SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for MHC antigen-recognition domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a MHC antigen-recognition domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   591 591
Pan_troglodytes_76_2.1.4   (Chimpanzee)   49 49
Gorilla_gorilla_76_3.1   (Western gorilla)   73 72
Pongo_abelii_76_2   (Sumatran orangutan)   53 53
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   37 37
Papio_anubis_76   (Olive baboon)   58 57
Macaca_mulatta_76_1   (Rhesus monkey)   117 117
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   113 113
Otolemur_garnettii_76_3   (Small-eared galago)   50 50
Microcebus_murinus_76_1   (Gray mouse lemur)   29 29
Rattus_norvegicus_76_5.0   (Norway rat)   79 79
Mus_musculus_76_38   (House mouse)   95 95
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   24 24
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   73 72
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   18 18
Cavia_porcellus_76_3   (Domestic guinea pig)   49 49
Oryctolagus_cuniculus_76_2   (Rabbit)   48 48
Ochotona_princeps_76   (American pika)   43 43
Tupaia_belangeri_76   (Northern tree shrew)   34 34
Sus_scrofa_76_10.2   (Pig)   50 50
Bos_taurus_76_3.1   (Cattle)   69 69
Ovis_aries_76_3.1   (Sheep)   70 70
Vicugna_pacos_76_1   (Alpaca)   15 15
Tursiops_truncatus_76_1   (Bottlenose dolphin)   13 13
Mustela_putorius_furo_76_1.0   (Domestic ferret)   39 39
Ailuropoda_melanoleuca_76_1   (Giant panda)   32 32
Canis_familiaris_76_3.1   (Dog)   36 36
Felis_catus_76_6.2   (Domestic cat)   36 36
Equus_caballus_76_2   (Horse)   75 75
Myotis_lucifugus_76_2.0   (Little brown bat)   125 125
Pteropus_vampyrus_76_1   (Large flying fox)   27 27
Sorex_araneus_76_1   (European shrew)   57 57
Erinaceus_europaeus_76   (Western European hedgehog)   31 31
Procavia_capensis_76_1   (Cape rock hyrax)   36 36
Loxodonta_africana_76_3   (African savanna elephant)   61 60
Echinops_telfairi_76   (Small Madagascar hedgehog)   34 34
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   106 104
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   19 19
Macropus_eugenii_76_1.0   (Tammar wallaby)   37 37
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   45 45
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   41 41
Ornithorhynchus_anatinus_76_5   (Platypus)   21 21
Meleagris_gallopavo_76_2   (Turkey)   11 11
Gallus_gallus_76_4   (Chicken)   36 36
Anas_platyrhynchos_76_1.0   (Mallard)   16 16
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   23 23
Ficedula_albicollis_76_1.0   (Collared flycatcher)   14 14
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   18 17
Anolis_carolinensis_76_2.0   (Green anole)   25 25
Xenopus_laevis_   (African clawed frog)   136 136
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   37 37
Latimeria_chalumnae_76_1   (Coelacanth)   41 41
Lepisosteus_oculatus_76   (Spotted gar)   15 15
Gadus_morhua_76_1   (Atlantic cod)   15 15
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   18 18
Takifugu_rubripes_76_4   (Torafugu)   39 39
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   68 68
Oryzias_latipes_76_1   (Japanese medaka)   39 39
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   27 26
Poecilia_formosa_76   (Amazon molly)   37 37
Oreochromis_niloticus_76_1.0   (Nile tilapia)   105 104
Astyanax_mexicanus_76   (Mexican tetra)   47 47
Danio_rerio_76_9   (Zebrafish)   54 54
Saccharomyces_mikatae_MIT 1 1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1 1
Gossypium_raimondii_v221 3 3
Citrus_clementina_v165 4 4
Citrus_sinensis_v154   (Sweet orange)   5 5
Thellungiella_halophila_v173 1 1
Carica_papaya_   (Papaya)   1 1
Medicago_truncatula_   (Barrel medic)   1 1
Phaseolus_vulgaris_v186   (French bean)   1 1
Glycine_max_v109   (Soybean)   2 2
Cucumis_sativus_v122   (Cucumber)   2 2
Fragaria_vesca_   (Wild strawberry)   1 1
Malus_domestica_v196   (Apple)   2 2
Prunus_persica_v139   (Peach)   1 1
Linum_usitatissimum_v200   (Flax)   2 2
Manihot_esculenta_v147   (Cassava)   1 1
Populus_trichocarpa_v156   (Black cottonwood)   1 1
Mimulus_guttatus_v140   (Spotted monkey flower)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Aquilegia_coerulea_v195 1 1
Musa_acuminata_22   (Wild Malaysian banana)   1 1
Amborella_trichopoda_22 1 1
Cyclobacterium_marinum_DSM_745 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   60 59
Saccharomyces_cerevisiae_AWRI796 1 1
Saccharomyces_cerevisiae_CLIB215 1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1 1
Ralstonia_solanacearum_FQY_4 1 1
Ralstonia_solanacearum_GMI1000 1 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   180 177
Pan_troglodytes_69_2.1.4   (Chimpanzee)   40 40
Gorilla_gorilla_69_3.1   (Western gorilla)   35 34
Pongo_abelii_69_2   (Sumatran orangutan)   50 50
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   33 32
Macaca_mulatta_69_1   (Rhesus monkey)   64 64
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   64 64
Otolemur_garnettii_69_3   (Small-eared galago)   47 47
Microcebus_murinus_69_1   (Gray mouse lemur)   29 29
Rattus_norvegicus_69_3.4   (Norway rat)   71 71
Mus_musculus_69_38   (House mouse)   53 53
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   24 24
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   69 68
Cavia_porcellus_69_3   (Domestic guinea pig)   41 41
Oryctolagus_cuniculus_69_2   (Rabbit)   45 45
Ochotona_princeps_69   (American pika)   43 43
Tupaia_belangeri_69   (Northern tree shrew)   34 34
Sus_scrofa_69_10.2   (Pig)   30 30
Bos_taurus_69_3.1   (Cattle)   61 61
Vicugna_pacos_69_1   (Alpaca)   15 15
Tursiops_truncatus_69_1   (Bottlenose dolphin)   13 13
Mustela_putorius_furo_69_1.0   (Domestic ferret)   39 39
Ailuropoda_melanoleuca_69_1   (Giant panda)   32 32
Canis_familiaris_69_3.1   (Dog)   29 29
Felis_catus_69   (Domestic cat)   30 30
Equus_caballus_69_2   (Horse)   66 66
Myotis_lucifugus_69_2.0   (Little brown bat)   120 120
Pteropus_vampyrus_69_1   (Large flying fox)   27 27
Sorex_araneus_69_1   (European shrew)   57 57
Erinaceus_europaeus_69   (Western European hedgehog)   31 31
Procavia_capensis_69_1   (Cape rock hyrax)   36 36
Loxodonta_africana_69_3   (African savanna elephant)   48 47
Echinops_telfairi_69   (Small Madagascar hedgehog)   34 34
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   31 31
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   19 19
Macropus_eugenii_69_1.0   (Tammar wallaby)   37 37
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   29 29
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   38 38
Ornithorhynchus_anatinus_69_5   (Platypus)   21 21
Meleagris_gallopavo_69_2   (Turkey)   10 10
Gallus_gallus_69_2   (Chicken)   22 22
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   23 23
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   16 15
Anolis_carolinensis_69_2.0   (Green anole)   26 26
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   31 31
Latimeria_chalumnae_69_1   (Coelacanth)   39 39
Gadus_morhua_69_1   (Atlantic cod)   15 15
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   16 16
Takifugu_rubripes_69_4   (Torafugu)   15 15
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   31 31
Oryzias_latipes_69_1   (Japanese medaka)   26 26
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   27 26
Oreochromis_niloticus_69_1.0   (Nile tilapia)   92 91
Danio_rerio_69_9   (Zebrafish)   40 40

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   581 581
Homo_sapiens__(NCBI_version)   (Human)   98 98
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   55 55
Lotus_japonicus__(Early_assembly) 1 1
Malus_x_domestica_(Duplicate)   (Apple)   2 2
Ricinus_communis__(Early_assembly)   (Castor bean)   1 1
Nicotiana_benthamiana_0.4.4_(Early_draft) 2 2
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
Phoenix_dactylifera__(Early_draft)   (Date palm)   2 2
NCBI_plasmid_sequences_(Plasmids) 1 1
Uniprot_2018_03_genome 96097 95956
UniProt__viral_sequences_(Viral) 119 119
TargetDB__(Targets) 139 139
NCBI_viral_sequences_(Viral) 25 25
PDB_chains_(SCOP_1.75)_(PDB) 190 190
STRING_v9.0.5_(STRING) 1111 1108
Protein_Data_Bank_(all_PDB_sequenc) 2197 2197
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 4659 4659
NCBI_2017_08_genome 12146 11968

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]