SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for UBC-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a UBC-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   251 246
Pan_troglodytes_76_2.1.4   (Chimpanzee)   58 56
Gorilla_gorilla_76_3.1   (Western gorilla)   65 64
Pongo_abelii_76_2   (Sumatran orangutan)   58 57
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   57 55
Papio_anubis_76   (Olive baboon)   63 60
Macaca_mulatta_76_1   (Rhesus monkey)   85 84
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   115 113
Otolemur_garnettii_76_3   (Small-eared galago)   64 63
Microcebus_murinus_76_1   (Gray mouse lemur)   48 47
Rattus_norvegicus_76_5.0   (Norway rat)   63 60
Mus_musculus_76_38   (House mouse)   150 146
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   50 46
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   55 54
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   117 115
Cavia_porcellus_76_3   (Domestic guinea pig)   60 58
Oryctolagus_cuniculus_76_2   (Rabbit)   68 67
Ochotona_princeps_76   (American pika)   47 45
Tupaia_belangeri_76   (Northern tree shrew)   50 49
Sus_scrofa_76_10.2   (Pig)   51 50
Bos_taurus_76_3.1   (Cattle)   65 63
Ovis_aries_76_3.1   (Sheep)   69 66
Vicugna_pacos_76_1   (Alpaca)   37 37
Tursiops_truncatus_76_1   (Bottlenose dolphin)   50 48
Mustela_putorius_furo_76_1.0   (Domestic ferret)   54 53
Ailuropoda_melanoleuca_76_1   (Giant panda)   52 52
Canis_familiaris_76_3.1   (Dog)   71 70
Felis_catus_76_6.2   (Domestic cat)   52 51
Equus_caballus_76_2   (Horse)   52 51
Myotis_lucifugus_76_2.0   (Little brown bat)   63 62
Pteropus_vampyrus_76_1   (Large flying fox)   49 48
Sorex_araneus_76_1   (European shrew)   42 41
Erinaceus_europaeus_76   (Western European hedgehog)   47 44
Procavia_capensis_76_1   (Cape rock hyrax)   48 46
Loxodonta_africana_76_3   (African savanna elephant)   72 72
Echinops_telfairi_76   (Small Madagascar hedgehog)   51 50
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   64 64
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   54 50
Macropus_eugenii_76_1.0   (Tammar wallaby)   46 44
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   59 59
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   59 57
Ornithorhynchus_anatinus_76_5   (Platypus)   49 49
Saccoglossus_kowalevskii_v3.0 82 77
Petromyzon_marinus_76_7.0   (Sea lamprey)   33 32
Meleagris_gallopavo_76_2   (Turkey)   49 49
Gallus_gallus_76_4   (Chicken)   47 47
Anas_platyrhynchos_76_1.0   (Mallard)   46 46
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   46 46
Ficedula_albicollis_76_1.0   (Collared flycatcher)   47 47
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   48 48
Anolis_carolinensis_76_2.0   (Green anole)   47 47
Xenopus_laevis_   (African clawed frog)   146 144
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   66 65
Latimeria_chalumnae_76_1   (Coelacanth)   69 68
Lepisosteus_oculatus_76   (Spotted gar)   63 61
Gadus_morhua_76_1   (Atlantic cod)   67 64
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   61 59
Takifugu_rubripes_76_4   (Torafugu)   96 89
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   78 76
Oryzias_latipes_76_1   (Japanese medaka)   69 67
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   62 60
Poecilia_formosa_76   (Amazon molly)   62 60
Oreochromis_niloticus_76_1.0   (Nile tilapia)   67 65
Astyanax_mexicanus_76   (Mexican tetra)   66 64
Danio_rerio_76_9   (Zebrafish)   101 98
Oikopleura_dioica 43 43
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   35 35
Ciona_intestinalis_76   (Vase tunicate)   35 35
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   60 58
Adineta_vaga 175 174
Octopus_bimaculoides_280 51 51
Crassostrea_gigas_22   (Pacific oyster)   51 47
Lottia_gigantea_   (Owl limpet)   50 50
Helobdella_robusta_ 41 41
Capitella_sp._I_ 56 55
Danaus_plexippus_OGS1.0   (Monarch butterfly)   35 35
Heliconius_melpomene_   (Postman butterfly)   32 32
Bombyx_mori_   (Domestic silkworm)   29 29
Nasonia_vitripennis_   (Jewel wasp)   35 35
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   49 49
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   34 34
Linepithema_humile_v1.1   (Argentine ant)   36 36
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   34 34
Solenopsis_invicta_v.2.2.3   (Red fire ant)   33 32
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   34 34
Atta_cephalotes_v1.1 37 37
Camponotus_floridanus_v3.3   (Florida carpenter ant)   38 38
Lucilia_cuprina   (Australian sheep blowfly)   30 30
Drosophila_grimshawi_1.3 45 44
Drosophila_willistoni_1.3 44 43
Drosophila_pseudoobscura_2.13 66 65
Drosophila_persimilis_1.3 57 56
Drosophila_suzukii 44 41
Drosophila_yakuba_1.3 44 43
Drosophila_simulans_1.3 46 44
Drosophila_sechellia_1.3 46 44
Drosophila_melanogaster_76_5   (Fruit fly)   84 82
Drosophila_erecta_1.3 44 43
Drosophila_ananassae_1.3 47 46
Drosophila_virilis_1.2 47 46
Drosophila_mojavensis_1.3 44 44
Megaselia_scalaris_22 15 15
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   41 41
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   38 37
Anopheles_darlingi_22   (American malaria mosquito)   22 22
Anopheles_gambiae_49_3j   (African malaria mosquito)   37 37
Tribolium_castaneum_3.0   (Red flour beetle)   39 39
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   36 36
Acyrthosiphon_pisum_   (Pea aphid)   39 39
Rhodnius_prolixus_22 37 37
Daphnia_pulex_   (Common water flea)   37 37
Strigamia_maritima_22 41 39
Sarcoptes_scabiei 27 27
Tetranychus_urticae_   (Two-spotted spider mite)   37 37
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   39 37
Pristionchus_pacificus_ 31 31
Meloidogyne_incognita_   (Southern root-knot nematode)   60 60
Meloidogyne_hapla_ 29 29
Onchocerca_volvulus_22 36 35
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   39 39
Caenorhabditis_japonica_ 28 28
Caenorhabditis_brenneri_ 48 48
Caenorhabditis_remanei_ 33 33
Caenorhabditis_elegans_76_235   (Roundworm)   45 45
Caenorhabditis_briggsae_2 35 35
Trichinella_spiralis_22 30 29
Hymenolepis_microstoma_ 40 40
Echinococcus_multilocularis_ 38 38
Echinococcus_granulosus_ 38 38
Taenia_solium_   (Pork tapeworm)   42 42
Schistosoma_mansoni_ 46 46
Mnemiopsis_leidyi   (Sea walnut)   32 32
Thelohanellus_kitauei 14 14
Acropora_digitifera_v1.0 46 46
Nematostella_vectensis_1.0   (Starlet sea anemone)   57 57
Hydra_vulgaris 39 39
Amphimedon_queenslandica 69 69
Trichoplax_adhaerens_ 42 41
Proterospongia_sp._ATCC_50818_ 44 44
Monosiga_brevicollis_ 34 34
Sphaeroforma_arctica_JP610_ 26 26
Capsaspora_owczarzaki_ATCC_30864_ 32 32
Conidiobolus_coronatus_NRRL28638_v1.0 16 16
Mortierella_verticillata_NRRL_6337_ 30 29
Phycomyces_blakesleeanus_ 27 27
Rhizopus_oryzae_RA_99-880_ 31 31
Mucor_circinelloides_ 27 27
Rhizomucor_miehei_CAU432_ 25 25
Malassezia_globosa_CBS_7966_ 30 30
Sporisorium_reilianum_22 22 22
Ustilago_maydis_ 21 21
Mixia_osmundae_IAM_14324_v1.0 24 24
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 24 24
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 23 23
Melampsora_laricis-populina_ 22 22
Rhodotorula_graminis_WP1_v1.0 23 23
Sporobolomyces_roseus_IAM_13481_ 19 19
Microbotryum_violaceum_22 26 26
Wallemia_sebi_v1.0 20 20
Sphaerobolus_stellatus_v1.0 31 31
Piloderma_croceum_F_1598_v1.0 30 30
Serpula_lacrymans_var._lacrymans_S7.9_ 24 24
Coniophora_puteana 25 25
Hydnomerulius_pinastri_v2.0 26 26
Paxillus_rubicundulus_Ve08.2h10_v1.0 24 24
Pisolithus_microcarpus_441_v1.0 30 30
Pisolithus_tinctorius_Marx_270_v1.0 27 27
Scleroderma_citrinum_Foug_A_v1.0 26 26
Coprinopsis_cinerea_okayama7_130_v3 28 28
Pleurotus_ostreatus_   (Oyster mushroom)   27 27
Amanita_thiersii_Skay4041_v1.0 25 25
Amanita_muscaria_Koide_v1.0   (Fly agaric)   26 26
Galerina_marginata_v1.0 31 31
Hebeloma_cylindrosporum_h7_v2.0 29 29
Laccaria_bicolor_S238N-H82_ 27 27
Agaricus_bisporus_var._bisporus_ 24 24
Schizophyllum_commune_ 28 28
Stereum_hirsutum_FP-91666_SS1__v1.0 27 27
Heterobasidion_annosum_ 24 24
Gloeophyllum_trabeumv1.0 27 27
Punctularia_strigosozonata_v1.0 24 24
Sebacina_vermifera_MAFF_305830_v1.0 29 29
Fomitiporia_mediterranea_v1.0 25 25
Tulasnella_calospora_AL13/4D_v1.0 26 26
Postia_placenta_ 41 41
Wolfiporia_cocos_MD-104_SS10__v1.0 27 27
Fomitopsis_pinicolav1.0 27 27
Fomitopsis_pinicola_FP-58527_SS1_v3.0 26 26
Phanerochaete_chrysosporium_RP-78_2.1 23 23
Dichomitus_squalens 26 26
Trametes_versicolor_v1.0 26 26
Tremella_mesenterica_   (Witches' butter)   25 25
Daldinia_eschscholzii_EC12_v1.0 29 28
Apiospora_montagnei_NRRL_25634_v1.0 32 31
Magnaporthe_poae_ATCC_64411_22 24 23
Magnaporthe_grisea_70-15_ 28 28
Podospora_anserina_ 26 25
Sporotrichum_thermophile_ATCC_42464_ 29 28
Thielavia_terrestris_NRRL_8126_ 28 27
Chaetomium_globosum_CBS_148.51_ 28 27
Neurospora_tetrasperma_ 25 24
Neurospora_discreta_FGSC_8579_ 24 23
Neurospora_crassa_OR74A_ 28 26
Cryphonectria_parasitica_   (Chestnut blight fungus)   28 27
Verticillium_albo-atrum_VaMs.102_ 26 25
Verticillium_dahliae_VdLs.17_ 30 29
Acremonium_alcalophilumv_1.0 27 26
Glomerella_graminicola_22 30 29
Fusarium_graminearum_ 28 27
Nectria_haematococca_mpVI_ 29 28
Fusarium_oxysporum_f._sp._lycopersici_4286_ 29 28
Fusarium_verticillioides_7600_ 26 25
Trichoderma_asperellum_CBS_433.97_v1.0 27 26
Trichoderma_atroviride_ 27 26
Trichoderma_citrinoviride_v1.0 27 26
Trichoderma_reesei_1.2 28 27
Trichoderma_virens_Gv29-8_ 27 26
Trichoderma_longibrachiatum_ATCC_18648_v1.0 27 26
Trichoderma_harzianum_CBS_226.95_v1.0 27 26
Amorphotheca_resinae_v1.0   (Creosote fungus)   28 27
Botrytis_cinerea_B05.10_ 27 26
Sclerotinia_sclerotiorum_ 29 29
Blumeria_graminis_22 22 22
Didymella_exigua_CBS_183.55_v1.0 31 30
Leptosphaeria_maculans_22 30 29
Setosphaeria_turcica_v1.0 34 33
Cochliobolus_miyabeanus_ATCC_44560_v1.0 31 30
Cochliobolus_victoriae_FI3_v1.0 32 31
Cochliobolus_carbonum_26-R-13_v1.0 31 30
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   30 29
Alternaria_brassicicola_ 32 31
Cochliobolus_lunatus_m118_v2.0 34 33
Pyrenophora_teres_f._teres_22 33 32
Pyrenophora_tritici-repentis_ 30 29
Stagonospora_nodorum_ 35 34
Mycosphaerella_graminicola_IPO323_ 34 33
Zasmidium_cellare_ATCC_36951_v1.0 33 32
Dothistroma_septosporum 35 34
Septoria_musiva_v1.0 31 30
Mycosphaerella_fijiensis_CIRAD86_ 30 29
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 33 32
Paracoccidioides_brasiliensis_Pb18_ 26 25
Coccidioides_posadasii_RMSCC_3488_ 29 28
Coccidioides_immitis_RS_ 30 29
Ajellomyces_dermatitidis_SLH14081_ 28 27
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 27 25
Microsporum_canis_CBS_113480_ 28 27
Trichophyton_equinum_CBS_127.97_ 28 27
Trichophyton_verrucosum_HKI_0517_ 22 22
Arthroderma_benhamiae_CBS_112371_ 22 21
Trichophyton_tonsurans_CBS_112818_ 28 27
Trichophyton_rubrum_CBS_118892_ 29 28
Uncinocarpus_reesii_1704_ 25 24
Aspergillus_zonatus_v1.0 29 28
Penicillium_chrysogenum_Wisconsin_54-1255_ 29 28
Penicillium_chrysogenum_v1.0 29 28
Aspergillus_acidus_v1.0 31 30
Aspergillus_fumigatus_Af293 29 28
Aspergillus_brasiliensis_v1.0 31 30
Aspergillus_nidulans_FGSC_A4_ 30 29
Aspergillus_sydowii_v1.0 30 29
Aspergillus_versicolor_v1.0 30 29
Aspergillus_glaucus 29 28
Aspergillus_carbonarius_ITEM_5010_ 31 30
Neosartorya_fischeri_NRRL_181_ 30 29
Aspergillus_terreus_NIH2624_ 29 28
Aspergillus_tubingensis_v1.0 31 30
Aspergillus_wentii_v1.0 31 30
Aspergillus_oryzae_RIB40_ 27 27
Aspergillus_niger_22 30 29
Aspergillus_niger_ATCC_1015_ 21 21
Aspergillus_flavus_NRRL3357_ 26 25
Aspergillus_clavatus_NRRL_1_ 30 29
Penicillium_marneffei_ATCC_18224_ 35 35
Tuber_melanosporum_Mel28_22 27 26
Tuber_melanosporum_Vittad_   (Perigord truffle)   27 26
Hansenula_polymorpha_v2.0 19 19
Dekkera_bruxellensis_CBS_2499_v2.0 19 19
Pichia_membranifaciensv1.0 19 19
Candida_tanzawaensis_NRRL_Y-17324__v1.0 19 19
Candida_dubliniensis_CD36_ 19 19
Candida_tropicalis_MYA-3404_ 20 19
Candida_parapsilosis_ 18 18
Candida_albicans_SC5314 19 19
Lodderomyces_elongisporus_NRRL_YB-4239_ 19 19
Babjeviella_inositovora_NRRL_Y-12698_v1.0 21 21
Pichia_stipitis_CBS_6054_ 19 19
Candida_guilliermondii_ATCC_6260_ 18 18
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 19 19
Debaromyces_hansenii 19 19
Wickerhamomyces_anomalus 23 23
Pichia_pastoris_GS115_ 19 19
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 16 16
Yarrowia_lipolytica_CLIB122 23 23
Candida_lusitaniae_ATCC_42720_ 18 18
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 19 19
Vanderwaltozyma_polyspora_DSM_70294_ 18 18
Candida_glabrata_CBS138 17 17
Kluyveromyces_thermotolerans_CBS_6340 19 19
Lachancea_kluyveri_ 19 19
Kluyveromyces_waltii 18 18
Ashbya_gossypii_ATCC_10895_ 17 17
Zygosaccharomyces_rouxii_ 19 19
Saccharomyces_mikatae_MIT 18 18
Saccharomyces_paradoxus_MIT 19 19
Saccharomyces_cerevisiae_76   (Baker's yeast)   19 19
Saccharomyces_bayanus_MIT 19 19
Kluyveromyces_lactis 18 18
Schizosaccharomyces_cryophilus_OY26_22 18 18
Schizosaccharomyces_octosporus_yFS286_ 18 18
Schizosaccharomyces_japonicus_yFS275_ 19 19
Schizosaccharomyces_pombe   (Fission yeast)   19 19
Catenaria_anguillulae_PL171_v1.0 35 33
Allomyces_macrogynus_ATCC_38327_ 57 54
Spizellomyces_punctatus_DAOM_BR117_ 34 33
Dictyostelium_discoideum 38 37
Dictyostelium_purpureum_ 39 38
Entamoeba_dispar_1.2 26 26
Entamoeba_invadens_1.2 22 22
Entamoeba_histolytica_1 26 26
Selaginella_moellendorffii_ 73 73
Pinus_taeda   (Loblolly pine)   126 114
Picea_abies   (Norway spruce)   41 40
Eucalyptus_grandis_v201   (Rose gum)   87 87
Theobroma_cacao_B97-61/B2_v1   (Cacao)   54 54
Gossypium_raimondii_v221 296 290
Citrus_clementina_v165 113 113
Citrus_sinensis_v154   (Sweet orange)   138 138
Thellungiella_halophila_v173 176 176
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   108 108
Capsella_rubella_v183 66 66
Arabidopsis_lyrata_   (Lyrate rockcress)   64 64
Arabidopsis_thaliana_10   (Thale cress)   94 94
Carica_papaya_   (Papaya)   43 43
Medicago_truncatula_   (Barrel medic)   109 108
Phaseolus_vulgaris_v186   (French bean)   61 61
Glycine_max_v109   (Soybean)   178 178
Cucumis_sativus_v122   (Cucumber)   73 73
Fragaria_vesca_   (Wild strawberry)   63 63
Malus_domestica_v196   (Apple)   149 146
Prunus_persica_v139   (Peach)   72 71
Linum_usitatissimum_v200   (Flax)   85 85
Manihot_esculenta_v147   (Cassava)   98 98
Populus_trichocarpa_v156   (Black cottonwood)   104 104
Vitis_vinifera_   (Wine grape)   49 49
Mimulus_guttatus_v140   (Spotted monkey flower)   71 71
Solanum_lycopersicum_v.2.3   (Tomato)   69 68
Solanum_tuberosum_   (Potato)   103 102
Actinidia_chinensis_Hongyang_ 83 81
Aquilegia_coerulea_v195 80 80
Triticum_urartu_22 56 56
Triticum_aestivum_22   (Bread wheat)   210 210
Aegilops_tauschii_22 73 70
Brachypodium_distachyon_   (Stiff brome)   86 86
Oryza_barthii_22   (African wild rice)   96 84
Oryza_meridionalis_22 76 69
Oryza_glumaepatula_22 87 76
Oryza_glaberrima   (African rice)   49 49
Oryza_punctata_22 79 74
Oryza_nivara_22 87 84
Oryza_brachyantha_22   (Malo sina)   55 55
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   95 95
Oryza_sativa_v193   (Rice)   95 95
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   83 80
Panicum_virgatum_v202   (Switchgrass)   163 163
Setaria_italica_v164   (Foxtail millet)   87 87
Zea_mays_subsp._mays_   (Maize)   187 187
Zea_mays_v181   (Maize)   216 215
Sorghum_bicolor_   (Sorghum)   59 56
Musa_balbisiana   (Balbis banana)   86 82
Musa_acuminata_22   (Wild Malaysian banana)   100 99
Amborella_trichopoda_22 45 45
Physcomitrella_patens 49 49
Coccomyxa_subellipsoidea_sp._C-169_v2 30 29
Asterochloris_sp._Cgr/DA1pho_v1.0 22 22
Chlorella_variabilis_sp._NC64A_ 32 31
Chlorella_vulgaris_ 30 29
Volvox_carteri_f._nagariensis_ 26 26
Volvox_carteri_v199 26 26
Chlamydomonas_reinhardtii_4.0 28 28
Ostreococcus_sp._RCC809_ 22 22
Ostreococcus_lucimarinus_CCE9901_ 18 18
Ostreococcus_tauri_ 22 22
Bathycoccus_prasinos_ 23 22
Micromonas_sp._RCC299_ 24 23
Micromonas_pusilla_CCMP1545_v3.0 26 26
Cyanidioschyzon_merolae_strain_10D_22 19 19
Cyanidioschyzon_merolae 20 20
Porphyridium_purpureum_02_2012 23 23
Thecamonas_trahens_ATCC_50062_ 37 36
Bigelowiella_natans_CCMP2755_22 46 46
Giardia_lamblia_2.3 13 13
Cyanophora_paradoxa_ 27 27
Leishmania_mexicana_2.4 21 21
Leishmania_major_strain_Friedlin_ 20 20
Leishmania_infantum_JPCM5_2.4 20 20
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 24 24
Trypanosoma_vivax_ 20 20
Trypanosoma_cruzi_strain_CL_Brener 26 26
Trypanosoma_congolense_2.4 22 22
Trypanosoma_brucei_gambiense_v4.1 20 20
Trypanosoma_brucei_TREU927_v4.1 21 21
Ectocarpus_siliculosus 41 40
Aureococcus_anophagefferens_ 27 27
Albugo_laibachii_22 24 24
Pythium_iwayamai_DAOM_BR242034_22 31 30
Pythium_arrhenomanes_ATCC_12531_22 28 28
Pythium_ultimum_v1.7-2 27 27
Pythium_aphanidermatum_DAOM_BR444_22 26 26
Pythium_irregulare_DAOM_BR486_22 27 27
Pythium_vexans_DAOM_BR484_22 28 27
Phytophthora_ramorum_1.1   (Sudden oak death agent)   26 26
Phytophthora_sojae_1.1 25 25
Phytophthora_infestans_T30-4_ 28 28
Phytophthora_capsici_ 22 22
Hyaloperonospora_arabidopsidis_22 25 25
Phaeodactylum_tricornutumCCAP_1055/1 23 23
Fragilariopsis_cylindrus 43 43
Thalassiosira_pseudonana_CCMP1335 25 25
Perkinsus_marinus_ATCC_50983_ 52 51
Paramecium_tetraurelia_ 82 82
Tetrahymena_thermophila_SB210_1_ 50 50
Ichthyophthirius_multifiliis_strain_G5_ 30 30
Cryptosporidium_hominis 9 9
Cryptosporidium_muris 18 18
Cryptosporidium_parvum_Iowa_II 17 17
Neospora_caninum 20 20
Toxoplasma_gondii_VEG 21 21
Toxoplasma_gondii_ME49 21 21
Toxoplasma_gondii_GT1 21 21
Babesia_bovis_T2Bo_ 34 34
Theileria_parva__ 14 14
Theileria_annulata 15 15
Plasmodium_falciparum_3D7_ 18 18
Plasmodium_vivax_SaI-1_7.0 17 17
Plasmodium_knowlesi_strain_H_ 17 17
Plasmodium_yoelii_ssp._yoelii_1_ 16 16
Plasmodium_chabaudi_ 17 17
Plasmodium_berghei_ANKA_ 17 17
Symbiodinium_minutum_clade_B1_v1.2 70 68
Naegleria_gruberi_ 40 40
Trichomonas_vaginalis_ 48 48
Guillardia_theta_CCMP2712_v1.0_ 41 40
Emiliania_huxleyi_CCMP1516_ 76 73
Acaryochloris_marina_MBIC11017 1 1
Gloeocapsa_sp._PCC_7428 1 1
Rivularia_sp._PCC_7116 1 1
Frankia_alni_ACN14a 1 1
Streptomyces_scabiei_87.22 2 2
Actinoplanes_missouriensis_431 1 1
Arthrobacter_sp._FB24 1 1
Flexibacter_litoralis_DSM_6794 1 1
Runella_slithyformis_DSM_19594 1 1
Isosphaera_pallida_ATCC_43644 1 1
Pirellula_staleyi_DSM_6068 2 2
Turneriella_parva_DSM_21527 1 1
Candidatus_Chloracidobacterium_thermophilum_B 1 1
Granulicella_mallensis_MP5ACTX8 2 2
Syntrophus_aciditrophicus_SB 1 1
Desulfotalea_psychrophila_LSv54 1 1
Desulfobulbus_propionicus_DSM_2032 1 1
Desulfomicrobium_baculatum_DSM_4028 1 1
Pusillimonas_sp._T7-7 1 1
Magnetococcus_marinus_MC-1 1 1
Sphingomonas_sp._MM-1 1 1
Roseobacter_denitrificans_OCh_114 1 1
Parvibaculum_lavamentivorans_DS-1 1 1
Candidatus_Caldiarchaeum_subterraneum 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   138 135
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   63 61
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   39 39
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   40 40
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   38 38
Cryptococcus_neoformans_var._grubii_H99_ 25 25
Cryptococcus_neoformans_B-3501A_ 24 24
Cryptococcus_neoformans_JEC21_ 23 23
Paracoccidioides_brasiliensis_Pb01_ 26 25
Paracoccidioides_brasiliensis_Pb03_ 25 23
Coccidioides_posadasii_str._Silveira_ 29 28
Coccidioides_immitis_RMSCC_3703_ 27 26
Coccidioides_immitis_RMSCC_2394_ 29 28
Coccidioides_immitis_H538.4_ 28 28
Ajellomyces_dermatitidis_ER-3_ 28 27
Histoplasma_capsulatum_H143 26 24
Histoplasma_capsulatum_H88 27 25
Histoplasma_capsulatum_G186AR 29 27
Aspergillus_fumigatus_A1163_ 30 29
Candida_albicans_WO-1_ 17 17
Saccharomyces_cerevisiae_UC5 17 17
Saccharomyces_cerevisiae_PW5 18 18
Saccharomyces_cerevisiae_FL100 11 11
Saccharomyces_cerevisiae_CLIB382 4 4
Saccharomyces_cerevisiae_CLIB324 11 11
Saccharomyces_cerevisiae_CBS7960 16 16
Saccharomyces_cerevisiae_YJM269 17 17
Saccharomyces_cerevisiae_T7 20 20
Saccharomyces_cerevisiae_FostersB 15 15
Saccharomyces_cerevisiae_FostersO 17 17
Saccharomyces_cerevisiae_VL3 19 19
Saccharomyces_cerevisiae_Vin13 17 17
Saccharomyces_cerevisiae_LalvinQA23 18 18
Saccharomyces_cerevisiae_AWRI796 19 19
Saccharomyces_cerevisiae_Sigma1278b 19 19
Saccharomyces_cerevisiae_W303 19 19
Saccharomyces_cerevisiae_JAY291 19 19
Saccharomyces_cerevisiae_AWRI1631 15 15
Saccharomyces_cerevisiae_YPS163 8 8
Saccharomyces_cerevisiae_M22 9 9
Saccharomyces_cerevisiae_T73 7 7
Saccharomyces_cerevisiae_CLIB215 18 18
Saccharomyces_cerevisiae_Y10 10 10
Saccharomyces_cerevisiae_YJM789_ 20 20
Saccharomyces_cerevisiae_YJM789 20 20
Saccharomyces_cerevisiae_RM11-1a 20 20
Saccharomyces_cerevisiae_RM11-1a_ 20 20
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   19 19
Schizosaccharomyces_pombe_972h-_ 19 19
Batrachochytrium_dendrobatidis_JEL423_ 29 29
Batrachochytrium_dendrobatidis_JAM81_ 26 26
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   52 51
Hordeum_vulgare_22   (Domesticated barley)   71 71
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   60 60
Trypanosoma_brucei_Lister_427_v4.1 20 20
Neospora_caninum_Nc-Liverpool_6.2 20 20
Plasmodium_falciparum_HB3_ 16 16
Plasmodium_falciparum_Dd2_ 9 9
Crinalium_epipsammum_PCC_9333 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1 1
Propionibacterium_acidipropionici_ATCC_4875 1 1
Clostridium_saccharoperbutylacetonicum_N1-4(HMT) 1 1
Enterococcus_faecium_Aus0085 1 1
Singulisphaera_acidiphila_DSM_18658 1 1
Desulfocapsa_sulfexigens_DSM_10523 1 1
Myxococcus_stipitatus_DSM_14675 1 1
Ralstonia_solanacearum_CMR15 1 1
Burkholderia_cenocepacia_MC0-3 1 1
Octadecabacter_antarcticus_307 1 1
Rhizobium_etli_CFN_42 1 1
Pseudomonas_stutzeri_DSM_10701 1 1
Methylophaga_sp._JAM7 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   59 57
Pan_troglodytes_69_2.1.4   (Chimpanzee)   56 54
Gorilla_gorilla_69_3.1   (Western gorilla)   55 54
Pongo_abelii_69_2   (Sumatran orangutan)   57 56
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   53 51
Macaca_mulatta_69_1   (Rhesus monkey)   61 60
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   57 56
Otolemur_garnettii_69_3   (Small-eared galago)   63 62
Microcebus_murinus_69_1   (Gray mouse lemur)   48 47
Rattus_norvegicus_69_3.4   (Norway rat)   64 61
Mus_musculus_69_38   (House mouse)   65 62
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   50 46
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   53 52
Cavia_porcellus_69_3   (Domestic guinea pig)   60 58
Oryctolagus_cuniculus_69_2   (Rabbit)   66 65
Ochotona_princeps_69   (American pika)   47 45
Tupaia_belangeri_69   (Northern tree shrew)   50 49
Sus_scrofa_69_10.2   (Pig)   49 48
Bos_taurus_69_3.1   (Cattle)   64 62
Vicugna_pacos_69_1   (Alpaca)   37 37
Tursiops_truncatus_69_1   (Bottlenose dolphin)   50 48
Mustela_putorius_furo_69_1.0   (Domestic ferret)   54 53
Ailuropoda_melanoleuca_69_1   (Giant panda)   49 49
Canis_familiaris_69_3.1   (Dog)   65 64
Felis_catus_69   (Domestic cat)   39 39
Equus_caballus_69_2   (Horse)   50 49
Myotis_lucifugus_69_2.0   (Little brown bat)   61 60
Pteropus_vampyrus_69_1   (Large flying fox)   49 48
Sorex_araneus_69_1   (European shrew)   42 41
Erinaceus_europaeus_69   (Western European hedgehog)   47 44
Procavia_capensis_69_1   (Cape rock hyrax)   48 46
Loxodonta_africana_69_3   (African savanna elephant)   59 59
Echinops_telfairi_69   (Small Madagascar hedgehog)   51 50
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   46 43
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   54 50
Macropus_eugenii_69_1.0   (Tammar wallaby)   46 44
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   52 52
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   53 52
Ornithorhynchus_anatinus_69_5   (Platypus)   48 48
Petromyzon_marinus_69_7.0   (Sea lamprey)   31 30
Meleagris_gallopavo_69_2   (Turkey)   45 45
Gallus_gallus_69_2   (Chicken)   42 42
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   45 45
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   45 45
Anolis_carolinensis_69_2.0   (Green anole)   42 42
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   54 53
Latimeria_chalumnae_69_1   (Coelacanth)   52 51
Gadus_morhua_69_1   (Atlantic cod)   65 62
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   59 57
Takifugu_rubripes_69_4   (Torafugu)   54 52
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   59 57
Oryzias_latipes_69_1   (Japanese medaka)   54 52
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   62 60
Oreochromis_niloticus_69_1.0   (Nile tilapia)   61 59
Danio_rerio_69_9   (Zebrafish)   65 63
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   30 30
Ciona_intestinalis_69   (Vase tunicate)   35 35
Drosophila_melanogaster_69_5   (Fruit fly)   43 42
Caenorhabditis_elegans_69_215   (Roundworm)   35 35
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   19 19
Arabidopsis_thaliana_10   (Thale cress)   57 57

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   265 259
Homo_sapiens__(NCBI_version)   (Human)   101 99
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   67 64
Heliconius_numata__(Incomplete) 25 25
Loa_loa_v3.3_(Request)   (Eye worm)   38 37
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   41 41
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   31 31
Moniliophthora_perniciosa_FA553__(Genome_survey) 15 15
Encephalitozoon_intestinalis__(endoparasite) 9 9
Encephalitozoon_cuniculi_(endoparasite) 8 8
Picea_sitchensis__(Incomplete)   (Sitka spruce)   16 16
Lotus_japonicus__(Early_assembly) 57 57
Malus_x_domestica_(Duplicate)   (Apple)   149 146
Ricinus_communis__(Early_assembly)   (Castor bean)   47 47
Nicotiana_benthamiana_0.4.4_(Early_draft) 130 124
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   68 67
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   69 68
Phoenix_dactylifera__(Early_draft)   (Date palm)   55 55
Guillardia_theta_(nucleomorph) 3 3
NCBI_plasmid_sequences_(Plasmids) 8 8
Protein_Data_Bank_(all_PDB_sequenc) 464 464
Protozoadb_2010_08_(Protozoadb) 718 718
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1163 1163
STRING_v9.0.5_(STRING) 4465 4398
NCBI_2017_08_genome 47881 47090
Uniprot_2018_03_genome 56727 55734
UniProt__viral_sequences_(Viral) 13 12
Core_Eukaryotic_Genes_458_(CEGMA) 30 30
PDB_chains_(SCOP_1.75)_(PDB) 68 68
TargetDB__(Targets) 204 199
NCBI_viral_sequences_(Viral) 28 24

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]