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Domain combinations for Tubby C-terminal domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Tubby C-terminal domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   20 20
Pan_troglodytes_76_2.1.4   (Chimpanzee)   6 6
Gorilla_gorilla_76_3.1   (Western gorilla)   9 9
Pongo_abelii_76_2   (Sumatran orangutan)   6 6
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   5 5
Papio_anubis_76   (Olive baboon)   7 7
Macaca_mulatta_76_1   (Rhesus monkey)   9 9
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   15 15
Otolemur_garnettii_76_3   (Small-eared galago)   8 8
Microcebus_murinus_76_1   (Gray mouse lemur)   5 5
Rattus_norvegicus_76_5.0   (Norway rat)   6 6
Mus_musculus_76_38   (House mouse)   21 21
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   5 4
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   7 7
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   10 9
Cavia_porcellus_76_3   (Domestic guinea pig)   7 7
Oryctolagus_cuniculus_76_2   (Rabbit)   8 8
Ochotona_princeps_76   (American pika)   5 5
Tupaia_belangeri_76   (Northern tree shrew)   4 4
Sus_scrofa_76_10.2   (Pig)   4 4
Bos_taurus_76_3.1   (Cattle)   7 7
Ovis_aries_76_3.1   (Sheep)   8 8
Vicugna_pacos_76_1   (Alpaca)   3 3
Tursiops_truncatus_76_1   (Bottlenose dolphin)   5 5
Mustela_putorius_furo_76_1.0   (Domestic ferret)   7 7
Ailuropoda_melanoleuca_76_1   (Giant panda)   7 7
Canis_familiaris_76_3.1   (Dog)   10 10
Felis_catus_76_6.2   (Domestic cat)   7 7
Equus_caballus_76_2   (Horse)   6 6
Myotis_lucifugus_76_2.0   (Little brown bat)   6 6
Pteropus_vampyrus_76_1   (Large flying fox)   5 5
Sorex_araneus_76_1   (European shrew)   5 4
Erinaceus_europaeus_76   (Western European hedgehog)   6 5
Procavia_capensis_76_1   (Cape rock hyrax)   6 5
Loxodonta_africana_76_3   (African savanna elephant)   11 11
Echinops_telfairi_76   (Small Madagascar hedgehog)   5 5
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   6 6
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   3 3
Macropus_eugenii_76_1.0   (Tammar wallaby)   6 6
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   7 7
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   7 7
Ornithorhynchus_anatinus_76_5   (Platypus)   7 7
Saccoglossus_kowalevskii_v3.0 8 8
Petromyzon_marinus_76_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_76_2   (Turkey)   5 5
Gallus_gallus_76_4   (Chicken)   5 5
Anas_platyrhynchos_76_1.0   (Mallard)   4 4
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   4 4
Ficedula_albicollis_76_1.0   (Collared flycatcher)   5 5
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   9 9
Anolis_carolinensis_76_2.0   (Green anole)   9 9
Xenopus_laevis_   (African clawed frog)   9 9
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   10 9
Latimeria_chalumnae_76_1   (Coelacanth)   11 9
Lepisosteus_oculatus_76   (Spotted gar)   9 9
Gadus_morhua_76_1   (Atlantic cod)   8 8
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   11 10
Takifugu_rubripes_76_4   (Torafugu)   21 19
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   13 12
Oryzias_latipes_76_1   (Japanese medaka)   8 8
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   9 8
Poecilia_formosa_76   (Amazon molly)   11 10
Oreochromis_niloticus_76_1.0   (Nile tilapia)   11 10
Astyanax_mexicanus_76   (Mexican tetra)   14 13
Danio_rerio_76_9   (Zebrafish)   27 25
Oikopleura_dioica 4 4
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   5 5
Ciona_intestinalis_76   (Vase tunicate)   5 5
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   9 9
Adineta_vaga 38 38
Octopus_bimaculoides_280 4 4
Crassostrea_gigas_22   (Pacific oyster)   6 6
Lottia_gigantea_   (Owl limpet)   6 6
Helobdella_robusta_ 3 3
Capitella_sp._I_ 6 6
Danaus_plexippus_OGS1.0   (Monarch butterfly)   4 4
Heliconius_melpomene_   (Postman butterfly)   2 2
Bombyx_mori_   (Domestic silkworm)   2 2
Nasonia_vitripennis_   (Jewel wasp)   2 2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   6 6
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   3 3
Linepithema_humile_v1.1   (Argentine ant)   4 4
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   3 3
Solenopsis_invicta_v.2.2.3   (Red fire ant)   3 3
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   3 3
Atta_cephalotes_v1.1 4 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   3 3
Lucilia_cuprina   (Australian sheep blowfly)   3 3
Drosophila_grimshawi_1.3 4 4
Drosophila_willistoni_1.3 4 4
Drosophila_pseudoobscura_2.13 5 5
Drosophila_persimilis_1.3 5 5
Drosophila_suzukii 5 5
Drosophila_yakuba_1.3 4 4
Drosophila_simulans_1.3 4 4
Drosophila_sechellia_1.3 5 5
Drosophila_melanogaster_76_5   (Fruit fly)   8 8
Drosophila_erecta_1.3 3 3
Drosophila_ananassae_1.3 5 5
Drosophila_virilis_1.2 3 3
Drosophila_mojavensis_1.3 3 3
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   4 4
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   6 6
Anopheles_darlingi_22   (American malaria mosquito)   3 3
Anopheles_gambiae_49_3j   (African malaria mosquito)   8 8
Tribolium_castaneum_3.0   (Red flour beetle)   3 3
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   3 3
Acyrthosiphon_pisum_   (Pea aphid)   2 2
Rhodnius_prolixus_22 2 2
Daphnia_pulex_   (Common water flea)   5 5
Strigamia_maritima_22 3 3
Sarcoptes_scabiei 3 3
Tetranychus_urticae_   (Two-spotted spider mite)   8 8
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   4 4
Pristionchus_pacificus_ 4 4
Meloidogyne_incognita_   (Southern root-knot nematode)   2 2
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 3 3
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   2 2
Caenorhabditis_japonica_ 4 4
Caenorhabditis_brenneri_ 6 6
Caenorhabditis_remanei_ 3 3
Caenorhabditis_elegans_76_235   (Roundworm)   7 7
Caenorhabditis_briggsae_2 3 3
Trichinella_spiralis_22 2 2
Hymenolepis_microstoma_ 2 2
Echinococcus_multilocularis_ 1 1
Echinococcus_granulosus_ 2 2
Taenia_solium_   (Pork tapeworm)   1 1
Schistosoma_mansoni_ 1 1
Mnemiopsis_leidyi   (Sea walnut)   6 6
Acropora_digitifera_v1.0 2 2
Nematostella_vectensis_1.0   (Starlet sea anemone)   4 4
Hydra_vulgaris 1 1
Amphimedon_queenslandica 4 4
Trichoplax_adhaerens_ 6 6
Proterospongia_sp._ATCC_50818_ 1 1
Monosiga_brevicollis_ 1 1
Sphaeroforma_arctica_JP610_ 4 4
Capsaspora_owczarzaki_ATCC_30864_ 1 1
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Mortierella_verticillata_NRRL_6337_ 2 2
Phycomyces_blakesleeanus_ 2 2
Rhizopus_oryzae_RA_99-880_ 2 2
Mucor_circinelloides_ 2 2
Rhizomucor_miehei_CAU432_ 2 2
Sporisorium_reilianum_22 1 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2 2
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 3 3
Rhodotorula_graminis_WP1_v1.0 1 1
Microbotryum_violaceum_22 1 1
Serpula_lacrymans_var._lacrymans_S7.9_ 1 1
Coniophora_puteana 1 1
Amanita_thiersii_Skay4041_v1.0 1 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1 1
Laccaria_bicolor_S238N-H82_ 1 1
Stereum_hirsutum_FP-91666_SS1__v1.0 8 8
Heterobasidion_annosum_ 1 1
Gloeophyllum_trabeumv1.0 2 2
Punctularia_strigosozonata_v1.0 4 4
Sebacina_vermifera_MAFF_305830_v1.0 3 3
Tulasnella_calospora_AL13/4D_v1.0 2 2
Phanerochaete_chrysosporium_RP-78_2.1 1 1
Dichomitus_squalens 1 1
Trametes_versicolor_v1.0 1 1
Tremella_mesenterica_   (Witches' butter)   3 3
Daldinia_eschscholzii_EC12_v1.0 2 2
Apiospora_montagnei_NRRL_25634_v1.0 2 2
Magnaporthe_poae_ATCC_64411_22 2 2
Podospora_anserina_ 1 1
Sporotrichum_thermophile_ATCC_42464_ 2 2
Neurospora_discreta_FGSC_8579_ 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   2 2
Acremonium_alcalophilumv_1.0 1 1
Glomerella_graminicola_22 1 1
Fusarium_graminearum_ 1 1
Nectria_haematococca_mpVI_ 1 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1 1
Fusarium_verticillioides_7600_ 1 1
Didymella_exigua_CBS_183.55_v1.0 1 1
Leptosphaeria_maculans_22 1 1
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 2 2
Mycosphaerella_graminicola_IPO323_ 3 3
Zasmidium_cellare_ATCC_36951_v1.0 1 1
Dothistroma_septosporum 1 1
Septoria_musiva_v1.0 1 1
Mycosphaerella_fijiensis_CIRAD86_ 2 2
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 5 5
Penicillium_chrysogenum_v1.0 5 5
Aspergillus_acidus_v1.0 3 3
Aspergillus_fumigatus_Af293 2 2
Aspergillus_brasiliensis_v1.0 4 4
Aspergillus_nidulans_FGSC_A4_ 1 1
Aspergillus_sydowii_v1.0 2 2
Aspergillus_versicolor_v1.0 2 2
Aspergillus_glaucus 5 5
Aspergillus_carbonarius_ITEM_5010_ 1 1
Neosartorya_fischeri_NRRL_181_ 4 4
Aspergillus_terreus_NIH2624_ 3 3
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 6 6
Aspergillus_oryzae_RIB40_ 3 3
Aspergillus_niger_22 2 2
Aspergillus_niger_ATCC_1015_ 1 1
Aspergillus_flavus_NRRL3357_ 4 4
Aspergillus_clavatus_NRRL_1_ 4 4
Penicillium_marneffei_ATCC_18224_ 1 1
Hansenula_polymorpha_v2.0 1 1
Dekkera_bruxellensis_CBS_2499_v2.0 1 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1 1
Candida_tropicalis_MYA-3404_ 1 1
Candida_parapsilosis_ 1 1
Candida_albicans_SC5314 1 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 1 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1 1
Candida_guilliermondii_ATCC_6260_ 1 1
Wickerhamomyces_anomalus 1 1
Yarrowia_lipolytica_CLIB122 1 1
Saccharomyces_paradoxus_MIT 1 1
Kluyveromyces_lactis 1 1
Schizosaccharomyces_octosporus_yFS286_ 1 1
Schizosaccharomyces_japonicus_yFS275_ 1 1
Schizosaccharomyces_pombe   (Fission yeast)   1 1
Catenaria_anguillulae_PL171_v1.0 8 8
Allomyces_macrogynus_ATCC_38327_ 11 11
Spizellomyces_punctatus_DAOM_BR117_ 4 4
Dictyostelium_discoideum 1 1
Dictyostelium_purpureum_ 3 3
Entamoeba_invadens_1.2 1 1
Selaginella_moellendorffii_ 27 26
Pinus_taeda   (Loblolly pine)   107 97
Picea_abies   (Norway spruce)   47 47
Eucalyptus_grandis_v201   (Rose gum)   29 29
Theobroma_cacao_B97-61/B2_v1   (Cacao)   28 28
Gossypium_raimondii_v221 81 81
Citrus_clementina_v165 45 45
Citrus_sinensis_v154   (Sweet orange)   63 61
Thellungiella_halophila_v173 36 36
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   48 48
Capsella_rubella_v183 30 30
Arabidopsis_lyrata_   (Lyrate rockcress)   33 33
Arabidopsis_thaliana_10   (Thale cress)   45 45
Carica_papaya_   (Papaya)   16 16
Medicago_truncatula_   (Barrel medic)   54 54
Phaseolus_vulgaris_v186   (French bean)   41 41
Glycine_max_v109   (Soybean)   75 75
Cucumis_sativus_v122   (Cucumber)   32 32
Fragaria_vesca_   (Wild strawberry)   25 24
Malus_domestica_v196   (Apple)   43 42
Prunus_persica_v139   (Peach)   30 30
Linum_usitatissimum_v200   (Flax)   49 48
Manihot_esculenta_v147   (Cassava)   46 46
Populus_trichocarpa_v156   (Black cottonwood)   49 49
Vitis_vinifera_   (Wine grape)   27 26
Mimulus_guttatus_v140   (Spotted monkey flower)   27 27
Solanum_lycopersicum_v.2.3   (Tomato)   31 30
Solanum_tuberosum_   (Potato)   53 53
Actinidia_chinensis_Hongyang_ 43 41
Aquilegia_coerulea_v195 27 27
Triticum_urartu_22 42 42
Triticum_aestivum_22   (Bread wheat)   98 98
Aegilops_tauschii_22 43 42
Brachypodium_distachyon_   (Stiff brome)   30 30
Oryza_barthii_22   (African wild rice)   59 51
Oryza_meridionalis_22 48 46
Oryza_glumaepatula_22 51 47
Oryza_glaberrima   (African rice)   31 31
Oryza_punctata_22 51 45
Oryza_nivara_22 60 56
Oryza_brachyantha_22   (Malo sina)   37 36
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   54 54
Oryza_sativa_v193   (Rice)   54 54
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   39 39
Panicum_virgatum_v202   (Switchgrass)   87 87
Setaria_italica_v164   (Foxtail millet)   61 61
Zea_mays_subsp._mays_   (Maize)   66 63
Zea_mays_v181   (Maize)   71 69
Sorghum_bicolor_   (Sorghum)   51 42
Musa_balbisiana   (Balbis banana)   50 47
Musa_acuminata_22   (Wild Malaysian banana)   49 49
Amborella_trichopoda_22 16 16
Physcomitrella_patens 18 18
Coccomyxa_subellipsoidea_sp._C-169_v2 3 3
Asterochloris_sp._Cgr/DA1pho_v1.0 3 3
Chlorella_variabilis_sp._NC64A_ 5 5
Chlorella_vulgaris_ 3 3
Volvox_carteri_f._nagariensis_ 4 4
Volvox_carteri_v199 3 3
Chlamydomonas_reinhardtii_4.0 6 6
Ostreococcus_sp._RCC809_ 1 1
Ostreococcus_lucimarinus_CCE9901_ 1 1
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 3 2
Micromonas_sp._RCC299_ 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Porphyridium_purpureum_02_2012 5 5
Thecamonas_trahens_ATCC_50062_ 2 2
Bigelowiella_natans_CCMP2755_22 2 1
Cyanophora_paradoxa_ 6 6
Leishmania_mexicana_2.4 1 1
Leishmania_major_strain_Friedlin_ 1 1
Leishmania_infantum_JPCM5_2.4 1 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1 1
Ectocarpus_siliculosus 8 8
Aureococcus_anophagefferens_ 3 3
Albugo_laibachii_22 5 5
Pythium_iwayamai_DAOM_BR242034_22 26 26
Pythium_arrhenomanes_ATCC_12531_22 12 12
Pythium_ultimum_v1.7-2 18 18
Pythium_aphanidermatum_DAOM_BR444_22 15 15
Pythium_irregulare_DAOM_BR486_22 22 22
Pythium_vexans_DAOM_BR484_22 11 10
Phytophthora_ramorum_1.1   (Sudden oak death agent)   10 10
Phytophthora_sojae_1.1 9 9
Phytophthora_infestans_T30-4_ 8 8
Phytophthora_capsici_ 11 11
Hyaloperonospora_arabidopsidis_22 5 5
Phaeodactylum_tricornutumCCAP_1055/1 4 4
Fragilariopsis_cylindrus 9 9
Thalassiosira_pseudonana_CCMP1335 3 3
Perkinsus_marinus_ATCC_50983_ 3 3
Paramecium_tetraurelia_ 25 24
Tetrahymena_thermophila_SB210_1_ 3 3
Ichthyophthirius_multifiliis_strain_G5_ 2 2
Neospora_caninum 1 1
Toxoplasma_gondii_VEG 1 1
Toxoplasma_gondii_ME49 1 1
Toxoplasma_gondii_GT1 1 1
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 11 10
Naegleria_gruberi_ 2 2
Trichomonas_vaginalis_ 18 18
Guillardia_theta_CCMP2712_v1.0_ 6 6
Emiliania_huxleyi_CCMP1516_ 11 11
Acaryochloris_marina_MBIC11017 1 1
Synechococcus_sp._PCC_7502 1 1
Microcoleus_sp._PCC_7113 1 1
Anabaena_variabilis_ATCC_29413 1 1
Rubrobacter_xylanophilus_DSM_9941 1 1
Ilumatobacter_coccineus 1 1
Nakamurella_multipartita_DSM_44233 2 2
Modestobacter_marinus 1 1
Blastococcus_saxobsidens_DD2 1 1
Stackebrandtia_nassauensis_DSM_44728 1 1
Frankia_sp._EAN1pec 1 1
Frankia_alni_ACN14a 1 1
Nocardiopsis_dassonvillei_subsp._dassonvillei_DSM_43111 1 1
Thermomonospora_curvata_DSM_43183 1 1
Kitasatospora_setae_KM-6054 2 2
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_sp._PAMC26508 3 3
Streptomyces_flavogriseus_ATCC_33331 3 3
Streptomyces_sp._SirexAA-E 2 2
Streptomyces_griseus_subsp._griseus_NBRC_13350 1 1
Streptomyces_bingchenggensis_BCW-1 1 1
Streptomyces_violaceusniger_Tu_4113 1 1
Streptomyces_avermitilis_MA-4680 2 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2 2
Streptomyces_scabiei_87.22 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 2 2
Saccharopolyspora_erythraea_NRRL_2338 1 1
Amycolatopsis_mediterranei_U32 1 1
Kribbella_flavida_DSM_17836 1 1
Propionibacterium_propionicum_F0230a 1 1
Microlunatus_phosphovorus_NM-1 1 1
Micromonospora_sp._L5 1 1
Micromonospora_aurantiaca_ATCC_27029 1 1
Actinoplanes_sp._N902-109 1 1
Actinoplanes_sp._SE50/110 2 2
Actinoplanes_missouriensis_431 1 1
Gordonia_polyisoprenivorans_VH2 1 1
Corynebacterium_aurimucosum_ATCC_700975 1 1
Corynebacterium_efficiens_YS-314 1 1
Corynebacterium_glutamicum_R 1 1
Xylanimonas_cellulosilytica_DSM_15894 1 1
Arthrobacter_arilaitensis_Re117 1 1
Rothia_dentocariosa_ATCC_17931 1 1
Micrococcus_luteus_NCTC_2665 1 1
Bifidobacterium_adolescentis_ATCC_15703 1 1
Anaerococcus_prevotii_DSM_20548 1 1
Acidaminococcus_intestini_RyC-MR95 1 1
Acidaminococcus_fermentans_DSM_20731 1 1
Erysipelothrix_rhusiopathiae_str._Fujisawa 1 1
Clostridium_clariflavum_DSM_19732 1 1
Eubacterium_siraeum 1 1
Ruminococcus_sp. 1 1
butyrate-producing_bacterium_SS3/4 1 1
Eubacterium_limosum_KIST612 1 1
Clostridium_sticklandii_DSM_519 1 1
Clostridium_saccharolyticum_WM1 1 1
Clostridium_phytofermentans_ISDg 1 1
[Ruminococcus]_obeum 1 1
Coprococcus_sp._ART55/1 1 1
Roseburia_intestinalis 1 1
Clostridium_cellulovorans_743B 1 1
Clostridium_botulinum_A_str._ATCC_3502 1 1
Carnobacterium_sp._17-4 2 2
Carnobacterium_sp._WN1359 2 2
Aerococcus_urinae_ACS-120-V-Col10a 1 1
Tetragenococcus_halophilus_NBRC_12172 2 2
Melissococcus_plutonius_DAT561 1 1
Enterococcus_hirae_ATCC_9790 1 1
Enterococcus_faecium_Aus0004 1 1
Enterococcus_faecalis_62 1 1
Weissella_koreensis_KACC_15510 1 1
Oenococcus_oeni_PSU-1 1 1
Leuconostoc_sp._C2 2 2
Leuconostoc_kimchii_IMSNU_11154 2 2
Leuconostoc_citreum_KM20 1 1
Leuconostoc_mesenteroides_subsp._mesenteroides_ATCC_8293 2 2
Leuconostoc_gasicomitatum_LMG_18811 1 1
Lactobacillus_casei_ATCC_334 1 1
Lactobacillus_rhamnosus_Lc_705 1 1
Lactobacillus_johnsonii_FI9785 1 1
Lactobacillus_salivarius_CECT_5713 1 1
Lactobacillus_ruminis_ATCC_27782 1 1
Lactobacillus_amylovorus_GRL1118 1 1
Lactobacillus_sakei_subsp._sakei_23K 1 1
Lactobacillus_gasseri_ATCC_33323 1 1
Lactobacillus_plantarum_JDM1 1 1
Lactobacillus_helveticus_DPC_4571 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_BAA-365 1 1
Lactobacillus_buchneri_NRRL_B-30929 1 1
Lactobacillus_buchneri 1 1
Lactobacillus_brevis_ATCC_367 1 1
Lactobacillus_acidophilus_30SC 1 1
Pediococcus_claussenii_ATCC_BAA-344 1 1
Pediococcus_pentosaceus_ATCC_25745 1 1
Streptococcus_sp._I-P16 1 1
Streptococcus_sp._I-G2 1 1
Streptococcus_intermedius_JTH08 1 1
Streptococcus_gallolyticus_UCN34 1 1
Streptococcus_pseudopneumoniae_IS7493 1 1
Streptococcus_pasteurianus_ATCC_43144 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_GGS_124 1 1
Streptococcus_infantarius_subsp._infantarius_CJ18 1 1
Streptococcus_macedonicus_ACA-DC_198 1 1
Streptococcus_mitis_B6 1 1
Streptococcus_parasanguinis_ATCC_15912 1 1
Streptococcus_pneumoniae_P1031 1 1
Streptococcus_agalactiae_A909 1 1
Streptococcus_mutans_NN2025 1 1
Streptococcus_suis_P1/7 1 1
Streptococcus_sanguinis_SK36 1 1
Streptococcus_oralis_Uo5 1 1
Streptococcus_gordonii_str._Challis_substr._CH1 1 1
Exiguobacterium_sp._MH3 1 1
Exiguobacterium_sp._AT1b 2 2
Exiguobacterium_sibiricum_255-15 2 2
Paenibacillus_sp._JDR-2 1 1
Solibacillus_silvestris_StLB046 1 1
Bacillus_sp._JS 1 1
Bacillus_sp._1NLA3E 1 1
Bacillus_amyloliquefaciens_FZB42 1 1
Bacillus_atrophaeus_1942 1 1
Bacillus_subtilis_subsp._subtilis_str._168 1 1
Bacillus_clausii_KSM-K16 1 1
Bacillus_cellulosilyticus_DSM_2522 1 1
Bacillus_pumilus_SAFR-032 1 1
Saprospira_grandis_str._Lewin 2 2
Chitinophaga_pinensis_DSM_2588 1 1
Flexibacter_litoralis_DSM_6794 1 1
Solitalea_canadensis_DSM_3403 1 1
Flavobacteriaceae_bacterium_3519-10 1 1
Flavobacterium_psychrophilum_JIP02/86 1 1
Flavobacterium_branchiophilum_FL-15 1 1
Flavobacterium_johnsoniae_UW101 1 1
Planctomyces_limnophilus_DSM_3776 1 1
Pirellula_staleyi_DSM_6068 1 1
Candidatus_Saccharibacteria_bacterium_RAAC3_TM7_1 1 1
Desulfatibacillum_alkenivorans_AK-01 1 1
Desulfobacterium_autotrophicum_HRM2 1 1
Pelobacter_carbinolicus_DSM_2380 1 1
Sorangium_cellulosum_'So_ce_56' 1 1
Stigmatella_aurantiaca_DW4/3-1 1 1
Corallococcus_coralloides_DSM_2259 2 2
Myxococcus_xanthus_DK_1622 2 2
Myxococcus_fulvus_HW-1 2 2
Methylotenera_versatilis_301 1 1
Psychromonas_sp._CNPT3 1 1
Marinomonas_mediterranea_MMB-1 1 1
halophilic_archaeon_DL31 1 1
Methanocella_arvoryzae_MRE50 1 1
Methanocella_paludicola_SANAE 1 1
Methanosarcina_acetivorans_C2A 1 1
Methanosarcina_mazei_Go1 1 1
Methanosarcina_barkeri_str._Fusaro 2 2
Methanoculleus_bourgensis_MS2 2 2
Salinarchaeum_sp._Harcht-Bsk1 1 1
Haloterrigena_turkmenica_DSM_5511 1 1
Natrinema_sp._J7-2 1 1
Halorubrum_lacusprofundi_ATCC_49239 1 1
Haloquadratum_walsbyi_DSM_16790 1 1
Halomicrobium_mukohataei_DSM_12286 1 1
Halorhabdus_utahensis_DSM_12940 1 1
Haloarcula_hispanica_ATCC_33960 1 1
Haloarcula_marismortui_ATCC_43049 1 1
Halalkalicoccus_jeotgali_B3 2 2
Halobacterium_salinarum_R1 1 1
Halobacterium_sp._NRC-1 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   15 13
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   8 8
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   9 9
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   2 2
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   6 6
Cryptococcus_neoformans_var._grubii_H99_ 1 1
Cryptococcus_neoformans_B-3501A_ 2 2
Cryptococcus_neoformans_JEC21_ 1 1
Aspergillus_fumigatus_A1163_ 3 3
Schizosaccharomyces_pombe_972h-_ 1 1
Batrachochytrium_dendrobatidis_JEL423_ 4 4
Batrachochytrium_dendrobatidis_JAM81_ 4 4
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   27 27
Hordeum_vulgare_22   (Domesticated barley)   66 66
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   41 40
Neospora_caninum_Nc-Liverpool_6.2 1 1
Plasmodium_falciparum_Dd2_ 1 1
Frankia_sp._EuI1c 1 1
Nocardiopsis_alba_ATCC_BAA-2165 3 3
Streptomyces_albus_J1074 1 1
Streptomyces_rapamycinicus_NRRL_5491 1 1
Streptomyces_davawensis_JCM_4913 2 2
Streptomyces_fulvissimus_DSM_40593 2 2
Streptomyces_venezuelae_ATCC_10712 1 1
Streptomyces_collinus_Tu_365 2 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 2 2
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 2 2
Saccharothrix_espanaensis_DSM_44229 1 1
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_orientalis_HCCB10007 1 1
Propionibacterium_acidipropionici_ATCC_4875 2 2
Actinoplanes_friuliensis_DSM_7358 2 2
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 1 1
Corynebacterium_glutamicum_MB001 1 1
Corynebacterium_glutamicum_SCgG2 1 1
Corynebacterium_glutamicum_SCgG1 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Corynebacterium_glutamicum_ATCC_13032 1 1
Erysipelothrix_rhusiopathiae_SY1027 1 1
Eubacterium_siraeum_V10Sc8a 1 1
[Clostridium]_stercorarium_Clostridiu_subsp._stercorarium_DSM_8532 1 1
Faecalibacterium_prausnitzii_L2-6 1 1
Ruminococcus_champanellensis_18P13 1 1
Clostridium_acidurici_9a 1 1
Coprococcus_catus_GD/7 1 1
Roseburia_intestinalis_XB6B4 1 1
Clostridium_botulinum_H04402_065 1 1
Clostridium_botulinum_F_str._230613 1 1
Clostridium_botulinum_F_str._Langeland 1 1
Clostridium_botulinum_B1_str._Okra 1 1
Clostridium_botulinum_Ba4_str._657 1 1
Clostridium_botulinum_A2_str._Kyoto 1 1
Clostridium_botulinum_A3_str._Loch_Maree 1 1
Clostridium_botulinum_A_str._Hall 1 1
Clostridium_botulinum_A_str._ATCC_19397 1 1
Carnobacterium_maltaromaticum_LMA28 1 1
Melissococcus_plutonius_ATCC_35311 1 1
Enterococcus_mundtii_QU_25 1 1
Enterococcus_casseliflavus_EC20 2 2
Enterococcus_faecium_Aus0085 1 1
Enterococcus_faecium_NRRL_B-2354 1 1
Enterococcus_faecium_DO 1 1
Enterococcus_faecalis_str._Symbioflor_1 1 1
Enterococcus_faecalis_D32 1 1
Enterococcus_faecalis_OG1RF 1 1
Enterococcus_faecalis_V583 1 1
Leuconostoc_carnosum_JB16 1 1
Leuconostoc_mesenteroides_subsp._mesenteroides_J18 2 2
Leuconostoc_gelidum_JB7 1 1
Lactobacillus_paracasei_subsp._paracasei_8700:2 1 1
Lactobacillus_casei_LOCK919 1 1
Lactobacillus_casei_W56 1 1
Lactobacillus_casei_LC2W 1 1
Lactobacillus_casei_BD-II 1 1
Lactobacillus_casei_BL23 1 1
Lactobacillus_casei_str._Zhang 1 1
Lactobacillus_rhamnosus_LOCK908 1 1
Lactobacillus_rhamnosus_LOCK900 1 1
Lactobacillus_rhamnosus_ATCC_8530 1 1
Lactobacillus_rhamnosus_GG 1 1
Lactobacillus_rhamnosus_GG 1 1
Lactobacillus_johnsonii_N6.2 1 1
Lactobacillus_johnsonii_DPC_6026 1 1
Lactobacillus_johnsonii_NCC_533 1 1
Lactobacillus_salivarius_UCC118 1 1
Lactobacillus_amylovorus_GRL_1112 1 1
Lactobacillus_plantarum_16 1 1
Lactobacillus_plantarum_ZJ316 1 1
Lactobacillus_plantarum_subsp._plantarum_ST-III 1 1
Lactobacillus_plantarum_subsp._plantarum_P-8 1 1
Lactobacillus_plantarum_WCFS1 1 1
Lactobacillus_helveticus_R0052 1 1
Lactobacillus_helveticus_H10 1 1
Lactobacillus_helveticus_CNRZ32 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ND02 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_ATCC_11842 1 1
Lactobacillus_delbrueckii_subsp._bulgaricus_2038 1 1
Lactobacillus_brevis_KB290 1 1
Pediococcus_pentosaceus_SL4 1 1
Streptococcus_constellatus_subsp._pharyngis_C1050 1 1
Streptococcus_constellatus_subsp._pharyngis_C818 1 1
Streptococcus_constellatus_subsp._pharyngis_C232 1 1
Streptococcus_intermedius_B196 1 1
Streptococcus_intermedius_C270 1 1
Streptococcus_anginosus_C238 1 1
Streptococcus_anginosus_C1051 1 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_BAA-2069 1 1
Streptococcus_gallolyticus_subsp._gallolyticus_ATCC_43143 1 1
Streptococcus_lutetiensis_033 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_ATCC_12394 1 1
Streptococcus_dysgalactiae_subsp._equisimilis_RE378 1 1
Streptococcus_oligofermentans_AS_1.3089 1 1
Streptococcus_parasanguinis_FW213 1 1
Streptococcus_pneumoniae_A026 1 1
Streptococcus_pneumoniae_ST556 1 1
Streptococcus_pneumoniae_SPNA45 1 1
Streptococcus_pneumoniae_SPN994039 1 1
Streptococcus_pneumoniae_SPN994038 1 1
Streptococcus_pneumoniae_SPN034183 1 1
Streptococcus_pneumoniae_SPN034156 1 1
Streptococcus_pneumoniae_INV104 1 1
Streptococcus_pneumoniae_INV200 1 1
Streptococcus_pneumoniae_OXC141 1 1
Streptococcus_pneumoniae_gamPNI0373 1 1
Streptococcus_pneumoniae_AP200 1 1
Streptococcus_pneumoniae_ATCC_700669 1 1
Streptococcus_pneumoniae_TCH8431/19A 1 1
Streptococcus_pneumoniae_CGSP14 1 1
Streptococcus_pneumoniae_G54 1 1
Streptococcus_pneumoniae_JJA 1 1
Streptococcus_pneumoniae_70585 1 1
Streptococcus_pneumoniae_Hungary19A-6 1 1
Streptococcus_pneumoniae_Taiwan19F-14 1 1
Streptococcus_pneumoniae_D39 1 1
Streptococcus_pneumoniae_670-6B 1 1
Streptococcus_pneumoniae_R6 1 1
Streptococcus_pneumoniae_TIGR4 1 1
Streptococcus_agalactiae_ILRI112 1 1
Streptococcus_agalactiae_ILRI005 1 1
Streptococcus_agalactiae_09mas018883 1 1
Streptococcus_agalactiae_2-22 1 1
Streptococcus_agalactiae_SA20-06 1 1
Streptococcus_agalactiae_GD201008-001 1 1
Streptococcus_agalactiae_NEM316 1 1
Streptococcus_agalactiae_2603V/R 1 1
Streptococcus_mutans_GS-5 1 1
Streptococcus_mutans_LJ23 1 1
Streptococcus_mutans_UA159 1 1
Streptococcus_suis_T15 1 1
Streptococcus_suis_TL13 1 1
Streptococcus_suis_SC070731 1 1
Streptococcus_suis_S735 1 1
Streptococcus_suis_ST3 1 1
Streptococcus_suis_D9 1 1
Streptococcus_suis_SS12 1 1
Streptococcus_suis_D12 1 1
Streptococcus_suis_ST1 1 1
Streptococcus_suis_A7 1 1
Streptococcus_suis_JS14 1 1
Streptococcus_suis_BM407 1 1
Streptococcus_suis_SC84 1 1
Streptococcus_suis_GZ1 1 1
Streptococcus_suis_98HAH33 2 2
Streptococcus_suis_05ZYH33 1 1
Streptococcus_salivarius_CCHSS3 1 1
Streptococcus_salivarius_JIM8777 1 1
Exiguobacterium_antarcticum_B7 2 2
Amphibacillus_xylanus_NBRC_15112 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_sequencing 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5033 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_AS43.3 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_YAU_B9601-Y2 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5113 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_UCMB5036 1 1
Bacillus_amyloliquefaciens_subsp._plantarum_CAU_B946 1 1
Bacillus_amyloliquefaciens_LFB112 1 1
Bacillus_amyloliquefaciens_CC178 1 1
Bacillus_amyloliquefaciens_Y2 1 1
Bacillus_amyloliquefaciens_IT-45 1 1
Bacillus_amyloliquefaciens_XH7 1 1
Bacillus_amyloliquefaciens_LL3 1 1
Bacillus_amyloliquefaciens_TA208 1 1
Bacillus_amyloliquefaciens_DSM_7 1 1
Bacillus_subtilis_PY79 1 1
Bacillus_subtilis_XF-1 1 1
Bacillus_subtilis_QB928 1 1
Bacillus_subtilis_BSn5 1 1
Bacillus_subtilis_subsp._subtilis_str._BAB-1 1 1
Bacillus_subtilis_subsp._subtilis_str._BSP1 1 1
Bacillus_subtilis_subsp._subtilis_str._RO-NN-1 1 1
Bacillus_subtilis_subsp._subtilis_6051-HGW 1 1
Bacillus_subtilis_subsp._spizizenii_TU-B-10 1 1
Bacillus_subtilis_subsp._spizizenii_str._W23 1 1
Bacillus_subtilis_subsp._natto_BEST195 1 1
Bacillus_megaterium_WSH-002 1 1
Bacillus_megaterium_QM_B1551 1 1
Sorangium_cellulosum_So0157-2 1 1
Myxococcus_stipitatus_DSM_14675 1 1
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 1 1
Methanolobus_psychrophilus_R15 1 1
Methanosarcina_mazei_Tuc01 1 1
Natrinema_pellirubrum_DSM_15624 3 3
Haloquadratum_walsbyi_C23 1 1
Halorhabdus_tiamatea_SARL4B 1 1
Natronomonas_moolapensis_8.8.11 1 1
Haloarcula_hispanica_N601 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   6 6
Pan_troglodytes_69_2.1.4   (Chimpanzee)   6 6
Gorilla_gorilla_69_3.1   (Western gorilla)   6 6
Pongo_abelii_69_2   (Sumatran orangutan)   5 5
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   5 5
Macaca_mulatta_69_1   (Rhesus monkey)   5 5
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   7 7
Otolemur_garnettii_69_3   (Small-eared galago)   8 8
Microcebus_murinus_69_1   (Gray mouse lemur)   5 5
Rattus_norvegicus_69_3.4   (Norway rat)   5 5
Mus_musculus_69_38   (House mouse)   8 8
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   5 4
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   6 6
Cavia_porcellus_69_3   (Domestic guinea pig)   7 7
Oryctolagus_cuniculus_69_2   (Rabbit)   8 8
Ochotona_princeps_69   (American pika)   5 5
Tupaia_belangeri_69   (Northern tree shrew)   4 4
Sus_scrofa_69_10.2   (Pig)   4 4
Bos_taurus_69_3.1   (Cattle)   6 6
Vicugna_pacos_69_1   (Alpaca)   3 3
Tursiops_truncatus_69_1   (Bottlenose dolphin)   5 5
Mustela_putorius_furo_69_1.0   (Domestic ferret)   7 7
Ailuropoda_melanoleuca_69_1   (Giant panda)   7 7
Canis_familiaris_69_3.1   (Dog)   7 7
Felis_catus_69   (Domestic cat)   6 5
Equus_caballus_69_2   (Horse)   6 6
Myotis_lucifugus_69_2.0   (Little brown bat)   6 6
Pteropus_vampyrus_69_1   (Large flying fox)   5 5
Sorex_araneus_69_1   (European shrew)   5 4
Erinaceus_europaeus_69   (Western European hedgehog)   6 5
Procavia_capensis_69_1   (Cape rock hyrax)   6 5
Loxodonta_africana_69_3   (African savanna elephant)   8 8
Echinops_telfairi_69   (Small Madagascar hedgehog)   5 5
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   5 5
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   3 3
Macropus_eugenii_69_1.0   (Tammar wallaby)   6 6
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   6 6
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   7 7
Ornithorhynchus_anatinus_69_5   (Platypus)   6 6
Petromyzon_marinus_69_7.0   (Sea lamprey)   2 2
Meleagris_gallopavo_69_2   (Turkey)   5 5
Gallus_gallus_69_2   (Chicken)   5 5
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   4 4
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   8 8
Anolis_carolinensis_69_2.0   (Green anole)   7 7
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   8 7
Latimeria_chalumnae_69_1   (Coelacanth)   8 7
Gadus_morhua_69_1   (Atlantic cod)   8 8
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   10 9
Takifugu_rubripes_69_4   (Torafugu)   9 8
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   9 8
Oryzias_latipes_69_1   (Japanese medaka)   7 7
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   9 8
Oreochromis_niloticus_69_1.0   (Nile tilapia)   9 8
Danio_rerio_69_9   (Zebrafish)   13 12
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   4 4
Ciona_intestinalis_69   (Vase tunicate)   3 3
Drosophila_melanogaster_69_5   (Fruit fly)   4 4
Caenorhabditis_elegans_69_215   (Roundworm)   5 5
Arabidopsis_thaliana_10   (Thale cress)   32 32

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   18 18
Homo_sapiens__(NCBI_version)   (Human)   9 9
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   6 6
Loa_loa_v3.3_(Request)   (Eye worm)   2 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   2 2
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   2 2
Moniliophthora_perniciosa_FA553__(Genome_survey) 1 1
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   5 5
Lotus_japonicus__(Early_assembly) 24 24
Malus_x_domestica_(Duplicate)   (Apple)   43 42
Ricinus_communis__(Early_assembly)   (Castor bean)   22 22
Nicotiana_benthamiana_0.4.4_(Early_draft) 56 51
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   30 29
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   31 30
Phoenix_dactylifera__(Early_draft)   (Date palm)   17 16
NCBI_plasmid_sequences_(Plasmids) 2 2
Protozoadb_2010_08_(Protozoadb) 49 49
TargetDB__(Targets) 49 49
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 25 25
STRING_v9.0.5_(STRING) 802 794
Uniprot_2018_03_genome 11979 11837
Protein_Data_Bank_(all_PDB_sequenc) 9 9
NCBI_2017_08_genome 26572 26456
PDB_chains_(SCOP_1.75)_(PDB) 3 3

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