SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Caspase-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Caspase-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   85 85
Pan_troglodytes_76_2.1.4   (Chimpanzee)   15 15
Gorilla_gorilla_76_3.1   (Western gorilla)   19 19
Pongo_abelii_76_2   (Sumatran orangutan)   15 15
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   16 15
Papio_anubis_76   (Olive baboon)   17 17
Macaca_mulatta_76_1   (Rhesus monkey)   34 34
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   34 34
Otolemur_garnettii_76_3   (Small-eared galago)   14 14
Microcebus_murinus_76_1   (Gray mouse lemur)   16 14
Rattus_norvegicus_76_5.0   (Norway rat)   15 15
Mus_musculus_76_38   (House mouse)   25 25
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   10 10
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   18 18
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   17 17
Cavia_porcellus_76_3   (Domestic guinea pig)   15 15
Oryctolagus_cuniculus_76_2   (Rabbit)   14 14
Ochotona_princeps_76   (American pika)   14 12
Tupaia_belangeri_76   (Northern tree shrew)   15 14
Sus_scrofa_76_10.2   (Pig)   17 17
Bos_taurus_76_3.1   (Cattle)   13 13
Ovis_aries_76_3.1   (Sheep)   18 17
Vicugna_pacos_76_1   (Alpaca)   11 10
Tursiops_truncatus_76_1   (Bottlenose dolphin)   15 13
Mustela_putorius_furo_76_1.0   (Domestic ferret)   12 12
Ailuropoda_melanoleuca_76_1   (Giant panda)   14 14
Canis_familiaris_76_3.1   (Dog)   24 23
Felis_catus_76_6.2   (Domestic cat)   16 16
Equus_caballus_76_2   (Horse)   18 17
Myotis_lucifugus_76_2.0   (Little brown bat)   24 24
Pteropus_vampyrus_76_1   (Large flying fox)   14 13
Sorex_araneus_76_1   (European shrew)   16 15
Erinaceus_europaeus_76   (Western European hedgehog)   15 13
Procavia_capensis_76_1   (Cape rock hyrax)   12 12
Loxodonta_africana_76_3   (African savanna elephant)   17 17
Echinops_telfairi_76   (Small Madagascar hedgehog)   19 13
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   17 16
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   12 12
Macropus_eugenii_76_1.0   (Tammar wallaby)   15 14
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   21 21
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   24 22
Ornithorhynchus_anatinus_76_5   (Platypus)   17 17
Saccoglossus_kowalevskii_v3.0 29 29
Petromyzon_marinus_76_7.0   (Sea lamprey)   11 11
Meleagris_gallopavo_76_2   (Turkey)   21 21
Gallus_gallus_76_4   (Chicken)   17 17
Anas_platyrhynchos_76_1.0   (Mallard)   15 15
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   14 14
Ficedula_albicollis_76_1.0   (Collared flycatcher)   15 15
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   20 20
Anolis_carolinensis_76_2.0   (Green anole)   10 10
Xenopus_laevis_   (African clawed frog)   50 50
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   14 14
Latimeria_chalumnae_76_1   (Coelacanth)   19 19
Lepisosteus_oculatus_76   (Spotted gar)   22 22
Gadus_morhua_76_1   (Atlantic cod)   43 42
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   15 15
Takifugu_rubripes_76_4   (Torafugu)   64 64
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   27 27
Oryzias_latipes_76_1   (Japanese medaka)   15 15
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   17 17
Poecilia_formosa_76   (Amazon molly)   19 17
Oreochromis_niloticus_76_1.0   (Nile tilapia)   30 29
Astyanax_mexicanus_76   (Mexican tetra)   24 24
Danio_rerio_76_9   (Zebrafish)   44 43
Oikopleura_dioica 11 10
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   19 19
Ciona_intestinalis_76   (Vase tunicate)   17 17
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   47 43
Adineta_vaga 45 45
Octopus_bimaculoides_280 38 38
Crassostrea_gigas_22   (Pacific oyster)   47 37
Lottia_gigantea_   (Owl limpet)   18 18
Helobdella_robusta_ 14 14
Capitella_sp._I_ 41 41
Danaus_plexippus_OGS1.0   (Monarch butterfly)   5 5
Heliconius_melpomene_   (Postman butterfly)   5 5
Bombyx_mori_   (Domestic silkworm)   5 5
Nasonia_vitripennis_   (Jewel wasp)   6 6
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   8 8
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   5 5
Linepithema_humile_v1.1   (Argentine ant)   11 11
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   12 12
Solenopsis_invicta_v.2.2.3   (Red fire ant)   9 9
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   8 8
Atta_cephalotes_v1.1 9 9
Camponotus_floridanus_v3.3   (Florida carpenter ant)   6 6
Lucilia_cuprina   (Australian sheep blowfly)   12 10
Drosophila_grimshawi_1.3 9 9
Drosophila_willistoni_1.3 11 11
Drosophila_pseudoobscura_2.13 8 8
Drosophila_persimilis_1.3 7 7
Drosophila_suzukii 8 7
Drosophila_yakuba_1.3 7 7
Drosophila_simulans_1.3 6 6
Drosophila_sechellia_1.3 7 7
Drosophila_melanogaster_76_5   (Fruit fly)   8 8
Drosophila_erecta_1.3 6 6
Drosophila_ananassae_1.3 7 7
Drosophila_virilis_1.2 8 8
Drosophila_mojavensis_1.3 9 9
Megaselia_scalaris_22 5 5
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   10 10
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   17 15
Anopheles_darlingi_22   (American malaria mosquito)   4 4
Anopheles_gambiae_49_3j   (African malaria mosquito)   17 17
Tribolium_castaneum_3.0   (Red flour beetle)   8 8
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   5 5
Acyrthosiphon_pisum_   (Pea aphid)   4 4
Rhodnius_prolixus_22 6 5
Daphnia_pulex_   (Common water flea)   24 24
Strigamia_maritima_22 10 9
Sarcoptes_scabiei 3 3
Tetranychus_urticae_   (Two-spotted spider mite)   4 4
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   8 7
Pristionchus_pacificus_ 2 2
Meloidogyne_incognita_   (Southern root-knot nematode)   1 1
Meloidogyne_hapla_ 2 2
Onchocerca_volvulus_22 2 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2 2
Caenorhabditis_japonica_ 3 3
Caenorhabditis_brenneri_ 3 3
Caenorhabditis_remanei_ 3 3
Caenorhabditis_elegans_76_235   (Roundworm)   11 11
Caenorhabditis_briggsae_2 4 4
Trichinella_spiralis_22 2 2
Hymenolepis_microstoma_ 4 4
Echinococcus_multilocularis_ 5 5
Echinococcus_granulosus_ 5 5
Taenia_solium_   (Pork tapeworm)   6 6
Schistosoma_mansoni_ 5 5
Mnemiopsis_leidyi   (Sea walnut)   3 3
Acropora_digitifera_v1.0 42 32
Nematostella_vectensis_1.0   (Starlet sea anemone)   14 13
Hydra_vulgaris 19 19
Amphimedon_queenslandica 73 68
Trichoplax_adhaerens_ 7 7
Proterospongia_sp._ATCC_50818_ 1 1
Sphaeroforma_arctica_JP610_ 1 1
Capsaspora_owczarzaki_ATCC_30864_ 3 3
Conidiobolus_coronatus_NRRL28638_v1.0 4 4
Mortierella_verticillata_NRRL_6337_ 5 5
Phycomyces_blakesleeanus_ 4 4
Rhizopus_oryzae_RA_99-880_ 3 3
Mucor_circinelloides_ 4 4
Rhizomucor_miehei_CAU432_ 1 1
Malassezia_globosa_CBS_7966_ 2 2
Sporisorium_reilianum_22 1 1
Ustilago_maydis_ 1 1
Mixia_osmundae_IAM_14324_v1.0 1 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1 1
Melampsora_laricis-populina_ 1 1
Rhodotorula_graminis_WP1_v1.0 1 1
Sporobolomyces_roseus_IAM_13481_ 1 1
Wallemia_sebi_v1.0 2 2
Sphaerobolus_stellatus_v1.0 20 20
Piloderma_croceum_F_1598_v1.0 19 19
Serpula_lacrymans_var._lacrymans_S7.9_ 2 2
Coniophora_puteana 4 4
Hydnomerulius_pinastri_v2.0 6 6
Paxillus_rubicundulus_Ve08.2h10_v1.0 6 6
Pisolithus_microcarpus_441_v1.0 2 2
Pisolithus_tinctorius_Marx_270_v1.0 2 2
Scleroderma_citrinum_Foug_A_v1.0 3 3
Coprinopsis_cinerea_okayama7_130_v3 6 6
Pleurotus_ostreatus_   (Oyster mushroom)   4 4
Amanita_thiersii_Skay4041_v1.0 3 3
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1 1
Galerina_marginata_v1.0 26 26
Hebeloma_cylindrosporum_h7_v2.0 8 8
Laccaria_bicolor_S238N-H82_ 12 11
Agaricus_bisporus_var._bisporus_ 3 3
Schizophyllum_commune_ 4 4
Stereum_hirsutum_FP-91666_SS1__v1.0 28 28
Heterobasidion_annosum_ 4 4
Gloeophyllum_trabeumv1.0 4 4
Punctularia_strigosozonata_v1.0 3 3
Sebacina_vermifera_MAFF_305830_v1.0 14 14
Fomitiporia_mediterranea_v1.0 3 3
Tulasnella_calospora_AL13/4D_v1.0 12 12
Postia_placenta_ 5 5
Wolfiporia_cocos_MD-104_SS10__v1.0 8 8
Fomitopsis_pinicolav1.0 9 9
Fomitopsis_pinicola_FP-58527_SS1_v3.0 9 9
Phanerochaete_chrysosporium_RP-78_2.1 2 2
Dichomitus_squalens 3 3
Trametes_versicolor_v1.0 4 4
Tremella_mesenterica_   (Witches' butter)   1 1
Daldinia_eschscholzii_EC12_v1.0 4 4
Apiospora_montagnei_NRRL_25634_v1.0 3 3
Magnaporthe_poae_ATCC_64411_22 2 2
Magnaporthe_grisea_70-15_ 2 2
Podospora_anserina_ 2 2
Sporotrichum_thermophile_ATCC_42464_ 2 2
Thielavia_terrestris_NRRL_8126_ 2 2
Chaetomium_globosum_CBS_148.51_ 2 2
Neurospora_tetrasperma_ 1 1
Neurospora_discreta_FGSC_8579_ 2 2
Neurospora_crassa_OR74A_ 2 2
Cryphonectria_parasitica_   (Chestnut blight fungus)   2 2
Verticillium_albo-atrum_VaMs.102_ 1 1
Verticillium_dahliae_VdLs.17_ 3 3
Acremonium_alcalophilumv_1.0 2 2
Glomerella_graminicola_22 2 2
Fusarium_graminearum_ 2 2
Nectria_haematococca_mpVI_ 3 3
Fusarium_oxysporum_f._sp._lycopersici_4286_ 5 5
Fusarium_verticillioides_7600_ 2 2
Trichoderma_asperellum_CBS_433.97_v1.0 2 2
Trichoderma_atroviride_ 2 2
Trichoderma_citrinoviride_v1.0 2 2
Trichoderma_reesei_1.2 2 2
Trichoderma_virens_Gv29-8_ 3 3
Trichoderma_longibrachiatum_ATCC_18648_v1.0 2 2
Trichoderma_harzianum_CBS_226.95_v1.0 2 2
Amorphotheca_resinae_v1.0   (Creosote fungus)   2 2
Botrytis_cinerea_B05.10_ 1 1
Sclerotinia_sclerotiorum_ 1 1
Blumeria_graminis_22 2 2
Didymella_exigua_CBS_183.55_v1.0 1 1
Leptosphaeria_maculans_22 1 1
Setosphaeria_turcica_v1.0 1 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1 1
Cochliobolus_victoriae_FI3_v1.0 1 1
Cochliobolus_carbonum_26-R-13_v1.0 1 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1 1
Cochliobolus_lunatus_m118_v2.0 1 1
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 1 1
Mycosphaerella_graminicola_IPO323_ 1 1
Zasmidium_cellare_ATCC_36951_v1.0 2 2
Dothistroma_septosporum 1 1
Septoria_musiva_v1.0 2 2
Mycosphaerella_fijiensis_CIRAD86_ 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Paracoccidioides_brasiliensis_Pb18_ 1 1
Coccidioides_posadasii_RMSCC_3488_ 1 1
Coccidioides_immitis_RS_ 1 1
Ajellomyces_dermatitidis_SLH14081_ 1 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_equinum_CBS_127.97_ 2 2
Trichophyton_verrucosum_HKI_0517_ 2 2
Arthroderma_benhamiae_CBS_112371_ 1 1
Trichophyton_tonsurans_CBS_112818_ 2 2
Trichophyton_rubrum_CBS_118892_ 2 2
Uncinocarpus_reesii_1704_ 1 1
Aspergillus_zonatus_v1.0 2 2
Penicillium_chrysogenum_Wisconsin_54-1255_ 2 2
Penicillium_chrysogenum_v1.0 2 2
Aspergillus_acidus_v1.0 2 2
Aspergillus_fumigatus_Af293 2 2
Aspergillus_brasiliensis_v1.0 2 2
Aspergillus_nidulans_FGSC_A4_ 3 3
Aspergillus_sydowii_v1.0 2 2
Aspergillus_versicolor_v1.0 2 2
Aspergillus_glaucus 2 2
Aspergillus_carbonarius_ITEM_5010_ 2 2
Neosartorya_fischeri_NRRL_181_ 2 2
Aspergillus_terreus_NIH2624_ 2 2
Aspergillus_tubingensis_v1.0 2 2
Aspergillus_wentii_v1.0 3 3
Aspergillus_oryzae_RIB40_ 3 3
Aspergillus_niger_22 3 3
Aspergillus_niger_ATCC_1015_ 3 3
Aspergillus_flavus_NRRL3357_ 3 3
Aspergillus_clavatus_NRRL_1_ 2 2
Penicillium_marneffei_ATCC_18224_ 3 3
Tuber_melanosporum_Mel28_22 1 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1 1
Hansenula_polymorpha_v2.0 1 1
Dekkera_bruxellensis_CBS_2499_v2.0 1 1
Pichia_membranifaciensv1.0 1 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1 1
Candida_dubliniensis_CD36_ 1 1
Candida_tropicalis_MYA-3404_ 1 1
Candida_parapsilosis_ 1 1
Candida_albicans_SC5314 1 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 1 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 2 2
Pichia_stipitis_CBS_6054_ 2 2
Candida_guilliermondii_ATCC_6260_ 1 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3 3
Debaromyces_hansenii 1 1
Wickerhamomyces_anomalus 2 2
Pichia_pastoris_GS115_ 1 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2 2
Yarrowia_lipolytica_CLIB122 1 1
Candida_lusitaniae_ATCC_42720_ 1 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1 1
Vanderwaltozyma_polyspora_DSM_70294_ 2 2
Candida_glabrata_CBS138 1 1
Kluyveromyces_thermotolerans_CBS_6340 1 1
Lachancea_kluyveri_ 1 1
Kluyveromyces_waltii 1 1
Ashbya_gossypii_ATCC_10895_ 1 1
Zygosaccharomyces_rouxii_ 1 1
Saccharomyces_mikatae_MIT 1 1
Saccharomyces_paradoxus_MIT 1 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1 1
Saccharomyces_bayanus_MIT 1 1
Kluyveromyces_lactis 1 1
Schizosaccharomyces_cryophilus_OY26_22 1 1
Schizosaccharomyces_octosporus_yFS286_ 1 1
Schizosaccharomyces_japonicus_yFS275_ 1 1
Schizosaccharomyces_pombe   (Fission yeast)   1 1
Catenaria_anguillulae_PL171_v1.0 6 6
Allomyces_macrogynus_ATCC_38327_ 10 10
Spizellomyces_punctatus_DAOM_BR117_ 2 2
Dictyostelium_discoideum 2 2
Dictyostelium_purpureum_ 1 1
Pinus_taeda   (Loblolly pine)   12 11
Picea_abies   (Norway spruce)   3 3
Eucalyptus_grandis_v201   (Rose gum)   8 8
Theobroma_cacao_B97-61/B2_v1   (Cacao)   6 6
Gossypium_raimondii_v221 19 19
Citrus_clementina_v165 6 6
Citrus_sinensis_v154   (Sweet orange)   5 5
Thellungiella_halophila_v173 5 5
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   7 7
Capsella_rubella_v183 5 5
Arabidopsis_lyrata_   (Lyrate rockcress)   4 4
Arabidopsis_thaliana_10   (Thale cress)   6 6
Carica_papaya_   (Papaya)   5 5
Medicago_truncatula_   (Barrel medic)   11 11
Phaseolus_vulgaris_v186   (French bean)   7 7
Glycine_max_v109   (Soybean)   10 10
Cucumis_sativus_v122   (Cucumber)   6 6
Fragaria_vesca_   (Wild strawberry)   3 3
Malus_domestica_v196   (Apple)   14 14
Prunus_persica_v139   (Peach)   6 6
Linum_usitatissimum_v200   (Flax)   5 5
Manihot_esculenta_v147   (Cassava)   8 8
Populus_trichocarpa_v156   (Black cottonwood)   11 11
Vitis_vinifera_   (Wine grape)   5 5
Mimulus_guttatus_v140   (Spotted monkey flower)   10 10
Solanum_lycopersicum_v.2.3   (Tomato)   9 9
Solanum_tuberosum_   (Potato)   11 11
Actinidia_chinensis_Hongyang_ 5 5
Aquilegia_coerulea_v195 3 3
Triticum_urartu_22 1 1
Triticum_aestivum_22   (Bread wheat)   4 4
Aegilops_tauschii_22 3 3
Brachypodium_distachyon_   (Stiff brome)   4 4
Oryza_barthii_22   (African wild rice)   3 3
Oryza_meridionalis_22 4 4
Oryza_glumaepatula_22 4 4
Oryza_glaberrima   (African rice)   2 2
Oryza_punctata_22 4 4
Oryza_nivara_22 7 5
Oryza_brachyantha_22   (Malo sina)   2 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   5 5
Oryza_sativa_v193   (Rice)   5 5
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   3 3
Panicum_virgatum_v202   (Switchgrass)   6 6
Setaria_italica_v164   (Foxtail millet)   4 4
Zea_mays_subsp._mays_   (Maize)   5 5
Zea_mays_v181   (Maize)   5 5
Sorghum_bicolor_   (Sorghum)   4 4
Musa_balbisiana   (Balbis banana)   3 3
Musa_acuminata_22   (Wild Malaysian banana)   3 3
Amborella_trichopoda_22 4 4
Physcomitrella_patens 6 6
Coccomyxa_subellipsoidea_sp._C-169_v2 3 3
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_variabilis_sp._NC64A_ 1 1
Chlorella_vulgaris_ 3 3
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 2 2
Ostreococcus_tauri_ 1 1
Micromonas_sp._RCC299_ 1 1
Porphyridium_purpureum_02_2012 1 1
Bigelowiella_natans_CCMP2755_22 7 7
Cyanophora_paradoxa_ 4 4
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1 1
Trypanosoma_vivax_ 3 3
Trypanosoma_cruzi_strain_CL_Brener 1 1
Trypanosoma_congolense_2.4 1 1
Trypanosoma_brucei_gambiense_v4.1 4 4
Trypanosoma_brucei_TREU927_v4.1 4 4
Aureococcus_anophagefferens_ 1 1
Pythium_arrhenomanes_ATCC_12531_22 2 2
Pythium_ultimum_v1.7-2 1 1
Pythium_aphanidermatum_DAOM_BR444_22 2 2
Phytophthora_infestans_T30-4_ 1 1
Phaeodactylum_tricornutumCCAP_1055/1 4 4
Fragilariopsis_cylindrus 4 4
Thalassiosira_pseudonana_CCMP1335 4 4
Perkinsus_marinus_ATCC_50983_ 6 6
Neospora_caninum 1 1
Toxoplasma_gondii_VEG 1 1
Toxoplasma_gondii_ME49 1 1
Toxoplasma_gondii_GT1 1 1
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 22 22
Naegleria_gruberi_ 1 1
Trichomonas_vaginalis_ 16 16
Guillardia_theta_CCMP2712_v1.0_ 15 15
Emiliania_huxleyi_CCMP1516_ 8 8
Leptolyngbya_sp._PCC_7376 9 9
Pseudanabaena_sp._PCC_7367 1 1
Acaryochloris_marina_MBIC11017 8 8
Synechococcus_sp._PCC_7502 1 1
Synechococcus_sp._PCC_6312 1 1
Synechococcus_elongatus_PCC_7942 1 1
Microcoleus_sp._PCC_7113 13 13
Trichodesmium_erythraeum_IMS101 9 9
Geitlerinema_sp._PCC_7407 4 4
Cyanothece_sp._PCC_8802 2 2
Gloeocapsa_sp._PCC_7428 3 3
cyanobacterium_UCYN-A 1 1
Halothece_sp._PCC_7418 2 2
Microcystis_aeruginosa_NIES-843 5 5
Gloeobacter_violaceus_PCC_7421 2 2
Rivularia_sp._PCC_7116 7 7
Calothrix_sp._PCC_7507 8 8
Anabaena_variabilis_ATCC_29413 9 9
'Nostoc_azollae'_0708 2 2
Nostoc_sp._PCC_7107 10 10
Nostoc_punctiforme_PCC_73102 9 9
Nostoc_sp._PCC_7120 7 7
Nostoc_sp._PCC_7524 8 8
Anabaena_sp._90 6 6
Catenulispora_acidiphila_DSM_44928 2 2
Stackebrandtia_nassauensis_DSM_44728 3 3
Frankia_sp._EAN1pec 1 1
Frankia_alni_ACN14a 2 2
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 2 2
Kitasatospora_setae_KM-6054 1 1
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_sp._PAMC26508 1 1
Streptomyces_sp._SirexAA-E 1 1
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_bingchenggensis_BCW-1 2 2
Streptomyces_violaceusniger_Tu_4113 4 4
Streptomyces_avermitilis_MA-4680 1 1
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 3 3
Streptomyces_scabiei_87.22 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 3 3
Actinosynnema_mirum_DSM_43827 1 1
Saccharopolyspora_erythraea_NRRL_2338 3 3
Amycolatopsis_mediterranei_U32 3 3
Salinispora_arenicola_CNS-205 1 1
Verrucosispora_maris_AB-18-032 1 1
Micromonospora_sp._L5 1 1
Actinoplanes_sp._N902-109 4 4
Actinoplanes_sp._SE50/110 2 2
Actinoplanes_missouriensis_431 4 4
Nocardia_cyriacigeorgica_GUH-2 2 2
Kytococcus_sedentarius_DSM_20547 1 1
Intrasporangium_calvum_DSM_43043 3 3
Arthrobacter_sp._FB24 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1 1
Dehalococcoides_ethenogenes_195 1 1
Dehalococcoides_sp._BAV1 1 1
Herpetosiphon_aurantiacus_DSM_785 6 6
Roseiflexus_sp._RS-1 3 3
Roseiflexus_castenholzii_DSM_13941 2 2
Chloroflexus_sp._MS-G 3 3
Chloroflexus_sp._Y-400-fl 1 1
Chloroflexus_aggregans_DSM_9485 2 2
Chloroflexus_aurantiacus_J-10-fl 1 1
Clostridiales_genomosp._BVAB3_str._UPII9-5 1 1
Dehalobacter_sp._DCA 1 1
Dehalobacter_sp._CF 1 1
Desulfitobacterium_dehalogenans_ATCC_51507 1 1
Desulfotomaculum_acetoxidans_DSM_771 1 1
Clostridium_saccharolyticum_WM1 1 1
Butyrivibrio_proteoclasticus_B316 1 1
Alkaliphilus_metalliredigens_QYMF 1 1
Clostridium_cellulovorans_743B 1 1
Clostridium_botulinum_A_str._ATCC_3502 1 1
Carnobacterium_sp._17-4 1 1
Streptococcus_pseudopneumoniae_IS7493 1 1
Paenibacillus_polymyxa_M1 2 2
Geobacillus_thermoleovorans_CCB_US3_UF5 1 1
Geobacillus_kaustophilus_HTA426 1 1
Bacillus_pseudofirmus_OF4 1 1
Candidatus_Cloacamonas_acidaminovorans 14 14
Melioribacter_roseus_P3M 1 1
Ignavibacterium_album_JCM_16511 4 4
Pelodictyon_phaeoclathratiforme_BU-1 2 2
Chlorobium_chlorochromatii_CaD3 1 1
Chlorobium_phaeobacteroides_DSM_266 1 1
Chlorobium_limicola_DSM_245 1 1
Chloroherpeton_thalassium_ATCC_35110 2 2
Prosthecochloris_aestuarii_DSM_271 1 1
Haliscomenobacter_hydrossis_DSM_1100 28 28
Saprospira_grandis_str._Lewin 6 6
Niastella_koreensis_GR20-10 2 2
Chitinophaga_pinensis_DSM_2588 7 7
Salinibacter_ruber_M8 1 1
Rhodothermus_marinus_DSM_4252 1 1
Flexibacter_litoralis_DSM_6794 6 6
Belliella_baltica_DSM_15883 4 4
Cyclobacterium_marinum_DSM_745 2 2
Marivirga_tractuosa_DSM_4126 4 4
Fibrella_aestuarina 3 3
Leadbetterella_byssophila_DSM_17132 2 2
Dyadobacter_fermentans_DSM_18053 7 7
Cytophaga_hutchinsonii_ATCC_33406 3 3
Spirosoma_linguale_DSM_74 10 9
Runella_slithyformis_DSM_19594 5 5
Parabacteroides_distasonis_ATCC_8503 1 1
Tannerella_forsythia_ATCC_43037 1 1
Paludibacter_propionicigenes_WB4 1 1
Odoribacter_splanchnicus_DSM_20712 1 1
Prevotella_melaninogenica_ATCC_25845 1 1
Prevotella_intermedia_17 1 1
Prevotella_denticola_F0289 1 1
Prevotella_ruminicola_23 1 1
Porphyromonas_asaccharolytica_DSM_20707 1 1
Porphyromonas_gingivalis_ATCC_33277 4 4
Bacteroides_helcogenes_P_36-108 1 1
Bacteroides_fragilis_YCH46 1 1
Pedobacter_saltans_DSM_12145 2 2
Sphingobacterium_sp._21 1 1
Fluviicola_taffensis_DSM_16823 4 4
Owenweeksia_hongkongensis_DSM_17368 1 1
Krokinobacter_sp._4H-3-7-5 1 1
Lacinutrix_sp._5H-3-7-4 1 1
Robiginitalea_biformata_HTCC2501 1 1
Croceibacter_atlanticus_HTCC2559 1 1
Aequorivita_sublithincola_DSM_14238 3 3
Flavobacteriaceae_bacterium_3519-10 2 2
Polaribacter_sp._MED152 2 2
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 1 1
Weeksella_virosa_DSM_16922 1 1
Flavobacterium_indicum_GPTSA100-9 1 1
Flavobacterium_psychrophilum_JIP02/86 1 1
Flavobacterium_branchiophilum_FL-15 1 1
Flavobacterium_columnare_ATCC_49512 1 1
Flavobacterium_johnsoniae_UW101 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 2 2
Waddlia_chondrophila_WSU_86-1044 1 1
Candidatus_Protochlamydia_amoebophila_UWE25 1 1
Parachlamydia_acanthamoebae_UV-7 1 1
Planctomyces_brasiliensis_DSM_5305 3 3
Rhodopirellula_baltica_SH_1 1 1
Pirellula_staleyi_DSM_6068 2 2
Coraliomargarita_akajimensis_DSM_45221 1 1
Turneriella_parva_DSM_21527 2 2
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 1 1
Leptospira_interrogans_serovar_Lai_str._IPAV 1 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 2 2
Brachyspira_pilosicoli_95/1000 1 1
Spirochaeta_smaragdinae_DSM_11293 2 2
Sphaerochaeta_pleomorpha_str._Grapes 2 2
Sphaerochaeta_globus_str._Buddy 1 1
Treponema_azotonutricium_ZAS-9 2 2
Treponema_succinifaciens_DSM_2489 2 2
Spirochaeta_africana_DSM_8902 1 1
Calditerrivibrio_nitroreducens_DSM_19672 4 4
Denitrovibrio_acetiphilus_DSM_12809 2 2
Deferribacter_desulfuricans_SSM1 1 1
Hydrogenobaculum_sp._Y04AAS1 1 1
Caldisericum_exile_AZM16c01 1 1
Candidatus_Chloracidobacterium_thermophilum_B 1 1
Candidatus_Solibacter_usitatus_Ellin6076 3 3
Candidatus_Koribacter_versatilis_Ellin345 1 1
Thermodesulfovibrio_yellowstonii_DSM_11347 1 1
Candidatus_Nitrospira_defluvii 3 3
Leptospirillum_ferrooxidans_C2-3 2 2
Candidatus_Methylomirabilis_oxyfera 1 1
Bacteriovorax_marinus_SJ 1 1
Desulfomonile_tiedjei_DSM_6799 1 1
Syntrophobacter_fumaroxidans_MPOB 3 3
Desulfotalea_psychrophila_LSv54 2 2
Desulfobulbus_propionicus_DSM_2032 1 1
Desulfatibacillum_alkenivorans_AK-01 2 2
Desulfobacterium_autotrophicum_HRM2 1 1
Desulfococcus_oleovorans_Hxd3 7 7
Desulfovibrio_magneticus_RS-1 1 1
Desulfovibrio_salexigens_DSM_2638 6 6
Geobacter_sp._M21 3 3
Geobacter_lovleyi_SZ 3 3
Geobacter_sulfurreducens_KN400 1 1
Geobacter_metallireducens_GS-15 1 1
Pelobacter_propionicus_DSM_2379 1 1
Haliangium_ochraceum_DSM_14365 4 4
Sorangium_cellulosum_'So_ce_56' 3 3
Anaeromyxobacter_sp._Fw109-5 1 1
Anaeromyxobacter_dehalogenans_2CP-1 1 1
Stigmatella_aurantiaca_DW4/3-1 1 1
Corallococcus_coralloides_DSM_2259 5 5
Myxococcus_xanthus_DK_1622 2 2
Myxococcus_fulvus_HW-1 3 3
Dechloromonas_aromatica_RCB 3 3
Thauera_sp._MZ1T 1 1
Dechlorosoma_suillum_PS 1 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 14 14
Methylibium_petroleiphilum_PM1 1 1
Rubrivivax_gelatinosus_IL144 1 1
Burkholderia_phytofirmans_PsJN 1 1
Burkholderia_phymatum_STM815 1 1
Burkholderia_xenovorans_LB400 1 1
Ralstonia_pickettii_12D 1 1
Burkholderia_sp._RPE64 1 1
Burkholderia_sp._CCGE1002 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_vietnamiensis_G4 2 2
Polaromonas_sp._JS666 1 1
Polaromonas_naphthalenivorans_CJ2 2 2
Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1
Bordetella_bronchiseptica_RB50 1 1
Nitrosomonas_sp._Is79A3 2 1
Gallionella_capsiferriformans_ES-2 1 1
Magnetococcus_marinus_MC-1 2 2
Brevundimonas_subvibrioides_ATCC_15264 1 1
Caulobacter_segnis_ATCC_21756 1 1
Sphingopyxis_alaskensis_RB2256 1 1
Sphingobium_chlorophenolicum_L-1 1 1
Sphingomonas_wittichii_RW1 2 2
Ruegeria_sp._TM1040 1 1
Rhodobacter_sphaeroides_ATCC_17029 2 2
Paracoccus_denitrificans_PD1222 2 2
Magnetospirillum_magneticum_AMB-1 4 4
Rhodospirillum_rubrum_F11 3 3
Azospirillum_lipoferum_4B 4 4
Azospirillum_sp._B510 3 3
Azospirillum_brasilense_Sp245 3 3
Polymorphum_gilvum_SL003B-26A1 1 1
Xanthobacter_autotrophicus_Py2 4 4
Methylobacterium_chloromethanicum_CM4 1 1
Methylobacterium_extorquens_AM1 1 1
Methylobacterium_sp._4-46 9 9
Methylobacterium_populi_BJ001 1 1
Methylobacterium_nodulans_ORS_2060 12 12
Methylobacterium_radiotolerans_JCM_2831 1 1
Sinorhizobium_fredii_NGR234 1 1
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 1 1
Rhizobium_etli_CIAT_652 1 1
Rhizobium_leguminosarum_bv._viciae_3841 4 4
Agrobacterium_radiobacter_K84 1 1
Agrobacterium_vitis_S4 1 1
Mesorhizobium_opportunistum_WSM2075 10 10
Mesorhizobium_ciceri_biovar_biserrulae_WSM1271 4 4
Mesorhizobium_loti_MAFF303099 8 8
Methylocella_silvestris_BL2 5 5
Beijerinckia_indica_subsp._indica_ATCC_9039 1 1
Rhodomicrobium_vannielii_ATCC_17100 3 3
Hyphomicrobium_denitrificans_ATCC_51888 1 1
Oligotropha_carboxidovorans_OM4 1 1
Rhodopseudomonas_palustris_BisA53 8 8
Nitrobacter_winogradskyi_Nb-255 5 5
Nitrobacter_hamburgensis_X14 2 2
Bradyrhizobium_japonicum_USDA_110 18 18
Bradyrhizobium_sp._ORS_278 18 18
Vibrio_fischeri_MJ11 1 1
Photobacterium_profundum_SS9 1 1
Shewanella_baltica_OS185 1 1
Shewanella_sp._MR-4 1 1
Colwellia_psychrerythraea_34H 1 1
Hahella_chejuensis_KCTC_2396 3 3
Methylomicrobium_alcaliphilum 4 4
Methylomonas_methanica_MC09 2 2
Rhodanobacter_denitrificans 1 1
Frateuria_aurantia_DSM_6220 1 1
Stenotrophomonas_maltophilia_K279a 1 1
Xylella_fastidiosa_M23 1 1
Xanthomonas_axonopodis_pv._citri_str._306 2 2
Xanthomonas_oryzae_pv._oryzae_PXO99A 3 3
Xanthomonas_campestris_pv._campestris_str._B100 3 3
Nitrosococcus_halophilus_Nc4 2 2
Nitrosococcus_oceani_ATCC_19707 1 1
Providencia_stuartii_MRSN_2154 1 1
Serratia_sp._ATCC_39006 1 1
Pseudomonas_sp._TKP 1 1
Pseudomonas_sp._UW4 2 2
Pseudomonas_brassicacearum_subsp._brassicacearum_NFM421 1 1
Pseudomonas_entomophila_L48 1 1
Pseudomonas_syringae_pv._tomato_str._DC3000 2 2
Pseudomonas_stutzeri_A1501 1 1
Pseudomonas_fulva_12-X 1 1
Pseudomonas_putida_F1 1 1
Pseudomonas_protegens_Pf-5 1 1
Pseudomonas_fluorescens_SBW25 1 1
Pseudomonas_mendocina_ymp 1 1
Pseudomonas_aeruginosa_UCBPP-PA14 1 1
Pseudomonas_sp._VLB120 1 1
Psychrobacter_sp._G 1 1
Psychrobacter_arcticus_273-4 1 1
Psychrobacter_cryohalolentis_K5 1 1
Acinetobacter_oleivorans_DR1 1 1
Acinetobacter_calcoaceticus_PHEA-2 1 1
Acinetobacter_baumannii_ATCC_17978 1 1
Acinetobacter_sp._ADP1 1 1
Pyrolobus_fumarii_1A 2 2
Hyperthermus_butylicus_DSM_5456 1 1
Methanosaeta_harundinacea_6Ac 7 7
Methanosaeta_thermophila_PT 1 1
Methanosaeta_concilii_GP6 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Archaeoglobus_fulgidus_DSM_4304 1 1
Thermococcus_onnurineus_NA1 1 1
Pyrococcus_yayanosii_CH1 1 1
Methanotorris_igneus_Kol_5 1 1
Methanothermus_fervidus_DSM_2088 1 1
Aciduliprofundum_sp._MAR08-339 1 1
Aciduliprofundum_boonei_T469 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   24 24
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   8 8
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   17 17
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2 2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   9 9
Cryptococcus_neoformans_var._grubii_H99_ 2 2
Cryptococcus_neoformans_B-3501A_ 2 2
Cryptococcus_neoformans_JEC21_ 2 2
Paracoccidioides_brasiliensis_Pb01_ 1 1
Paracoccidioides_brasiliensis_Pb03_ 1 1
Coccidioides_posadasii_str._Silveira_ 1 1
Ajellomyces_dermatitidis_ER-3_ 1 1
Histoplasma_capsulatum_H143 1 1
Histoplasma_capsulatum_H88 1 1
Histoplasma_capsulatum_G186AR 1 1
Aspergillus_fumigatus_A1163_ 2 2
Candida_albicans_WO-1_ 1 1
Saccharomyces_cerevisiae_UC5 1 1
Saccharomyces_cerevisiae_PW5 1 1
Saccharomyces_cerevisiae_CLIB324 1 1
Saccharomyces_cerevisiae_CBS7960 1 1
Saccharomyces_cerevisiae_YJM269 1 1
Saccharomyces_cerevisiae_T7 1 1
Saccharomyces_cerevisiae_FostersB 1 1
Saccharomyces_cerevisiae_FostersO 1 1
Saccharomyces_cerevisiae_VL3 1 1
Saccharomyces_cerevisiae_Vin13 1 1
Saccharomyces_cerevisiae_LalvinQA23 1 1
Saccharomyces_cerevisiae_AWRI796 1 1
Saccharomyces_cerevisiae_Sigma1278b 1 1
Saccharomyces_cerevisiae_W303 1 1
Saccharomyces_cerevisiae_JAY291 1 1
Saccharomyces_cerevisiae_AWRI1631 1 1
Saccharomyces_cerevisiae_YPS163 1 1
Saccharomyces_cerevisiae_CLIB215 1 1
Saccharomyces_cerevisiae_YJM789_ 1 1
Saccharomyces_cerevisiae_YJM789 1 1
Saccharomyces_cerevisiae_RM11-1a 1 1
Saccharomyces_cerevisiae_RM11-1a_ 1 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1 1
Schizosaccharomyces_pombe_972h-_ 1 1
Batrachochytrium_dendrobatidis_JAM81_ 1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   6 6
Hordeum_vulgare_22   (Domesticated barley)   6 6
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5 5
Trypanosoma_brucei_Lister_427_v4.1 4 4
Neospora_caninum_Nc-Liverpool_6.2 1 1
Plasmodium_falciparum_HB3_ 1 1
Plasmodium_falciparum_Dd2_ 1 1
Chroococcidiopsis_thermalis_PCC_7203 4 4
Chamaesiphon_minutus_PCC_6605 1 1
Synechococcus_sp._PCC_7002 1 1
Synechococcus_elongatus_PCC_6301 1 1
Crinalium_epipsammum_PCC_9333 6 6
Oscillatoria_nigro-viridis_PCC_7112 4 4
Oscillatoria_acuminata_PCC_6304 4 4
Arthrospira_platensis_NIES-39 4 4
Cyanothece_sp._PCC_7822 3 3
Cyanothece_sp._PCC_7424 7 7
Cyanothece_sp._ATCC_51142 3 3
Cyanothece_sp._PCC_8801 2 2
Cyanobacterium_aponinum_PCC_10605 3 3
Cyanobacterium_stanieri_PCC_7202 1 1
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 3 3
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 1 1
Stanieria_cyanosphaera_PCC_7437 5 5
Calothrix_parietina_Calothrix_sp._PCC_6303 15 15
Cylindrospermum_stagnale_PCC_7417 9 9
Anabaena_cylindrica_PCC_7122 5 5
Frankia_sp._EuI1c 3 3
Nocardiopsis_alba_ATCC_BAA-2165 1 1
Streptomyces_albus_J1074 2 2
Streptomyces_rapamycinicus_NRRL_5491 3 3
Streptomyces_davawensis_JCM_4913 10 10
Streptomyces_venezuelae_ATCC_10712 2 2
Streptomyces_collinus_Tu_365 2 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 3 3
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 3 3
Saccharothrix_espanaensis_DSM_44229 7 7
Amycolatopsis_mediterranei_RB 3 3
Amycolatopsis_mediterranei_S699 3 3
Amycolatopsis_mediterranei_S699 3 3
Amycolatopsis_orientalis_HCCB10007 2 2
Actinoplanes_friuliensis_DSM_7358 4 4
Nocardia_brasiliensis_ATCC_700358 2 2
Mycobacterium_sp._MOTT36Y 1 1
Dehalococcoides_mccartyi_GY50 1 1
Dehalococcoides_mccartyi_DCMB5 1 1
Dehalococcoides_mccartyi_BTF08 1 1
Dehalococcoides_sp._GT 1 1
Dehalococcoides_sp._VS 1 1
Dehalococcoides_sp._CBDB1 1 1
Faecalibacterium_prausnitzii_L2-6 1 1
Desulfitobacterium_hafniense_DCB-2 1 1
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_B1_str._Okra 1 1
Clostridium_botulinum_Ba4_str._657 1 1
Clostridium_botulinum_A2_str._Kyoto 1 1
Clostridium_botulinum_A3_str._Loch_Maree 1 1
Clostridium_botulinum_A_str._Hall 1 1
Clostridium_botulinum_A_str._ATCC_19397 1 1
Streptococcus_pneumoniae_INV200 1 1
Streptococcus_pneumoniae_CGSP14 1 1
Paenibacillus_polymyxa_SC2 2 2
Bacillus_thuringiensis_HD-789 1 1
Bacillus_cereus_AH820 1 1
Bacillus_cereus_AH187 1 1
Chlorobium_phaeobacteroides_BS1 1 1
Rhodothermus_marinus_SG0.5JP17-172 1 1
Echinicola_vietnamensis_DSM_17526 2 2
Emticicia_oligotrophica_DSM_17448 2 2
Prevotella_sp._oral_taxon_299_str._F0039 2 2
Prevotella_dentalis_DSM_3688 1 1
Porphyromonas_gingivalis_TDC60 4 4
Porphyromonas_gingivalis_W83 4 4
Bacteroides_fragilis_638R 1 1
Bacteroides_fragilis_NCTC_9343 1 1
Nonlabens_dokdonensis_DSW-6 1 1
Psychroflexus_torquis_ATCC_700755 4 4
Riemerella_anatipestifer_RA-CH-2 1 1
Riemerella_anatipestifer_RA-CH-1 1 1
Riemerella_anatipestifer_RA-GD 1 1
Riemerella_anatipestifer_ATCC_11845_=_DSM_15868 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 2 2
Singulisphaera_acidiphila_DSM_18658 6 6
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 1 1
Leptospira_interrogans_serovar_Lai_str._56601 1 1
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 1 1
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 2 2
Brachyspira_pilosicoli_WesB 1 1
Brachyspira_pilosicoli_B2904 1 1
Brachyspira_pilosicoli_P43/6/78 1 1
Bdellovibrio_exovorus_JSS 1 1
Campylobacter_jejuni_subsp._jejuni_81116 1 1
Desulfobacula_toluolica_Tol2 6 6
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 4 4
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1 1
Desulfovibrio_desulfuricans_ND132 3 3
Geobacter_sp._M18 2 2
Geobacter_sulfurreducens_PCA 1 1
Sorangium_cellulosum_So0157-2 4 4
Anaeromyxobacter_sp._K 1 1
Anaeromyxobacter_dehalogenans_2CP-C 1 1
Myxococcus_stipitatus_DSM_14675 5 5
Burkholderia_phenoliruptrix_BR3459a 1 1
Burkholderia_sp._CCGE1003 1 1
Burkholderia_sp._CCGE1001 1 1
Burkholderia_sp._KJ006 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 2 2
Leisingera_methylohalidivorans_DSM_14336 4 4
Octadecabacter_antarcticus_307 1 1
Rhodobacter_sphaeroides_KD131 2 2
Rhodobacter_sphaeroides_2.4.1 3 3
Rhodospirillum_rubrum_ATCC_11170 3 3
Methylobacterium_extorquens_DM4 1 1
Methylobacterium_extorquens_PA1 1 1
Sinorhizobium_fredii_USDA_257 3 3
Sinorhizobium_meliloti_GR4 1 1
Rhizobium_etli_CFN_42 4 4
Rhizobium_etli_bv._mimosae_str._Mim1 3 3
Rhizobium_tropici_CIAT_899 1 1
Rhizobium_leguminosarum_bv._trifolii_WSM2304 2 2
Rhizobium_leguminosarum_bv._trifolii_WSM1325 7 7
Mesorhizobium_australicum_WSM2073 2 2
Hyphomicrobium_nitrativorans_NL23 1 1
Oligotropha_carboxidovorans_OM5 1 1
Oligotropha_carboxidovorans_OM5 1 1
Rhodopseudomonas_palustris_DX-1 6 6
Rhodopseudomonas_palustris_TIE-1 5 5
Rhodopseudomonas_palustris_HaA2 7 7
Rhodopseudomonas_palustris_BisB5 7 7
Rhodopseudomonas_palustris_BisB18 3 3
Rhodopseudomonas_palustris_CGA009 5 5
Bradyrhizobium_sp._S23321 19 19
Bradyrhizobium_sp._BTAi1 13 13
Bradyrhizobium_oligotrophicum_S58 11 11
Bradyrhizobium_japonicum_USDA_6 20 20
Glaciecola_psychrophila_170 1 1
Stenotrophomonas_maltophilia_D457 1 1
Stenotrophomonas_maltophilia_JV3 1 1
Stenotrophomonas_maltophilia_R551-3 1 1
Xylella_fastidiosa_subsp._fastidiosa_GB514 1 1
Xylella_fastidiosa_M12 1 1
Xylella_fastidiosa_Temecula1 1 1
Xylella_fastidiosa_9a5c 1 1
Xanthomonas_citri_subsp._citri_Aw12879 2 2
Xanthomonas_campestris_pv._vesicatoria_str._85-10 2 2
Xanthomonas_axonopodis_pv._citrumelo_F1 1 1
Xanthomonas_axonopodis_Xac29-1 2 2
Xanthomonas_oryzae_pv._oryzicola_BLS256 2 2
Xanthomonas_oryzae_pv._oryzae_MAFF_311018 2 2
Xanthomonas_oryzae_pv._oryzae_KACC_10331 2 2
Xanthomonas_campestris_pv._raphani_756C 3 3
Xanthomonas_campestris_pv._campestris_str._8004 2 2
Xanthomonas_campestris_pv._campestris_str._ATCC_33913 2 2
Serratia_marcescens_FGI94 1 1
Escherichia_coli_UMNK88 1 1
Pseudomonas_denitrificans_ATCC_13867 1 1
Pseudomonas_syringae_pv._phaseolicola_1448A 1 1
Pseudomonas_syringae_pv._syringae_B728a 1 1
Pseudomonas_stutzeri_CCUG_29243 1 1
Pseudomonas_stutzeri_DSM_10701 1 1
Pseudomonas_stutzeri_DSM_4166 1 1
Pseudomonas_stutzeri_RCH2 1 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1 1
Pseudomonas_monteilii_SB3101 1 1
Pseudomonas_monteilii_SB3078 1 1
Pseudomonas_putida_H8234 1 1
Pseudomonas_putida_HB3267 1 1
Pseudomonas_putida_NBRC_14164 1 1
Pseudomonas_putida_DOT-T1E 1 1
Pseudomonas_putida_S16 1 1
Pseudomonas_putida_BIRD-1 1 1
Pseudomonas_putida_W619 1 1
Pseudomonas_putida_ND6 1 1
Pseudomonas_putida_KT2440 1 1
Pseudomonas_putida_GB-1 1 1
Pseudomonas_protegens_CHA0 1 1
Pseudomonas_poae_RE*1-1-14 1 1
Pseudomonas_fluorescens_F113 1 1
Pseudomonas_fluorescens_A506 1 1
Pseudomonas_fluorescens_R124 2 2
Pseudomonas_fluorescens_Pf0-1 1 1
Pseudomonas_resinovorans_NBRC_106553 1 1
Pseudomonas_mendocina_NK-01 1 1
Pseudomonas_aeruginosa_SCV20265 1 1
Pseudomonas_aeruginosa_MTB-1 1 1
Pseudomonas_aeruginosa_LES431 1 1
Pseudomonas_aeruginosa_RP73 1 1
Pseudomonas_aeruginosa_B136-33 1 1
Pseudomonas_aeruginosa_PA1R 1 1
Pseudomonas_aeruginosa_PA1 1 1
Pseudomonas_aeruginosa_DK2 1 1
Pseudomonas_aeruginosa_NCGM2.S1 1 1
Pseudomonas_aeruginosa_M18 1 1
Pseudomonas_aeruginosa_LESB58 1 1
Pseudomonas_aeruginosa_PA7 1 1
Pseudomonas_aeruginosa_PAO1 1 1
Acinetobacter_genomosp._13TU__RUH2624 1 1
Acinetobacter_sp.__SH024 1 1
Acinetobacter_calcoaceticus_ruh2202 1 1
Acinetobacter_baumannii_ZW85-1 1 1
Acinetobacter_baumannii_TYTH-1 1 1
Acinetobacter_baumannii_BJAB0868 1 1
Acinetobacter_baumannii_BJAB0715 1 1
Acinetobacter_baumannii_BJAB07104 1 1
Acinetobacter_baumannii_TCDC-AB0715 1 1
Acinetobacter_baumannii_D1279779 1 1
Acinetobacter_baumannii_MDR-TJ 1 1
Acinetobacter_baumannii_1656-2 1 1
Acinetobacter_baumannii__ATCC_19606 1 1
Acinetobacter_baumannii_AB307-0294 1 1
Acinetobacter_baumannii_AYE 1 1
Acinetobacter_baumannii_SDF 1 1
Acinetobacter_baumannii_MDR-ZJ06 1 1
Acinetobacter_baumannii_AB0057 1 1
Acinetobacter_baumannii_ACICU 1 1
Acinetobacter_radioresistens__SH164 1 1
Acinetobacter_junii__SH205 1 1
Acinetobacter_johnsonii__SH046 1 1
Acinetobacter_lwoffii__SH145 1 1
Thermococcus_sp._CL1 1 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   15 15
Pan_troglodytes_69_2.1.4   (Chimpanzee)   15 15
Gorilla_gorilla_69_3.1   (Western gorilla)   16 16
Pongo_abelii_69_2   (Sumatran orangutan)   15 15
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   14 14
Macaca_mulatta_69_1   (Rhesus monkey)   16 16
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   13 13
Otolemur_garnettii_69_3   (Small-eared galago)   14 14
Microcebus_murinus_69_1   (Gray mouse lemur)   16 14
Rattus_norvegicus_69_3.4   (Norway rat)   14 14
Mus_musculus_69_38   (House mouse)   13 13
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   10 10
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   13 13
Cavia_porcellus_69_3   (Domestic guinea pig)   14 14
Oryctolagus_cuniculus_69_2   (Rabbit)   12 12
Ochotona_princeps_69   (American pika)   14 12
Tupaia_belangeri_69   (Northern tree shrew)   15 14
Sus_scrofa_69_10.2   (Pig)   14 14
Bos_taurus_69_3.1   (Cattle)   12 12
Vicugna_pacos_69_1   (Alpaca)   11 10
Tursiops_truncatus_69_1   (Bottlenose dolphin)   15 13
Mustela_putorius_furo_69_1.0   (Domestic ferret)   12 12
Ailuropoda_melanoleuca_69_1   (Giant panda)   14 14
Canis_familiaris_69_3.1   (Dog)   15 14
Felis_catus_69   (Domestic cat)   12 10
Equus_caballus_69_2   (Horse)   16 15
Myotis_lucifugus_69_2.0   (Little brown bat)   20 20
Pteropus_vampyrus_69_1   (Large flying fox)   14 13
Sorex_araneus_69_1   (European shrew)   16 15
Erinaceus_europaeus_69   (Western European hedgehog)   15 13
Procavia_capensis_69_1   (Cape rock hyrax)   12 12
Loxodonta_africana_69_3   (African savanna elephant)   14 14
Echinops_telfairi_69   (Small Madagascar hedgehog)   19 13
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   12 10
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   12 12
Macropus_eugenii_69_1.0   (Tammar wallaby)   15 14
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   18 18
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   22 21
Ornithorhynchus_anatinus_69_5   (Platypus)   14 14
Petromyzon_marinus_69_7.0   (Sea lamprey)   10 10
Meleagris_gallopavo_69_2   (Turkey)   14 14
Gallus_gallus_69_2   (Chicken)   13 13
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   14 14
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   16 16
Anolis_carolinensis_69_2.0   (Green anole)   11 11
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   12 12
Latimeria_chalumnae_69_1   (Coelacanth)   15 15
Gadus_morhua_69_1   (Atlantic cod)   31 30
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   13 13
Takifugu_rubripes_69_4   (Torafugu)   17 17
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   18 18
Oryzias_latipes_69_1   (Japanese medaka)   13 13
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   17 17
Oreochromis_niloticus_69_1.0   (Nile tilapia)   25 24
Danio_rerio_69_9   (Zebrafish)   26 25
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   15 15
Ciona_intestinalis_69   (Vase tunicate)   17 17
Drosophila_melanogaster_69_5   (Fruit fly)   7 7
Caenorhabditis_elegans_69_215   (Roundworm)   5 5
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1 1
Arabidopsis_thaliana_10   (Thale cress)   5 5

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   85 85
Homo_sapiens__(NCBI_version)   (Human)   46 46
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   13 13
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   3 3
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   2 2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2 2
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Lotus_japonicus__(Early_assembly) 3 3
Malus_x_domestica_(Duplicate)   (Apple)   14 14
Ricinus_communis__(Early_assembly)   (Castor bean)   7 7
Nicotiana_benthamiana_0.4.4_(Early_draft) 9 9
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   9 9
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   9 9
NCBI_plasmid_sequences_(Plasmids) 70 70
Protozoadb_2010_08_(Protozoadb) 46 46
UniProt__viral_sequences_(Viral) 5 5
Protein_Data_Bank_(all_PDB_sequenc) 701 701
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1108 1104
STRING_v9.0.5_(STRING) 1334 1317
Uniprot_2018_03_genome 26093 25794
PDB_chains_(SCOP_1.75)_(PDB) 38 38
NCBI_2017_08_genome 35092 34819
NCBI_viral_sequences_(Viral) 8 8
TargetDB__(Targets) 82 82

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