SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Chromo domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Chromo domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   150 113
Pan_troglodytes_76_2.1.4   (Chimpanzee)   49 35
Gorilla_gorilla_76_3.1   (Western gorilla)   71 49
Pongo_abelii_76_2   (Sumatran orangutan)   41 28
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   41 28
Papio_anubis_76   (Olive baboon)   47 33
Macaca_mulatta_76_1   (Rhesus monkey)   72 49
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   99 70
Otolemur_garnettii_76_3   (Small-eared galago)   52 36
Microcebus_murinus_76_1   (Gray mouse lemur)   33 23
Rattus_norvegicus_76_5.0   (Norway rat)   49 33
Mus_musculus_76_38   (House mouse)   100 70
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   34 23
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   42 30
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   53 38
Cavia_porcellus_76_3   (Domestic guinea pig)   41 29
Oryctolagus_cuniculus_76_2   (Rabbit)   50 32
Ochotona_princeps_76   (American pika)   25 19
Tupaia_belangeri_76   (Northern tree shrew)   31 22
Sus_scrofa_76_10.2   (Pig)   49 33
Bos_taurus_76_3.1   (Cattle)   43 31
Ovis_aries_76_3.1   (Sheep)   52 35
Vicugna_pacos_76_1   (Alpaca)   20 15
Tursiops_truncatus_76_1   (Bottlenose dolphin)   35 25
Mustela_putorius_furo_76_1.0   (Domestic ferret)   44 29
Ailuropoda_melanoleuca_76_1   (Giant panda)   45 32
Canis_familiaris_76_3.1   (Dog)   62 40
Felis_catus_76_6.2   (Domestic cat)   47 33
Equus_caballus_76_2   (Horse)   47 31
Myotis_lucifugus_76_2.0   (Little brown bat)   37 26
Pteropus_vampyrus_76_1   (Large flying fox)   35 25
Sorex_araneus_76_1   (European shrew)   27 18
Erinaceus_europaeus_76   (Western European hedgehog)   26 19
Procavia_capensis_76_1   (Cape rock hyrax)   32 22
Loxodonta_africana_76_3   (African savanna elephant)   58 37
Echinops_telfairi_76   (Small Madagascar hedgehog)   31 22
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   51 34
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   25 17
Macropus_eugenii_76_1.0   (Tammar wallaby)   24 18
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   59 44
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   50 39
Ornithorhynchus_anatinus_76_5   (Platypus)   27 19
Saccoglossus_kowalevskii_v3.0 106 75
Petromyzon_marinus_76_7.0   (Sea lamprey)   18 12
Meleagris_gallopavo_76_2   (Turkey)   29 20
Gallus_gallus_76_4   (Chicken)   36 25
Anas_platyrhynchos_76_1.0   (Mallard)   33 22
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   32 23
Ficedula_albicollis_76_1.0   (Collared flycatcher)   31 20
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   37 26
Anolis_carolinensis_76_2.0   (Green anole)   56 45
Xenopus_laevis_   (African clawed frog)   64 49
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   53 38
Latimeria_chalumnae_76_1   (Coelacanth)   41 30
Lepisosteus_oculatus_76   (Spotted gar)   51 34
Gadus_morhua_76_1   (Atlantic cod)   45 33
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   64 43
Takifugu_rubripes_76_4   (Torafugu)   139 91
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   60 44
Oryzias_latipes_76_1   (Japanese medaka)   68 52
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   50 35
Poecilia_formosa_76   (Amazon molly)   50 35
Oreochromis_niloticus_76_1.0   (Nile tilapia)   66 45
Astyanax_mexicanus_76   (Mexican tetra)   48 35
Danio_rerio_76_9   (Zebrafish)   101 71
Oikopleura_dioica 49 37
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   42 32
Ciona_intestinalis_76   (Vase tunicate)   11 9
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   27 23
Adineta_vaga 76 51
Octopus_bimaculoides_280 40 27
Crassostrea_gigas_22   (Pacific oyster)   18 14
Lottia_gigantea_   (Owl limpet)   14 12
Helobdella_robusta_ 15 11
Capitella_sp._I_ 19 15
Danaus_plexippus_OGS1.0   (Monarch butterfly)   23 16
Heliconius_melpomene_   (Postman butterfly)   21 15
Bombyx_mori_   (Domestic silkworm)   18 13
Nasonia_vitripennis_   (Jewel wasp)   54 49
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   32 22
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   24 19
Linepithema_humile_v1.1   (Argentine ant)   15 11
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   14 12
Solenopsis_invicta_v.2.2.3   (Red fire ant)   12 10
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   24 17
Atta_cephalotes_v1.1 18 15
Camponotus_floridanus_v3.3   (Florida carpenter ant)   20 15
Lucilia_cuprina   (Australian sheep blowfly)   12 10
Drosophila_grimshawi_1.3 28 20
Drosophila_willistoni_1.3 34 25
Drosophila_pseudoobscura_2.13 32 24
Drosophila_persimilis_1.3 28 23
Drosophila_suzukii 33 23
Drosophila_yakuba_1.3 34 25
Drosophila_simulans_1.3 26 20
Drosophila_sechellia_1.3 26 20
Drosophila_melanogaster_76_5   (Fruit fly)   63 42
Drosophila_erecta_1.3 31 23
Drosophila_ananassae_1.3 31 23
Drosophila_virilis_1.2 31 22
Drosophila_mojavensis_1.3 28 20
Megaselia_scalaris_22 6 5
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   23 16
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   29 20
Anopheles_darlingi_22   (American malaria mosquito)   14 10
Anopheles_gambiae_49_3j   (African malaria mosquito)   18 13
Tribolium_castaneum_3.0   (Red flour beetle)   33 26
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   17 14
Acyrthosiphon_pisum_   (Pea aphid)   29 22
Rhodnius_prolixus_22 17 13
Daphnia_pulex_   (Common water flea)   46 42
Strigamia_maritima_22 22 20
Sarcoptes_scabiei 15 12
Tetranychus_urticae_   (Two-spotted spider mite)   42 27
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   14 10
Pristionchus_pacificus_ 45 42
Meloidogyne_incognita_   (Southern root-knot nematode)   62 47
Meloidogyne_hapla_ 41 36
Onchocerca_volvulus_22 24 18
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   36 28
Caenorhabditis_japonica_ 30 24
Caenorhabditis_brenneri_ 80 67
Caenorhabditis_remanei_ 82 74
Caenorhabditis_elegans_76_235   (Roundworm)   40 28
Caenorhabditis_briggsae_2 60 51
Trichinella_spiralis_22 17 13
Hymenolepis_microstoma_ 21 14
Echinococcus_multilocularis_ 19 13
Echinococcus_granulosus_ 18 12
Taenia_solium_   (Pork tapeworm)   20 14
Schistosoma_mansoni_ 22 15
Mnemiopsis_leidyi   (Sea walnut)   19 16
Thelohanellus_kitauei 8 6
Acropora_digitifera_v1.0 23 20
Nematostella_vectensis_1.0   (Starlet sea anemone)   25 21
Hydra_vulgaris 32 29
Amphimedon_queenslandica 23 20
Trichoplax_adhaerens_ 15 11
Proterospongia_sp._ATCC_50818_ 19 17
Monosiga_brevicollis_ 11 9
Sphaeroforma_arctica_JP610_ 21 19
Capsaspora_owczarzaki_ATCC_30864_ 20 15
Conidiobolus_coronatus_NRRL28638_v1.0 17 13
Mortierella_verticillata_NRRL_6337_ 29 25
Phycomyces_blakesleeanus_ 25 19
Rhizopus_oryzae_RA_99-880_ 255 247
Mucor_circinelloides_ 25 19
Rhizomucor_miehei_CAU432_ 27 21
Malassezia_globosa_CBS_7966_ 12 8
Sporisorium_reilianum_22 14 10
Ustilago_maydis_ 6 5
Mixia_osmundae_IAM_14324_v1.0 3 3
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 17 15
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 16 15
Melampsora_laricis-populina_ 10 8
Rhodotorula_graminis_WP1_v1.0 8 6
Sporobolomyces_roseus_IAM_13481_ 8 6
Microbotryum_violaceum_22 11 10
Wallemia_sebi_v1.0 6 5
Sphaerobolus_stellatus_v1.0 52 49
Piloderma_croceum_F_1598_v1.0 24 22
Serpula_lacrymans_var._lacrymans_S7.9_ 17 16
Coniophora_puteana 14 13
Hydnomerulius_pinastri_v2.0 15 13
Paxillus_rubicundulus_Ve08.2h10_v1.0 19 17
Pisolithus_microcarpus_441_v1.0 25 24
Pisolithus_tinctorius_Marx_270_v1.0 58 56
Scleroderma_citrinum_Foug_A_v1.0 94 92
Coprinopsis_cinerea_okayama7_130_v3 14 12
Pleurotus_ostreatus_   (Oyster mushroom)   15 13
Amanita_thiersii_Skay4041_v1.0 26 24
Amanita_muscaria_Koide_v1.0   (Fly agaric)   30 29
Galerina_marginata_v1.0 21 20
Hebeloma_cylindrosporum_h7_v2.0 16 14
Laccaria_bicolor_S238N-H82_ 24 22
Agaricus_bisporus_var._bisporus_ 18 16
Schizophyllum_commune_ 18 17
Stereum_hirsutum_FP-91666_SS1__v1.0 18 16
Heterobasidion_annosum_ 18 16
Gloeophyllum_trabeumv1.0 21 19
Punctularia_strigosozonata_v1.0 34 32
Sebacina_vermifera_MAFF_305830_v1.0 9 8
Fomitiporia_mediterranea_v1.0 16 14
Tulasnella_calospora_AL13/4D_v1.0 18 16
Postia_placenta_ 11 10
Wolfiporia_cocos_MD-104_SS10__v1.0 18 15
Fomitopsis_pinicolav1.0 27 25
Fomitopsis_pinicola_FP-58527_SS1_v3.0 20 18
Phanerochaete_chrysosporium_RP-78_2.1 81 80
Dichomitus_squalens 15 13
Trametes_versicolor_v1.0 18 16
Tremella_mesenterica_   (Witches' butter)   31 29
Daldinia_eschscholzii_EC12_v1.0 14 11
Apiospora_montagnei_NRRL_25634_v1.0 15 12
Magnaporthe_poae_ATCC_64411_22 14 12
Magnaporthe_grisea_70-15_ 17 14
Podospora_anserina_ 14 13
Sporotrichum_thermophile_ATCC_42464_ 12 10
Thielavia_terrestris_NRRL_8126_ 11 9
Chaetomium_globosum_CBS_148.51_ 32 31
Neurospora_tetrasperma_ 13 11
Neurospora_discreta_FGSC_8579_ 13 11
Neurospora_crassa_OR74A_ 15 13
Cryphonectria_parasitica_   (Chestnut blight fungus)   13 11
Verticillium_albo-atrum_VaMs.102_ 10 9
Verticillium_dahliae_VdLs.17_ 13 12
Acremonium_alcalophilumv_1.0 13 10
Glomerella_graminicola_22 18 15
Fusarium_graminearum_ 13 11
Nectria_haematococca_mpVI_ 20 15
Fusarium_oxysporum_f._sp._lycopersici_4286_ 40 27
Fusarium_verticillioides_7600_ 18 14
Trichoderma_asperellum_CBS_433.97_v1.0 14 11
Trichoderma_atroviride_ 12 9
Trichoderma_citrinoviride_v1.0 13 10
Trichoderma_reesei_1.2 12 9
Trichoderma_virens_Gv29-8_ 11 9
Trichoderma_longibrachiatum_ATCC_18648_v1.0 13 10
Trichoderma_harzianum_CBS_226.95_v1.0 13 11
Amorphotheca_resinae_v1.0   (Creosote fungus)   13 11
Botrytis_cinerea_B05.10_ 24 21
Sclerotinia_sclerotiorum_ 30 27
Blumeria_graminis_22 11 10
Didymella_exigua_CBS_183.55_v1.0 10 8
Leptosphaeria_maculans_22 11 9
Setosphaeria_turcica_v1.0 16 13
Cochliobolus_miyabeanus_ATCC_44560_v1.0 10 8
Cochliobolus_victoriae_FI3_v1.0 12 10
Cochliobolus_carbonum_26-R-13_v1.0 10 8
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   9 7
Alternaria_brassicicola_ 11 9
Cochliobolus_lunatus_m118_v2.0 12 10
Pyrenophora_teres_f._teres_22 19 17
Pyrenophora_tritici-repentis_ 12 10
Stagonospora_nodorum_ 11 10
Mycosphaerella_graminicola_IPO323_ 11 9
Zasmidium_cellare_ATCC_36951_v1.0 14 11
Dothistroma_septosporum 11 8
Septoria_musiva_v1.0 11 8
Mycosphaerella_fijiensis_CIRAD86_ 7 6
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 11 9
Paracoccidioides_brasiliensis_Pb18_ 9 8
Coccidioides_posadasii_RMSCC_3488_ 12 9
Coccidioides_immitis_RS_ 15 13
Ajellomyces_dermatitidis_SLH14081_ 12 10
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 16 11
Microsporum_canis_CBS_113480_ 9 7
Trichophyton_equinum_CBS_127.97_ 8 7
Trichophyton_verrucosum_HKI_0517_ 11 9
Arthroderma_benhamiae_CBS_112371_ 10 8
Trichophyton_tonsurans_CBS_112818_ 9 7
Trichophyton_rubrum_CBS_118892_ 9 7
Uncinocarpus_reesii_1704_ 9 8
Aspergillus_zonatus_v1.0 10 7
Penicillium_chrysogenum_Wisconsin_54-1255_ 12 10
Penicillium_chrysogenum_v1.0 11 9
Aspergillus_acidus_v1.0 11 8
Aspergillus_fumigatus_Af293 12 10
Aspergillus_brasiliensis_v1.0 12 9
Aspergillus_nidulans_FGSC_A4_ 9 7
Aspergillus_sydowii_v1.0 10 8
Aspergillus_versicolor_v1.0 10 8
Aspergillus_glaucus 11 8
Aspergillus_carbonarius_ITEM_5010_ 11 8
Neosartorya_fischeri_NRRL_181_ 11 9
Aspergillus_terreus_NIH2624_ 9 7
Aspergillus_tubingensis_v1.0 11 8
Aspergillus_wentii_v1.0 10 8
Aspergillus_oryzae_RIB40_ 8 7
Aspergillus_niger_22 9 7
Aspergillus_niger_ATCC_1015_ 6 4
Aspergillus_flavus_NRRL3357_ 9 7
Aspergillus_clavatus_NRRL_1_ 10 8
Penicillium_marneffei_ATCC_18224_ 20 17
Tuber_melanosporum_Mel28_22 9 7
Tuber_melanosporum_Vittad_   (Perigord truffle)   236 234
Hansenula_polymorpha_v2.0 4 3
Dekkera_bruxellensis_CBS_2499_v2.0 5 4
Pichia_membranifaciensv1.0 5 4
Candida_tanzawaensis_NRRL_Y-17324__v1.0 5 4
Candida_dubliniensis_CD36_ 4 3
Candida_tropicalis_MYA-3404_ 3 2
Candida_parapsilosis_ 4 3
Candida_albicans_SC5314 5 4
Lodderomyces_elongisporus_NRRL_YB-4239_ 4 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 5 4
Pichia_stipitis_CBS_6054_ 3 2
Candida_guilliermondii_ATCC_6260_ 4 3
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3 2
Debaromyces_hansenii 4 3
Wickerhamomyces_anomalus 4 3
Pichia_pastoris_GS115_ 4 3
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 6 4
Yarrowia_lipolytica_CLIB122 4 3
Candida_lusitaniae_ATCC_42720_ 4 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 4 3
Vanderwaltozyma_polyspora_DSM_70294_ 4 3
Candida_glabrata_CBS138 4 3
Kluyveromyces_thermotolerans_CBS_6340 4 3
Lachancea_kluyveri_ 4 3
Kluyveromyces_waltii 4 3
Ashbya_gossypii_ATCC_10895_ 5 4
Zygosaccharomyces_rouxii_ 4 3
Saccharomyces_mikatae_MIT 4 3
Saccharomyces_paradoxus_MIT 4 3
Saccharomyces_cerevisiae_76   (Baker's yeast)   4 3
Saccharomyces_bayanus_MIT 5 4
Kluyveromyces_lactis 5 4
Schizosaccharomyces_cryophilus_OY26_22 13 9
Schizosaccharomyces_octosporus_yFS286_ 13 9
Schizosaccharomyces_japonicus_yFS275_ 16 12
Schizosaccharomyces_pombe   (Fission yeast)   13 9
Catenaria_anguillulae_PL171_v1.0 22 19
Allomyces_macrogynus_ATCC_38327_ 31 21
Spizellomyces_punctatus_DAOM_BR117_ 41 35
Dictyostelium_discoideum 23 18
Dictyostelium_purpureum_ 29 27
Entamoeba_dispar_1.2 12 10
Entamoeba_invadens_1.2 10 7
Entamoeba_histolytica_1 11 9
Selaginella_moellendorffii_ 31 22
Pinus_taeda   (Loblolly pine)   13 9
Picea_abies   (Norway spruce)   3 2
Eucalyptus_grandis_v201   (Rose gum)   36 22
Theobroma_cacao_B97-61/B2_v1   (Cacao)   224 217
Gossypium_raimondii_v221 107 66
Citrus_clementina_v165 18 12
Citrus_sinensis_v154   (Sweet orange)   49 31
Thellungiella_halophila_v173 25 16
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   27 19
Capsella_rubella_v183 22 16
Arabidopsis_lyrata_   (Lyrate rockcress)   21 15
Arabidopsis_thaliana_10   (Thale cress)   23 17
Carica_papaya_   (Papaya)   22 17
Medicago_truncatula_   (Barrel medic)   54 35
Phaseolus_vulgaris_v186   (French bean)   29 21
Glycine_max_v109   (Soybean)   53 42
Cucumis_sativus_v122   (Cucumber)   51 39
Fragaria_vesca_   (Wild strawberry)   27 22
Malus_domestica_v196   (Apple)   25 23
Prunus_persica_v139   (Peach)   34 28
Linum_usitatissimum_v200   (Flax)   34 24
Manihot_esculenta_v147   (Cassava)   33 24
Populus_trichocarpa_v156   (Black cottonwood)   31 22
Vitis_vinifera_   (Wine grape)   15 12
Mimulus_guttatus_v140   (Spotted monkey flower)   23 16
Solanum_lycopersicum_v.2.3   (Tomato)   31 23
Solanum_tuberosum_   (Potato)   22 19
Actinidia_chinensis_Hongyang_ 33 24
Aquilegia_coerulea_v195 60 41
Triticum_urartu_22 17 12
Triticum_aestivum_22   (Bread wheat)   63 50
Aegilops_tauschii_22 19 13
Brachypodium_distachyon_   (Stiff brome)   34 24
Oryza_barthii_22   (African wild rice)   47 32
Oryza_meridionalis_22 43 27
Oryza_glumaepatula_22 34 25
Oryza_glaberrima   (African rice)   21 14
Oryza_punctata_22 32 20
Oryza_nivara_22 47 30
Oryza_brachyantha_22   (Malo sina)   19 13
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   819 812
Oryza_sativa_v193   (Rice)   822 815
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   44 35
Panicum_virgatum_v202   (Switchgrass)   41 27
Setaria_italica_v164   (Foxtail millet)   22 14
Zea_mays_subsp._mays_   (Maize)   29 24
Zea_mays_v181   (Maize)   27 21
Sorghum_bicolor_   (Sorghum)   24 21
Musa_balbisiana   (Balbis banana)   153 146
Musa_acuminata_22   (Wild Malaysian banana)   19 14
Amborella_trichopoda_22 20 13
Physcomitrella_patens 46 35
Coccomyxa_subellipsoidea_sp._C-169_v2 10 8
Asterochloris_sp._Cgr/DA1pho_v1.0 8 7
Chlorella_variabilis_sp._NC64A_ 16 15
Chlorella_vulgaris_ 12 9
Volvox_carteri_f._nagariensis_ 13 8
Volvox_carteri_v199 14 9
Chlamydomonas_reinhardtii_4.0 13 9
Ostreococcus_sp._RCC809_ 6 5
Ostreococcus_lucimarinus_CCE9901_ 10 8
Ostreococcus_tauri_ 5 4
Bathycoccus_prasinos_ 11 9
Micromonas_sp._RCC299_ 8 7
Micromonas_pusilla_CCMP1545_v3.0 13 11
Cyanidioschyzon_merolae_strain_10D_22 4 3
Cyanidioschyzon_merolae 4 3
Porphyridium_purpureum_02_2012 11 9
Thecamonas_trahens_ATCC_50062_ 8 8
Bigelowiella_natans_CCMP2755_22 50 44
Giardia_lamblia_2.3 3 3
Cyanophora_paradoxa_ 20 18
Leishmania_mexicana_2.4 2 2
Leishmania_major_strain_Friedlin_ 2 2
Leishmania_infantum_JPCM5_2.4 2 2
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 2 2
Trypanosoma_vivax_ 1 1
Trypanosoma_cruzi_strain_CL_Brener 2 2
Trypanosoma_brucei_gambiense_v4.1 1 1
Trypanosoma_brucei_TREU927_v4.1 1 1
Ectocarpus_siliculosus 21 17
Aureococcus_anophagefferens_ 6 6
Albugo_laibachii_22 40 35
Pythium_iwayamai_DAOM_BR242034_22 29 25
Pythium_arrhenomanes_ATCC_12531_22 38 33
Pythium_ultimum_v1.7-2 58 54
Pythium_aphanidermatum_DAOM_BR444_22 24 19
Pythium_irregulare_DAOM_BR486_22 24 19
Pythium_vexans_DAOM_BR484_22 28 23
Phytophthora_ramorum_1.1   (Sudden oak death agent)   101 94
Phytophthora_sojae_1.1 165 159
Phytophthora_infestans_T30-4_ 84 79
Phytophthora_capsici_ 82 76
Hyaloperonospora_arabidopsidis_22 34 32
Phaeodactylum_tricornutumCCAP_1055/1 8 8
Fragilariopsis_cylindrus 7 7
Thalassiosira_pseudonana_CCMP1335 17 12
Perkinsus_marinus_ATCC_50983_ 25 24
Paramecium_tetraurelia_ 51 48
Tetrahymena_thermophila_SB210_1_ 24 19
Ichthyophthirius_multifiliis_strain_G5_ 7 6
Cryptosporidium_hominis 7 5
Cryptosporidium_muris 7 5
Cryptosporidium_parvum_Iowa_II 7 5
Neospora_caninum 6 5
Toxoplasma_gondii_VEG 5 4
Toxoplasma_gondii_ME49 6 5
Toxoplasma_gondii_GT1 6 5
Babesia_bovis_T2Bo_ 10 6
Theileria_parva__ 5 3
Theileria_annulata 5 3
Plasmodium_falciparum_3D7_ 5 4
Plasmodium_vivax_SaI-1_7.0 4 3
Plasmodium_knowlesi_strain_H_ 5 4
Plasmodium_yoelii_ssp._yoelii_1_ 5 4
Plasmodium_chabaudi_ 5 4
Plasmodium_berghei_ANKA_ 5 4
Symbiodinium_minutum_clade_B1_v1.2 16 13
Naegleria_gruberi_ 12 10
Trichomonas_vaginalis_ 96 73
Guillardia_theta_CCMP2712_v1.0_ 32 27
Emiliania_huxleyi_CCMP1516_ 114 109
Acaryochloris_marina_MBIC11017 3 2
Microcoleus_sp._PCC_7113 2 1
Calothrix_sp._PCC_7507 2 1
Anabaena_variabilis_ATCC_29413 2 1
Nostoc_sp._PCC_7107 2 1
Nostoc_punctiforme_PCC_73102 4 2
Nostoc_sp._PCC_7120 2 1
Leadbetterella_byssophila_DSM_17132 1 1
Runella_slithyformis_DSM_19594 1 1
Pedobacter_saltans_DSM_12145 1 1
Planctomyces_limnophilus_DSM_3776 2 1
Rhodopirellula_baltica_SH_1 1 1
Pirellula_staleyi_DSM_6068 1 1
Sorangium_cellulosum_'So_ce_56' 3 2
Rhodospirillum_photometricum_DSM_122 1 1
Magnetospirillum_magneticum_AMB-1 3 2
Azospirillum_lipoferum_4B 1 1
Metallosphaera_cuprina_Ar-4 1 1
Metallosphaera_sedula_DSM_5348 1 1
Acidianus_hospitalis_W1 3 3
Sulfolobus_tokodaii_str._7 2 2
Sulfolobus_islandicus_Y.N.15.51 2 2
Sulfolobus_solfataricus_P2 3 3
Sulfolobus_acidocaldarius_DSM_639 2 2

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   124 103
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   44 30
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   18 13
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   33 27
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   36 24
Cryptococcus_neoformans_var._grubii_H99_ 11 10
Cryptococcus_neoformans_B-3501A_ 16 14
Cryptococcus_neoformans_JEC21_ 13 12
Paracoccidioides_brasiliensis_Pb01_ 12 11
Paracoccidioides_brasiliensis_Pb03_ 10 9
Coccidioides_posadasii_str._Silveira_ 11 9
Coccidioides_immitis_RMSCC_3703_ 11 9
Coccidioides_immitis_RMSCC_2394_ 11 9
Coccidioides_immitis_H538.4_ 10 8
Ajellomyces_dermatitidis_ER-3_ 11 9
Histoplasma_capsulatum_H143 9 7
Histoplasma_capsulatum_H88 12 10
Histoplasma_capsulatum_G186AR 12 10
Aspergillus_fumigatus_A1163_ 11 9
Candida_albicans_WO-1_ 5 4
Saccharomyces_cerevisiae_UC5 4 3
Saccharomyces_cerevisiae_PW5 4 3
Saccharomyces_cerevisiae_FL100 2 1
Saccharomyces_cerevisiae_CLIB324 2 2
Saccharomyces_cerevisiae_CBS7960 1 1
Saccharomyces_cerevisiae_YJM269 1 1
Saccharomyces_cerevisiae_T7 4 3
Saccharomyces_cerevisiae_FostersB 4 3
Saccharomyces_cerevisiae_FostersO 4 3
Saccharomyces_cerevisiae_VL3 3 2
Saccharomyces_cerevisiae_Vin13 4 3
Saccharomyces_cerevisiae_LalvinQA23 3 2
Saccharomyces_cerevisiae_AWRI796 3 2
Saccharomyces_cerevisiae_Sigma1278b 4 3
Saccharomyces_cerevisiae_W303 4 3
Saccharomyces_cerevisiae_JAY291 4 3
Saccharomyces_cerevisiae_AWRI1631 1 1
Saccharomyces_cerevisiae_T73 3 2
Saccharomyces_cerevisiae_CLIB215 2 2
Saccharomyces_cerevisiae_YJM789_ 4 3
Saccharomyces_cerevisiae_YJM789 4 3
Saccharomyces_cerevisiae_RM11-1a 2 2
Saccharomyces_cerevisiae_RM11-1a_ 3 3
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   4 3
Schizosaccharomyces_pombe_972h-_ 13 9
Batrachochytrium_dendrobatidis_JEL423_ 16 13
Batrachochytrium_dendrobatidis_JAM81_ 16 10
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   188 182
Hordeum_vulgare_22   (Domesticated barley)   48 35
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   127 119
Trypanosoma_brucei_Lister_427_v4.1 1 1
Neospora_caninum_Nc-Liverpool_6.2 6 5
Plasmodium_falciparum_HB3_ 5 4
Plasmodium_falciparum_Dd2_ 3 2
Oscillatoria_acuminata_PCC_6304 2 1
Stanieria_cyanosphaera_PCC_7437 2 1
Calothrix_parietina_Calothrix_sp._PCC_6303 4 2
Cylindrospermum_stagnale_PCC_7417 1 1
Anabaena_cylindrica_PCC_7122 2 1
Emticicia_oligotrophica_DSM_17448 1 1
Sorangium_cellulosum_So0157-2 3 2
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Sulfolobus_islandicus_LAL14/1 2 2
Sulfolobus_islandicus_REY15A 2 2
Sulfolobus_islandicus_HVE10/4 2 2
Sulfolobus_islandicus_Y.G.57.14 2 2
Sulfolobus_islandicus_L.S.2.15 2 2
Sulfolobus_islandicus_M.16.27 2 2
Sulfolobus_islandicus_M.14.25 2 2
Sulfolobus_islandicus_M.16.4 2 2
Sulfolobus_islandicus_L.D.8.5 2 2
Sulfolobus_solfataricus_98/2 2 2
Sulfolobus_acidocaldarius_SUSAZ 2 2
Sulfolobus_acidocaldarius_Ron12/I 2 2
Sulfolobus_acidocaldarius_N8 2 2

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   46 34
Pan_troglodytes_69_2.1.4   (Chimpanzee)   44 32
Gorilla_gorilla_69_3.1   (Western gorilla)   42 29
Pongo_abelii_69_2   (Sumatran orangutan)   41 28
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   38 26
Macaca_mulatta_69_1   (Rhesus monkey)   44 31
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   53 36
Otolemur_garnettii_69_3   (Small-eared galago)   51 35
Microcebus_murinus_69_1   (Gray mouse lemur)   33 23
Rattus_norvegicus_69_3.4   (Norway rat)   49 33
Mus_musculus_69_38   (House mouse)   45 31
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   34 23
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   38 28
Cavia_porcellus_69_3   (Domestic guinea pig)   40 28
Oryctolagus_cuniculus_69_2   (Rabbit)   48 31
Ochotona_princeps_69   (American pika)   25 19
Tupaia_belangeri_69   (Northern tree shrew)   31 22
Sus_scrofa_69_10.2   (Pig)   36 25
Bos_taurus_69_3.1   (Cattle)   42 30
Vicugna_pacos_69_1   (Alpaca)   20 15
Tursiops_truncatus_69_1   (Bottlenose dolphin)   35 25
Mustela_putorius_furo_69_1.0   (Domestic ferret)   44 29
Ailuropoda_melanoleuca_69_1   (Giant panda)   41 29
Canis_familiaris_69_3.1   (Dog)   45 30
Felis_catus_69   (Domestic cat)   29 22
Equus_caballus_69_2   (Horse)   39 27
Myotis_lucifugus_69_2.0   (Little brown bat)   36 25
Pteropus_vampyrus_69_1   (Large flying fox)   35 25
Sorex_araneus_69_1   (European shrew)   27 18
Erinaceus_europaeus_69   (Western European hedgehog)   26 19
Procavia_capensis_69_1   (Cape rock hyrax)   32 22
Loxodonta_africana_69_3   (African savanna elephant)   39 26
Echinops_telfairi_69   (Small Madagascar hedgehog)   31 22
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   24 20
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   25 17
Macropus_eugenii_69_1.0   (Tammar wallaby)   24 18
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   49 36
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   48 37
Ornithorhynchus_anatinus_69_5   (Platypus)   24 17
Petromyzon_marinus_69_7.0   (Sea lamprey)   16 11
Meleagris_gallopavo_69_2   (Turkey)   27 18
Gallus_gallus_69_2   (Chicken)   30 20
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   32 23
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   33 23
Anolis_carolinensis_69_2.0   (Green anole)   38 27
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   41 30
Latimeria_chalumnae_69_1   (Coelacanth)   37 26
Gadus_morhua_69_1   (Atlantic cod)   45 33
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   48 34
Takifugu_rubripes_69_4   (Torafugu)   48 34
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   49 35
Oryzias_latipes_69_1   (Japanese medaka)   57 43
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   48 34
Oreochromis_niloticus_69_1.0   (Nile tilapia)   50 35
Danio_rerio_69_9   (Zebrafish)   48 35
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   13 11
Ciona_intestinalis_69   (Vase tunicate)   11 9
Drosophila_melanogaster_69_5   (Fruit fly)   32 23
Caenorhabditis_elegans_69_215   (Roundworm)   28 20
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   4 3
Arabidopsis_thaliana_10   (Thale cress)   20 14

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   159 121
Homo_sapiens__(NCBI_version)   (Human)   77 57
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   47 32
Heliconius_numata__(Incomplete) 10 7
Loa_loa_v3.3_(Request)   (Eye worm)   26 21
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   25 21
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   22 17
Moniliophthora_perniciosa_FA553__(Genome_survey) 43 42
Encephalitozoon_intestinalis__(endoparasite) 5 3
Encephalitozoon_cuniculi_(endoparasite) 5 3
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Lotus_japonicus__(Early_assembly) 16 13
Malus_x_domestica_(Duplicate)   (Apple)   25 23
Ricinus_communis__(Early_assembly)   (Castor bean)   17 13
Nicotiana_benthamiana_0.4.4_(Early_draft) 43 32
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   31 23
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   31 23
Phoenix_dactylifera__(Early_draft)   (Date palm)   18 15
TargetDB__(Targets) 107 86
Protein_Data_Bank_(all_PDB_sequenc) 321 296
Protozoadb_2010_08_(Protozoadb) 367 286
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 651 651
PDB_chains_(SCOP_1.75)_(PDB) 35 33
STRING_v9.0.5_(STRING) 3916 3248
NCBI_2017_08_genome 38108 26465
NCBI_viral_sequences_(Viral) 1 1
Uniprot_2018_03_genome 41254 32692

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