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Domain combinations for Toll/Interleukin receptor TIR domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Toll/Interleukin receptor TIR domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   71 71
Pan_troglodytes_76_2.1.4   (Chimpanzee)   23 23
Gorilla_gorilla_76_3.1   (Western gorilla)   33 33
Pongo_abelii_76_2   (Sumatran orangutan)   22 22
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   27 27
Papio_anubis_76   (Olive baboon)   24 24
Macaca_mulatta_76_1   (Rhesus monkey)   42 42
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   42 42
Otolemur_garnettii_76_3   (Small-eared galago)   24 24
Microcebus_murinus_76_1   (Gray mouse lemur)   18 18
Rattus_norvegicus_76_5.0   (Norway rat)   26 26
Mus_musculus_76_38   (House mouse)   43 43
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   18 18
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   31 31
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   21 21
Cavia_porcellus_76_3   (Domestic guinea pig)   28 28
Oryctolagus_cuniculus_76_2   (Rabbit)   25 25
Ochotona_princeps_76   (American pika)   17 17
Tupaia_belangeri_76   (Northern tree shrew)   15 15
Sus_scrofa_76_10.2   (Pig)   36 36
Bos_taurus_76_3.1   (Cattle)   22 22
Ovis_aries_76_3.1   (Sheep)   26 26
Vicugna_pacos_76_1   (Alpaca)   18 18
Tursiops_truncatus_76_1   (Bottlenose dolphin)   19 19
Mustela_putorius_furo_76_1.0   (Domestic ferret)   22 22
Ailuropoda_melanoleuca_76_1   (Giant panda)   29 29
Canis_familiaris_76_3.1   (Dog)   31 31
Felis_catus_76_6.2   (Domestic cat)   20 20
Equus_caballus_76_2   (Horse)   25 25
Myotis_lucifugus_76_2.0   (Little brown bat)   23 23
Pteropus_vampyrus_76_1   (Large flying fox)   21 21
Sorex_araneus_76_1   (European shrew)   17 17
Erinaceus_europaeus_76   (Western European hedgehog)   20 20
Procavia_capensis_76_1   (Cape rock hyrax)   17 16
Loxodonta_africana_76_3   (African savanna elephant)   27 27
Echinops_telfairi_76   (Small Madagascar hedgehog)   17 17
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   25 25
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   17 17
Macropus_eugenii_76_1.0   (Tammar wallaby)   20 20
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   27 27
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   20 20
Ornithorhynchus_anatinus_76_5   (Platypus)   21 21
Saccoglossus_kowalevskii_v3.0 100 80
Petromyzon_marinus_76_7.0   (Sea lamprey)   15 15
Meleagris_gallopavo_76_2   (Turkey)   32 32
Gallus_gallus_76_4   (Chicken)   28 28
Anas_platyrhynchos_76_1.0   (Mallard)   25 25
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   29 29
Ficedula_albicollis_76_1.0   (Collared flycatcher)   25 25
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   26 26
Anolis_carolinensis_76_2.0   (Green anole)   29 29
Xenopus_laevis_   (African clawed frog)   25 25
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   27 27
Latimeria_chalumnae_76_1   (Coelacanth)   31 31
Lepisosteus_oculatus_76   (Spotted gar)   33 33
Gadus_morhua_76_1   (Atlantic cod)   50 49
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   24 24
Takifugu_rubripes_76_4   (Torafugu)   61 61
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   24 24
Oryzias_latipes_76_1   (Japanese medaka)   21 21
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   25 25
Poecilia_formosa_76   (Amazon molly)   30 30
Oreochromis_niloticus_76_1.0   (Nile tilapia)   31 31
Astyanax_mexicanus_76   (Mexican tetra)   27 27
Danio_rerio_76_9   (Zebrafish)   48 48
Oikopleura_dioica 2 2
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   10 10
Ciona_intestinalis_76   (Vase tunicate)   13 13
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   293 278
Adineta_vaga 92 83
Octopus_bimaculoides_280 38 33
Crassostrea_gigas_22   (Pacific oyster)   125 111
Lottia_gigantea_   (Owl limpet)   88 78
Helobdella_robusta_ 16 15
Capitella_sp._I_ 101 92
Danaus_plexippus_OGS1.0   (Monarch butterfly)   13 13
Heliconius_melpomene_   (Postman butterfly)   10 10
Bombyx_mori_   (Domestic silkworm)   12 12
Nasonia_vitripennis_   (Jewel wasp)   8 8
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   17 17
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   7 7
Linepithema_humile_v1.1   (Argentine ant)   7 7
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   7 7
Solenopsis_invicta_v.2.2.3   (Red fire ant)   5 5
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   7 7
Atta_cephalotes_v1.1 6 6
Camponotus_floridanus_v3.3   (Florida carpenter ant)   8 8
Lucilia_cuprina   (Australian sheep blowfly)   11 9
Drosophila_grimshawi_1.3 10 10
Drosophila_willistoni_1.3 16 16
Drosophila_pseudoobscura_2.13 16 16
Drosophila_persimilis_1.3 17 17
Drosophila_suzukii 11 11
Drosophila_yakuba_1.3 14 14
Drosophila_simulans_1.3 11 11
Drosophila_sechellia_1.3 10 10
Drosophila_melanogaster_76_5   (Fruit fly)   25 25
Drosophila_erecta_1.3 10 10
Drosophila_ananassae_1.3 12 12
Drosophila_virilis_1.2 10 10
Drosophila_mojavensis_1.3 9 9
Megaselia_scalaris_22 14 14
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   16 16
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   14 14
Anopheles_darlingi_22   (American malaria mosquito)   10 7
Anopheles_gambiae_49_3j   (African malaria mosquito)   16 16
Tribolium_castaneum_3.0   (Red flour beetle)   12 12
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   8 8
Acyrthosiphon_pisum_   (Pea aphid)   10 10
Rhodnius_prolixus_22 7 7
Daphnia_pulex_   (Common water flea)   10 10
Strigamia_maritima_22 51 49
Sarcoptes_scabiei 7 6
Tetranychus_urticae_   (Two-spotted spider mite)   9 7
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   12 12
Pristionchus_pacificus_ 4 4
Meloidogyne_incognita_   (Southern root-knot nematode)   2 2
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 2 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   6 6
Caenorhabditis_japonica_ 2 2
Caenorhabditis_brenneri_ 4 4
Caenorhabditis_remanei_ 2 2
Caenorhabditis_elegans_76_235   (Roundworm)   7 7
Caenorhabditis_briggsae_2 3 3
Trichinella_spiralis_22 1 1
Hymenolepis_microstoma_ 3 3
Echinococcus_multilocularis_ 4 4
Echinococcus_granulosus_ 4 4
Taenia_solium_   (Pork tapeworm)   4 4
Schistosoma_mansoni_ 8 8
Mnemiopsis_leidyi   (Sea walnut)   19 16
Acropora_digitifera_v1.0 46 44
Nematostella_vectensis_1.0   (Starlet sea anemone)   23 18
Hydra_vulgaris 7 7
Amphimedon_queenslandica 8 7
Trichoplax_adhaerens_ 20 15
Proterospongia_sp._ATCC_50818_ 65 65
Monosiga_brevicollis_ 9 9
Capsaspora_owczarzaki_ATCC_30864_ 6 4
Aspergillus_niger_22 1 1
Dictyostelium_discoideum 2 2
Dictyostelium_purpureum_ 2 2
Selaginella_moellendorffii_ 1 1
Pinus_taeda   (Loblolly pine)   498 449
Picea_abies   (Norway spruce)   107 103
Eucalyptus_grandis_v201   (Rose gum)   457 444
Theobroma_cacao_B97-61/B2_v1   (Cacao)   32 32
Gossypium_raimondii_v221 45 44
Citrus_clementina_v165 116 116
Citrus_sinensis_v154   (Sweet orange)   120 119
Thellungiella_halophila_v173 105 104
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   170 163
Capsella_rubella_v183 110 103
Arabidopsis_lyrata_   (Lyrate rockcress)   174 166
Arabidopsis_thaliana_10   (Thale cress)   182 173
Carica_papaya_   (Papaya)   13 13
Medicago_truncatula_   (Barrel medic)   561 506
Phaseolus_vulgaris_v186   (French bean)   150 142
Glycine_max_v109   (Soybean)   203 192
Cucumis_sativus_v122   (Cucumber)   26 26
Fragaria_vesca_   (Wild strawberry)   190 177
Malus_domestica_v196   (Apple)   452 433
Prunus_persica_v139   (Peach)   173 173
Linum_usitatissimum_v200   (Flax)   159 158
Manihot_esculenta_v147   (Cassava)   46 46
Populus_trichocarpa_v156   (Black cottonwood)   188 182
Vitis_vinifera_   (Wine grape)   34 34
Mimulus_guttatus_v140   (Spotted monkey flower)   5 5
Solanum_lycopersicum_v.2.3   (Tomato)   41 39
Solanum_tuberosum_   (Potato)   104 104
Actinidia_chinensis_Hongyang_ 13 13
Aquilegia_coerulea_v195 4 4
Triticum_urartu_22 2 2
Triticum_aestivum_22   (Bread wheat)   6 6
Aegilops_tauschii_22 2 2
Brachypodium_distachyon_   (Stiff brome)   4 4
Oryza_barthii_22   (African wild rice)   3 3
Oryza_meridionalis_22 4 4
Oryza_glumaepatula_22 3 3
Oryza_glaberrima   (African rice)   4 4
Oryza_punctata_22 5 5
Oryza_nivara_22 4 4
Oryza_brachyantha_22   (Malo sina)   3 3
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   5 5
Oryza_sativa_v193   (Rice)   5 5
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   1 1
Panicum_virgatum_v202   (Switchgrass)   6 6
Setaria_italica_v164   (Foxtail millet)   5 5
Zea_mays_subsp._mays_   (Maize)   4 4
Zea_mays_v181   (Maize)   4 4
Sorghum_bicolor_   (Sorghum)   3 3
Musa_balbisiana   (Balbis banana)   5 5
Musa_acuminata_22   (Wild Malaysian banana)   4 4
Amborella_trichopoda_22 30 29
Physcomitrella_patens 15 15
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Chlorella_vulgaris_ 1 1
Volvox_carteri_f._nagariensis_ 7 7
Volvox_carteri_v199 4 4
Chlamydomonas_reinhardtii_4.0 6 6
Ostreococcus_sp._RCC809_ 1 1
Ostreococcus_tauri_ 1 1
Micromonas_sp._RCC299_ 1 1
Micromonas_pusilla_CCMP1545_v3.0 2 2
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Porphyridium_purpureum_02_2012 1 1
Thecamonas_trahens_ATCC_50062_ 24 23
Bigelowiella_natans_CCMP2755_22 3 3
Cyanophora_paradoxa_ 55 53
Aureococcus_anophagefferens_ 3 3
Albugo_laibachii_22 5 3
Pythium_iwayamai_DAOM_BR242034_22 9 6
Pythium_arrhenomanes_ATCC_12531_22 8 6
Pythium_ultimum_v1.7-2 20 14
Pythium_aphanidermatum_DAOM_BR444_22 15 9
Pythium_irregulare_DAOM_BR486_22 11 7
Pythium_vexans_DAOM_BR484_22 11 9
Phytophthora_ramorum_1.1   (Sudden oak death agent)   15 9
Phytophthora_sojae_1.1 15 10
Phytophthora_infestans_T30-4_ 23 17
Phytophthora_capsici_ 8 7
Hyaloperonospora_arabidopsidis_22 8 4
Perkinsus_marinus_ATCC_50983_ 2 2
Symbiodinium_minutum_clade_B1_v1.2 53 52
Guillardia_theta_CCMP2712_v1.0_ 13 13
Emiliania_huxleyi_CCMP1516_ 91 90
Leptolyngbya_sp._PCC_7376 19 5
Pseudanabaena_sp._PCC_7367 2 2
Acaryochloris_marina_MBIC11017 10 10
Synechocystis_sp._PCC_6803 1 1
Thermosynechococcus_sp._NK55 1 1
Thermosynechococcus_elongatus_BP-1 1 1
Synechococcus_sp._PCC_6312 1 1
Microcoleus_sp._PCC_7113 12 7
Trichodesmium_erythraeum_IMS101 1 1
Cyanothece_sp._PCC_8802 8 8
Halothece_sp._PCC_7418 1 1
Microcystis_aeruginosa_NIES-843 6 6
Gloeobacter_violaceus_PCC_7421 1 1
Rivularia_sp._PCC_7116 1 1
Calothrix_sp._PCC_7507 7 7
Anabaena_variabilis_ATCC_29413 5 3
Nostoc_punctiforme_PCC_73102 11 11
Nostoc_sp._PCC_7120 5 3
Anabaena_sp._90 6 4
Conexibacter_woesei_DSM_14684 2 2
Eggerthella_lenta_DSM_2243 1 1
Slackia_heliotrinireducens_DSM_20476 1 1
Modestobacter_marinus 2 2
Geodermatophilus_obscurus_DSM_43160 11 9
Catenulispora_acidiphila_DSM_44928 7 7
Frankia_symbiont_of_Datisca_glomerata 15 15
Frankia_sp._EAN1pec 22 22
Frankia_alni_ACN14a 26 25
Thermobifida_fusca_YX 1 1
Thermomonospora_curvata_DSM_43183 1 1
Streptosporangium_roseum_DSM_43021 7 7
Kitasatospora_setae_KM-6054 4 4
Streptomyces_coelicolor_A3(2) 8 8
Streptomyces_sp._PAMC26508 2 2
Streptomyces_flavogriseus_ATCC_33331 2 2
Streptomyces_sp._SirexAA-E 3 3
Streptomyces_griseus_subsp._griseus_NBRC_13350 4 4
Streptomyces_violaceusniger_Tu_4113 1 1
Streptomyces_avermitilis_MA-4680 3 2
Streptomyces_scabiei_87.22 6 6
Actinosynnema_mirum_DSM_43827 3 3
Saccharopolyspora_erythraea_NRRL_2338 1 1
Amycolatopsis_mediterranei_U32 1 1
Nocardioides_sp._JS614 1 1
Microlunatus_phosphovorus_NM-1 3 3
Salinispora_arenicola_CNS-205 2 2
Micromonospora_sp._L5 2 2
Micromonospora_aurantiaca_ATCC_27029 1 1
Actinoplanes_sp._N902-109 1 1
Actinoplanes_sp._SE50/110 6 6
Actinoplanes_missouriensis_431 4 4
Tsukamurella_paurometabola_DSM_20162 1 1
Gordonia_sp._KTR9 2 2
Rhodococcus_jostii_RHA1 3 3
Rhodococcus_opacus_B4 1 1
Rhodococcus_erythropolis_PR4 1 1
Mycobacterium_gilvum_PYR-GCK 1 1
Xylanimonas_cellulosilytica_DSM_15894 1 1
Arthrobacter_phenanthrenivorans_Sphe3 1 1
Arthrobacter_chlorophenolicus_A6 1 1
Arthrobacter_sp._Rue61a 1 1
Actinomyces_sp._F0330 2 2
Chloroflexus_sp._Y-400-fl 1 1
Chloroflexus_aurantiacus_J-10-fl 1 1
Deinococcus_gobiensis_I-0 2 2
Clostridium_clariflavum_DSM_19732 1 1
Eubacterium_siraeum 2 2
Clostridium_cellulolyticum_H10 1 1
Clostridium_thermocellum_ATCC_27405 2 2
Ethanoligenens_harbinense_YUAN-3 1 1
Ruminococcus_sp. 1 1
Ruminococcus_bromii 1 1
Desulfosporosinus_acidiphilus_SJ4 1 1
Desulfosporosinus_orientis_DSM_765 1 1
Syntrophobotulus_glycolicus_DSM_8271 1 1
Desulfitobacterium_hafniense_Y51 2 2
Desulfitobacterium_dehalogenans_ATCC_51507 1 1
Desulfotomaculum_ruminis_DSM_2154 1 1
Acetobacterium_woodii_DSM_1030 1 1
Eubacterium_eligens_ATCC_27750 1 1
Clostridium_saccharolyticum_WM1 2 2
Clostridium_lentocellum_DSM_5427 1 1
Eubacterium_rectale_M104/1 1 1
Eubacterium_rectale_ATCC_33656 1 1
Roseburia_intestinalis 1 1
Butyrivibrio_proteoclasticus_B316 1 1
Syntrophomonas_wolfei_subsp._wolfei_str._Goettingen 1 1
Clostridium_sp._BNL1100 1 1
Clostridium_novyi_NT 1 1
Clostridium_beijerinckii_NCIMB_8052 3 3
Clostridium_cellulovorans_743B 2 2
Thermoanaerobacterium_thermosaccharolyticum_DSM_571 1 1
Tepidanaerobacter_acetatoxydans_Re1 1 1
Carnobacterium_sp._17-4 1 1
Carnobacterium_sp._WN1359 1 1
Enterococcus_faecalis_62 1 1
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 1 1
Lactobacillus_crispatus_ST1 2 2
Lactobacillus_ruminis_ATCC_27782 1 1
Lactobacillus_brevis_ATCC_367 1 1
Streptococcus_pasteurianus_ATCC_43144 1 1
Streptococcus_infantarius_subsp._infantarius_CJ18 1 1
Streptococcus_macedonicus_ACA-DC_198 1 1
Brevibacillus_brevis_NBRC_100599 1 1
Paenibacillus_terrae_HPL-003 2 2
Geobacillus_thermoleovorans_CCB_US3_UF5 1 1
Bacillus_sp._1NLA3E 2 2
Bacillus_subtilis_subsp._subtilis_str._168 1 1
Bacillus_pseudofirmus_OF4 1 1
Bacillus_cellulosilyticus_DSM_2522 1 1
Macrococcus_caseolyticus_JCSC5402 1 1
Gemmatimonas_aurantiaca_T-27 1 1
Pelodictyon_phaeoclathratiforme_BU-1 13 13
Chlorobium_phaeobacteroides_DSM_266 6 6
Chlorobium_limicola_DSM_245 3 3
Chlorobaculum_parvum_NCIB_8327 3 3
Chlorobium_tepidum_TLS 2 2
Chloroherpeton_thalassium_ATCC_35110 2 2
Prosthecochloris_aestuarii_DSM_271 7 7
Haliscomenobacter_hydrossis_DSM_1100 9 9
Saprospira_grandis_str._Lewin 1 1
Niastella_koreensis_GR20-10 7 7
Chitinophaga_pinensis_DSM_2588 1 1
Flexibacter_litoralis_DSM_6794 4 2
Cyclobacterium_marinum_DSM_745 1 1
Marivirga_tractuosa_DSM_4126 2 2
Leadbetterella_byssophila_DSM_17132 1 1
Cytophaga_hutchinsonii_ATCC_33406 1 1
Spirosoma_linguale_DSM_74 4 4
Odoribacter_splanchnicus_DSM_20712 5 5
Bacteroides_sp._CF50 1 1
Prevotella_denticola_F0289 1 1
Prevotella_ruminicola_23 1 1
Porphyromonas_gingivalis_ATCC_33277 1 1
Bacteroides_vulgatus_ATCC_8482 1 1
Bacteroides_thetaiotaomicron_VPI-5482 2 2
Pedobacter_saltans_DSM_12145 1 1
Sphingobacterium_sp._21 2 2
Owenweeksia_hongkongensis_DSM_17368 1 1
Robiginitalea_biformata_HTCC2501 1 1
Aequorivita_sublithincola_DSM_14238 3 3
Muricauda_ruestringensis_DSM_13258 1 1
Capnocytophaga_ochracea_DSM_7271 1 1
Planctomyces_limnophilus_DSM_3776 4 4
Rhodopirellula_baltica_SH_1 4 4
Opitutus_terrae_PB90-1 2 2
Turneriella_parva_DSM_21527 2 2
Spirochaeta_smaragdinae_DSM_11293 1 1
Sphaerochaeta_globus_str._Buddy 1 1
Treponema_azotonutricium_ZAS-9 6 3
Treponema_denticola_ATCC_35405 2 2
Candidatus_Solibacter_usitatus_Ellin6076 4 4
Granulicella_tundricola_MP5ACTX9 2 2
Candidatus_Koribacter_versatilis_Ellin345 2 2
Terriglobus_saanensis_SP1PR4 1 1
Acidobacterium_capsulatum_ATCC_51196 1 1
Candidatus_Nitrospira_defluvii 1 1
Sebaldella_termitidis_ATCC_33386 1 1
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 1 1
Candidatus_Methylomirabilis_oxyfera 2 2
Acidithiobacillus_ferrooxidans_ATCC_53993 1 1
Helicobacter_pylori_B38 1 1
Sulfurovum_sp._NBC37-1 8 7
Desulfarculus_baarsii_DSM_2075 1 1
Syntrophus_aciditrophicus_SB 2 2
Syntrophobacter_fumaroxidans_MPOB 1 1
Desulfotalea_psychrophila_LSv54 1 1
Desulfobulbus_propionicus_DSM_2032 2 2
Desulfatibacillum_alkenivorans_AK-01 2 2
Desulfobacterium_autotrophicum_HRM2 1 1
Desulfococcus_oleovorans_Hxd3 2 2
Geobacter_daltonii_FRC-32 3 3
Geobacter_uraniireducens_Rf4 2 2
Geobacter_lovleyi_SZ 3 3
Geobacter_metallireducens_GS-15 3 3
Pelobacter_carbinolicus_DSM_2380 2 2
Haliangium_ochraceum_DSM_14365 3 3
Sorangium_cellulosum_'So_ce_56' 10 10
Anaeromyxobacter_sp._Fw109-5 4 4
Stigmatella_aurantiaca_DW4/3-1 3 3
Dechloromonas_aromatica_RCB 4 4
Thauera_sp._MZ1T 5 5
Azoarcus_sp._KH32C 1 1
Azoarcus_sp._BH72 4 4
Dechlorosoma_suillum_PS 2 2
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 9 9
Rubrivivax_gelatinosus_IL144 2 2
Leptothrix_cholodnii_SP-6 3 3
Burkholderia_xenovorans_LB400 1 1
Burkholderia_sp._CCGE1002 2 2
Burkholderia_thailandensis_E264 1 1
Burkholderia_gladioli_BSR3 2 2
Burkholderia_glumae_BGR1 1 1
Alicycliphilus_denitrificans_K601 1 1
Delftia_sp._Cs1-4 1 1
Polaromonas_sp._JS666 2 2
Rhodoferax_ferrireducens_T118 2 2
Acidovorax_ebreus_TPSY 1 1
Acidovorax_sp._KKS102 1 1
Acidovorax_sp._JS42 2 2
Acidovorax_citrulli_AAC00-1 1 1
Herminiimonas_arsenicoxydans 1 1
Janthinobacterium_sp._Marseille 1 1
Advenella_kashmirensis_WT001 1 1
Bordetella_bronchiseptica_RB50 1 1
Nitrosospira_multiformis_ATCC_25196 1 1
Nitrosomonas_sp._Is79A3 8 8
Gallionella_capsiferriformans_ES-2 5 5
Brevundimonas_subvibrioides_ATCC_15264 1 1
Caulobacter_sp._K31 2 2
Caulobacter_crescentus_NA1000 1 1
Caulobacter_segnis_ATCC_21756 1 1
Erythrobacter_litoralis_HTCC2594 1 1
Sphingobium_sp._SYK-6 2 2
Sphingobium_japonicum_UT26S 2 2
Sphingomonas_sp._MM-1 1 1
Sphingomonas_wittichii_RW1 2 2
Zymomonas_mobilis_subsp._mobilis_NCIMB_11163 1 1
Maricaulis_maris_MCS10 1 1
Hirschia_baltica_ATCC_49814 6 6
Hyphomonas_neptunium_ATCC_15444 2 2
Paracoccus_denitrificans_PD1222 1 1
Rhodospirillum_photometricum_DSM_122 5 5
Tistrella_mobilis_KA081020-065 4 4
Magnetospirillum_magneticum_AMB-1 1 1
Azospirillum_lipoferum_4B 2 2
Methylobacterium_chloromethanicum_CM4 6 6
Methylobacterium_extorquens_AM1 1 1
Methylobacterium_populi_BJ001 1 1
Methylobacterium_nodulans_ORS_2060 2 2
Parvibaculum_lavamentivorans_DS-1 1 1
Brucella_microti_CCM_4915 1 1
Brucella_pinnipedialis_B2/94 2 2
Brucella_canis_ATCC_23365 1 1
Brucella_suis_ATCC_23445 2 2
Brucella_melitensis_ATCC_23457 2 2
Brucella_ovis_ATCC_25840 2 2
Brucella_abortus_S19 2 2
Sinorhizobium_fredii_NGR234 2 2
Sinorhizobium_medicae_WSM419 1 1
Rhizobium_etli_CIAT_652 2 2
Agrobacterium_sp._H13-3 3 3
Beijerinckia_indica_subsp._indica_ATCC_9039 2 2
Pelagibacterium_halotolerans_B2 2 2
Rhodomicrobium_vannielii_ATCC_17100 4 4
Hyphomicrobium_sp._MC1 1 1
Oligotropha_carboxidovorans_OM4 1 1
Rhodopseudomonas_palustris_BisA53 1 1
Nitrobacter_winogradskyi_Nb-255 1 1
Nitrobacter_hamburgensis_X14 1 1
Bradyrhizobium_sp._ORS_278 2 2
Saccharophagus_degradans_2-40 1 1
Haemophilus_parasuis_SH0165 1 1
Actinobacillus_pleuropneumoniae_serovar_5b_str._L20 1 1
Vibrio_sp._Ex25 1 1
Vibrio_parahaemolyticus_RIMD_2210633 1 1
Vibrio_vulnificus_MO6-24/O 1 1
Photobacterium_profundum_SS9 1 1
Shewanella_piezotolerans_WP3 1 1
Shewanella_sediminis_HAW-EB3 1 1
Shewanella_denitrificans_OS217 3 3
Shewanella_pealeana_ATCC_700345 2 2
Shewanella_woodyi_ATCC_51908 1 1
Colwellia_psychrerythraea_34H 2 2
Marinobacter_aquaeolei_VT8 1 1
Alteromonas_sp._SN2 1 1
Marinomonas_mediterranea_MMB-1 2 2
Methylomonas_methanica_MC09 7 7
Methylococcus_capsulatus_str._Bath 1 1
Rhodanobacter_denitrificans 2 2
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Thiocystis_violascens_DSM_198 3 3
Nitrosococcus_halophilus_Nc4 2 2
Nitrosococcus_oceani_ATCC_19707 1 1
Rahnella_aquatilis_CIP_78.65_=_ATCC_33071 1 1
Yersinia_pseudotuberculosis_IP_31758 2 2
Yersinia_pestis_Pestoides_F 1 1
Dickeya_zeae_Ech1591 1 1
Pectobacterium_wasabiae_WPP163 1 1
Pectobacterium_sp._SCC3193 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1 1
Erwinia_billingiae_Eb661 1 1
Erwinia_amylovora_ATCC_49946 1 1
Pseudomonas_sp._UW4 1 1
Pseudomonas_fulva_12-X 1 1
Pseudomonas_sp._VLB120 1 1
Psychrobacter_sp._G 1 1
Thiomicrospira_crunogena_XCL-2 2 2
Methanocella_paludicola_SANAE 3 3
Methanosaeta_harundinacea_6Ac 2 2
Methanosaeta_thermophila_PT 1 1
Methanosaeta_concilii_GP6 2 2
Methanosalsum_zhilinae_DSM_4017 1 1
Methanococcoides_burtonii_DSM_6242 2 2
Methanosarcina_acetivorans_C2A 1 1
Methanosarcina_mazei_Go1 1 1
Methanosarcina_barkeri_str._Fusaro 3 3
Methanohalophilus_mahii_DSM_5219 1 1
Methanoplanus_petrolearius_DSM_11571 1 1
Methanoculleus_bourgensis_MS2 1 1
Thermococcus_gammatolerans_EJ3 1 1
Salinarchaeum_sp._Harcht-Bsk1 1 1
Halopiger_xanaduensis_SH-6 1 1
Haloterrigena_turkmenica_DSM_5511 1 1
Natrinema_sp._J7-2 1 1
Natrialba_magadii_ATCC_43099 2 2
Halorhabdus_utahensis_DSM_12940 1 1
Methanosphaera_stadtmanae_DSM_3091 1 1
Methanobrevibacter_ruminantium_M1 3 3

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   36 36
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   16 16
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   18 18
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1 1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   6 6
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   26 26
Hordeum_vulgare_22   (Domesticated barley)   3 3
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   5 5
Synechocystis_sp._PCC_6803_substr._PCC-P 1 1
Synechocystis_sp._PCC_6803_substr._PCC-N 1 1
Synechocystis_sp._PCC_6803_substr._GT-I 1 1
Synechocystis_sp._PCC_6803 1 1
Synechococcus_sp._JA-2-3B'a(2-13) 1 1
Synechococcus_sp._JA-3-3Ab 1 1
Crinalium_epipsammum_PCC_9333 1 1
Oscillatoria_nigro-viridis_PCC_7112 1 1
Cyanothece_sp._PCC_7822 7 7
Cyanothece_sp._PCC_7425 3 3
Cyanothece_sp._PCC_7424 28 20
Cyanothece_sp._ATCC_51142 1 1
Cyanothece_sp._PCC_8801 9 9
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1 1
Cylindrospermum_stagnale_PCC_7417 2 2
Frankia_sp._EuI1c 27 27
Frankia_sp._CcI3 10 10
Nocardiopsis_alba_ATCC_BAA-2165 1 1
Streptomyces_albus_J1074 1 1
Streptomyces_fulvissimus_DSM_40593 2 2
Streptomyces_venezuelae_ATCC_10712 3 3
Saccharothrix_espanaensis_DSM_44229 11 11
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_orientalis_HCCB10007 1 1
Propionibacterium_acidipropionici_ATCC_4875 1 1
Actinoplanes_friuliensis_DSM_7358 4 4
Nocardia_brasiliensis_ATCC_700358 2 2
Mycobacterium_sp._JDM601 1 1
Mycobacterium_sp._KMS 1 1
Mycobacterium_sp._MCS 1 1
Mycobacterium_gilvum_Spyr1 1 1
Mycobacterium_kansasii_ATCC_12478 1 1
Actinomyces_graevenitzii_C83_ 1 1
Actinomyces_viscosus_C505 1 1
Deinococcus_peraridilitoris_DSM_19664 1 1
Eubacterium_siraeum_V10Sc8a 1 1
Clostridium_thermocellum_DSM_1313 1 1
Ruminococcus_champanellensis_18P13 2 2
Desulfosporosinus_meridiei_DSM_13257 1 1
Desulfitobacterium_hafniense_DCB-2 1 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1 1
Coprococcus_catus_GD/7 2 2
Roseburia_intestinalis_XB6B4 1 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1 1
Enterococcus_mundtii_QU_25 1 1
Enterococcus_faecium_DO 1 1
Enterococcus_faecalis_str._Symbioflor_1 1 1
Enterococcus_faecalis_D32 2 2
Enterococcus_faecalis_V583 1 1
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 1 1
Lactobacillus_plantarum_ZJ316 1 1
Lactobacillus_brevis_KB290 1 1
Lactococcus_lactis_subsp._lactis_KF147 1 1
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 1 1
Streptococcus_mutans_GS-5 1 1
Streptococcus_mutans_LJ23 1 1
Streptococcus_mutans_UA159 1 1
Streptococcus_thermophilus_JIM_8232 1 1
Streptococcus_suis_TL13 1 1
Paenibacillus_sp._Y412MC10 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 1 1
Bacillus_cereus_FRI-35 1 1
Bacillus_cereus_AH820 1 1
Bacillus_cereus_AH187 1 1
Bacillus_cereus_G9842 1 1
Bacillus_cereus_F837/76 1 1
Bacillus_cereus_NC7401 1 1
Bacillus_cereus_ATCC_14579 1 1
Staphylococcus_aureus_subsp._aureus_MSHR1132 2 2
Staphylococcus_pasteuri_SP1 1 1
Staphylococcus_aureus_08BA02176 2 2
Staphylococcus_aureus_subsp._aureus_71193 2 2
Staphylococcus_aureus_subsp._aureus_S0385 2 2
Staphylococcus_aureus_subsp._aureus_MSSA476 1 1
Chlorobium_phaeobacteroides_BS1 1 1
Emticicia_oligotrophica_DSM_17448 1 1
Porphyromonas_gingivalis_TDC60 1 1
Porphyromonas_gingivalis_W83 2 2
Bacteroides_xylanisolvens_XB1A 2 2
Nonlabens_dokdonensis_DSW-6 2 2
Psychroflexus_torquis_ATCC_700755 2 2
Fusobacterium_nucleatum_subsp._vincentii_3_1_36A2 1 1
Arcobacter_butzleri_7h1h 1 1
Campylobacter_jejuni_Waterborne_C.jejuni_Outbreak 1 1
Helicobacter_pylori_SouthAfrica20 1 1
Helicobacter_pylori_UM298 1 1
Helicobacter_pylori_UM299 1 1
Helicobacter_pylori_UM032 1 1
Helicobacter_pylori_Rif2 1 1
Helicobacter_pylori_Rif1 1 1
Helicobacter_pylori_HUP-B14 1 1
Helicobacter_pylori_Shi112 1 1
Helicobacter_pylori_Aklavik86 1 1
Helicobacter_pylori_Puno120 1 1
Helicobacter_pylori_ELS37 1 1
Helicobacter_pylori_Gambia94/24 1 1
Helicobacter_pylori_SouthAfrica7 1 1
Helicobacter_pylori_India7 1 1
Helicobacter_pylori_F30 1 1
Helicobacter_pylori_Sat464 1 1
Helicobacter_pylori_Cuz20 1 1
Helicobacter_pylori_PeCan4 1 1
Helicobacter_pylori_SJM180 1 1
Helicobacter_pylori_G27 1 1
Helicobacter_pylori_Shi470 1 1
Helicobacter_pylori_26695 1 1
Helicobacter_pylori_26695 1 1
Desulfobacula_toluolica_Tol2 1 1
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1 1
Desulfovibrio_desulfuricans_ND132 1 1
Geobacter_sp._M18 2 2
Geobacter_sulfurreducens_PCA 3 3
Sorangium_cellulosum_So0157-2 12 12
Myxococcus_stipitatus_DSM_14675 1 1
Burkholderia_phenoliruptrix_BR3459a 1 1
Ralstonia_solanacearum_FQY_4 1 1
Ralstonia_solanacearum_GMI1000 1 1
Burkholderia_sp._YI23 1 1
Burkholderia_ambifaria_MC40-6 1 1
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 2 2
Sulfuricella_denitrificans_skB26 1 1
Caulobacter_crescentus_CB15 1 1
Zymomonas_mobilis_subsp._mobilis_ATCC_29191 1 1
Zymomonas_mobilis_subsp._mobilis_ATCC_10988 1 1
Zymomonas_mobilis_subsp._mobilis_ZM4 1 1
Octadecabacter_arcticus_238 1 1
Rhodobacter_sphaeroides_ATCC_17025 1 1
Rhodobacter_sphaeroides_2.4.1 1 1
Methylobacterium_extorquens_DM4 1 1
Methylobacterium_extorquens_PA1 1 1
Brucella_ceti_TE10759-12 2 2
Brucella_ceti_TE28753-12 2 2
Brucella_canis_HSK_A52141 1 1
Brucella_suis_VBI22 1 1
Brucella_suis_1330 1 1
Brucella_suis_1330 1 1
Brucella_melitensis_NI 2 2
Brucella_melitensis_M5-90 2 2
Brucella_melitensis_M28 2 2
Brucella_melitensis_bv._1_str._16M 2 2
Brucella_abortus_A13334 2 2
Brucella_melitensis_biovar_Abortus_2308 2 2
Brucella_abortus_bv._1_str._9-941 2 2
Sinorhizobium_fredii_USDA_257 1 1
Sinorhizobium_fredii_HH103 1 1
Mesorhizobium_australicum_WSM2073 1 1
Hyphomicrobium_denitrificans_1NES1 2 2
Oligotropha_carboxidovorans_OM5 1 1
Oligotropha_carboxidovorans_OM5 1 1
Rhodopseudomonas_palustris_DX-1 1 1
Rhodopseudomonas_palustris_TIE-1 1 1
Rhodopseudomonas_palustris_HaA2 1 1
Rhodopseudomonas_palustris_BisB5 1 1
Rhodopseudomonas_palustris_BisB18 2 2
Rhodopseudomonas_palustris_CGA009 1 1
Bradyrhizobium_sp._BTAi1 4 4
Bibersteinia_trehalosi_USDA-ARS-USMARC-192 1 1
Aggregatibacter_actinomycetemcomitans_ANH9381 1 1
Aggregatibacter_actinomycetemcomitans_D11S-1 1 1
Pasteurella_multocida_subsp._multocida_str._HN06 1 1
Vibrio_vulnificus_CMCP6 1 1
Vibrio_vulnificus_YJ016 1 1
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS223 3 3
Shewanella_sp._MR-7 1 1
Shewanella_putrefaciens_200 1 1
Xanthomonas_axonopodis_pv._citrumelo_F1 1 1
Xanthomonas_axonopodis_Xac29-1 1 1
Thioalkalivibrio_nitratireducens_DSM_14787 3 3
Thioflavicoccus_mobilis_8321 9 9
Rahnella_aquatilis_HX2 1 1
Yersinia_pseudotuberculosis_PB1/+ 1 1
Yersinia_pseudotuberculosis_YPIII 2 2
Yersinia_pestis_A1122 1 1
Yersinia_pestis_Z176003 1 1
Yersinia_pestis_D182038 1 1
Yersinia_pestis_D106004 1 1
Yersinia_pestis_biovar_Medievalis_str._Harbin_35 1 1
Yersinia_pestis_Nepal516 1 1
Yersinia_pestis_Antiqua 1 1
Yersinia_pestis_CO92 1 1
Yersinia_pestis_KIM10+ 1 1
Yersinia_enterocolitica_subsp._palearctica_105.5R(r) 1 1
Yersinia_enterocolitica_subsp._palearctica_Y11 1 1
Cronobacter_sakazakii_CMCC_45402 1 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._24249 1 1
Salmonella_enterica_subsp._enterica_serovar_Agona_str._SL483 1 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1 1
Escherichia_coli_E._coli_PMV-1 1 1
Escherichia_coli_str._'clone_D_i2' 1 1
Escherichia_coli_str._'clone_D_i14' 1 1
Escherichia_coli_IAI39 1 1
Escherichia_coli_536 1 1
Escherichia_coli_CFT073 1 1
Pseudomonas_denitrificans_ATCC_13867 1 1
Pseudomonas_syringae_pv._syringae_B728a 1 1
Pseudomonas_stutzeri_CCUG_29243 3 3
Pseudomonas_monteilii_SB3101 1 1
Pseudomonas_monteilii_SB3078 1 1
Pseudomonas_putida_DOT-T1E 2 2
Pseudomonas_putida_W619 2 2
Pseudomonas_fluorescens_F113 1 1
Pseudomonas_fluorescens_R124 1 1
Pseudomonas_aeruginosa_PA7 1 1
Acinetobacter_baumannii_BJAB0715 4 4
Acinetobacter_baumannii_D1279779 1 1
Acinetobacter_junii__SH205 1 1
Acinetobacter_johnsonii__SH046 3 3
Acinetobacter_lwoffii__SH145 3 3
Methylophaga_sp._JAM7 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Methanolobus_psychrophilus_R15 1 1
Methanosarcina_mazei_Tuc01 1 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1 1
Thermococcus_sp._CL1 1 1
Halovivax_ruber_XH-70 1 1
Natrinema_pellirubrum_DSM_15624 1 1
Methanobacterium_sp._SWAN-1 2 2

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   28 28
Pan_troglodytes_69_2.1.4   (Chimpanzee)   23 23
Gorilla_gorilla_69_3.1   (Western gorilla)   26 26
Pongo_abelii_69_2   (Sumatran orangutan)   21 21
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   24 24
Macaca_mulatta_69_1   (Rhesus monkey)   25 25
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   25 25
Otolemur_garnettii_69_3   (Small-eared galago)   23 23
Microcebus_murinus_69_1   (Gray mouse lemur)   18 18
Rattus_norvegicus_69_3.4   (Norway rat)   25 25
Mus_musculus_69_38   (House mouse)   26 26
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   18 18
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   26 26
Cavia_porcellus_69_3   (Domestic guinea pig)   27 27
Oryctolagus_cuniculus_69_2   (Rabbit)   23 23
Ochotona_princeps_69   (American pika)   17 17
Tupaia_belangeri_69   (Northern tree shrew)   15 15
Sus_scrofa_69_10.2   (Pig)   26 26
Bos_taurus_69_3.1   (Cattle)   21 21
Vicugna_pacos_69_1   (Alpaca)   18 18
Tursiops_truncatus_69_1   (Bottlenose dolphin)   19 19
Mustela_putorius_furo_69_1.0   (Domestic ferret)   22 22
Ailuropoda_melanoleuca_69_1   (Giant panda)   26 26
Canis_familiaris_69_3.1   (Dog)   27 27
Felis_catus_69   (Domestic cat)   17 17
Equus_caballus_69_2   (Horse)   24 24
Myotis_lucifugus_69_2.0   (Little brown bat)   23 23
Pteropus_vampyrus_69_1   (Large flying fox)   21 21
Sorex_araneus_69_1   (European shrew)   17 17
Erinaceus_europaeus_69   (Western European hedgehog)   20 20
Procavia_capensis_69_1   (Cape rock hyrax)   17 16
Loxodonta_africana_69_3   (African savanna elephant)   25 25
Echinops_telfairi_69   (Small Madagascar hedgehog)   17 17
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   13 13
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   17 17
Macropus_eugenii_69_1.0   (Tammar wallaby)   20 20
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   24 24
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   20 20
Ornithorhynchus_anatinus_69_5   (Platypus)   20 20
Petromyzon_marinus_69_7.0   (Sea lamprey)   15 15
Meleagris_gallopavo_69_2   (Turkey)   23 23
Gallus_gallus_69_2   (Chicken)   26 26
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   26 26
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   26 26
Anolis_carolinensis_69_2.0   (Green anole)   26 26
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   26 26
Latimeria_chalumnae_69_1   (Coelacanth)   29 29
Gadus_morhua_69_1   (Atlantic cod)   32 31
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   21 21
Takifugu_rubripes_69_4   (Torafugu)   20 20
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   20 20
Oryzias_latipes_69_1   (Japanese medaka)   18 18
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   25 25
Oreochromis_niloticus_69_1.0   (Nile tilapia)   25 25
Danio_rerio_69_9   (Zebrafish)   35 35
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   5 5
Ciona_intestinalis_69   (Vase tunicate)   13 13
Drosophila_melanogaster_69_5   (Fruit fly)   11 11
Caenorhabditis_elegans_69_215   (Roundworm)   2 2
Arabidopsis_thaliana_10   (Thale cress)   149 140

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   78 78
Homo_sapiens__(NCBI_version)   (Human)   38 38
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   26 26
Heliconius_numata__(Incomplete) 8 8
Loa_loa_v3.3_(Request)   (Eye worm)   2 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   2 2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2 2
Lotus_japonicus__(Early_assembly) 172 172
Malus_x_domestica_(Duplicate)   (Apple)   452 433
Ricinus_communis__(Early_assembly)   (Castor bean)   45 45
Nicotiana_benthamiana_0.4.4_(Early_draft) 8 8
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   39 37
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   41 39
Phoenix_dactylifera__(Early_draft)   (Date palm)   1 1
NCBI_plasmid_sequences_(Plasmids) 79 76
TargetDB__(Targets) 111 110
Protein_Data_Bank_(all_PDB_sequenc) 89 89
UniProt__viral_sequences_(Viral) 1 1
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 137 137
PDB_chains_(SCOP_1.75)_(PDB) 4 4
STRING_v9.0.5_(STRING) 2511 2413
NCBI_viral_sequences_(Viral) 2 2
Uniprot_2018_03_genome 31743 30843
NCBI_2017_08_genome 51774 50723

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