_cerevisiae_FostersO 11 11
Saccharomyces_cerevisiae_VL3 11 11
Saccharomyces_cerevisiae_Vin13 11 11
Saccharomyces_cerevisiae_LalvinQA23 8 8
Saccharomyces_cerevisiae_AWRI796 10 10
Saccharomyces_cerevisiae_Sigma1278b 14 12
Saccharomyces_cerevisiae_W303 13 12
Saccharomyces_cerevisiae_JAY291 12 11
Saccharomyces_cerevisiae_AWRI1631 9 8
Saccharomyces_cerevisiae_YPS163 4 4
Saccharomyces_cerevisiae_M22 3 3
Saccharomyces_cerevisiae_T73 3 3
Saccharomyces_cerevisiae_CLIB215 8 8
Saccharomyces_cerevisiae_Y10 3 3
Saccharomyces_cerevisiae_YJM789_ 13 11
Saccharomyces_cerevisiae_YJM789 12 11
Saccharomyces_cerevisiae_RM11-1a 11 11
Saccharomyces_cerevisiae_RM11-1a_ 11 11
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   14 12
Schizosaccharomyces_pombe_972h-_ 7 6
Batrachochytrium_dendrobatidis_JEL423_ 40 37
Batrachochytrium_dendrobatidis_JAM81_ 40 37
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   389 320
Hordeum_vulgare_22   (Domesticated barley)   900 801
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   708 645
Trypanosoma_brucei_Lister_427_v4.1 107 89
Neospora_caninum_Nc-Liverpool_6.2 16 15
Plasmodium_falciparum_HB3_ 9 8
Plasmodium_falciparum_Dd2_ 6 6
Chamaesiphon_minutus_PCC_6605 4 4
Oscillatoria_nigro-viridis_PCC_7112 1 1
Oscillatoria_acuminata_PCC_6304 1 1
Cyanothece_sp._PCC_7822 1 1
Cylindrospermum_stagnale_PCC_7417 1 1
Nocardiopsis_alba_ATCC_BAA-2165 3 3
Streptomyces_rapamycinicus_NRRL_5491 3 3
Streptomyces_fulvissimus_DSM_40593 2 2
Streptomyces_venezuelae_ATCC_10712 3 3
Streptomyces_collinus_Tu_365 1 1
Saccharothrix_espanaensis_DSM_44229 1 1
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Actinoplanes_friuliensis_DSM_7358 3 3
Corynebacterium_glutamicum_SCgG2 1 1
Corynebacterium_glutamicum_SCgG1 1 1
Clostridium_thermocellum_DSM_1313 1 1
Faecalibacterium_prausnitzii_L2-6 1 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1 1
Roseburia_intestinalis_XB6B4 1 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1 1
Clostridium_tetani_genome_12124569 1 1
Clostridium_botulinum_BKT015925 1 1
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_B1_str._Okra 1 1
Clostridium_botulinum_A_str._Hall 1 1
Clostridium_botulinum_A_str._ATCC_19397 1 1
Enterococcus_faecalis_V583 1 1
Lactobacillus_plantarum_16 1 1
Lactobacillus_plantarum_ZJ316 1 1
Lactobacillus_plantarum_subsp._plantarum_P-8 1 1
Lactobacillus_plantarum_WCFS1 2 2
Lactobacillus_acidophilus_La-14 2 1
Lactobacillus_acidophilus_NCFM 2 1
Lactococcus_garvieae_Lg2 1 1
Lactococcus_lactis_subsp._cremoris_KW2 1 1
Lactococcus_lactis_subsp._cremoris_UC509.9 1 1
Streptococcus_equi_subsp._zooepidemicus 1 1
Streptococcus_pneumoniae_AP200 1 1
Streptococcus_pneumoniae_D39 1 1
Streptococcus_pneumoniae_R6 1 1
Paenibacillus_mucilaginosus_KNP414 1 1
Paenibacillus_mucilaginosus_K02 1 1
Paenibacillus_polymyxa_CR1 1 1
Paenibacillus_polymyxa_SC2 1 1
Paenibacillus_polymyxa_E681 1 1
Listeria_monocytogenes_EGD_sequence 1 1
Listeria_monocytogenes_N53-1 2 2
Listeria_monocytogenes_La111 2 2
Listeria_monocytogenes_serotype_4b_str._LL195 2 2
Listeria_monocytogenes_07PF0776 2 2
Listeria_monocytogenes_M7 2 2
Listeria_monocytogenes_J1-220 1 1
Listeria_monocytogenes_J1816 2 2
Listeria_monocytogenes_SLCC5850 1 1
Listeria_monocytogenes_ATCC_19117 1 1
Listeria_monocytogenes_L312 3 3
Listeria_monocytogenes_SLCC2479 1 1
Listeria_monocytogenes_SLCC2378 2 2
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 2 2
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 1 1
Listeria_monocytogenes_serotype_7_str._SLCC2482 2 2
Listeria_monocytogenes_L99 2 2
Listeria_monocytogenes_HCC23 2 2
Listeria_monocytogenes_10403S 1 1
Listeria_monocytogenes_J0161 1 1
Listeria_monocytogenes_Finland_1998 1 1
Listeria_monocytogenes_FSL_R2-561 1 1
Listeria_monocytogenes_serotype_4b_str._F2365 1 1
Listeria_monocytogenes_EGD-e 1 1
Bacillus_toyonensis_BCT-7112 1 1
Bacillus_thuringiensis_BMB171 1 1
Echinicola_vietnamensis_DSM_17526 1 1
Emticicia_oligotrophica_DSM_17448 3 3
Prevotella_sp._oral_taxon_299_str._F0039 2 2
Bacteroides_xylanisolvens_XB1A 1 1
Bacteroides_fragilis_638R 2 2
Bacteroides_fragilis_NCTC_9343 2 2
Nonlabens_dokdonensis_DSW-6 1 1
Psychroflexus_torquis_ATCC_700755 1 1
Singulisphaera_acidiphila_DSM_18658 11 11
Leptospira_interrogans_serovar_Lai_str._56601 6 6
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 5 5
Geobacter_sp._M18 1 1
Geobacter_sulfurreducens_PCA 1 1
Sorangium_cellulosum_So0157-2 4 4
Myxococcus_stipitatus_DSM_14675 8 7
Pandoraea_pnomenusa_3kgm 1 1
Ralstonia_solanacearum_FQY_4 16 8
Ralstonia_solanacearum_Po82 12 6
Ralstonia_solanacearum_PSI07 14 8
Ralstonia_solanacearum_CMR15 13 7
Ralstonia_solanacearum_GMI1000 14 7
Octadecabacter_arcticus_238 1 1
Wolbachia_endosymbiont_strain_TRS_of_Brugia_malayi 1 1
Wolbachia_endosymbiont_of_Drosophila_simulans_wHa 2 2
Wolbachia_endosymbiont_of_Drosophila_simulans_wNo 2 2
Orientia_tsutsugamushi_str._Ikeda 1 1
Rickettsia_bellii_RML369-C 14 12
Rickettsia_massiliae_str._AZT80 1 1
Rickettsia_rickettsii_str._Brazil 1 1
Rickettsia_rickettsii_str._Colombia 1 1
Rickettsia_rickettsii__str._Hlp#2 1 1
Bradyrhizobium_oligotrophicum_S58 1 1
Shewanella_baltica_OS223 1 1
Alcanivorax_dieselolei_B5 1 1
Coxiella_burnetii_CbuK_Q154 1 1
Coxiella_burnetii_CbuG_Q212 1 1
Coxiella_burnetii_RSA_493 1 1
Legionella_pneumophila_str._Paris 7 7
Legionella_pneumophila_str._Lens 9 8
Legionella_pneumophila_subsp._pneumophila_LPE509 10 9
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 10 9
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 10 9
Legionella_pneumophila_subsp._pneumophila 8 8
Legionella_pneumophila_subsp._pneumophila 9 8
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 10 9
Legionella_pneumophila_2300/99_Alcoy 6 6
Erwinia_pyrifoliae_DSM_12163 1 1
Salmonella_enterica_subsp._enterica_serovar_4,[5],12:i:-_str._08-1736 1 1
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 1 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1 1
Salmonella_enterica_subsp._enterica_serovar_Choleraesuis_str._SC-B67 1 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_var._5-_str._CFSAN001921 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._U288 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._798 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._UK-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._T000240 1 1
Salmonella_enterica_The_genome_of__subsp._enterica_serovar_Typhimurium_str._DT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._D23580 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._14028S 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._LT2 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._P-stx-12 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty21a 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._Ty2 1 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1 1
Salmonella_enterica_subsp._enterica_serovar_Bareilly_str._CFSAN000189 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 1 1
Salmonella_enterica_subsp._enterica_serovar_Weltevreden_str._2007-60-3289-1 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._AKU_12601 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_A_str._ATCC_9150 1 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1 1
Escherichia_coli_O83:H1_str._NRG_857C 1 1
Escherichia_coli_LF82 1 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1 1
Pseudomonas_syringae_pv._syringae_B728a 2 2
Pseudomonas_putida_H8234 2 2
Pseudomonas_putida_GB-1 2 2
Pseudomonas_fluorescens_F113 3 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   149 139
Pan_troglodytes_69_2.1.4   (Chimpanzee)   113 107
Gorilla_gorilla_69_3.1   (Western gorilla)   117 107
Pongo_abelii_69_2   (Sumatran orangutan)   108 101
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   103 96
Macaca_mulatta_69_1   (Rhesus monkey)   109 101
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   108 98
Otolemur_garnettii_69_3   (Small-eared galago)   113 102
Microcebus_murinus_69_1   (Gray mouse lemur)   96 89
Rattus_norvegicus_69_3.4   (Norway rat)   135 128
Mus_musculus_69_38   (House mouse)   199 193
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   98 91
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   119 110
Cavia_porcellus_69_3   (Domestic guinea pig)   96 87
Oryctolagus_cuniculus_69_2   (Rabbit)   94 86
Ochotona_princeps_69   (American pika)   88 79
Tupaia_belangeri_69   (Northern tree shrew)   64 59
Sus_scrofa_69_10.2   (Pig)   92 87
Bos_taurus_69_3.1   (Cattle)   122 113
Vicugna_pacos_69_1   (Alpaca)   57 49
Tursiops_truncatus_69_1   (Bottlenose dolphin)   87 81
Mustela_putorius_furo_69_1.0   (Domestic ferret)   99 89
Ailuropoda_melanoleuca_69_1   (Giant panda)   95 88
Canis_familiaris_69_3.1   (Dog)   100 90
Felis_catus_69   (Domestic cat)   74 68
Equus_caballus_69_2   (Horse)   104 94
Myotis_lucifugus_69_2.0   (Little brown bat)   135 125
Pteropus_vampyrus_69_1   (Large flying fox)   85 79
Sorex_araneus_69_1   (European shrew)   67 62
Erinaceus_europaeus_69   (Western European hedgehog)   76 71
Procavia_capensis_69_1   (Cape rock hyrax)   89 78
Loxodonta_africana_69_3   (African savanna elephant)   95 87
Echinops_telfairi_69   (Small Madagascar hedgehog)   92 87
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   64 60
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   42 41
Macropus_eugenii_69_1.0   (Tammar wallaby)   69 64
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   93 82
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   87 80
Ornithorhynchus_anatinus_69_5   (Platypus)   66 62
Petromyzon_marinus_69_7.0   (Sea lamprey)   35 34
Meleagris_gallopavo_69_2   (Turkey)   62 56
Gallus_gallus_69_2   (Chicken)   64 61
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   64 60
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   80 76
Anolis_carolinensis_69_2.0   (Green anole)   80 75
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   77 74
Latimeria_chalumnae_69_1   (Coelacanth)   123 108
Gadus_morhua_69_1   (Atlantic cod)   78 73
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   108 99
Takifugu_rubripes_69_4   (Torafugu)   126 117
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   82 75
Oryzias_latipes_69_1   (Japanese medaka)   116 105
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   105 98
Oreochromis_niloticus_69_1.0   (Nile tilapia)   286 274
Danio_rerio_69_9   (Zebrafish)   499 452
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   29 27
Ciona_intestinalis_69   (Vase tunicate)   49 47
Drosophila_melanogaster_69_5   (Fruit fly)   55 52
Caenorhabditis_elegans_69_215   (Roundworm)   60 55
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   13 12
Arabidopsis_thaliana_10   (Thale cress)   332 305

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   574 535
Homo_sapiens__(NCBI_version)   (Human)   196 176
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   204 197
Heliconius_numata__(Incomplete) 6 6
Loa_loa_v3.3_(Request)   (Eye worm)   40 39
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   36 35
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   31 29
Moniliophthora_perniciosa_FA553__(Genome_survey) 50 50
Encephalitozoon_intestinalis__(endoparasite) 3 3
Encephalitozoon_cuniculi_(endoparasite) 4 4
Pinus_sylvestris__(Incomplete)   (Scots pine)   2 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   9 9
Lotus_japonicus__(Early_assembly) 314 300
Malus_x_domestica_(Duplicate)   (Apple)   741 667
Ricinus_communis__(Early_assembly)   (Castor bean)   220 187
Nicotiana_benthamiana_0.4.4_(Early_draft) 441 391
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   323 284
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   318 281
Phoenix_dactylifera__(Early_draft)   (Date palm)   106 97
Wolbachia_endosymbiont_of_Brugia_malayi_v1.0_(Broad_Institute) 1 1
NCBI_plasmid_sequences_(Plasmids) 75 41
PDB_chains_(SCOP_1.75)_(PDB) 12 9
TargetDB__(Targets) 395 373
Protein_Data_Bank_(all_PDB_sequenc) 323 238
Protozoadb_2010_08_(Protozoadb) 1201 1079
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 406 319
STRING_v9.0.5_(STRING) 12192 10971
NCBI_2017_08_genome 146360 131030
NCBI_viral_sequences_(Viral) 31 27
Uniprot_2018_03_genome 154498 140599
UniProt__viral_sequences_(Viral) 16 15

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]