SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Ubiquitin-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Ubiquitin-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   941 853
Pan_troglodytes_76_2.1.4   (Chimpanzee)   201 181
Gorilla_gorilla_76_3.1   (Western gorilla)   277 258
Pongo_abelii_76_2   (Sumatran orangutan)   207 186
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   216 197
Papio_anubis_76   (Olive baboon)   232 212
Macaca_mulatta_76_1   (Rhesus monkey)   351 315
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   431 403
Otolemur_garnettii_76_3   (Small-eared galago)   209 192
Microcebus_murinus_76_1   (Gray mouse lemur)   136 126
Rattus_norvegicus_76_5.0   (Norway rat)   253 228
Mus_musculus_76_38   (House mouse)   521 464
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   148 136
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   187 175
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   197 185
Cavia_porcellus_76_3   (Domestic guinea pig)   192 181
Oryctolagus_cuniculus_76_2   (Rabbit)   206 194
Ochotona_princeps_76   (American pika)   138 126
Tupaia_belangeri_76   (Northern tree shrew)   123 117
Sus_scrofa_76_10.2   (Pig)   226 206
Bos_taurus_76_3.1   (Cattle)   226 205
Ovis_aries_76_3.1   (Sheep)   219 198
Vicugna_pacos_76_1   (Alpaca)   99 94
Tursiops_truncatus_76_1   (Bottlenose dolphin)   177 160
Mustela_putorius_furo_76_1.0   (Domestic ferret)   193 178
Ailuropoda_melanoleuca_76_1   (Giant panda)   212 199
Canis_familiaris_76_3.1   (Dog)   254 232
Felis_catus_76_6.2   (Domestic cat)   201 189
Equus_caballus_76_2   (Horse)   246 224
Myotis_lucifugus_76_2.0   (Little brown bat)   208 194
Pteropus_vampyrus_76_1   (Large flying fox)   177 162
Sorex_araneus_76_1   (European shrew)   116 113
Erinaceus_europaeus_76   (Western European hedgehog)   113 110
Procavia_capensis_76_1   (Cape rock hyrax)   140 125
Loxodonta_africana_76_3   (African savanna elephant)   255 237
Echinops_telfairi_76   (Small Madagascar hedgehog)   139 134
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   332 315
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   110 104
Macropus_eugenii_76_1.0   (Tammar wallaby)   155 142
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   224 203
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   211 190
Ornithorhynchus_anatinus_76_5   (Platypus)   162 147
Saccoglossus_kowalevskii_v3.0 377 346
Petromyzon_marinus_76_7.0   (Sea lamprey)   102 91
Meleagris_gallopavo_76_2   (Turkey)   149 140
Gallus_gallus_76_4   (Chicken)   161 148
Anas_platyrhynchos_76_1.0   (Mallard)   157 143
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   163 147
Ficedula_albicollis_76_1.0   (Collared flycatcher)   161 145
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   184 168
Anolis_carolinensis_76_2.0   (Green anole)   184 164
Xenopus_laevis_   (African clawed frog)   405 358
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   219 200
Latimeria_chalumnae_76_1   (Coelacanth)   222 209
Lepisosteus_oculatus_76   (Spotted gar)   233 217
Gadus_morhua_76_1   (Atlantic cod)   220 206
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   290 272
Takifugu_rubripes_76_4   (Torafugu)   669 623
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   298 269
Oryzias_latipes_76_1   (Japanese medaka)   263 241
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   236 222
Poecilia_formosa_76   (Amazon molly)   244 228
Oreochromis_niloticus_76_1.0   (Nile tilapia)   310 293
Astyanax_mexicanus_76   (Mexican tetra)   229 214
Danio_rerio_76_9   (Zebrafish)   428 390
Oikopleura_dioica 85 78
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   200 139
Ciona_intestinalis_76   (Vase tunicate)   108 95
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   147 137
Adineta_vaga 307 272
Octopus_bimaculoides_280 142 126
Crassostrea_gigas_22   (Pacific oyster)   115 102
Lottia_gigantea_   (Owl limpet)   137 112
Helobdella_robusta_ 113 98
Capitella_sp._I_ 154 132
Danaus_plexippus_OGS1.0   (Monarch butterfly)   102 85
Heliconius_melpomene_   (Postman butterfly)   103 78
Bombyx_mori_   (Domestic silkworm)   90 77
Nasonia_vitripennis_   (Jewel wasp)   94 71
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   214 147
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   105 84
Linepithema_humile_v1.1   (Argentine ant)   89 79
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   91 82
Solenopsis_invicta_v.2.2.3   (Red fire ant)   70 64
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   101 80
Atta_cephalotes_v1.1 85 77
Camponotus_floridanus_v3.3   (Florida carpenter ant)   101 84
Lucilia_cuprina   (Australian sheep blowfly)   77 67
Drosophila_grimshawi_1.3 103 82
Drosophila_willistoni_1.3 111 87
Drosophila_pseudoobscura_2.13 101 83
Drosophila_persimilis_1.3 99 82
Drosophila_suzukii 94 85
Drosophila_yakuba_1.3 102 88
Drosophila_simulans_1.3 88 76
Drosophila_sechellia_1.3 109 86
Drosophila_melanogaster_76_5   (Fruit fly)   286 213
Drosophila_erecta_1.3 117 86
Drosophila_ananassae_1.3 120 92
Drosophila_virilis_1.2 99 83
Drosophila_mojavensis_1.3 120 85
Megaselia_scalaris_22 28 25
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   131 98
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   115 78
Anopheles_darlingi_22   (American malaria mosquito)   77 64
Anopheles_gambiae_49_3j   (African malaria mosquito)   95 78
Tribolium_castaneum_3.0   (Red flour beetle)   108 88
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   103 83
Acyrthosiphon_pisum_   (Pea aphid)   112 91
Rhodnius_prolixus_22 94 82
Daphnia_pulex_   (Common water flea)   112 95
Strigamia_maritima_22 113 98
Sarcoptes_scabiei 68 62
Tetranychus_urticae_   (Two-spotted spider mite)   89 79
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   86 73
Pristionchus_pacificus_ 82 64
Meloidogyne_incognita_   (Southern root-knot nematode)   100 92
Meloidogyne_hapla_ 51 50
Onchocerca_volvulus_22 92 79
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   122 102
Caenorhabditis_japonica_ 77 72
Caenorhabditis_brenneri_ 129 111
Caenorhabditis_remanei_ 113 93
Caenorhabditis_elegans_76_235   (Roundworm)   209 163
Caenorhabditis_briggsae_2 96 81
Trichinella_spiralis_22 94 72
Hymenolepis_microstoma_ 89 71
Echinococcus_multilocularis_ 97 80
Echinococcus_granulosus_ 100 81
Taenia_solium_   (Pork tapeworm)   100 81
Schistosoma_mansoni_ 92 83
Mnemiopsis_leidyi   (Sea walnut)   83 71
Thelohanellus_kitauei 30 23
Acropora_digitifera_v1.0 131 114
Nematostella_vectensis_1.0   (Starlet sea anemone)   132 113
Hydra_vulgaris 107 85
Amphimedon_queenslandica 235 177
Trichoplax_adhaerens_ 91 76
Proterospongia_sp._ATCC_50818_ 75 68
Monosiga_brevicollis_ 55 52
Sphaeroforma_arctica_JP610_ 52 47
Capsaspora_owczarzaki_ATCC_30864_ 81 69
Conidiobolus_coronatus_NRRL28638_v1.0 52 44
Mortierella_verticillata_NRRL_6337_ 66 57
Phycomyces_blakesleeanus_ 58 49
Rhizopus_oryzae_RA_99-880_ 62 55
Mucor_circinelloides_ 58 50
Rhizomucor_miehei_CAU432_ 46 44
Malassezia_globosa_CBS_7966_ 42 40
Sporisorium_reilianum_22 28 28
Ustilago_maydis_ 32 27
Mixia_osmundae_IAM_14324_v1.0 29 29
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 35 29
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 38 31
Melampsora_laricis-populina_ 40 33
Rhodotorula_graminis_WP1_v1.0 36 33
Sporobolomyces_roseus_IAM_13481_ 33 27
Microbotryum_violaceum_22 30 30
Wallemia_sebi_v1.0 33 24
Sphaerobolus_stellatus_v1.0 58 47
Piloderma_croceum_F_1598_v1.0 77 58
Serpula_lacrymans_var._lacrymans_S7.9_ 36 29
Coniophora_puteana 36 33
Hydnomerulius_pinastri_v2.0 38 34
Paxillus_rubicundulus_Ve08.2h10_v1.0 48 40
Pisolithus_microcarpus_441_v1.0 55 43
Pisolithus_tinctorius_Marx_270_v1.0 41 35
Scleroderma_citrinum_Foug_A_v1.0 47 38
Coprinopsis_cinerea_okayama7_130_v3 43 37
Pleurotus_ostreatus_   (Oyster mushroom)   51 36
Amanita_thiersii_Skay4041_v1.0 36 29
Amanita_muscaria_Koide_v1.0   (Fly agaric)   46 38
Galerina_marginata_v1.0 55 44
Hebeloma_cylindrosporum_h7_v2.0 54 46
Laccaria_bicolor_S238N-H82_ 53 44
Agaricus_bisporus_var._bisporus_ 33 30
Schizophyllum_commune_ 38 32
Stereum_hirsutum_FP-91666_SS1__v1.0 45 36
Heterobasidion_annosum_ 41 33
Gloeophyllum_trabeumv1.0 42 32
Punctularia_strigosozonata_v1.0 31 28
Sebacina_vermifera_MAFF_305830_v1.0 47 40
Fomitiporia_mediterranea_v1.0 38 35
Tulasnella_calospora_AL13/4D_v1.0 59 52
Postia_placenta_ 56 41
Wolfiporia_cocos_MD-104_SS10__v1.0 44 35
Fomitopsis_pinicolav1.0 45 36
Fomitopsis_pinicola_FP-58527_SS1_v3.0 45 36
Phanerochaete_chrysosporium_RP-78_2.1 39 30
Dichomitus_squalens 41 34
Trametes_versicolor_v1.0 55 35
Tremella_mesenterica_   (Witches' butter)   28 23
Daldinia_eschscholzii_EC12_v1.0 32 28
Apiospora_montagnei_NRRL_25634_v1.0 32 28
Magnaporthe_poae_ATCC_64411_22 31 26
Magnaporthe_grisea_70-15_ 31 27
Podospora_anserina_ 30 26
Sporotrichum_thermophile_ATCC_42464_ 28 24
Thielavia_terrestris_NRRL_8126_ 29 25
Chaetomium_globosum_CBS_148.51_ 27 23
Neurospora_tetrasperma_ 31 27
Neurospora_discreta_FGSC_8579_ 32 28
Neurospora_crassa_OR74A_ 33 29
Cryphonectria_parasitica_   (Chestnut blight fungus)   32 29
Verticillium_albo-atrum_VaMs.102_ 29 27
Verticillium_dahliae_VdLs.17_ 31 28
Acremonium_alcalophilumv_1.0 35 31
Glomerella_graminicola_22 34 30
Fusarium_graminearum_ 34 31
Nectria_haematococca_mpVI_ 35 32
Fusarium_oxysporum_f._sp._lycopersici_4286_ 35 31
Fusarium_verticillioides_7600_ 32 28
Trichoderma_asperellum_CBS_433.97_v1.0 32 29
Trichoderma_atroviride_ 33 30
Trichoderma_citrinoviride_v1.0 31 28
Trichoderma_reesei_1.2 32 28
Trichoderma_virens_Gv29-8_ 34 30
Trichoderma_longibrachiatum_ATCC_18648_v1.0 33 29
Trichoderma_harzianum_CBS_226.95_v1.0 35 31
Amorphotheca_resinae_v1.0   (Creosote fungus)   35 31
Botrytis_cinerea_B05.10_ 34 31
Sclerotinia_sclerotiorum_ 34 31
Blumeria_graminis_22 30 29
Didymella_exigua_CBS_183.55_v1.0 32 28
Leptosphaeria_maculans_22 30 25
Setosphaeria_turcica_v1.0 31 27
Cochliobolus_miyabeanus_ATCC_44560_v1.0 31 29
Cochliobolus_victoriae_FI3_v1.0 34 30
Cochliobolus_carbonum_26-R-13_v1.0 29 28
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   30 26
Alternaria_brassicicola_ 31 27
Cochliobolus_lunatus_m118_v2.0 35 31
Pyrenophora_teres_f._teres_22 32 29
Pyrenophora_tritici-repentis_ 31 28
Stagonospora_nodorum_ 32 29
Mycosphaerella_graminicola_IPO323_ 33 31
Zasmidium_cellare_ATCC_36951_v1.0 40 36
Dothistroma_septosporum 45 40
Septoria_musiva_v1.0 34 30
Mycosphaerella_fijiensis_CIRAD86_ 39 33
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 29 26
Paracoccidioides_brasiliensis_Pb18_ 33 29
Coccidioides_posadasii_RMSCC_3488_ 32 29
Coccidioides_immitis_RS_ 33 29
Ajellomyces_dermatitidis_SLH14081_ 33 28
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 26 22
Microsporum_canis_CBS_113480_ 30 26
Trichophyton_equinum_CBS_127.97_ 31 28
Trichophyton_verrucosum_HKI_0517_ 27 24
Arthroderma_benhamiae_CBS_112371_ 28 25
Trichophyton_tonsurans_CBS_112818_ 31 28
Trichophyton_rubrum_CBS_118892_ 32 29
Uncinocarpus_reesii_1704_ 25 21
Aspergillus_zonatus_v1.0 31 30
Penicillium_chrysogenum_Wisconsin_54-1255_ 31 27
Penicillium_chrysogenum_v1.0 32 28
Aspergillus_acidus_v1.0 33 29
Aspergillus_fumigatus_Af293 31 27
Aspergillus_brasiliensis_v1.0 33 29
Aspergillus_nidulans_FGSC_A4_ 33 29
Aspergillus_sydowii_v1.0 33 29
Aspergillus_versicolor_v1.0 31 27
Aspergillus_glaucus 33 29
Aspergillus_carbonarius_ITEM_5010_ 33 29
Neosartorya_fischeri_NRRL_181_ 35 31
Aspergillus_terreus_NIH2624_ 33 28
Aspergillus_tubingensis_v1.0 33 29
Aspergillus_wentii_v1.0 35 31
Aspergillus_oryzae_RIB40_ 27 24
Aspergillus_niger_22 31 27
Aspergillus_niger_ATCC_1015_ 18 17
Aspergillus_flavus_NRRL3357_ 32 28
Aspergillus_clavatus_NRRL_1_ 34 30
Penicillium_marneffei_ATCC_18224_ 40 36
Tuber_melanosporum_Mel28_22 38 30
Tuber_melanosporum_Vittad_   (Perigord truffle)   39 31
Hansenula_polymorpha_v2.0 25 20
Dekkera_bruxellensis_CBS_2499_v2.0 20 20
Pichia_membranifaciensv1.0 18 18
Candida_tanzawaensis_NRRL_Y-17324__v1.0 25 23
Candida_dubliniensis_CD36_ 24 21
Candida_tropicalis_MYA-3404_ 22 19
Candida_parapsilosis_ 21 19
Candida_albicans_SC5314 24 22
Lodderomyces_elongisporus_NRRL_YB-4239_ 21 18
Babjeviella_inositovora_NRRL_Y-12698_v1.0 20 19
Pichia_stipitis_CBS_6054_ 22 19
Candida_guilliermondii_ATCC_6260_ 27 22
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 22 22
Debaromyces_hansenii 27 22
Wickerhamomyces_anomalus 33 23
Pichia_pastoris_GS115_ 24 21
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 11 11
Yarrowia_lipolytica_CLIB122 30 25
Candida_lusitaniae_ATCC_42720_ 25 21
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 20 20
Vanderwaltozyma_polyspora_DSM_70294_ 33 26
Candida_glabrata_CBS138 33 26
Kluyveromyces_thermotolerans_CBS_6340 25 21
Lachancea_kluyveri_ 28 24
Kluyveromyces_waltii 20 17
Ashbya_gossypii_ATCC_10895_ 25 20
Zygosaccharomyces_rouxii_ 29 23
Saccharomyces_mikatae_MIT 28 24
Saccharomyces_paradoxus_MIT 29 24
Saccharomyces_cerevisiae_76   (Baker's yeast)   31 26
Saccharomyces_bayanus_MIT 30 24
Kluyveromyces_lactis 25 21
Schizosaccharomyces_cryophilus_OY26_22 32 30
Schizosaccharomyces_octosporus_yFS286_ 32 29
Schizosaccharomyces_japonicus_yFS275_ 34 28
Schizosaccharomyces_pombe   (Fission yeast)   35 29
Catenaria_anguillulae_PL171_v1.0 60 55
Allomyces_macrogynus_ATCC_38327_ 105 94
Spizellomyces_punctatus_DAOM_BR117_ 54 45
Dictyostelium_discoideum 137 103
Dictyostelium_purpureum_ 98 79
Entamoeba_dispar_1.2 38 37
Entamoeba_invadens_1.2 44 42
Entamoeba_histolytica_1 43 42
Selaginella_moellendorffii_ 135 88
Pinus_taeda   (Loblolly pine)   93 86
Picea_abies   (Norway spruce)   202 107
Eucalyptus_grandis_v201   (Rose gum)   186 161
Theobroma_cacao_B97-61/B2_v1   (Cacao)   135 103
Gossypium_raimondii_v221 576 425
Citrus_clementina_v165 242 172
Citrus_sinensis_v154   (Sweet orange)   263 186
Thellungiella_halophila_v173 199 154
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   169 154
Capsella_rubella_v183 200 141
Arabidopsis_lyrata_   (Lyrate rockcress)   209 141
Arabidopsis_thaliana_10   (Thale cress)   270 186
Carica_papaya_   (Papaya)   98 75
Medicago_truncatula_   (Barrel medic)   343 228
Phaseolus_vulgaris_v186   (French bean)   149 119
Glycine_max_v109   (Soybean)   363 272
Cucumis_sativus_v122   (Cucumber)   173 161
Fragaria_vesca_   (Wild strawberry)   182 127
Malus_domestica_v196   (Apple)   347 271
Prunus_persica_v139   (Peach)   192 131
Linum_usitatissimum_v200   (Flax)   162 150
Manihot_esculenta_v147   (Cassava)   195 153
Populus_trichocarpa_v156   (Black cottonwood)   305 212
Vitis_vinifera_   (Wine grape)   108 85
Mimulus_guttatus_v140   (Spotted monkey flower)   210 126
Solanum_lycopersicum_v.2.3   (Tomato)   151 119
Solanum_tuberosum_   (Potato)   218 162
Actinidia_chinensis_Hongyang_ 175 132
Aquilegia_coerulea_v195 408 218
Triticum_urartu_22 140 98
Triticum_aestivum_22   (Bread wheat)   318 259
Aegilops_tauschii_22 93 85
Brachypodium_distachyon_   (Stiff brome)   163 121
Oryza_barthii_22   (African wild rice)   142 123
Oryza_meridionalis_22 141 123
Oryza_glumaepatula_22 145 125
Oryza_glaberrima   (African rice)   122 98
Oryza_punctata_22 142 111
Oryza_nivara_22 158 138
Oryza_brachyantha_22   (Malo sina)   130 104
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   270 185
Oryza_sativa_v193   (Rice)   269 183
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   140 104
Panicum_virgatum_v202   (Switchgrass)   384 266
Setaria_italica_v164   (Foxtail millet)   256 159
Zea_mays_subsp._mays_   (Maize)   252 181
Zea_mays_v181   (Maize)   287 215
Sorghum_bicolor_   (Sorghum)   162 104
Musa_balbisiana   (Balbis banana)   145 120
Musa_acuminata_22   (Wild Malaysian banana)   144 130
Amborella_trichopoda_22 62 61
Physcomitrella_patens 136 95
Coccomyxa_subellipsoidea_sp._C-169_v2 55 45
Asterochloris_sp._Cgr/DA1pho_v1.0 33 28
Chlorella_variabilis_sp._NC64A_ 53 41
Chlorella_vulgaris_ 41 35
Volvox_carteri_f._nagariensis_ 45 38
Volvox_carteri_v199 53 42
Chlamydomonas_reinhardtii_4.0 54 51
Ostreococcus_sp._RCC809_ 26 24
Ostreococcus_lucimarinus_CCE9901_ 34 30
Ostreococcus_tauri_ 27 24
Bathycoccus_prasinos_ 37 32
Micromonas_sp._RCC299_ 38 35
Micromonas_pusilla_CCMP1545_v3.0 42 37
Cyanidioschyzon_merolae_strain_10D_22 17 16
Cyanidioschyzon_merolae 17 16
Porphyridium_purpureum_02_2012 30 30
Thecamonas_trahens_ATCC_50062_ 64 59
Bigelowiella_natans_CCMP2755_22 133 110
Giardia_lamblia_2.3 14 14
Cyanophora_paradoxa_ 45 43
Leishmania_mexicana_2.4 43 42
Leishmania_major_strain_Friedlin_ 70 59
Leishmania_infantum_JPCM5_2.4 61 42
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 65 39
Trypanosoma_vivax_ 34 31
Trypanosoma_cruzi_strain_CL_Brener 45 31
Trypanosoma_congolense_2.4 42 28
Trypanosoma_brucei_gambiense_v4.1 31 31
Trypanosoma_brucei_TREU927_v4.1 40 32
Ectocarpus_siliculosus 68 57
Aureococcus_anophagefferens_ 59 49
Albugo_laibachii_22 64 54
Pythium_iwayamai_DAOM_BR242034_22 53 48
Pythium_arrhenomanes_ATCC_12531_22 43 40
Pythium_ultimum_v1.7-2 57 54
Pythium_aphanidermatum_DAOM_BR444_22 47 44
Pythium_irregulare_DAOM_BR486_22 49 45
Pythium_vexans_DAOM_BR484_22 44 42
Phytophthora_ramorum_1.1   (Sudden oak death agent)   69 57
Phytophthora_sojae_1.1 65 56
Phytophthora_infestans_T30-4_ 66 59
Phytophthora_capsici_ 61 52
Hyaloperonospora_arabidopsidis_22 58 49
Phaeodactylum_tricornutumCCAP_1055/1 35 31
Fragilariopsis_cylindrus 96 70
Thalassiosira_pseudonana_CCMP1335 39 37
Perkinsus_marinus_ATCC_50983_ 77 64
Paramecium_tetraurelia_ 203 153
Tetrahymena_thermophila_SB210_1_ 124 70
Ichthyophthirius_multifiliis_strain_G5_ 30 27
Cryptosporidium_hominis 24 21
Cryptosporidium_muris 26 24
Cryptosporidium_parvum_Iowa_II 28 25
Neospora_caninum 42 35
Toxoplasma_gondii_VEG 32 28
Toxoplasma_gondii_ME49 34 30
Toxoplasma_gondii_GT1 33 29
Babesia_bovis_T2Bo_ 48 44
Theileria_parva__ 27 26
Theileria_annulata 22 21
Plasmodium_falciparum_3D7_ 31 27
Plasmodium_vivax_SaI-1_7.0 29 25
Plasmodium_knowlesi_strain_H_ 34 27
Plasmodium_yoelii_ssp._yoelii_1_ 24 21
Plasmodium_chabaudi_ 31 28
Plasmodium_berghei_ANKA_ 29 27
Symbiodinium_minutum_clade_B1_v1.2 460 428
Naegleria_gruberi_ 113 78
Trichomonas_vaginalis_ 230 207
Guillardia_theta_CCMP2712_v1.0_ 97 83
Emiliania_huxleyi_CCMP1516_ 137 121
Conexibacter_woesei_DSM_14684 1 1
Nakamurella_multipartita_DSM_44233 1 1
Streptomyces_sp._SirexAA-E 1 1
Clostridium_thermocellum_ATCC_27405 1 1
Ruminococcus_albus_7 3 3
Clostridium_lentocellum_DSM_5427 1 1
Eubacterium_rectale_ATCC_33656 1 1
Coprococcus_sp._ART55/1 1 1
Clostridium_acetobutylicum_ATCC_824 1 1
Enterococcus_hirae_ATCC_9790 1 1
Enterococcus_faecalis_62 1 1
Lactococcus_lactis_subsp._cremoris_MG1363 1 1
Streptococcus_parasanguinis_ATCC_15912 1 1
Streptococcus_sanguinis_SK36 1 1
Streptococcus_oralis_Uo5 1 1
Streptococcus_gordonii_str._Challis_substr._CH1 1 1
Solibacillus_silvestris_StLB046 1 1
Oceanobacillus_iheyensis_HTE831 1 1
Bacillus_sp._JS 1 1
Bacillus_amyloliquefaciens_FZB42 1 1
Bacillus_subtilis_subsp._subtilis_str._168 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_halodurans_C-125 1 1
Bacillus_pseudofirmus_OF4 1 1
Bacillus_coagulans_2-6 1 1
Staphylococcus_aureus_subsp._aureus_JH1 1 1
Spirosoma_linguale_DSM_74 1 1
Flavobacterium_indicum_GPTSA100-9 1 1
Parachlamydia_acanthamoebae_UV-7 1 1
Candidatus_Chloracidobacterium_thermophilum_B 1 1
Acidovorax_citrulli_AAC00-1 1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1
Candidatus_Caldiarchaeum_subterraneum 1 1
Thermoplasmatales_archaeon_BRNA1 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   377 324
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   225 169
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   130 97
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   87 70
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   156 125
Cryptococcus_neoformans_var._grubii_H99_ 29 25
Cryptococcus_neoformans_B-3501A_ 36 28
Cryptococcus_neoformans_JEC21_ 33 25
Paracoccidioides_brasiliensis_Pb01_ 32 27
Paracoccidioides_brasiliensis_Pb03_ 31 27
Coccidioides_posadasii_str._Silveira_ 31 28
Coccidioides_immitis_RMSCC_3703_ 27 25
Coccidioides_immitis_RMSCC_2394_ 33 29
Coccidioides_immitis_H538.4_ 31 26
Ajellomyces_dermatitidis_ER-3_ 32 28
Histoplasma_capsulatum_H143 30 26
Histoplasma_capsulatum_H88 32 28
Histoplasma_capsulatum_G186AR 33 29
Aspergillus_fumigatus_A1163_ 33 29
Candida_albicans_WO-1_ 22 20
Saccharomyces_cerevisiae_UC5 25 24
Saccharomyces_cerevisiae_PW5 28 23
Saccharomyces_cerevisiae_FL100 21 17
Saccharomyces_cerevisiae_CLIB382 2 2
Saccharomyces_cerevisiae_CLIB324 14 13
Saccharomyces_cerevisiae_CBS7960 23 22
Saccharomyces_cerevisiae_YJM269 26 21
Saccharomyces_cerevisiae_T7 31 26
Saccharomyces_cerevisiae_FostersB 25 22
Saccharomyces_cerevisiae_FostersO 18 18
Saccharomyces_cerevisiae_VL3 25 23
Saccharomyces_cerevisiae_Vin13 26 22
Saccharomyces_cerevisiae_LalvinQA23 22 22
Saccharomyces_cerevisiae_AWRI796 22 22
Saccharomyces_cerevisiae_Sigma1278b 30 26
Saccharomyces_cerevisiae_W303 28 26
Saccharomyces_cerevisiae_JAY291 26 25
Saccharomyces_cerevisiae_AWRI1631 17 16
Saccharomyces_cerevisiae_YPS163 10 10
Saccharomyces_cerevisiae_M22 12 12
Saccharomyces_cerevisiae_T73 11 11
Saccharomyces_cerevisiae_CLIB215 18 17
Saccharomyces_cerevisiae_Y10 8 7
Saccharomyces_cerevisiae_YJM789_ 30 25
Saccharomyces_cerevisiae_YJM789 31 26
Saccharomyces_cerevisiae_RM11-1a 31 26
Saccharomyces_cerevisiae_RM11-1a_ 31 26
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   31 26
Schizosaccharomyces_pombe_972h-_ 35 29
Batrachochytrium_dendrobatidis_JEL423_ 37 34
Batrachochytrium_dendrobatidis_JAM81_ 37 32
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   141 100
Hordeum_vulgare_22   (Domesticated barley)   119 112
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   180 136
Trypanosoma_brucei_Lister_427_v4.1 40 32
Neospora_caninum_Nc-Liverpool_6.2 42 35
Plasmodium_falciparum_HB3_ 24 20
Plasmodium_falciparum_Dd2_ 19 16
Crinalium_epipsammum_PCC_9333 2 2
Clostridium_thermocellum_DSM_1313 1 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1 1
Clostridium_acetobutylicum_DSM_1731 1 1
Clostridium_acetobutylicum_EA_2018 1 1
Carnobacterium_maltaromaticum_LMA28 1 1
Enterococcus_faecalis_D32 1 1
Enterococcus_faecalis_OG1RF 1 1
Lactococcus_lactis_subsp._cremoris_KW2 1 1
Lactococcus_lactis_subsp._cremoris_NZ9000 1 1
Streptococcus_iniae_SF1 1 1
Streptococcus_parasanguinis_FW213 1 1
Streptococcus_suis_ST3 1 1
Streptococcus_suis_D12 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 1 1
Bacillus_amyloliquefaciens_LFB112 1 1
Bacillus_amyloliquefaciens_CC178 1 1
Bacillus_amyloliquefaciens_Y2 1 1
Bacillus_amyloliquefaciens_IT-45 1 1
Bacillus_amyloliquefaciens_XH7 1 1
Bacillus_amyloliquefaciens_LL3 1 1
Bacillus_amyloliquefaciens_TA208 1 1
Bacillus_amyloliquefaciens_DSM_7 1 1
Bacillus_subtilis_PY79 1 1
Bacillus_subtilis_XF-1 1 1
Bacillus_subtilis_QB928 1 1
Bacillus_subtilis_BSn5 1 1
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 1 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1 1
Bacillus_subtilis_subsp._natto_BEST195 1 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 1 1
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 1 1
Bacillus_toyonensis_BCT-7112 1 1
Bacillus_thuringiensis_HD-771 1 1
Bacillus_thuringiensis_HD-789 1 1
Bacillus_thuringiensis_MC28 1 1
Bacillus_thuringiensis_serovar_konkukian_str._97-27 1 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 1 1
Bacillus_thuringiensis_BMB171 1 1
Bacillus_cereus_B4264 1 1
Bacillus_cereus_G9842 1 1
Staphylococcus_aureus_subsp._aureus_MSHR1132 1 1
Staphylococcus_aureus_CA-347 1 1
Staphylococcus_aureus_Bmb9393 1 1
Staphylococcus_aureus_M1 1 1
Staphylococcus_aureus_08BA02176 1 1
Staphylococcus_aureus_04-02981 1 1
Staphylococcus_aureus_RF122 1 1
Staphylococcus_aureus_subsp._aureus_Z172 1 1
Staphylococcus_aureus_subsp._aureus_6850 1 1
Staphylococcus_aureus_subsp._aureus_SA957 1 1
Staphylococcus_aureus_subsp._aureus_CN1 1 1
Staphylococcus_aureus_subsp._aureus_SA40 1 1
Staphylococcus_aureus_subsp._aureus_11819-97 1 1
Staphylococcus_aureus_subsp._aureus_M013 1 1
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 1 1
Staphylococcus_aureus_subsp._aureus_VC40 1 1
Staphylococcus_aureus_subsp._aureus_T0131 1 1
Staphylococcus_aureus_subsp._aureus_LGA251 1 1
Staphylococcus_aureus_subsp._aureus_ECT-R_2 1 1
Staphylococcus_aureus_subsp._aureus_JKD6159 1 1
Staphylococcus_aureus_subsp._aureus_ED133 1 1
Staphylococcus_aureus_subsp._aureus_ED98 1 1
Staphylococcus_aureus_subsp._aureus_TW20 1 1
Staphylococcus_aureus_subsp._aureus_55/2053 1 1
Staphylococcus_aureus_subsp._aureus_TCH60 1 1
Staphylococcus_aureus_subsp._aureus_str._JKD6008 1 1
Staphylococcus_aureus_subsp._aureus_71193 1 1
Staphylococcus_aureus_subsp._aureus_S0385 1 1
Staphylococcus_aureus_subsp._aureus_Mu3 1 1
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 1 1
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 1 1
Staphylococcus_aureus_subsp._aureus_JH9 1 1
Staphylococcus_aureus_subsp._aureus_MSSA476 1 1
Staphylococcus_aureus_subsp._aureus_MRSA252 1 1
Staphylococcus_aureus_subsp._aureus_MW2 1 1
Staphylococcus_aureus_subsp._aureus_N315 1 1
Staphylococcus_aureus_subsp._aureus_Mu50 1 1
Staphylococcus_aureus_subsp._aureus_COL 1 1
Staphylococcus_aureus_subsp._aureus_NCTC_8325 1 1
Bacteroides_fragilis_638R 1 1
Bacteroides_fragilis_NCTC_9343 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   239 207
Pan_troglodytes_69_2.1.4   (Chimpanzee)   197 177
Gorilla_gorilla_69_3.1   (Western gorilla)   214 198
Pongo_abelii_69_2   (Sumatran orangutan)   203 182
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   193 175
Macaca_mulatta_69_1   (Rhesus monkey)   212 192
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   220 201
Otolemur_garnettii_69_3   (Small-eared galago)   200 185
Microcebus_murinus_69_1   (Gray mouse lemur)   136 126
Rattus_norvegicus_69_3.4   (Norway rat)   243 218
Mus_musculus_69_38   (House mouse)   217 190
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   146 135
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   172 163
Cavia_porcellus_69_3   (Domestic guinea pig)   189 178
Oryctolagus_cuniculus_69_2   (Rabbit)   195 186
Ochotona_princeps_69   (American pika)   138 126
Tupaia_belangeri_69   (Northern tree shrew)   123 117
Sus_scrofa_69_10.2   (Pig)   191 174
Bos_taurus_69_3.1   (Cattle)   202 183
Vicugna_pacos_69_1   (Alpaca)   99 94
Tursiops_truncatus_69_1   (Bottlenose dolphin)   175 159
Mustela_putorius_furo_69_1.0   (Domestic ferret)   193 178
Ailuropoda_melanoleuca_69_1   (Giant panda)   192 179
Canis_familiaris_69_3.1   (Dog)   202 183
Felis_catus_69   (Domestic cat)   130 115
Equus_caballus_69_2   (Horse)   194 179
Myotis_lucifugus_69_2.0   (Little brown bat)   203 189
Pteropus_vampyrus_69_1   (Large flying fox)   176 161
Sorex_araneus_69_1   (European shrew)   116 113
Erinaceus_europaeus_69   (Western European hedgehog)   113 110
Procavia_capensis_69_1   (Cape rock hyrax)   138 124
Loxodonta_africana_69_3   (African savanna elephant)   200 185
Echinops_telfairi_69   (Small Madagascar hedgehog)   139 134
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   114 111
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   110 104
Macropus_eugenii_69_1.0   (Tammar wallaby)   153 141
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   182 165
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   200 181
Ornithorhynchus_anatinus_69_5   (Platypus)   149 136
Petromyzon_marinus_69_7.0   (Sea lamprey)   96 85
Meleagris_gallopavo_69_2   (Turkey)   132 123
Gallus_gallus_69_2   (Chicken)   159 143
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   158 143
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   154 141
Anolis_carolinensis_69_2.0   (Green anole)   174 157
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   178 159
Latimeria_chalumnae_69_1   (Coelacanth)   181 169
Gadus_morhua_69_1   (Atlantic cod)   214 200
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   232 217
Takifugu_rubripes_69_4   (Torafugu)   222 209
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   238 214
Oryzias_latipes_69_1   (Japanese medaka)   218 197
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   236 222
Oreochromis_niloticus_69_1.0   (Nile tilapia)   231 217
Danio_rerio_69_9   (Zebrafish)   259 234
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   68 57
Ciona_intestinalis_69   (Vase tunicate)   103 90
Drosophila_melanogaster_69_5   (Fruit fly)   114 90
Caenorhabditis_elegans_69_215   (Roundworm)   102 86
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   31 26
Arabidopsis_thaliana_10   (Thale cress)   177 134

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   988 890
Homo_sapiens__(NCBI_version)   (Human)   324 296
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   218 191
Heliconius_numata__(Incomplete) 72 46
Loa_loa_v3.3_(Request)   (Eye worm)   91 75
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   84 78
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   80 70
Moniliophthora_perniciosa_FA553__(Genome_survey) 11 10
Encephalitozoon_intestinalis__(endoparasite) 9 9
Encephalitozoon_cuniculi_(endoparasite) 9 9
Picea_sitchensis__(Incomplete)   (Sitka spruce)   18 16
Lotus_japonicus__(Early_assembly) 97 77
Malus_x_domestica_(Duplicate)   (Apple)   347 271
Ricinus_communis__(Early_assembly)   (Castor bean)   97 84
Nicotiana_benthamiana_0.4.4_(Early_draft) 174 163
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   150 118
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   151 119
Phoenix_dactylifera__(Early_draft)   (Date palm)   50 45
NCBI_plasmid_sequences_(Plasmids) 3 3
Protozoadb_2010_08_(Protozoadb) 1519 1350
Protein_Data_Bank_(all_PDB_sequenc) 2534 2451
Core_Eukaryotic_Genes_458_(CEGMA) 30 30
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 4332 4332
STRING_v9.0.5_(STRING) 11467 9796
Uniprot_2018_03_genome 132153 112843
NCBI_2017_08_genome 169957 150215
NCBI_viral_sequences_(Viral) 97 96
UniProt__viral_sequences_(Viral) 110 100
TargetDB__(Targets) 953 740
PDB_chains_(SCOP_1.75)_(PDB) 156 155

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