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Domain combinations for DNA-binding domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a DNA-binding domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   56 56
Pan_troglodytes_76_2.1.4   (Chimpanzee)   11 11
Gorilla_gorilla_76_3.1   (Western gorilla)   17 17
Pongo_abelii_76_2   (Sumatran orangutan)   12 12
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   10 10
Papio_anubis_76   (Olive baboon)   13 13
Macaca_mulatta_76_1   (Rhesus monkey)   24 24
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   28 28
Otolemur_garnettii_76_3   (Small-eared galago)   11 11
Microcebus_murinus_76_1   (Gray mouse lemur)   8 8
Rattus_norvegicus_76_5.0   (Norway rat)   12 12
Mus_musculus_76_38   (House mouse)   27 27
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   7 7
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   11 11
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   10 10
Cavia_porcellus_76_3   (Domestic guinea pig)   11 11
Oryctolagus_cuniculus_76_2   (Rabbit)   10 10
Ochotona_princeps_76   (American pika)   9 9
Tupaia_belangeri_76   (Northern tree shrew)   9 9
Sus_scrofa_76_10.2   (Pig)   13 13
Bos_taurus_76_3.1   (Cattle)   12 12
Ovis_aries_76_3.1   (Sheep)   13 13
Vicugna_pacos_76_1   (Alpaca)   7 7
Tursiops_truncatus_76_1   (Bottlenose dolphin)   11 11
Mustela_putorius_furo_76_1.0   (Domestic ferret)   10 10
Ailuropoda_melanoleuca_76_1   (Giant panda)   11 11
Canis_familiaris_76_3.1   (Dog)   16 16
Felis_catus_76_6.2   (Domestic cat)   10 10
Equus_caballus_76_2   (Horse)   13 13
Myotis_lucifugus_76_2.0   (Little brown bat)   9 9
Pteropus_vampyrus_76_1   (Large flying fox)   10 10
Sorex_araneus_76_1   (European shrew)   6 6
Erinaceus_europaeus_76   (Western European hedgehog)   8 8
Procavia_capensis_76_1   (Cape rock hyrax)   8 8
Loxodonta_africana_76_3   (African savanna elephant)   14 14
Echinops_telfairi_76   (Small Madagascar hedgehog)   8 8
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   16 16
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   6 6
Macropus_eugenii_76_1.0   (Tammar wallaby)   10 10
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   15 15
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   13 13
Ornithorhynchus_anatinus_76_5   (Platypus)   9 9
Saccoglossus_kowalevskii_v3.0 11 11
Petromyzon_marinus_76_7.0   (Sea lamprey)   5 5
Meleagris_gallopavo_76_2   (Turkey)   7 7
Gallus_gallus_76_4   (Chicken)   6 6
Anas_platyrhynchos_76_1.0   (Mallard)   6 6
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   5 5
Ficedula_albicollis_76_1.0   (Collared flycatcher)   4 4
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   5 5
Anolis_carolinensis_76_2.0   (Green anole)   10 10
Xenopus_laevis_   (African clawed frog)   28 28
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   17 17
Latimeria_chalumnae_76_1   (Coelacanth)   14 14
Lepisosteus_oculatus_76   (Spotted gar)   11 11
Gadus_morhua_76_1   (Atlantic cod)   9 9
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   10 10
Takifugu_rubripes_76_4   (Torafugu)   29 29
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   12 12
Oryzias_latipes_76_1   (Japanese medaka)   11 11
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   10 10
Poecilia_formosa_76   (Amazon molly)   11 11
Oreochromis_niloticus_76_1.0   (Nile tilapia)   18 18
Astyanax_mexicanus_76   (Mexican tetra)   13 13
Danio_rerio_76_9   (Zebrafish)   18 18
Ciona_intestinalis_76   (Vase tunicate)   2 2
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   5 5
Adineta_vaga 10 10
Octopus_bimaculoides_280 6 6
Crassostrea_gigas_22   (Pacific oyster)   4 4
Lottia_gigantea_   (Owl limpet)   6 5
Helobdella_robusta_ 4 4
Capitella_sp._I_ 6 6
Danaus_plexippus_OGS1.0   (Monarch butterfly)   7 7
Heliconius_melpomene_   (Postman butterfly)   5 5
Bombyx_mori_   (Domestic silkworm)   4 4
Nasonia_vitripennis_   (Jewel wasp)   2 2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   5 5
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   4 4
Linepithema_humile_v1.1   (Argentine ant)   4 4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   4 4
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3 3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   4 4
Atta_cephalotes_v1.1 4 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   4 4
Lucilia_cuprina   (Australian sheep blowfly)   6 6
Drosophila_grimshawi_1.3 6 6
Drosophila_willistoni_1.3 6 6
Drosophila_pseudoobscura_2.13 6 6
Drosophila_persimilis_1.3 7 7
Drosophila_suzukii 5 5
Drosophila_yakuba_1.3 5 5
Drosophila_simulans_1.3 5 5
Drosophila_sechellia_1.3 6 6
Drosophila_melanogaster_76_5   (Fruit fly)   16 16
Drosophila_erecta_1.3 6 6
Drosophila_ananassae_1.3 6 6
Drosophila_virilis_1.2 6 6
Drosophila_mojavensis_1.3 6 6
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4 4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   5 5
Anopheles_darlingi_22   (American malaria mosquito)   4 4
Anopheles_gambiae_49_3j   (African malaria mosquito)   4 4
Tribolium_castaneum_3.0   (Red flour beetle)   5 5
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   7 5
Acyrthosiphon_pisum_   (Pea aphid)   3 3
Rhodnius_prolixus_22 5 5
Daphnia_pulex_   (Common water flea)   8 8
Strigamia_maritima_22 142 139
Sarcoptes_scabiei 4 4
Tetranychus_urticae_   (Two-spotted spider mite)   5 5
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   7 7
Pristionchus_pacificus_ 2 2
Meloidogyne_incognita_   (Southern root-knot nematode)   1 1
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 2 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2 2
Caenorhabditis_japonica_ 2 2
Caenorhabditis_brenneri_ 2 2
Caenorhabditis_remanei_ 3 3
Caenorhabditis_elegans_76_235   (Roundworm)   2 2
Caenorhabditis_briggsae_2 2 2
Trichinella_spiralis_22 3 3
Hymenolepis_microstoma_ 3 3
Echinococcus_multilocularis_ 3 3
Echinococcus_granulosus_ 3 3
Taenia_solium_   (Pork tapeworm)   3 3
Schistosoma_mansoni_ 4 4
Mnemiopsis_leidyi   (Sea walnut)   4 4
Thelohanellus_kitauei 1 1
Acropora_digitifera_v1.0 2 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   3 3
Hydra_vulgaris 3 3
Amphimedon_queenslandica 5 5
Trichoplax_adhaerens_ 1 1
Catenaria_anguillulae_PL171_v1.0 2 1
Allomyces_macrogynus_ATCC_38327_ 1 1
Selaginella_moellendorffii_ 136 120
Pinus_taeda   (Loblolly pine)   315 266
Picea_abies   (Norway spruce)   173 162
Eucalyptus_grandis_v201   (Rose gum)   208 184
Theobroma_cacao_B97-61/B2_v1   (Cacao)   162 140
Gossypium_raimondii_v221 455 385
Citrus_clementina_v165 204 176
Citrus_sinensis_v154   (Sweet orange)   219 180
Thellungiella_halophila_v173 182 165
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   331 305
Capsella_rubella_v183 182 166
Arabidopsis_lyrata_   (Lyrate rockcress)   177 161
Arabidopsis_thaliana_10   (Thale cress)   217 192
Carica_papaya_   (Papaya)   117 103
Medicago_truncatula_   (Barrel medic)   326 287
Phaseolus_vulgaris_v186   (French bean)   241 205
Glycine_max_v109   (Soybean)   448 397
Cucumis_sativus_v122   (Cucumber)   202 176
Fragaria_vesca_   (Wild strawberry)   152 131
Malus_domestica_v196   (Apple)   353 306
Prunus_persica_v139   (Peach)   158 141
Linum_usitatissimum_v200   (Flax)   295 260
Manihot_esculenta_v147   (Cassava)   238 213
Populus_trichocarpa_v156   (Black cottonwood)   269 239
Vitis_vinifera_   (Wine grape)   135 113
Mimulus_guttatus_v140   (Spotted monkey flower)   181 154
Solanum_lycopersicum_v.2.3   (Tomato)   222 186
Solanum_tuberosum_   (Potato)   313 273
Actinidia_chinensis_Hongyang_ 262 236
Aquilegia_coerulea_v195 146 124
Triticum_urartu_22 98 77
Triticum_aestivum_22   (Bread wheat)   295 255
Aegilops_tauschii_22 140 114
Brachypodium_distachyon_   (Stiff brome)   196 166
Oryza_barthii_22   (African wild rice)   189 153
Oryza_meridionalis_22 213 172
Oryza_glumaepatula_22 246 200
Oryza_glaberrima   (African rice)   165 139
Oryza_punctata_22 237 189
Oryza_nivara_22 260 213
Oryza_brachyantha_22   (Malo sina)   144 119
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   278 231
Oryza_sativa_v193   (Rice)   262 225
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   178 160
Panicum_virgatum_v202   (Switchgrass)   343 298
Setaria_italica_v164   (Foxtail millet)   230 202
Zea_mays_subsp._mays_   (Maize)   343 272
Zea_mays_v181   (Maize)   383 299
Sorghum_bicolor_   (Sorghum)   201 173
Musa_balbisiana   (Balbis banana)   356 320
Musa_acuminata_22   (Wild Malaysian banana)   336 285
Amborella_trichopoda_22 97 81
Physcomitrella_patens 176 165
Coccomyxa_subellipsoidea_sp._C-169_v2 46 21
Asterochloris_sp._Cgr/DA1pho_v1.0 17 13
Chlorella_variabilis_sp._NC64A_ 29 18
Chlorella_vulgaris_ 36 21
Volvox_carteri_f._nagariensis_ 31 24
Volvox_carteri_v199 29 22
Chlamydomonas_reinhardtii_4.0 24 18
Ostreococcus_sp._RCC809_ 15 10
Ostreococcus_lucimarinus_CCE9901_ 15 11
Ostreococcus_tauri_ 11 8
Bathycoccus_prasinos_ 15 12
Micromonas_sp._RCC299_ 22 14
Micromonas_pusilla_CCMP1545_v3.0 28 18
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Bigelowiella_natans_CCMP2755_22 21 14
Cyanophora_paradoxa_ 19 18
Ectocarpus_siliculosus 10 10
Aureococcus_anophagefferens_ 23 21
Pythium_iwayamai_DAOM_BR242034_22 3 2
Pythium_arrhenomanes_ATCC_12531_22 2 1
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   5 4
Phytophthora_sojae_1.1 4 3
Phytophthora_infestans_T30-4_ 3 2
Phytophthora_capsici_ 4 3
Hyaloperonospora_arabidopsidis_22 2 1
Phaeodactylum_tricornutumCCAP_1055/1 4 4
Fragilariopsis_cylindrus 12 10
Thalassiosira_pseudonana_CCMP1335 34 27
Symbiodinium_minutum_clade_B1_v1.2 6 4
Guillardia_theta_CCMP2712_v1.0_ 13 9
Emiliania_huxleyi_CCMP1516_ 464 232
Trichodesmium_erythraeum_IMS101 1 1
Rhodococcus_erythropolis_PR4 1 1
Bifidobacterium_breve_ACS-071-V-Sch8b 1 1
Mobiluncus_curtisii_ATCC_43063 1 1
Finegoldia_magna_ATCC_29328 1 1
Acidaminococcus_fermentans_DSM_20731 2 2
Selenomonas_ruminantium_subsp._lactilytica_TAM6421 1 1
Eubacterium_siraeum 1 1
Faecalibacterium_prausnitzii 2 2
Ruminococcus_sp. 3 3
Ruminococcus_albus_7 2 2
Oscillibacter_valericigenes_Sjm18-20 2 2
butyrate-producing_bacterium_SS3/4 5 5
Desulfosporosinus_acidiphilus_SJ4 1 1
Desulfitobacterium_dehalogenans_ATCC_51507 1 1
Eubacterium_limosum_KIST612 2 2
Clostridium_difficile_630 2 2
Filifactor_alocis_ATCC_35896 2 2
Clostridium_saccharolyticum_WM1 1 1
Clostridium_phytofermentans_ISDg 1 1
Clostridium_lentocellum_DSM_5427 1 1
[Ruminococcus]_obeum 4 4
[Ruminococcus]_torques 8 8
Eubacterium_rectale_M104/1 1 1
Eubacterium_rectale_ATCC_33656 3 3
Roseburia_hominis_A2-183 1 1
Roseburia_intestinalis 1 1
Butyrivibrio_proteoclasticus_B316 1 1
Butyrivibrio_fibrisolvens 1 1
Clostridium_ljungdahlii_DSM_13528 1 1
Enterococcus_faecium_Aus0004 1 1
Enterococcus_faecalis_62 1 1
Lactobacillus_acidophilus_30SC 1 1
Streptococcus_gallolyticus_UCN34 1 1
Streptococcus_pseudopneumoniae_IS7493 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 1 1
Streptococcus_pneumoniae_P1031 1 1
Streptococcus_oralis_Uo5 1 1
Paenibacillus_sp._JDR-2 1 1
Paenibacillus_polymyxa_M1 1 1
Solibacillus_silvestris_StLB046 1 1
Staphylococcus_pseudintermedius_HKU10-03 1 1
Staphylococcus_haemolyticus_JCSC1435 1 1
Haliscomenobacter_hydrossis_DSM_1100 1 1
Flexibacter_litoralis_DSM_6794 1 1
Gramella_forsetii_KT0803 1 1
Treponema_succinifaciens_DSM_2489 1 1
Neisseria_gonorrhoeae_NCCP11945 1 1
Burkholderia_phymatum_STM815 1 1
Burkholderia_thailandensis_E264 1 1
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_vietnamiensis_G4 3 3
Burkholderia_glumae_BGR1 2 2
Delftia_sp._Cs1-4 1 1
Delftia_acidovorans_SPH-1 3 3
Acidovorax_sp._KKS102 1 1
Acidovorax_citrulli_AAC00-1 1 1
Pusillimonas_sp._T7-7 1 1
Bordetella_pertussis_Tohama_I 1 1
Bordetella_bronchiseptica_RB50 2 2
Sphingobium_sp._SYK-6 2 2
Rhodobacter_sphaeroides_ATCC_17029 1 1
Magnetospirillum_magneticum_AMB-1 2 2
Methylobacterium_extorquens_AM1 1 1
Ochrobactrum_anthropi_ATCC_49188 1 1
Hyphomicrobium_denitrificans_ATCC_51888 7 7
Nitrobacter_hamburgensis_X14 1 1
Methylomicrobium_alcaliphilum 1 1
Pseudoxanthomonas_suwonensis_11-1 1 1
Halothiobacillus_neapolitanus_c2 1 1
Proteus_mirabilis_HI4320 2 2
Edwardsiella_ictaluri_93-146 1 1
Edwardsiella_tarda_EIB202 1 1
Yersinia_enterocolitica_subsp._enterocolitica_8081 2 2
Serratia_sp._AS12 1 1
Serratia_plymuthica_AS9 1 1
Sodalis_glossinidius_str._'morsitans' 2 2
Pantoea_sp._At-9b 1 1
Erwinia_pyrifoliae_Ep1/96 1 1
Cronobacter_turicensis_z3032 1 1
Candidatus_Hamiltonella_defensa_5AT_(Acyrthosiphon_pisum) 2 2
Shigella_sonnei_Ss046 1 1
Shigella_flexneri_5_str._8401 1 1
Shigella_dysenteriae_Sd197 1 1
Klebsiella_variicola_At-22 1 1
Escherichia_coli_'BL21-Gold(DE3)pLysS_AG' 1 1
Thiomicrospira_crunogena_XCL-2 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   25 25
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   10 10
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   6 6
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2 2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2 2
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   154 133
Hordeum_vulgare_22   (Domesticated barley)   199 175
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   227 190
Propionibacterium_acidipropionici_ATCC_4875 1 1
Bifidobacterium_bifidum_PRL2010 1 1
[Eubacterium]_cylindroides_[Eubacterium]_cylindroides_T2-87 2 2
Clostridium_difficile_BI1 1 1
Clostridium_difficile_R20291 1 1
Clostridium_difficile_CD196 1 1
Clostridium_saccharolyticum_Clostridium_cf._saccharolyticum_K10 1 1
Coprococcus_catus_GD/7 1 1
Roseburia_intestinalis_XB6B4 1 1
Clostridium_sp._SY8519 1 1
Clostridium_pasteurianum_BC1 1 1
Clostridium_botulinum_Ba4_str._657 1 1
Enterococcus_faecium_Aus0085 2 2
Enterococcus_faecalis_str._Symbioflor_1 1 1
Enterococcus_faecalis_D32 1 1
Enterococcus_faecalis_OG1RF 1 1
Enterococcus_faecalis_V583 1 1
Lactobacillus_reuteri_SD2112 1 1
Streptococcus_constellatus_subsp._pharyngis_C1050 2 2
Streptococcus_constellatus_subsp._pharyngis_C818 1 1
Streptococcus_constellatus_subsp._pharyngis_C232 1 1
Streptococcus_intermedius_C270 1 1
Streptococcus_anginosus_C238 2 2
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 1 1
Streptococcus_lutetiensis_033 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_AC-2713 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 1 1
Streptococcus_oligofermentans_AS_1.3089 1 1
Streptococcus_iniae_SF1 1 1
Streptococcus_pyogenes_Alab49 1 1
Streptococcus_pyogenes_MGAS8232 1 1
Streptococcus_pyogenes_MGAS10394 1 1
Streptococcus_pneumoniae_A026 1 1
Streptococcus_pneumoniae_ST556 1 1
Streptococcus_pneumoniae_TCH8431/19A 1 1
Streptococcus_pneumoniae_CGSP14 2 2
Streptococcus_pneumoniae_Hungary19A-6 1 1
Streptococcus_pneumoniae_Taiwan19F-14 1 1
Streptococcus_pneumoniae_670-6B 1 1
Streptococcus_agalactiae_ILRI112 1 1
Streptococcus_agalactiae_09mas018883 1 1
Streptococcus_agalactiae_2603V/R 1 1
Streptococcus_mutans_LJ23 1 1
Streptococcus_mutans_UA159 1 1
Streptococcus_suis_TL13 1 1
Streptococcus_suis_SC070731 1 1
Streptococcus_suis_JS14 1 1
Streptococcus_suis_BM407 2 2
Streptococcus_suis_SC84 1 1
Streptococcus_suis_GZ1 1 1
Streptococcus_suis_98HAH33 1 1
Streptococcus_suis_05ZYH33 1 1
Listeria_monocytogenes_N53-1 1 1
Listeria_monocytogenes_La111 1 1
Listeria_monocytogenes_SLCC2479 2 2
Listeria_monocytogenes_SLCC2540 1 1
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 1 1
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 3 3
Listeria_monocytogenes_serotype_7_str._SLCC2482 1 1
Listeria_monocytogenes_08-5578 1 1
Listeria_monocytogenes_08-5923 1 1
Listeria_monocytogenes_J0161 1 1
Listeria_monocytogenes_FSL_R2-561 2 2
Listeria_monocytogenes_EGD-e 2 2
Staphylococcus_aureus_08BA02176 1 1
Staphylococcus_aureus_subsp._aureus_ED133 1 1
Staphylococcus_aureus_subsp._aureus_S0385 1 1
Neisseria_gonorrhoeae_TCDC-NG08107 1 1
Neisseria_gonorrhoeae_FA_1090 1 1
Burkholderia_sp._YI23 2 2
Burkholderia_multivorans_ATCC_17616 1 1
Burkholderia_cepacia_GG4 1 1
Bordetella_pertussis_CS 1 1
Bordetella_parapertussis_Bpp5 3 3
Bordetella_bronchiseptica_253 1 1
Rhodobacter_sphaeroides_2.4.1 2 2
Methylobacterium_extorquens_DM4 1 1
Sinorhizobium_meliloti_SM11 1 1
Rahnella_aquatilis_HX2 1 1
Serratia_sp._AS13 1 1
Serratia_marcescens_WW4 1 1
Serratia_liquefaciens_ATCC_27592 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1 1
Erwinia_pyrifoliae_DSM_12163 1 1
Cronobacter_sakazakii_SP291 1 1
Shigella_sonnei_53G 2 2
Shigella_flexneri_2002017 1 1
Shigella_dysenteriae_1617 1 1
Salmonella_enterica_subsp._enterica_serovar_Javiana_str._CFSAN001992 1 1
Salmonella_enterica_subsp._enterica_serovar_Schwarzengrund_str._CVM19633 1 1
Salmonella_enterica_subsp._enterica_Serovar_Cubana_str._CFSAN002050 1 1
Salmonella_enterica_subsp._enterica_serovar_Enteritidis_str._P125109 1 1
Salmonella_enterica_subsp._enterica_serovar_Newport_str._USMARC-S3124.1 2 2
Salmonella_enterica_subsp._enterica_serovar_Newport_str._SL254 1 1
Salmonella_enterica_subsp._enterica_serovar_Dublin_str._CT_02021853 2 2
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_Definitive_Type_104 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhi_str._CT18 1 1
Salmonella_enterica_serovar_Bovismorbificans_genomics 1 1
Salmonella_enterica_subsp._enterica_serovar_Paratyphi_B_str._SPB7 1 1
Salmonella_enterica_subsp._enterica_serovar_Pullorum_str._S06004 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._CDC1983-67 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum/pullorum_str._RKS5078 1 1
Salmonella_enterica_subsp._enterica_serovar_Thompson_str._RM6836 1 1
Salmonella_enterica_subsp._enterica_serovar_Gallinarum_str._287/91 1 1
Klebsiella_oxytoca_KCTC_1686 1 1
Klebsiella_pneumoniae_KCTC_2242 2 2
Klebsiella_pneumoniae_342 1 1
Klebsiella_pneumoniae_subsp._pneumoniae_1084 1 1
Klebsiella_pneumoniae_subsp._rhinoscleromatis_SB3432 1 1
Escherichia_coli_E24377A 1 1
Escherichia_coli_APEC_O78 1 1
Escherichia_coli_O7:K1_str._CE10 2 2
Escherichia_coli_O104:H4_str._2009EL-2050 1 1
Escherichia_coli_O104:H4_str._2009EL-2071 1 1
Escherichia_coli_O104:H4_str._2011C-3493 1 1
Escherichia_coli_P12b 1 1
Escherichia_coli_042 1 1
Escherichia_coli_Xuzhou21 1 1
Escherichia_coli_O83:H1_str._NRG_857C 2 2
Escherichia_coli_LF82 1 1
Escherichia_coli_UMN026 1 1
Escherichia_coli_55989 1 1
Escherichia_coli_IAI1 1 1
Escherichia_coli_DH1 1 1
Escherichia_coli_DH1 1 1
Escherichia_coli_ATCC_8739 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_BL21(DE3) 1 1
Escherichia_coli_ETEC_H10407 1 1
Escherichia_coli_O55:H7_str._RM12579 1 1
Escherichia_coli_O55:H7_str._CB9615 1 1
Escherichia_coli_O26:H11_str._11368 4 4
Escherichia_coli_O111:H-_str._11128 4 4
Escherichia_coli_O127:H6_str._E2348/69 5 5
Escherichia_coli_O157:H7_str._TW14359 1 1
Escherichia_coli_O157:H7_str._EC4115 1 1
Escherichia_coli_O157:H7_str._Sakai 1 1
Escherichia_coli_O157:H7_str._EDL933 1 1
Escherichia_coli_str._K-12_substr._MG1655 1 1
Escherichia_coli_str._K-12_substr._W3110 1 1
Escherichia_coli_B_str._REL606 1 1
Enterobacter_cloacae_subsp._cloacae_NCTC_9394 3 3
Enterobacter_cloacae_subsp._cloacae_ATCC_13047 2 2
Pseudomonas_putida_H8234 1 1
Pseudomonas_putida_HB3267 1 1
Pseudomonas_putida_KT2440 1 1
Pseudomonas_aeruginosa_MTB-1 1 1
Pseudomonas_aeruginosa_LES431 3 3
Pseudomonas_aeruginosa_LESB58 4 4

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   11 11
Pan_troglodytes_69_2.1.4   (Chimpanzee)   11 11
Gorilla_gorilla_69_3.1   (Western gorilla)   14 14
Pongo_abelii_69_2   (Sumatran orangutan)   11 11
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   11 11
Macaca_mulatta_69_1   (Rhesus monkey)   10 10
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   10 10
Otolemur_garnettii_69_3   (Small-eared galago)   11 11
Microcebus_murinus_69_1   (Gray mouse lemur)   8 8
Rattus_norvegicus_69_3.4   (Norway rat)   10 10
Mus_musculus_69_38   (House mouse)   10 10
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   7 7
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   11 11
Cavia_porcellus_69_3   (Domestic guinea pig)   11 11
Oryctolagus_cuniculus_69_2   (Rabbit)   11 11
Ochotona_princeps_69   (American pika)   9 9
Tupaia_belangeri_69   (Northern tree shrew)   9 9
Sus_scrofa_69_10.2   (Pig)   10 10
Bos_taurus_69_3.1   (Cattle)   9 9
Vicugna_pacos_69_1   (Alpaca)   7 7
Tursiops_truncatus_69_1   (Bottlenose dolphin)   11 11
Mustela_putorius_furo_69_1.0   (Domestic ferret)   10 10
Ailuropoda_melanoleuca_69_1   (Giant panda)   11 11
Canis_familiaris_69_3.1   (Dog)   10 10
Felis_catus_69   (Domestic cat)   8 8
Equus_caballus_69_2   (Horse)   11 11
Myotis_lucifugus_69_2.0   (Little brown bat)   9 9
Pteropus_vampyrus_69_1   (Large flying fox)   10 10
Sorex_araneus_69_1   (European shrew)   6 6
Erinaceus_europaeus_69   (Western European hedgehog)   8 8
Procavia_capensis_69_1   (Cape rock hyrax)   8 8
Loxodonta_africana_69_3   (African savanna elephant)   11 11
Echinops_telfairi_69   (Small Madagascar hedgehog)   8 8
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   5 5
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   6 6
Macropus_eugenii_69_1.0   (Tammar wallaby)   10 10
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   10 10
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   12 12
Ornithorhynchus_anatinus_69_5   (Platypus)   8 8
Petromyzon_marinus_69_7.0   (Sea lamprey)   5 5
Meleagris_gallopavo_69_2   (Turkey)   6 6
Gallus_gallus_69_2   (Chicken)   4 4
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   5 5
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   5 5
Anolis_carolinensis_69_2.0   (Green anole)   9 9
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   11 11
Latimeria_chalumnae_69_1   (Coelacanth)   11 11
Gadus_morhua_69_1   (Atlantic cod)   9 9
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   9 9
Takifugu_rubripes_69_4   (Torafugu)   9 9
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   11 11
Oryzias_latipes_69_1   (Japanese medaka)   9 9
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   10 10
Oreochromis_niloticus_69_1.0   (Nile tilapia)   10 10
Danio_rerio_69_9   (Zebrafish)   12 12
Ciona_intestinalis_69   (Vase tunicate)   2 2
Drosophila_melanogaster_69_5   (Fruit fly)   6 6
Caenorhabditis_elegans_69_215   (Roundworm)   2 2
Arabidopsis_thaliana_10   (Thale cress)   174 158

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   62 62
Homo_sapiens__(NCBI_version)   (Human)   28 28
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   10 10
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   2 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   2 2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2 2
Picea_sitchensis__(Incomplete)   (Sitka spruce)   14 14
Lotus_japonicus__(Early_assembly) 179 165
Malus_x_domestica_(Duplicate)   (Apple)   353 306
Ricinus_communis__(Early_assembly)   (Castor bean)   141 127
Nicotiana_benthamiana_0.4.4_(Early_draft) 414 346
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   221 186
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   222 186
Phoenix_dactylifera__(Early_draft)   (Date palm)   44 35
NCBI_plasmid_sequences_(Plasmids) 17 17
NCBI_2017_08_genome 63130 59377
PDB_chains_(SCOP_1.75)_(PDB) 10 10
UniProt__viral_sequences_(Viral) 65 65
TargetDB__(Targets) 27 26
Protein_Data_Bank_(all_PDB_sequenc) 71 71
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 84 84
NCBI_viral_sequences_(Viral) 166 165
STRING_v9.0.5_(STRING) 2311 2071
Uniprot_2018_03_genome 36938 32516

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