SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for Interleukin 8-like chemokines superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Interleukin 8-like chemokines domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   104 104
Pan_troglodytes_76_2.1.4   (Chimpanzee)   46 46
Gorilla_gorilla_76_3.1   (Western gorilla)   54 54
Pongo_abelii_76_2   (Sumatran orangutan)   44 44
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   46 46
Papio_anubis_76   (Olive baboon)   50 50
Macaca_mulatta_76_1   (Rhesus monkey)   52 51
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   50 50
Otolemur_garnettii_76_3   (Small-eared galago)   32 32
Microcebus_murinus_76_1   (Gray mouse lemur)   27 27
Rattus_norvegicus_76_5.0   (Norway rat)   35 35
Mus_musculus_76_38   (House mouse)   69 69
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   31 31
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   31 31
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   35 35
Cavia_porcellus_76_3   (Domestic guinea pig)   34 34
Oryctolagus_cuniculus_76_2   (Rabbit)   34 34
Ochotona_princeps_76   (American pika)   31 31
Tupaia_belangeri_76   (Northern tree shrew)   31 31
Sus_scrofa_76_10.2   (Pig)   53 53
Bos_taurus_76_3.1   (Cattle)   38 38
Ovis_aries_76_3.1   (Sheep)   41 41
Vicugna_pacos_76_1   (Alpaca)   23 23
Tursiops_truncatus_76_1   (Bottlenose dolphin)   36 36
Mustela_putorius_furo_76_1.0   (Domestic ferret)   33 33
Ailuropoda_melanoleuca_76_1   (Giant panda)   39 39
Canis_familiaris_76_3.1   (Dog)   37 37
Felis_catus_76_6.2   (Domestic cat)   29 29
Equus_caballus_76_2   (Horse)   36 36
Myotis_lucifugus_76_2.0   (Little brown bat)   44 44
Pteropus_vampyrus_76_1   (Large flying fox)   37 37
Sorex_araneus_76_1   (European shrew)   27 27
Erinaceus_europaeus_76   (Western European hedgehog)   31 31
Procavia_capensis_76_1   (Cape rock hyrax)   25 25
Loxodonta_africana_76_3   (African savanna elephant)   41 41
Echinops_telfairi_76   (Small Madagascar hedgehog)   25 25
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   49 47
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   22 22
Macropus_eugenii_76_1.0   (Tammar wallaby)   24 24
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   38 38
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   29 29
Ornithorhynchus_anatinus_76_5   (Platypus)   26 26
Meleagris_gallopavo_76_2   (Turkey)   16 16
Gallus_gallus_76_4   (Chicken)   22 22
Anas_platyrhynchos_76_1.0   (Mallard)   20 20
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   19 19
Ficedula_albicollis_76_1.0   (Collared flycatcher)   19 19
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   15 15
Anolis_carolinensis_76_2.0   (Green anole)   6 6
Xenopus_laevis_   (African clawed frog)   11 11
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   3 3
Latimeria_chalumnae_76_1   (Coelacanth)   10 10
Lepisosteus_oculatus_76   (Spotted gar)   21 21
Gadus_morhua_76_1   (Atlantic cod)   14 14
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   10 10
Takifugu_rubripes_76_4   (Torafugu)   13 13
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   18 18
Oryzias_latipes_76_1   (Japanese medaka)   15 15
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   15 15
Poecilia_formosa_76   (Amazon molly)   22 22
Oreochromis_niloticus_76_1.0   (Nile tilapia)   25 25
Astyanax_mexicanus_76   (Mexican tetra)   15 14
Danio_rerio_76_9   (Zebrafish)   47 47

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   28 28

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   53 53
Pan_troglodytes_69_2.1.4   (Chimpanzee)   45 45
Gorilla_gorilla_69_3.1   (Western gorilla)   48 48
Pongo_abelii_69_2   (Sumatran orangutan)   44 44
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   45 45
Macaca_mulatta_69_1   (Rhesus monkey)   47 46
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   38 38
Otolemur_garnettii_69_3   (Small-eared galago)   31 31
Microcebus_murinus_69_1   (Gray mouse lemur)   27 27
Rattus_norvegicus_69_3.4   (Norway rat)   34 34
Mus_musculus_69_38   (House mouse)   51 51
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   31 31
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   29 29
Cavia_porcellus_69_3   (Domestic guinea pig)   34 34
Oryctolagus_cuniculus_69_2   (Rabbit)   33 33
Ochotona_princeps_69   (American pika)   31 31
Tupaia_belangeri_69   (Northern tree shrew)   31 31
Sus_scrofa_69_10.2   (Pig)   41 41
Bos_taurus_69_3.1   (Cattle)   37 37
Vicugna_pacos_69_1   (Alpaca)   23 23
Tursiops_truncatus_69_1   (Bottlenose dolphin)   36 36
Mustela_putorius_furo_69_1.0   (Domestic ferret)   33 33
Ailuropoda_melanoleuca_69_1   (Giant panda)   37 37
Canis_familiaris_69_3.1   (Dog)   32 32
Felis_catus_69   (Domestic cat)   29 29
Equus_caballus_69_2   (Horse)   34 34
Myotis_lucifugus_69_2.0   (Little brown bat)   40 40
Pteropus_vampyrus_69_1   (Large flying fox)   37 37
Sorex_araneus_69_1   (European shrew)   27 27
Erinaceus_europaeus_69   (Western European hedgehog)   31 31
Procavia_capensis_69_1   (Cape rock hyrax)   25 25
Loxodonta_africana_69_3   (African savanna elephant)   31 31
Echinops_telfairi_69   (Small Madagascar hedgehog)   25 25
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   29 29
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   22 22
Macropus_eugenii_69_1.0   (Tammar wallaby)   24 24
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   33 33
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   29 29
Ornithorhynchus_anatinus_69_5   (Platypus)   23 23
Meleagris_gallopavo_69_2   (Turkey)   14 14
Gallus_gallus_69_2   (Chicken)   21 21
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   18 18
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   15 15
Anolis_carolinensis_69_2.0   (Green anole)   3 3
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   2 2
Latimeria_chalumnae_69_1   (Coelacanth)   8 8
Gadus_morhua_69_1   (Atlantic cod)   14 14
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   9 9
Takifugu_rubripes_69_4   (Torafugu)   8 8
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   13 13
Oryzias_latipes_69_1   (Japanese medaka)   15 15
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   15 15
Oreochromis_niloticus_69_1.0   (Nile tilapia)   22 22
Danio_rerio_69_9   (Zebrafish)   42 42

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   103 103
Homo_sapiens__(NCBI_version)   (Human)   53 53
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   49 49
STRING_v9.0.5_(STRING) 707 706
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 998 998
Uniprot_2018_03_genome 5645 5588
NCBI_2017_08_genome 9235 9149
NCBI_viral_sequences_(Viral) 41 41
PDB_chains_(SCOP_1.75)_(PDB) 51 51
TargetDB__(Targets) 19 19
UniProt__viral_sequences_(Viral) 247 247
Protein_Data_Bank_(all_PDB_sequenc) 410 410

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]