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Domain combinations for Cystatin/monellin superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Cystatin/monellin domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   63 47
Pan_troglodytes_76_2.1.4   (Chimpanzee)   28 22
Gorilla_gorilla_76_3.1   (Western gorilla)   34 25
Pongo_abelii_76_2   (Sumatran orangutan)   35 29
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   28 21
Papio_anubis_76   (Olive baboon)   34 25
Macaca_mulatta_76_1   (Rhesus monkey)   40 29
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   65 48
Otolemur_garnettii_76_3   (Small-eared galago)   26 20
Microcebus_murinus_76_1   (Gray mouse lemur)   29 23
Rattus_norvegicus_76_5.0   (Norway rat)   53 42
Mus_musculus_76_38   (House mouse)   80 58
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   17 14
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   34 27
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   30 23
Cavia_porcellus_76_3   (Domestic guinea pig)   28 23
Oryctolagus_cuniculus_76_2   (Rabbit)   33 26
Ochotona_princeps_76   (American pika)   18 14
Tupaia_belangeri_76   (Northern tree shrew)   19 14
Sus_scrofa_76_10.2   (Pig)   37 31
Bos_taurus_76_3.1   (Cattle)   51 42
Ovis_aries_76_3.1   (Sheep)   45 36
Vicugna_pacos_76_1   (Alpaca)   15 9
Tursiops_truncatus_76_1   (Bottlenose dolphin)   24 18
Mustela_putorius_furo_76_1.0   (Domestic ferret)   27 20
Ailuropoda_melanoleuca_76_1   (Giant panda)   30 22
Canis_familiaris_76_3.1   (Dog)   25 21
Felis_catus_76_6.2   (Domestic cat)   28 21
Equus_caballus_76_2   (Horse)   34 26
Myotis_lucifugus_76_2.0   (Little brown bat)   40 33
Pteropus_vampyrus_76_1   (Large flying fox)   23 17
Sorex_araneus_76_1   (European shrew)   21 13
Erinaceus_europaeus_76   (Western European hedgehog)   19 14
Procavia_capensis_76_1   (Cape rock hyrax)   18 13
Loxodonta_africana_76_3   (African savanna elephant)   31 24
Echinops_telfairi_76   (Small Madagascar hedgehog)   25 19
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   36 28
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   21 16
Macropus_eugenii_76_1.0   (Tammar wallaby)   9 6
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   26 21
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   25 21
Ornithorhynchus_anatinus_76_5   (Platypus)   30 24
Saccoglossus_kowalevskii_v3.0 2 2
Petromyzon_marinus_76_7.0   (Sea lamprey)   1 1
Meleagris_gallopavo_76_2   (Turkey)   14 13
Gallus_gallus_76_4   (Chicken)   24 17
Anas_platyrhynchos_76_1.0   (Mallard)   18 11
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   18 12
Ficedula_albicollis_76_1.0   (Collared flycatcher)   18 12
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   27 20
Anolis_carolinensis_76_2.0   (Green anole)   22 16
Xenopus_laevis_   (African clawed frog)   44 24
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   26 18
Latimeria_chalumnae_76_1   (Coelacanth)   19 12
Lepisosteus_oculatus_76   (Spotted gar)   24 19
Gadus_morhua_76_1   (Atlantic cod)   20 16
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   15 12
Takifugu_rubripes_76_4   (Torafugu)   25 18
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   22 16
Oryzias_latipes_76_1   (Japanese medaka)   28 23
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   23 18
Poecilia_formosa_76   (Amazon molly)   22 16
Oreochromis_niloticus_76_1.0   (Nile tilapia)   34 24
Astyanax_mexicanus_76   (Mexican tetra)   22 16
Danio_rerio_76_9   (Zebrafish)   44 32
Oikopleura_dioica 1 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   3 3
Adineta_vaga 7 7
Octopus_bimaculoides_280 2 2
Crassostrea_gigas_22   (Pacific oyster)   22 20
Lottia_gigantea_   (Owl limpet)   4 3
Helobdella_robusta_ 10 10
Capitella_sp._I_ 3 3
Danaus_plexippus_OGS1.0   (Monarch butterfly)   16 9
Heliconius_melpomene_   (Postman butterfly)   13 4
Bombyx_mori_   (Domestic silkworm)   8 2
Nasonia_vitripennis_   (Jewel wasp)   2 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2 1
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3 1
Linepithema_humile_v1.1   (Argentine ant)   2 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1 1
Atta_cephalotes_v1.1 2 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2 1
Lucilia_cuprina   (Australian sheep blowfly)   1 1
Drosophila_grimshawi_1.3 6 6
Drosophila_willistoni_1.3 6 6
Drosophila_pseudoobscura_2.13 4 4
Drosophila_persimilis_1.3 4 4
Drosophila_suzukii 7 6
Drosophila_yakuba_1.3 4 4
Drosophila_simulans_1.3 5 5
Drosophila_sechellia_1.3 8 8
Drosophila_melanogaster_76_5   (Fruit fly)   6 6
Drosophila_erecta_1.3 5 5
Drosophila_ananassae_1.3 5 5
Drosophila_virilis_1.2 5 5
Drosophila_mojavensis_1.3 9 9
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4 4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   6 3
Anopheles_darlingi_22   (American malaria mosquito)   5 2
Anopheles_gambiae_49_3j   (African malaria mosquito)   3 2
Tribolium_castaneum_3.0   (Red flour beetle)   9 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2 2
Acyrthosiphon_pisum_   (Pea aphid)   2 1
Rhodnius_prolixus_22 6 3
Daphnia_pulex_   (Common water flea)   27 14
Strigamia_maritima_22 3 3
Sarcoptes_scabiei 2 2
Tetranychus_urticae_   (Two-spotted spider mite)   26 26
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   13 13
Pristionchus_pacificus_ 2 2
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 6 6
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   11 11
Caenorhabditis_japonica_ 5 5
Caenorhabditis_brenneri_ 11 11
Caenorhabditis_remanei_ 6 6
Caenorhabditis_elegans_76_235   (Roundworm)   5 5
Caenorhabditis_briggsae_2 6 6
Trichinella_spiralis_22 5 5
Hymenolepis_microstoma_ 3 3
Echinococcus_multilocularis_ 3 3
Echinococcus_granulosus_ 3 3
Taenia_solium_   (Pork tapeworm)   3 3
Schistosoma_mansoni_ 7 7
Mnemiopsis_leidyi   (Sea walnut)   4 4
Thelohanellus_kitauei 5 5
Acropora_digitifera_v1.0 4 4
Nematostella_vectensis_1.0   (Starlet sea anemone)   3 3
Hydra_vulgaris 8 8
Amphimedon_queenslandica 7 7
Proterospongia_sp._ATCC_50818_ 2 2
Monosiga_brevicollis_ 1 1
Sphaeroforma_arctica_JP610_ 2 1
Capsaspora_owczarzaki_ATCC_30864_ 4 2
Mortierella_verticillata_NRRL_6337_ 2 2
Mucor_circinelloides_ 1 1
Aspergillus_zonatus_v1.0 2 2
Aspergillus_versicolor_v1.0 1 1
Aspergillus_oryzae_RIB40_ 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Dictyostelium_discoideum 3 3
Dictyostelium_purpureum_ 3 3
Selaginella_moellendorffii_ 4 4
Pinus_taeda   (Loblolly pine)   28 23
Picea_abies   (Norway spruce)   8 6
Eucalyptus_grandis_v201   (Rose gum)   24 21
Theobroma_cacao_B97-61/B2_v1   (Cacao)   9 7
Gossypium_raimondii_v221 21 16
Citrus_clementina_v165 23 19
Citrus_sinensis_v154   (Sweet orange)   15 14
Thellungiella_halophila_v173 18 17
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   46 42
Capsella_rubella_v183 16 14
Arabidopsis_lyrata_   (Lyrate rockcress)   38 35
Arabidopsis_thaliana_10   (Thale cress)   26 23
Carica_papaya_   (Papaya)   10 9
Medicago_truncatula_   (Barrel medic)   54 50
Phaseolus_vulgaris_v186   (French bean)   11 10
Glycine_max_v109   (Soybean)   24 21
Cucumis_sativus_v122   (Cucumber)   31 27
Fragaria_vesca_   (Wild strawberry)   23 21
Malus_domestica_v196   (Apple)   43 39
Prunus_persica_v139   (Peach)   16 15
Linum_usitatissimum_v200   (Flax)   12 10
Manihot_esculenta_v147   (Cassava)   16 12
Populus_trichocarpa_v156   (Black cottonwood)   15 11
Vitis_vinifera_   (Wine grape)   9 7
Mimulus_guttatus_v140   (Spotted monkey flower)   25 24
Solanum_lycopersicum_v.2.3   (Tomato)   13 9
Solanum_tuberosum_   (Potato)   71 44
Actinidia_chinensis_Hongyang_ 11 10
Aquilegia_coerulea_v195 22 18
Triticum_urartu_22 19 19
Triticum_aestivum_22   (Bread wheat)   36 34
Aegilops_tauschii_22 25 25
Brachypodium_distachyon_   (Stiff brome)   29 29
Oryza_barthii_22   (African wild rice)   21 17
Oryza_meridionalis_22 18 16
Oryza_glumaepatula_22 20 18
Oryza_glaberrima   (African rice)   5 5
Oryza_punctata_22 20 18
Oryza_nivara_22 22 18
Oryza_brachyantha_22   (Malo sina)   16 15
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   23 22
Oryza_sativa_v193   (Rice)   23 22
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   14 13
Panicum_virgatum_v202   (Switchgrass)   41 39
Setaria_italica_v164   (Foxtail millet)   16 15
Zea_mays_subsp._mays_   (Maize)   26 24
Zea_mays_v181   (Maize)   28 26
Sorghum_bicolor_   (Sorghum)   20 19
Musa_balbisiana   (Balbis banana)   16 13
Musa_acuminata_22   (Wild Malaysian banana)   10 9
Amborella_trichopoda_22 12 10
Physcomitrella_patens 10 6
Coccomyxa_subellipsoidea_sp._C-169_v2 2 1
Chlorella_variabilis_sp._NC64A_ 1 1
Chlorella_vulgaris_ 2 1
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Porphyridium_purpureum_02_2012 1 1
Thecamonas_trahens_ATCC_50062_ 5 2
Bigelowiella_natans_CCMP2755_22 1 1
Giardia_lamblia_2.3 1 1
Cyanophora_paradoxa_ 1 1
Albugo_laibachii_22 2 2
Pythium_iwayamai_DAOM_BR242034_22 6 5
Pythium_arrhenomanes_ATCC_12531_22 5 4
Pythium_ultimum_v1.7-2 4 4
Pythium_aphanidermatum_DAOM_BR444_22 6 6
Pythium_irregulare_DAOM_BR486_22 6 6
Pythium_vexans_DAOM_BR484_22 5 5
Phytophthora_ramorum_1.1   (Sudden oak death agent)   6 6
Phytophthora_sojae_1.1 5 5
Phytophthora_infestans_T30-4_ 7 7
Phytophthora_capsici_ 7 7
Hyaloperonospora_arabidopsidis_22 2 2
Fragilariopsis_cylindrus 3 3
Thalassiosira_pseudonana_CCMP1335 1 1
Perkinsus_marinus_ATCC_50983_ 3 3
Paramecium_tetraurelia_ 24 21
Tetrahymena_thermophila_SB210_1_ 16 10
Ichthyophthirius_multifiliis_strain_G5_ 2 2
Symbiodinium_minutum_clade_B1_v1.2 4 4
Naegleria_gruberi_ 6 5
Trichomonas_vaginalis_ 4 4
Guillardia_theta_CCMP2712_v1.0_ 2 2
Emiliania_huxleyi_CCMP1516_ 4 4
Microcystis_aeruginosa_NIES-843 1 1
Clostridium_difficile_630 1 1
Roseburia_hominis_A2-183 1 1
Clostridium_cellulovorans_743B 1 1
Caldicellulosiruptor_lactoaceticus_6A 2 2
Caldicellulosiruptor_kristjanssonii_177R1B 1 1
Thermoanaerobacter_mathranii_subsp._mathranii_str._A3 1 1
Carnobacterium_sp._17-4 2 1
Carnobacterium_sp._WN1359 2 1
Tetragenococcus_halophilus_NBRC_12172 2 1
Melissococcus_plutonius_DAT561 2 1
Enterococcus_sp._7L76 2 1
Enterococcus_hirae_ATCC_9790 2 1
Enterococcus_faecium_Aus0004 2 1
Enterococcus_faecalis_62 2 1
Weissella_koreensis_KACC_15510 2 1
Oenococcus_oeni_PSU-1 2 1
Leuconostoc_sp._C2 2 1
Leuconostoc_kimchii_IMSNU_11154 2 1
Leuconostoc_citreum_KM20 2 1
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 2 1
Leuconostoc_gasicomitatum_LMG_18811 2 1
Lactobacillus_casei_ATCC_334 2 1
Lactobacillus_kefiranofaciens_ZW3 2 1
Lactobacillus_crispatus_ST1 2 1
Lactobacillus_rhamnosus_Lc_705 2 1
Lactobacillus_johnsonii_FI9785 1 1
Lactobacillus_sanfranciscensis_TMW_1.1304 2 1
Lactobacillus_salivarius_CECT_5713 2 1
Lactobacillus_ruminis_ATCC_27782 2 1
Lactobacillus_fermentum_IFO_3956 2 1
Lactobacillus_amylovorus_GRL1118 2 1
Lactobacillus_sakei_subsp._sakei_23K 2 1
Lactobacillus_reuteri_DSM_20016 2 1
Lactobacillus_gasseri_ATCC_33323 1 1
Lactobacillus_plantarum_JDM1 2 1
Lactobacillus_helveticus_DPC_4571 2 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_BAA-365 1 1
Lactobacillus_buchneri_NRRL_B-30929 2 1
Lactobacillus_buchneri 2 1
Lactobacillus_brevis_ATCC_367 2 1
Lactobacillus_acidophilus_30SC 2 1
Pediococcus_claussenii_ATCC_BAA-344 2 1
Pediococcus_pentosaceus_ATCC_25745 2 1
Lactococcus_garvieae_ATCC_49156 2 1
Lactococcus_lactis_subsp._cremoris_MG1363 2 1
Streptococcus_intermedius_JTH08 2 1
Streptococcus_gallolyticus_UCN34 2 1
Streptococcus_pseudopneumoniae_IS7493 2 1
Streptococcus_pasteurianus_ATCC_43144 2 1
Streptococcus_equi_subsp._equi_4047 2 1
Streptococcus_infantarius_subsp._infantarius_CJ18 2 1
Streptococcus_macedonicus_ACA-DC_198 2 1
Streptococcus_mitis_B6 2 1
Streptococcus_parasanguinis_ATCC_15912 2 1
Streptococcus_pneumoniae_P1031 2 1
Streptococcus_thermophilus_LMD-9 2 1
Streptococcus_suis_P1/7 2 1
Streptococcus_sanguinis_SK36 2 1
Streptococcus_salivarius_57.I 2 1
Streptococcus_oralis_Uo5 2 1
Streptococcus_gordonii_str._Challis_substr._CH1 2 1
Brevibacillus_brevis_NBRC_100599 2 1
Paenibacillus_sp._JDR-2 2 1
Paenibacillus_terrae_HPL-003 2 1
Paenibacillus_mucilaginosus_3016 2 1
Paenibacillus_polymyxa_M1 2 1
Bacillus_selenitireducens_MLS10 2 1
Listeria_welshimeri_serovar_6b_str._SLCC5334 2 1
Listeria_innocua_Clip11262 2 1
Listeria_seeligeri_serovar_1/2b_str._SLCC3954 2 1
Listeria_monocytogenes_serotype_4b_str._CLIP_80459 2 1
Listeria_ivanovii_subsp._ivanovii_PAM_55 2 1
Geobacillus_thermoglucosidasius_C56-YS93 2 1
Lysinibacillus_sphaericus_C3-41 2 1
Oceanobacillus_iheyensis_HTE831 1 1
Anoxybacillus_flavithermus_WK1 2 1
Geobacillus_thermoleovorans_CCB_US3_UF5 2 1
Geobacillus_kaustophilus_HTA426 2 1
Geobacillus_sp._GHH01 2 1
Geobacillus_sp._WCH70 2 1
Geobacillus_thermodenitrificans_NG80-2 2 1
Halobacillus_halophilus_DSM_2266 2 1
Bacillus_sp._JS 2 1
Bacillus_sp._1NLA3E 2 1
Bacillus_amyloliquefaciens_FZB42 2 1
Bacillus_atrophaeus_1942 2 1
Bacillus_subtilis_subsp._subtilis_str._168 2 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 2 1
Bacillus_halodurans_C-125 2 1
Bacillus_weihenstephanensis_KBAB4 2 1
Bacillus_thuringiensis_str._Al_Hakam 2 1
Bacillus_cereus_03BB102 2 1
Bacillus_anthracis_str._A0248 2 1
Bacillus_pseudofirmus_OF4 2 1
Bacillus_clausii_KSM-K16 2 1
Bacillus_cellulosilyticus_DSM_2522 2 1
Bacillus_pumilus_SAFR-032 2 1
Bacillus_megaterium_DSM_319 2 1
Bacillus_coagulans_2-6 2 1
Staphylococcus_epidermidis_RP62A 1 1
Staphylococcus_carnosus_subsp._carnosus_TM300 1 1
Staphylococcus_aureus_subsp._aureus_JH1 2 2
Staphylococcus_aureus 2 2
Paludibacter_propionicigenes_WB4 1 1
Polaribacter_sp._MED152 3 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1 1
Fusobacterium_nucleatum_subsp._nucleatum_ATCC_25586 1 1
Geobacter_uraniireducens_Rf4 1 1
Geobacter_lovleyi_SZ 1 1
Rubrivivax_gelatinosus_IL144 1 1
Hirschia_baltica_ATCC_49814 1 1
Aeromonas_veronii_B565 1 1
Aeromonas_salmonicida_subsp._salmonicida_A449 1 1
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 1 1
Vibrio_fischeri_MJ11 1 1
Vibrio_sp._Ex25 3 3
Vibrio_harveyi_ATCC_BAA-1116 3 3
Vibrio_parahaemolyticus_RIMD_2210633 3 3
Vibrio_splendidus_LGP32 1 1
Vibrio_anguillarum_775 1 1
Vibrio_furnissii_NCTC_11218 1 1
Vibrio_vulnificus_MO6-24/O 1 1
Vibrio_cholerae_O395 1 1
Photobacterium_profundum_SS9 1 1
Shewanella_denitrificans_OS217 2 2
Shewanella_woodyi_ATCC_51908 1 1
Shewanella_violacea_DSS12 1 1
Nitrosococcus_halophilus_Nc4 1 1
Serratia_sp._ATCC_39006 1 1
Dickeya_dadantii_Ech703 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PC1 1 1
Citrobacter_rodentium_ICC168 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   56 36
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   6 6
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   18 4
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2 2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   4 4
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   8 6
Hordeum_vulgare_22   (Domesticated barley)   17 16
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   19 18
Crinalium_epipsammum_PCC_9333 1 1
Clostridium_difficile_BI1 1 1
Clostridium_difficile_R20291 1 1
Clostridium_difficile_CD196 1 1
Carnobacterium_maltaromaticum_LMA28 2 1
Melissococcus_plutonius_ATCC_35311 2 1
Enterococcus_mundtii_QU_25 3 2
Enterococcus_casseliflavus_EC20 2 1
Enterococcus_faecium_Aus0085 2 1
Enterococcus_faecium_NRRL_B-2354 2 1
Enterococcus_faecium_DO 2 1
Enterococcus_faecalis_str._Symbioflor_1 2 1
Enterococcus_faecalis_D32 2 1
Enterococcus_faecalis_OG1RF 2 1
Enterococcus_faecalis_V583 2 1
Leuconostoc_carnosum_JB16 2 1
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 2 1
Leuconostoc_gelidum_JB7 2 1
Lactobacillus_paracasei_subsp._paracasei_8700:2 2 1
Lactobacillus_casei_LOCK919 2 1
Lactobacillus_casei_W56 2 1
Lactobacillus_casei_LC2W 2 1
Lactobacillus_casei_BD-II 2 1
Lactobacillus_casei_BL23 2 1
Lactobacillus_casei_str._Zhang 2 1
Lactobacillus_rhamnosus_LOCK908 2 1
Lactobacillus_rhamnosus_LOCK900 2 1
Lactobacillus_rhamnosus_ATCC_8530 2 1
Lactobacillus_rhamnosus_GG 2 1
Lactobacillus_rhamnosus_GG 2 1
Lactobacillus_johnsonii_N6.2 1 1
Lactobacillus_johnsonii_DPC_6026 1 1
Lactobacillus_johnsonii_NCC_533 1 1
Lactobacillus_salivarius_UCC118 2 1
Lactobacillus_fermentum_F-6 2 1
Lactobacillus_amylovorus_GRL_1112 2 1
Lactobacillus_reuteri_TD1 2 1
Lactobacillus_reuteri_I5007 2 1
Lactobacillus_reuteri_JCM_1112 2 1
Lactobacillus_reuteri_SD2112 2 1
Lactobacillus_plantarum_16 2 1
Lactobacillus_plantarum_ZJ316 2 1
Lactobacillus_plantarum_subsp._plantarum_ST-III 2 1
Lactobacillus_plantarum_subsp._plantarum_P-8 2 1
Lactobacillus_plantarum_WCFS1 2 1
Lactobacillus_helveticus_R0052 2 1
Lactobacillus_helveticus_H10 2 1
Lactobacillus_helveticus_CNRZ32 2 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ND02 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_11842 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_2038 1 1
Lactobacillus_brevis_KB290 2 1
Lactobacillus_acidophilus_La-14 2 1
Lactobacillus_acidophilus_NCFM 2 1
Pediococcus_pentosaceus_SL4 2 1
Lactococcus_garvieae_Lg2 2 1
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 2 1
Lactococcus_lactis_subsp._lactis_IO-1 2 1
Lactococcus_lactis_subsp._lactis_CV56 2 1
Lactococcus_lactis_subsp._lactis_KF147 2 1
Lactococcus_lactis_subsp._lactis_Il1403 2 1
Lactococcus_lactis_subsp._cremoris_KW2 2 1
Lactococcus_lactis_subsp._cremoris_UC509.9 2 1
Lactococcus_lactis_subsp._cremoris_A76 2 1
Lactococcus_lactis_subsp._cremoris_NZ9000 2 1
Lactococcus_lactis_subsp._cremoris_SK11 2 1
Streptococcus_constellatus_subsp._pharyngis_C1050 2 1
Streptococcus_constellatus_subsp._pharyngis_C818 2 1
Streptococcus_constellatus_subsp._pharyngis_C232 2 1
Streptococcus_intermedius_B196 2 1
Streptococcus_intermedius_C270 2 1
Streptococcus_anginosus_C238 2 1
Streptococcus_anginosus_C1051 2 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 2 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 2 1
Streptococcus_lutetiensis_033 2 1
Streptococcus_equi_subsp._zooepidemicus_ATCC_35246 2 1
Streptococcus_equi_subsp._zooepidemicus_MGCS10565 2 1
Streptococcus_equi_subsp._zooepidemicus 2 1
Streptococcus_oligofermentans_AS_1.3089 1 1
Streptococcus_parasanguinis_FW213 2 1
Streptococcus_pneumoniae_A026 2 1
Streptococcus_pneumoniae_ST556 2 1
Streptococcus_pneumoniae_SPNA45 2 1
Streptococcus_pneumoniae_SPN994039 2 1
Streptococcus_pneumoniae_SPN994038 2 1
Streptococcus_pneumoniae_SPN034183 2 1
Streptococcus_pneumoniae_SPN034156 2 1
Streptococcus_pneumoniae_INV104 2 1
Streptococcus_pneumoniae_INV200 2 1
Streptococcus_pneumoniae_OXC141 2 1
Streptococcus_pneumoniae_gamPNI0373 2 1
Streptococcus_pneumoniae_AP200 2 1
Streptococcus_pneumoniae_ATCC_700669 2 1
Streptococcus_pneumoniae_TCH8431/19A 2 1
Streptococcus_pneumoniae_CGSP14 2 1
Streptococcus_pneumoniae_G54 2 1
Streptococcus_pneumoniae_JJA 2 1
Streptococcus_pneumoniae_70585 2 1
Streptococcus_pneumoniae_Hungary19A-6 2 1
Streptococcus_pneumoniae_Taiwan19F-14 2 1
Streptococcus_pneumoniae_D39 2 1
Streptococcus_pneumoniae_670-6B 2 1
Streptococcus_pneumoniae_R6 2 1
Streptococcus_pneumoniae_TIGR4 2 1
Streptococcus_thermophilus_MN-ZLW-002 2 1
Streptococcus_thermophilus_JIM_8232 2 1
Streptococcus_thermophilus_ND03 2 1
Streptococcus_thermophilus_CNRZ1066 2 1
Streptococcus_thermophilus_LMG_18311 2 1
Streptococcus_suis_T15 2 1
Streptococcus_suis_TL13 2 1
Streptococcus_suis_SC070731 2 1
Streptococcus_suis_S735 2 1
Streptococcus_suis_ST3 2 1
Streptococcus_suis_D9 2 1
Streptococcus_suis_SS12 2 1
Streptococcus_suis_D12 2 1
Streptococcus_suis_ST1 2 1
Streptococcus_suis_A7 2 1
Streptococcus_suis_JS14 2 1
Streptococcus_suis_BM407 2 1
Streptococcus_suis_SC84 2 1
Streptococcus_suis_GZ1 2 1
Streptococcus_suis_98HAH33 2 1
Streptococcus_suis_05ZYH33 2 1
Streptococcus_salivarius_CCHSS3 2 1
Streptococcus_salivarius_JIM8777 2 1
Thermobacillus_composti_KWC4 2 1
Paenibacillus_sp._Y412MC10 2 1
Paenibacillus_mucilaginosus_KNP414 2 1
Paenibacillus_mucilaginosus_K02 2 1
Paenibacillus_larvae_subsp._larvae_DSM_25430 2 1
Paenibacillus_polymyxa_CR1 2 1
Paenibacillus_polymyxa_SC2 2 1
Paenibacillus_polymyxa_E681 2 1
Listeria_monocytogenes_EGD_sequence 2 1
Listeria_monocytogenes_N53-1 2 1
Listeria_monocytogenes_La111 2 1
Listeria_monocytogenes_serotype_4b_str._LL195 2 1
Listeria_monocytogenes_07PF0776 2 1
Listeria_monocytogenes_M7 2 1
Listeria_monocytogenes_J1-220 2 1
Listeria_monocytogenes_J1816 2 1
Listeria_monocytogenes_SLCC2376 2 1
Listeria_monocytogenes_SLCC5850 2 1
Listeria_monocytogenes_ATCC_19117 2 1
Listeria_monocytogenes_L312 2 1
Listeria_monocytogenes_SLCC2479 2 1
Listeria_monocytogenes_SLCC7179 2 1
Listeria_monocytogenes_SLCC2540 2 1
Listeria_monocytogenes_SLCC2378 2 1
Listeria_monocytogenes_serotype_1/2b_str._SLCC2755 2 1
Listeria_monocytogenes_serotype_1/2c_str._SLCC2372 2 1
Listeria_monocytogenes_serotype_7_str._SLCC2482 2 1
Listeria_monocytogenes_08-5578 2 1
Listeria_monocytogenes_08-5923 2 1
Listeria_monocytogenes_L99 2 1
Listeria_monocytogenes_HCC23 2 1
Listeria_monocytogenes_10403S 2 1
Listeria_monocytogenes_J0161 2 1
Listeria_monocytogenes_Finland_1998 2 1
Listeria_monocytogenes_FSL_R2-561 2 1
Listeria_monocytogenes_serotype_4b_str._F2365 2 1
Listeria_monocytogenes_EGD-e 2 1
Geobacillus_sp._C56-T3 2 1
Geobacillus_sp._Y4.1MC1 2 1
Geobacillus_sp._Y412MC52 2 1
Geobacillus_sp._Y412MC61 2 1
Amphibacillus_xylanus_NBRC_15112 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 2 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 2 1
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 2 1
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 2 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 2 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 2 1
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 2 1
Bacillus_amyloliquefaciens_LFB112 2 1
Bacillus_amyloliquefaciens_CC178 2 1
Bacillus_amyloliquefaciens_Y2 2 1
Bacillus_amyloliquefaciens_IT-45 2 1
Bacillus_amyloliquefaciens_XH7 2 1
Bacillus_amyloliquefaciens_LL3 2 1
Bacillus_amyloliquefaciens_TA208 2 1
Bacillus_amyloliquefaciens_DSM_7 2 1
Bacillus_licheniformis_9945A 2 1
Bacillus_subtilis_PY79 2 1
Bacillus_subtilis_XF-1 2 1
Bacillus_subtilis_QB928 2 1
Bacillus_subtilis_BSn5 2 1
Bacillus_subtilis_subsp._subtilis_str._BAB-1 2 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 2 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 2 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 2 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 2 1
Bacillus_subtilis_subsp._spizizenii_str._W23 2 1
Bacillus_subtilis_subsp._natto_BEST195 2 1
Bacillus_licheniformis_DSM_13_=_ATCC_14580 2 1
Bacillus_infantis_NRRL_B-14911 2 1
Bacillus_cereus_subsp._cytotoxis_NVH_391-98 2 1
Bacillus_toyonensis_BCT-7112 2 1
Bacillus_thuringiensis_HD-771 2 1
Bacillus_thuringiensis_HD-789 2 1
Bacillus_thuringiensis_MC28 2 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 2 1
Bacillus_thuringiensis_YBT-1518 2 1
Bacillus_thuringiensis_Bt407 2 1
Bacillus_thuringiensis_serovar_konkukian_str._97-27 2 1
Bacillus_thuringiensis_serovar_kurstaki_str._HD73 2 1
Bacillus_thuringiensis_BMB171 2 1
Bacillus_thuringiensis_serovar_finitimus_YBT-020 2 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 2 1
Bacillus_cereus_FRI-35 2 1
Bacillus_cereus_biovar_anthracis_str._CI 2 1
Bacillus_cereus_AH820 2 1
Bacillus_cereus_AH187 2 1
Bacillus_cereus_B4264 2 1
Bacillus_cereus_G9842 2 1
Bacillus_cereus_Q1 2 1
Bacillus_cereus_F837/76 2 1
Bacillus_cereus_NC7401 2 1
Bacillus_cereus_E33L 2 1
Bacillus_cereus_ATCC_14579 2 1
Bacillus_cereus_ATCC_10987 2 1
Bacillus_anthracis_str._H9401 2 1
Bacillus_anthracis_str._CDC_684 2 1
Bacillus_anthracis_str._'Ames_Ancestor' 2 1
Bacillus_anthracis_str._Sterne 2 1
Bacillus_anthracis_str._Ames 2 1
Bacillus_megaterium_WSH-002 2 1
Bacillus_megaterium_QM_B1551 2 1
Bacillus_coagulans_36D1 2 1
Staphylococcus_aureus_subsp._aureus_MSHR1132 1 1
Staphylococcus_pasteuri_SP1 2 2
Staphylococcus_warneri_SG1 2 2
Staphylococcus_epidermidis_ATCC_12228 1 1
Staphylococcus_aureus_CA-347 2 2
Staphylococcus_aureus_Bmb9393 2 2
Staphylococcus_aureus_M1 2 2
Staphylococcus_aureus_08BA02176 2 2
Staphylococcus_aureus_ST228/18412 2 2
Staphylococcus_aureus_ST228/18341 2 2
Staphylococcus_aureus_ST228/16125 2 2
Staphylococcus_aureus_ST228/16035 2 2
Staphylococcus_aureus_ST228/15532 2 2
Staphylococcus_aureus_ST228/10497 2 2
Staphylococcus_aureus_ST228/10388 2 2
Staphylococcus_aureus_04-02981 2 2
Staphylococcus_aureus_RF122 2 2
Staphylococcus_aureus_subsp._aureus_Z172 2 2
Staphylococcus_aureus_subsp._aureus_6850 2 2
Staphylococcus_aureus_subsp._aureus_SA957 2 2
Staphylococcus_aureus_subsp._aureus_CN1 2 2
Staphylococcus_aureus_subsp._aureus_SA40 2 2
Staphylococcus_aureus_subsp._aureus_11819-97 2 2
Staphylococcus_aureus_subsp._aureus_M013 2 2
Staphylococcus_aureus_subsp._aureus_HO_5096_0412 2 2
Staphylococcus_aureus_subsp._aureus_VC40 2 2
Staphylococcus_aureus_subsp._aureus_T0131 2 2
Staphylococcus_aureus_subsp._aureus_LGA251 2 2
Staphylococcus_aureus_subsp._aureus_ECT-R_2 2 2
Staphylococcus_aureus_subsp._aureus_JKD6159 2 2
Staphylococcus_aureus_subsp._aureus_ED133 2 2
Staphylococcus_aureus_subsp._aureus_ED98 3 3
Staphylococcus_aureus_subsp._aureus_TW20 2 2
Staphylococcus_aureus_subsp._aureus_55/2053 2 2
Staphylococcus_aureus_subsp._aureus_TCH60 2 2
Staphylococcus_aureus_subsp._aureus_str._JKD6008 2 2
Staphylococcus_aureus_subsp._aureus_71193 2 2
Staphylococcus_aureus_subsp._aureus_S0385 2 2
Staphylococcus_aureus_subsp._aureus_str._Newman 2 2
Staphylococcus_aureus_subsp._aureus_Mu3 2 2
Staphylococcus_aureus_subsp._aureus_USA300_TCH1516 2 2
Staphylococcus_aureus_subsp._aureus_USA300_FPR3757 2 2
Staphylococcus_aureus_subsp._aureus_JH9 2 2
Staphylococcus_aureus_subsp._aureus_MSSA476 2 2
Staphylococcus_aureus_subsp._aureus_MRSA252 2 2
Staphylococcus_aureus_subsp._aureus_MW2 2 2
Staphylococcus_aureus_subsp._aureus_N315 2 2
Staphylococcus_aureus_subsp._aureus_Mu50 2 2
Staphylococcus_aureus_subsp._aureus_COL 2 2
Staphylococcus_aureus_subsp._aureus_NCTC_8325 2 2
Alistipes_shahii_WAL_8301 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1 1
Wolbachia_endosymbiont_of_Onchocerca_ochengi_str._Adamawa_Cameroon 1 1
Wolbachia_endosymbiont_strain_TRS_of_Brugia_malayi 1 1
Aeromonas_hydrophila_ML09-119 1 1
Vibrio_fischeri_ES114 1 1
Vibrio_sp._EJY3 1 1
Vibrio_parahaemolyticus_BB22OP 3 3
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 3 3
Vibrio_anguillarum_Listonella_anguillarum_M3 1 1
Vibrio_nigripulchritudo_VibrioScope 1 1
Vibrio_vulnificus_CMCP6 1 1
Vibrio_vulnificus_YJ016 1 1
Vibrio_cholerae_LMA3984-4 1 1
Vibrio_cholerae_M66-2 1 1
Vibrio_cholerae_O395 1 1
Vibrio_cholerae_IEC224 1 1
Vibrio_cholerae_O1_str._2010EL-1786 1 1
Vibrio_cholerae_MJ-1236 1 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1 1
Pectobacterium_carotovorum_subsp._carotovorum_PCC21 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   31 24
Pan_troglodytes_69_2.1.4   (Chimpanzee)   28 22
Gorilla_gorilla_69_3.1   (Western gorilla)   26 21
Pongo_abelii_69_2   (Sumatran orangutan)   34 28
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   28 21
Macaca_mulatta_69_1   (Rhesus monkey)   29 23
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   39 33
Otolemur_garnettii_69_3   (Small-eared galago)   26 20
Microcebus_murinus_69_1   (Gray mouse lemur)   29 23
Rattus_norvegicus_69_3.4   (Norway rat)   48 40
Mus_musculus_69_38   (House mouse)   45 37
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   17 14
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   33 26
Cavia_porcellus_69_3   (Domestic guinea pig)   27 22
Oryctolagus_cuniculus_69_2   (Rabbit)   28 23
Ochotona_princeps_69   (American pika)   18 14
Tupaia_belangeri_69   (Northern tree shrew)   19 14
Sus_scrofa_69_10.2   (Pig)   36 30
Bos_taurus_69_3.1   (Cattle)   45 38
Vicugna_pacos_69_1   (Alpaca)   15 9
Tursiops_truncatus_69_1   (Bottlenose dolphin)   24 18
Mustela_putorius_furo_69_1.0   (Domestic ferret)   27 20
Ailuropoda_melanoleuca_69_1   (Giant panda)   26 20
Canis_familiaris_69_3.1   (Dog)   24 20
Felis_catus_69   (Domestic cat)   20 16
Equus_caballus_69_2   (Horse)   31 25
Myotis_lucifugus_69_2.0   (Little brown bat)   40 33
Pteropus_vampyrus_69_1   (Large flying fox)   23 17
Sorex_araneus_69_1   (European shrew)   21 13
Erinaceus_europaeus_69   (Western European hedgehog)   19 14
Procavia_capensis_69_1   (Cape rock hyrax)   18 13
Loxodonta_africana_69_3   (African savanna elephant)   27 21
Echinops_telfairi_69   (Small Madagascar hedgehog)   25 19
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   21 15
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   21 16
Macropus_eugenii_69_1.0   (Tammar wallaby)   9 6
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   24 19
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   25 21
Ornithorhynchus_anatinus_69_5   (Platypus)   24 19
Petromyzon_marinus_69_7.0   (Sea lamprey)   1 1
Meleagris_gallopavo_69_2   (Turkey)   11 10
Gallus_gallus_69_2   (Chicken)   19 13
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   16 11
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   24 18
Anolis_carolinensis_69_2.0   (Green anole)   20 14
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   21 15
Latimeria_chalumnae_69_1   (Coelacanth)   17 11
Gadus_morhua_69_1   (Atlantic cod)   14 11
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   15 12
Takifugu_rubripes_69_4   (Torafugu)   20 14
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   18 13
Oryzias_latipes_69_1   (Japanese medaka)   24 20
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   23 18
Oreochromis_niloticus_69_1.0   (Nile tilapia)   28 21
Danio_rerio_69_9   (Zebrafish)   27 20
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1 1
Drosophila_melanogaster_69_5   (Fruit fly)   5 5
Caenorhabditis_elegans_69_215   (Roundworm)   4 4
Arabidopsis_thaliana_10   (Thale cress)   23 21

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   65 49
Homo_sapiens__(NCBI_version)   (Human)   39 27
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   45 37
Loa_loa_v3.3_(Request)   (Eye worm)   6 6
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   5 5
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   3 3
Picea_sitchensis__(Incomplete)   (Sitka spruce)   7 4
Lotus_japonicus__(Early_assembly) 11 9
Malus_x_domestica_(Duplicate)   (Apple)   43 39
Ricinus_communis__(Early_assembly)   (Castor bean)   7 5
Nicotiana_benthamiana_0.4.4_(Early_draft) 28 24
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   13 9
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   13 9
Phoenix_dactylifera__(Early_draft)   (Date palm)   6 4
Wolbachia_endosymbiont_of_Brugia_malayi_v1.0_(Broad_Institute) 1 1
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 3 3
NCBI_plasmid_sequences_(Plasmids) 2 2
UniProt__viral_sequences_(Viral) 44 44
TargetDB__(Targets) 71 48
Protozoadb_2010_08_(Protozoadb) 10 10
Protein_Data_Bank_(all_PDB_sequenc) 228 221
PDB_chains_(SCOP_1.75)_(PDB) 30 28
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 499 499
STRING_v9.0.5_(STRING) 1237 974
Uniprot_2018_03_genome 16386 11389
NCBI_2017_08_genome 67995 47960
NCBI_viral_sequences_(Viral) 3 3

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