SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for CAD & PB1 domains superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a CAD & PB1 domains domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   75 75
Pan_troglodytes_76_2.1.4   (Chimpanzee)   17 17
Gorilla_gorilla_76_3.1   (Western gorilla)   21 21
Pongo_abelii_76_2   (Sumatran orangutan)   17 17
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   22 22
Papio_anubis_76   (Olive baboon)   21 21
Macaca_mulatta_76_1   (Rhesus monkey)   27 27
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   33 33
Otolemur_garnettii_76_3   (Small-eared galago)   20 20
Microcebus_murinus_76_1   (Gray mouse lemur)   14 14
Rattus_norvegicus_76_5.0   (Norway rat)   21 21
Mus_musculus_76_38   (House mouse)   43 43
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   12 12
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   18 18
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   32 32
Cavia_porcellus_76_3   (Domestic guinea pig)   21 21
Oryctolagus_cuniculus_76_2   (Rabbit)   17 17
Ochotona_princeps_76   (American pika)   13 13
Tupaia_belangeri_76   (Northern tree shrew)   12 12
Sus_scrofa_76_10.2   (Pig)   24 24
Bos_taurus_76_3.1   (Cattle)   22 22
Ovis_aries_76_3.1   (Sheep)   20 20
Vicugna_pacos_76_1   (Alpaca)   12 12
Tursiops_truncatus_76_1   (Bottlenose dolphin)   18 18
Mustela_putorius_furo_76_1.0   (Domestic ferret)   18 18
Ailuropoda_melanoleuca_76_1   (Giant panda)   23 23
Canis_familiaris_76_3.1   (Dog)   22 22
Felis_catus_76_6.2   (Domestic cat)   21 21
Equus_caballus_76_2   (Horse)   20 20
Myotis_lucifugus_76_2.0   (Little brown bat)   15 15
Pteropus_vampyrus_76_1   (Large flying fox)   16 16
Sorex_araneus_76_1   (European shrew)   9 9
Erinaceus_europaeus_76   (Western European hedgehog)   12 12
Procavia_capensis_76_1   (Cape rock hyrax)   15 15
Loxodonta_africana_76_3   (African savanna elephant)   22 22
Echinops_telfairi_76   (Small Madagascar hedgehog)   11 11
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   25 24
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   11 11
Macropus_eugenii_76_1.0   (Tammar wallaby)   15 15
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   21 21
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   21 21
Ornithorhynchus_anatinus_76_5   (Platypus)   18 18
Saccoglossus_kowalevskii_v3.0 38 38
Petromyzon_marinus_76_7.0   (Sea lamprey)   5 5
Meleagris_gallopavo_76_2   (Turkey)   21 21
Gallus_gallus_76_4   (Chicken)   19 19
Anas_platyrhynchos_76_1.0   (Mallard)   19 19
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   21 21
Ficedula_albicollis_76_1.0   (Collared flycatcher)   18 18
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   23 23
Anolis_carolinensis_76_2.0   (Green anole)   18 18
Xenopus_laevis_   (African clawed frog)   34 34
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   28 28
Latimeria_chalumnae_76_1   (Coelacanth)   27 27
Lepisosteus_oculatus_76   (Spotted gar)   25 25
Gadus_morhua_76_1   (Atlantic cod)   16 16
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   27 27
Takifugu_rubripes_76_4   (Torafugu)   44 44
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   21 21
Oryzias_latipes_76_1   (Japanese medaka)   27 27
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   19 19
Poecilia_formosa_76   (Amazon molly)   19 19
Oreochromis_niloticus_76_1.0   (Nile tilapia)   26 26
Astyanax_mexicanus_76   (Mexican tetra)   23 23
Danio_rerio_76_9   (Zebrafish)   33 33
Oikopleura_dioica 4 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   11 11
Ciona_intestinalis_76   (Vase tunicate)   9 9
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   10 10
Adineta_vaga 17 17
Octopus_bimaculoides_280 13 13
Crassostrea_gigas_22   (Pacific oyster)   13 13
Lottia_gigantea_   (Owl limpet)   8 8
Helobdella_robusta_ 7 7
Capitella_sp._I_ 10 10
Danaus_plexippus_OGS1.0   (Monarch butterfly)   5 5
Heliconius_melpomene_   (Postman butterfly)   6 6
Bombyx_mori_   (Domestic silkworm)   5 5
Nasonia_vitripennis_   (Jewel wasp)   3 3
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   5 5
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   6 6
Linepithema_humile_v1.1   (Argentine ant)   10 10
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   7 7
Solenopsis_invicta_v.2.2.3   (Red fire ant)   4 4
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   4 4
Atta_cephalotes_v1.1 5 5
Camponotus_floridanus_v3.3   (Florida carpenter ant)   6 6
Lucilia_cuprina   (Australian sheep blowfly)   5 5
Drosophila_grimshawi_1.3 6 6
Drosophila_willistoni_1.3 6 6
Drosophila_pseudoobscura_2.13 6 6
Drosophila_persimilis_1.3 6 6
Drosophila_suzukii 5 4
Drosophila_yakuba_1.3 6 6
Drosophila_simulans_1.3 6 6
Drosophila_sechellia_1.3 6 6
Drosophila_melanogaster_76_5   (Fruit fly)   13 13
Drosophila_erecta_1.3 6 6
Drosophila_ananassae_1.3 6 6
Drosophila_virilis_1.2 6 6
Drosophila_mojavensis_1.3 6 6
Megaselia_scalaris_22 3 3
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   5 5
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   6 6
Anopheles_darlingi_22   (American malaria mosquito)   5 5
Anopheles_gambiae_49_3j   (African malaria mosquito)   4 4
Tribolium_castaneum_3.0   (Red flour beetle)   6 6
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   7 7
Acyrthosiphon_pisum_   (Pea aphid)   4 4
Rhodnius_prolixus_22 7 7
Daphnia_pulex_   (Common water flea)   11 11
Strigamia_maritima_22 9 9
Sarcoptes_scabiei 3 3
Tetranychus_urticae_   (Two-spotted spider mite)   5 5
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   6 6
Pristionchus_pacificus_ 11 11
Meloidogyne_incognita_   (Southern root-knot nematode)   5 5
Meloidogyne_hapla_ 3 3
Onchocerca_volvulus_22 7 7
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   7 7
Caenorhabditis_japonica_ 4 4
Caenorhabditis_brenneri_ 7 7
Caenorhabditis_remanei_ 3 3
Caenorhabditis_elegans_76_235   (Roundworm)   8 8
Caenorhabditis_briggsae_2 3 3
Trichinella_spiralis_22 3 3
Hymenolepis_microstoma_ 4 4
Echinococcus_multilocularis_ 3 3
Echinococcus_granulosus_ 2 2
Taenia_solium_   (Pork tapeworm)   3 3
Schistosoma_mansoni_ 2 2
Mnemiopsis_leidyi   (Sea walnut)   5 5
Thelohanellus_kitauei 2 2
Acropora_digitifera_v1.0 5 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   11 11
Hydra_vulgaris 11 11
Amphimedon_queenslandica 11 11
Trichoplax_adhaerens_ 6 6
Proterospongia_sp._ATCC_50818_ 5 5
Monosiga_brevicollis_ 2 2
Sphaeroforma_arctica_JP610_ 6 6
Capsaspora_owczarzaki_ATCC_30864_ 8 8
Conidiobolus_coronatus_NRRL28638_v1.0 7 7
Mortierella_verticillata_NRRL_6337_ 15 15
Phycomyces_blakesleeanus_ 13 13
Rhizopus_oryzae_RA_99-880_ 12 12
Mucor_circinelloides_ 12 12
Rhizomucor_miehei_CAU432_ 12 12
Malassezia_globosa_CBS_7966_ 4 4
Sporisorium_reilianum_22 2 2
Ustilago_maydis_ 2 2
Mixia_osmundae_IAM_14324_v1.0 6 6
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 4 4
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 4 4
Melampsora_laricis-populina_ 5 5
Rhodotorula_graminis_WP1_v1.0 5 5
Sporobolomyces_roseus_IAM_13481_ 4 4
Microbotryum_violaceum_22 7 7
Wallemia_sebi_v1.0 7 7
Sphaerobolus_stellatus_v1.0 11 11
Piloderma_croceum_F_1598_v1.0 10 10
Serpula_lacrymans_var._lacrymans_S7.9_ 4 4
Coniophora_puteana 8 8
Hydnomerulius_pinastri_v2.0 5 5
Paxillus_rubicundulus_Ve08.2h10_v1.0 6 6
Pisolithus_microcarpus_441_v1.0 8 8
Pisolithus_tinctorius_Marx_270_v1.0 6 6
Scleroderma_citrinum_Foug_A_v1.0 6 6
Coprinopsis_cinerea_okayama7_130_v3 6 6
Pleurotus_ostreatus_   (Oyster mushroom)   6 6
Amanita_thiersii_Skay4041_v1.0 5 5
Amanita_muscaria_Koide_v1.0   (Fly agaric)   9 9
Galerina_marginata_v1.0 6 6
Hebeloma_cylindrosporum_h7_v2.0 8 8
Laccaria_bicolor_S238N-H82_ 9 9
Agaricus_bisporus_var._bisporus_ 6 6
Schizophyllum_commune_ 5 5
Stereum_hirsutum_FP-91666_SS1__v1.0 6 6
Heterobasidion_annosum_ 5 5
Gloeophyllum_trabeumv1.0 6 6
Punctularia_strigosozonata_v1.0 10 10
Sebacina_vermifera_MAFF_305830_v1.0 6 6
Fomitiporia_mediterranea_v1.0 5 5
Tulasnella_calospora_AL13/4D_v1.0 8 8
Postia_placenta_ 8 8
Wolfiporia_cocos_MD-104_SS10__v1.0 8 8
Fomitopsis_pinicolav1.0 9 9
Fomitopsis_pinicola_FP-58527_SS1_v3.0 12 12
Phanerochaete_chrysosporium_RP-78_2.1 5 5
Dichomitus_squalens 6 6
Trametes_versicolor_v1.0 6 6
Tremella_mesenterica_   (Witches' butter)   4 4
Daldinia_eschscholzii_EC12_v1.0 4 4
Apiospora_montagnei_NRRL_25634_v1.0 4 4
Magnaporthe_poae_ATCC_64411_22 4 4
Magnaporthe_grisea_70-15_ 4 4
Podospora_anserina_ 4 4
Sporotrichum_thermophile_ATCC_42464_ 4 4
Thielavia_terrestris_NRRL_8126_ 4 4
Chaetomium_globosum_CBS_148.51_ 4 4
Neurospora_tetrasperma_ 4 4
Neurospora_discreta_FGSC_8579_ 4 4
Neurospora_crassa_OR74A_ 4 4
Cryphonectria_parasitica_   (Chestnut blight fungus)   4 4
Verticillium_albo-atrum_VaMs.102_ 3 3
Verticillium_dahliae_VdLs.17_ 4 4
Acremonium_alcalophilumv_1.0 4 4
Glomerella_graminicola_22 4 4
Fusarium_graminearum_ 4 4
Nectria_haematococca_mpVI_ 4 4
Fusarium_oxysporum_f._sp._lycopersici_4286_ 4 4
Fusarium_verticillioides_7600_ 4 4
Trichoderma_asperellum_CBS_433.97_v1.0 3 3
Trichoderma_atroviride_ 4 4
Trichoderma_citrinoviride_v1.0 4 4
Trichoderma_reesei_1.2 4 4
Trichoderma_virens_Gv29-8_ 4 4
Trichoderma_longibrachiatum_ATCC_18648_v1.0 4 4
Trichoderma_harzianum_CBS_226.95_v1.0 4 4
Amorphotheca_resinae_v1.0   (Creosote fungus)   4 4
Botrytis_cinerea_B05.10_ 4 4
Sclerotinia_sclerotiorum_ 4 4
Blumeria_graminis_22 3 3
Didymella_exigua_CBS_183.55_v1.0 4 4
Leptosphaeria_maculans_22 4 4
Setosphaeria_turcica_v1.0 4 4
Cochliobolus_miyabeanus_ATCC_44560_v1.0 4 4
Cochliobolus_victoriae_FI3_v1.0 4 4
Cochliobolus_carbonum_26-R-13_v1.0 4 4
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   4 4
Alternaria_brassicicola_ 4 4
Cochliobolus_lunatus_m118_v2.0 4 4
Pyrenophora_teres_f._teres_22 4 4
Pyrenophora_tritici-repentis_ 4 4
Stagonospora_nodorum_ 4 4
Mycosphaerella_graminicola_IPO323_ 4 4
Zasmidium_cellare_ATCC_36951_v1.0 4 4
Dothistroma_septosporum 4 4
Septoria_musiva_v1.0 4 4
Mycosphaerella_fijiensis_CIRAD86_ 3 3
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 4 4
Paracoccidioides_brasiliensis_Pb18_ 4 4
Coccidioides_posadasii_RMSCC_3488_ 4 4
Coccidioides_immitis_RS_ 4 4
Ajellomyces_dermatitidis_SLH14081_ 4 4
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 3 3
Microsporum_canis_CBS_113480_ 4 4
Trichophyton_equinum_CBS_127.97_ 4 4
Trichophyton_verrucosum_HKI_0517_ 4 4
Arthroderma_benhamiae_CBS_112371_ 4 4
Trichophyton_tonsurans_CBS_112818_ 4 4
Trichophyton_rubrum_CBS_118892_ 4 4
Uncinocarpus_reesii_1704_ 4 4
Aspergillus_zonatus_v1.0 4 4
Penicillium_chrysogenum_Wisconsin_54-1255_ 4 4
Penicillium_chrysogenum_v1.0 4 4
Aspergillus_acidus_v1.0 4 4
Aspergillus_fumigatus_Af293 4 4
Aspergillus_brasiliensis_v1.0 4 4
Aspergillus_nidulans_FGSC_A4_ 4 4
Aspergillus_sydowii_v1.0 4 4
Aspergillus_versicolor_v1.0 3 3
Aspergillus_glaucus 4 4
Aspergillus_carbonarius_ITEM_5010_ 4 4
Neosartorya_fischeri_NRRL_181_ 4 4
Aspergillus_terreus_NIH2624_ 4 4
Aspergillus_tubingensis_v1.0 4 4
Aspergillus_wentii_v1.0 4 4
Aspergillus_oryzae_RIB40_ 4 4
Aspergillus_niger_22 4 4
Aspergillus_niger_ATCC_1015_ 1 1
Aspergillus_flavus_NRRL3357_ 4 4
Aspergillus_clavatus_NRRL_1_ 4 4
Penicillium_marneffei_ATCC_18224_ 4 4
Tuber_melanosporum_Mel28_22 4 4
Tuber_melanosporum_Vittad_   (Perigord truffle)   4 4
Hansenula_polymorpha_v2.0 4 4
Dekkera_bruxellensis_CBS_2499_v2.0 3 3
Pichia_membranifaciensv1.0 5 5
Candida_tanzawaensis_NRRL_Y-17324__v1.0 3 3
Candida_dubliniensis_CD36_ 3 3
Candida_tropicalis_MYA-3404_ 3 3
Candida_parapsilosis_ 3 3
Candida_albicans_SC5314 3 3
Lodderomyces_elongisporus_NRRL_YB-4239_ 3 3
Babjeviella_inositovora_NRRL_Y-12698_v1.0 3 3
Pichia_stipitis_CBS_6054_ 3 3
Candida_guilliermondii_ATCC_6260_ 3 3
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 3 3
Debaromyces_hansenii 3 3
Wickerhamomyces_anomalus 4 4
Pichia_pastoris_GS115_ 3 3
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 2 2
Yarrowia_lipolytica_CLIB122 3 3
Candida_lusitaniae_ATCC_42720_ 3 3
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 3 3
Vanderwaltozyma_polyspora_DSM_70294_ 3 3
Candida_glabrata_CBS138 2 2
Kluyveromyces_thermotolerans_CBS_6340 2 2
Lachancea_kluyveri_ 3 3
Kluyveromyces_waltii 2 2
Ashbya_gossypii_ATCC_10895_ 2 2
Zygosaccharomyces_rouxii_ 2 2
Saccharomyces_mikatae_MIT 2 2
Saccharomyces_paradoxus_MIT 2 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   2 2
Saccharomyces_bayanus_MIT 2 2
Kluyveromyces_lactis 3 3
Schizosaccharomyces_cryophilus_OY26_22 3 3
Schizosaccharomyces_octosporus_yFS286_ 3 3
Schizosaccharomyces_japonicus_yFS275_ 3 3
Schizosaccharomyces_pombe   (Fission yeast)   3 3
Catenaria_anguillulae_PL171_v1.0 4 4
Allomyces_macrogynus_ATCC_38327_ 15 15
Spizellomyces_punctatus_DAOM_BR117_ 11 11
Dictyostelium_discoideum 5 5
Dictyostelium_purpureum_ 5 5
Entamoeba_dispar_1.2 1 1
Entamoeba_invadens_1.2 1 1
Entamoeba_histolytica_1 1 1
Selaginella_moellendorffii_ 42 42
Pinus_taeda   (Loblolly pine)   58 54
Picea_abies   (Norway spruce)   52 51
Eucalyptus_grandis_v201   (Rose gum)   108 108
Theobroma_cacao_B97-61/B2_v1   (Cacao)   65 65
Gossypium_raimondii_v221 341 341
Citrus_clementina_v165 105 105
Citrus_sinensis_v154   (Sweet orange)   140 140
Thellungiella_halophila_v173 92 92
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   143 143
Capsella_rubella_v183 94 94
Arabidopsis_lyrata_   (Lyrate rockcress)   86 86
Arabidopsis_thaliana_10   (Thale cress)   118 118
Carica_papaya_   (Papaya)   50 50
Medicago_truncatula_   (Barrel medic)   134 134
Phaseolus_vulgaris_v186   (French bean)   103 103
Glycine_max_v109   (Soybean)   218 218
Cucumis_sativus_v122   (Cucumber)   121 121
Fragaria_vesca_   (Wild strawberry)   69 69
Malus_domestica_v196   (Apple)   142 142
Prunus_persica_v139   (Peach)   74 74
Linum_usitatissimum_v200   (Flax)   115 115
Manihot_esculenta_v147   (Cassava)   123 122
Populus_trichocarpa_v156   (Black cottonwood)   139 139
Vitis_vinifera_   (Wine grape)   58 58
Mimulus_guttatus_v140   (Spotted monkey flower)   81 81
Solanum_lycopersicum_v.2.3   (Tomato)   73 72
Solanum_tuberosum_   (Potato)   113 113
Actinidia_chinensis_Hongyang_ 152 151
Aquilegia_coerulea_v195 102 102
Triticum_urartu_22 59 59
Triticum_aestivum_22   (Bread wheat)   185 185
Aegilops_tauschii_22 60 59
Brachypodium_distachyon_   (Stiff brome)   94 94
Oryza_barthii_22   (African wild rice)   99 98
Oryza_meridionalis_22 104 98
Oryza_glumaepatula_22 104 104
Oryza_glaberrima   (African rice)   72 72
Oryza_punctata_22 96 96
Oryza_nivara_22 125 124
Oryza_brachyantha_22   (Malo sina)   69 69
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   133 133
Oryza_sativa_v193   (Rice)   133 133
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   99 98
Panicum_virgatum_v202   (Switchgrass)   145 145
Setaria_italica_v164   (Foxtail millet)   108 108
Zea_mays_subsp._mays_   (Maize)   164 164
Zea_mays_v181   (Maize)   178 178
Sorghum_bicolor_   (Sorghum)   74 73
Musa_balbisiana   (Balbis banana)   131 131
Musa_acuminata_22   (Wild Malaysian banana)   132 132
Amborella_trichopoda_22 54 54
Physcomitrella_patens 25 25
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 1 1
Chlorella_variabilis_sp._NC64A_ 1 1
Chlorella_vulgaris_ 2 2
Volvox_carteri_f._nagariensis_ 2 2
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Ostreococcus_sp._RCC809_ 5 4
Ostreococcus_lucimarinus_CCE9901_ 3 2
Ostreococcus_tauri_ 5 4
Bathycoccus_prasinos_ 5 4
Micromonas_sp._RCC299_ 5 5
Micromonas_pusilla_CCMP1545_v3.0 7 5
Porphyridium_purpureum_02_2012 4 4
Thecamonas_trahens_ATCC_50062_ 9 9
Bigelowiella_natans_CCMP2755_22 14 14
Cyanophora_paradoxa_ 5 5
Leishmania_mexicana_2.4 1 1
Leishmania_major_strain_Friedlin_ 1 1
Leishmania_infantum_JPCM5_2.4 1 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1 1
Trypanosoma_vivax_ 4 4
Trypanosoma_cruzi_strain_CL_Brener 1 1
Trypanosoma_congolense_2.4 1 1
Trypanosoma_brucei_gambiense_v4.1 1 1
Trypanosoma_brucei_TREU927_v4.1 1 1
Ectocarpus_siliculosus 4 4
Aureococcus_anophagefferens_ 1 1
Albugo_laibachii_22 35 35
Pythium_iwayamai_DAOM_BR242034_22 8 8
Pythium_arrhenomanes_ATCC_12531_22 5 5
Pythium_ultimum_v1.7-2 7 7
Pythium_aphanidermatum_DAOM_BR444_22 5 5
Pythium_irregulare_DAOM_BR486_22 7 7
Pythium_vexans_DAOM_BR484_22 6 6
Phytophthora_ramorum_1.1   (Sudden oak death agent)   9 9
Phytophthora_sojae_1.1 9 9
Phytophthora_infestans_T30-4_ 7 7
Phytophthora_capsici_ 6 6
Hyaloperonospora_arabidopsidis_22 14 14
Phaeodactylum_tricornutumCCAP_1055/1 2 2
Fragilariopsis_cylindrus 3 3
Thalassiosira_pseudonana_CCMP1335 1 1
Perkinsus_marinus_ATCC_50983_ 9 9
Paramecium_tetraurelia_ 18 18
Tetrahymena_thermophila_SB210_1_ 5 5
Symbiodinium_minutum_clade_B1_v1.2 4 4
Naegleria_gruberi_ 15 15
Guillardia_theta_CCMP2712_v1.0_ 11 11
Emiliania_huxleyi_CCMP1516_ 2 2

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   43 43
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   10 10
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   4 4
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   9 9
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   6 6
Cryptococcus_neoformans_var._grubii_H99_ 4 4
Cryptococcus_neoformans_B-3501A_ 5 5
Cryptococcus_neoformans_JEC21_ 4 4
Paracoccidioides_brasiliensis_Pb01_ 4 4
Paracoccidioides_brasiliensis_Pb03_ 4 4
Coccidioides_posadasii_str._Silveira_ 4 4
Coccidioides_immitis_RMSCC_3703_ 4 4
Coccidioides_immitis_RMSCC_2394_ 4 4
Coccidioides_immitis_H538.4_ 4 4
Ajellomyces_dermatitidis_ER-3_ 4 4
Histoplasma_capsulatum_H143 3 3
Histoplasma_capsulatum_H88 4 4
Histoplasma_capsulatum_G186AR 4 4
Aspergillus_fumigatus_A1163_ 4 4
Candida_albicans_WO-1_ 3 3
Saccharomyces_cerevisiae_UC5 2 2
Saccharomyces_cerevisiae_PW5 1 1
Saccharomyces_cerevisiae_FL100 1 1
Saccharomyces_cerevisiae_CBS7960 1 1
Saccharomyces_cerevisiae_YJM269 1 1
Saccharomyces_cerevisiae_T7 2 2
Saccharomyces_cerevisiae_FostersB 1 1
Saccharomyces_cerevisiae_FostersO 2 2
Saccharomyces_cerevisiae_VL3 2 2
Saccharomyces_cerevisiae_LalvinQA23 2 2
Saccharomyces_cerevisiae_AWRI796 2 2
Saccharomyces_cerevisiae_Sigma1278b 2 2
Saccharomyces_cerevisiae_W303 2 2
Saccharomyces_cerevisiae_JAY291 2 2
Saccharomyces_cerevisiae_AWRI1631 2 2
Saccharomyces_cerevisiae_T73 1 1
Saccharomyces_cerevisiae_CLIB215 1 1
Saccharomyces_cerevisiae_YJM789_ 2 2
Saccharomyces_cerevisiae_YJM789 2 2
Saccharomyces_cerevisiae_RM11-1a 2 2
Saccharomyces_cerevisiae_RM11-1a_ 2 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   2 2
Schizosaccharomyces_pombe_972h-_ 3 3
Batrachochytrium_dendrobatidis_JEL423_ 8 8
Batrachochytrium_dendrobatidis_JAM81_ 6 6
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   65 64
Hordeum_vulgare_22   (Domesticated barley)   164 164
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   82 82
Trypanosoma_brucei_Lister_427_v4.1 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   19 19
Pan_troglodytes_69_2.1.4   (Chimpanzee)   16 16
Gorilla_gorilla_69_3.1   (Western gorilla)   16 16
Pongo_abelii_69_2   (Sumatran orangutan)   17 17
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   18 18
Macaca_mulatta_69_1   (Rhesus monkey)   17 17
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   21 21
Otolemur_garnettii_69_3   (Small-eared galago)   20 20
Microcebus_murinus_69_1   (Gray mouse lemur)   14 14
Rattus_norvegicus_69_3.4   (Norway rat)   22 22
Mus_musculus_69_38   (House mouse)   20 20
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   12 12
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   16 16
Cavia_porcellus_69_3   (Domestic guinea pig)   19 19
Oryctolagus_cuniculus_69_2   (Rabbit)   15 15
Ochotona_princeps_69   (American pika)   13 13
Tupaia_belangeri_69   (Northern tree shrew)   12 12
Sus_scrofa_69_10.2   (Pig)   19 19
Bos_taurus_69_3.1   (Cattle)   21 21
Vicugna_pacos_69_1   (Alpaca)   12 12
Tursiops_truncatus_69_1   (Bottlenose dolphin)   18 18
Mustela_putorius_furo_69_1.0   (Domestic ferret)   18 18
Ailuropoda_melanoleuca_69_1   (Giant panda)   20 20
Canis_familiaris_69_3.1   (Dog)   19 19
Felis_catus_69   (Domestic cat)   15 15
Equus_caballus_69_2   (Horse)   19 19
Myotis_lucifugus_69_2.0   (Little brown bat)   15 15
Pteropus_vampyrus_69_1   (Large flying fox)   16 16
Sorex_araneus_69_1   (European shrew)   9 9
Erinaceus_europaeus_69   (Western European hedgehog)   12 12
Procavia_capensis_69_1   (Cape rock hyrax)   15 15
Loxodonta_africana_69_3   (African savanna elephant)   18 18
Echinops_telfairi_69   (Small Madagascar hedgehog)   11 11
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   12 12
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   11 11
Macropus_eugenii_69_1.0   (Tammar wallaby)   15 15
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   17 17
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   21 21
Ornithorhynchus_anatinus_69_5   (Platypus)   15 15
Petromyzon_marinus_69_7.0   (Sea lamprey)   5 5
Meleagris_gallopavo_69_2   (Turkey)   17 17
Gallus_gallus_69_2   (Chicken)   17 17
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   20 20
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   18 18
Anolis_carolinensis_69_2.0   (Green anole)   16 16
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   21 21
Latimeria_chalumnae_69_1   (Coelacanth)   19 19
Gadus_morhua_69_1   (Atlantic cod)   16 16
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   20 20
Takifugu_rubripes_69_4   (Torafugu)   17 17
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   18 18
Oryzias_latipes_69_1   (Japanese medaka)   20 20
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   19 19
Oreochromis_niloticus_69_1.0   (Nile tilapia)   22 22
Danio_rerio_69_9   (Zebrafish)   24 24
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   7 7
Ciona_intestinalis_69   (Vase tunicate)   8 8
Drosophila_melanogaster_69_5   (Fruit fly)   5 5
Caenorhabditis_elegans_69_215   (Roundworm)   6 6
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   2 2
Arabidopsis_thaliana_10   (Thale cress)   85 85

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   73 73
Homo_sapiens__(NCBI_version)   (Human)   35 35
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   19 19
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   8 8
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   6 6
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2 2
Moniliophthora_perniciosa_FA553__(Genome_survey) 5 5
Picea_sitchensis__(Incomplete)   (Sitka spruce)   6 6
Lotus_japonicus__(Early_assembly) 58 58
Malus_x_domestica_(Duplicate)   (Apple)   142 142
Ricinus_communis__(Early_assembly)   (Castor bean)   58 58
Nicotiana_benthamiana_0.4.4_(Early_draft) 149 146
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   69 68
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   73 72
Phoenix_dactylifera__(Early_draft)   (Date palm)   43 43
NCBI_viral_sequences_(Viral) 5 5
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 263 263
Protozoadb_2010_08_(Protozoadb) 11 11
STRING_v9.0.5_(STRING) 1465 1463
Uniprot_2018_03_genome 21109 21065
NCBI_2017_08_genome 21163 21134
PDB_chains_(SCOP_1.75)_(PDB) 23 23
Protein_Data_Bank_(all_PDB_sequenc) 144 144
UniProt__viral_sequences_(Viral) 5 5
TargetDB__(Targets) 71 71

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