SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for Chalcone isomerase superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Chalcone isomerase domain in that genome.

Complete genomes
Genome     Number   Proteins
Capitella_sp._I_ 1 1
Trichinella_spiralis_22 1 1
Proterospongia_sp._ATCC_50818_ 2 2
Monosiga_brevicollis_ 2 2
Sphaeroforma_arctica_JP610_ 1 1
Capsaspora_owczarzaki_ATCC_30864_ 1 1
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Mortierella_verticillata_NRRL_6337_ 1 1
Phycomyces_blakesleeanus_ 1 1
Rhizopus_oryzae_RA_99-880_ 1 1
Mucor_circinelloides_ 1 1
Rhizomucor_miehei_CAU432_ 1 1
Sporisorium_reilianum_22 1 1
Ustilago_maydis_ 1 1
Mixia_osmundae_IAM_14324_v1.0 1 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 2 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1 1
Melampsora_laricis-populina_ 1 1
Rhodotorula_graminis_WP1_v1.0 1 1
Microbotryum_violaceum_22 1 1
Wallemia_sebi_v1.0 1 1
Sphaerobolus_stellatus_v1.0 1 1
Piloderma_croceum_F_1598_v1.0 1 1
Serpula_lacrymans_var._lacrymans_S7.9_ 1 1
Coniophora_puteana 1 1
Hydnomerulius_pinastri_v2.0 1 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1 1
Pisolithus_microcarpus_441_v1.0 2 2
Pisolithus_tinctorius_Marx_270_v1.0 1 1
Scleroderma_citrinum_Foug_A_v1.0 2 2
Coprinopsis_cinerea_okayama7_130_v3 1 1
Pleurotus_ostreatus_   (Oyster mushroom)   1 1
Amanita_thiersii_Skay4041_v1.0 1 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1 1
Galerina_marginata_v1.0 1 1
Hebeloma_cylindrosporum_h7_v2.0 1 1
Laccaria_bicolor_S238N-H82_ 1 1
Agaricus_bisporus_var._bisporus_ 1 1
Schizophyllum_commune_ 1 1
Stereum_hirsutum_FP-91666_SS1__v1.0 1 1
Heterobasidion_annosum_ 1 1
Gloeophyllum_trabeumv1.0 1 1
Punctularia_strigosozonata_v1.0 1 1
Sebacina_vermifera_MAFF_305830_v1.0 1 1
Tulasnella_calospora_AL13/4D_v1.0 1 1
Postia_placenta_ 2 2
Wolfiporia_cocos_MD-104_SS10__v1.0 1 1
Fomitopsis_pinicolav1.0 1 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1 1
Phanerochaete_chrysosporium_RP-78_2.1 1 1
Dichomitus_squalens 1 1
Trametes_versicolor_v1.0 1 1
Tremella_mesenterica_   (Witches' butter)   2 1
Daldinia_eschscholzii_EC12_v1.0 1 1
Apiospora_montagnei_NRRL_25634_v1.0 1 1
Magnaporthe_poae_ATCC_64411_22 1 1
Magnaporthe_grisea_70-15_ 1 1
Podospora_anserina_ 1 1
Sporotrichum_thermophile_ATCC_42464_ 1 1
Thielavia_terrestris_NRRL_8126_ 1 1
Chaetomium_globosum_CBS_148.51_ 1 1
Neurospora_tetrasperma_ 1 1
Neurospora_discreta_FGSC_8579_ 1 1
Neurospora_crassa_OR74A_ 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1 1
Verticillium_dahliae_VdLs.17_ 1 1
Acremonium_alcalophilumv_1.0 1 1
Glomerella_graminicola_22 1 1
Fusarium_graminearum_ 1 1
Nectria_haematococca_mpVI_ 1 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1 1
Fusarium_verticillioides_7600_ 1 1
Trichoderma_asperellum_CBS_433.97_v1.0 1 1
Trichoderma_atroviride_ 1 1
Trichoderma_citrinoviride_v1.0 1 1
Trichoderma_reesei_1.2 1 1
Trichoderma_virens_Gv29-8_ 1 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1 1
Trichoderma_harzianum_CBS_226.95_v1.0 1 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1 1
Botrytis_cinerea_B05.10_ 1 1
Sclerotinia_sclerotiorum_ 1 1
Blumeria_graminis_22 1 1
Didymella_exigua_CBS_183.55_v1.0 1 1
Leptosphaeria_maculans_22 1 1
Setosphaeria_turcica_v1.0 1 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1 1
Cochliobolus_victoriae_FI3_v1.0 1 1
Cochliobolus_carbonum_26-R-13_v1.0 1 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1 1
Alternaria_brassicicola_ 1 1
Cochliobolus_lunatus_m118_v2.0 1 1
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 1 1
Mycosphaerella_graminicola_IPO323_ 1 1
Zasmidium_cellare_ATCC_36951_v1.0 1 1
Dothistroma_septosporum 1 1
Septoria_musiva_v1.0 1 1
Mycosphaerella_fijiensis_CIRAD86_ 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Paracoccidioides_brasiliensis_Pb18_ 1 1
Coccidioides_posadasii_RMSCC_3488_ 1 1
Coccidioides_immitis_RS_ 1 1
Ajellomyces_dermatitidis_SLH14081_ 1 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_equinum_CBS_127.97_ 1 1
Trichophyton_verrucosum_HKI_0517_ 1 1
Arthroderma_benhamiae_CBS_112371_ 1 1
Trichophyton_tonsurans_CBS_112818_ 1 1
Trichophyton_rubrum_CBS_118892_ 1 1
Uncinocarpus_reesii_1704_ 1 1
Aspergillus_zonatus_v1.0 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1 1
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_acidus_v1.0 1 1
Aspergillus_fumigatus_Af293 1 1
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_nidulans_FGSC_A4_ 1 1
Aspergillus_sydowii_v1.0 1 1
Aspergillus_versicolor_v1.0 1 1
Aspergillus_glaucus 1 1
Aspergillus_carbonarius_ITEM_5010_ 1 1
Neosartorya_fischeri_NRRL_181_ 1 1
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 1 1
Aspergillus_oryzae_RIB40_ 1 1
Aspergillus_niger_22 1 1
Aspergillus_niger_ATCC_1015_ 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Aspergillus_clavatus_NRRL_1_ 1 1
Penicillium_marneffei_ATCC_18224_ 2 1
Tuber_melanosporum_Mel28_22 1 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1 1
Hansenula_polymorpha_v2.0 1 1
Dekkera_bruxellensis_CBS_2499_v2.0 1 1
Pichia_membranifaciensv1.0 1 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1 1
Candida_dubliniensis_CD36_ 1 1
Candida_parapsilosis_ 1 1
Candida_albicans_SC5314 1 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 1 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1 1
Pichia_stipitis_CBS_6054_ 1 1
Candida_guilliermondii_ATCC_6260_ 1 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1 1
Debaromyces_hansenii 1 1
Wickerhamomyces_anomalus 1 1
Pichia_pastoris_GS115_ 1 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1 1
Yarrowia_lipolytica_CLIB122 1 1
Candida_lusitaniae_ATCC_42720_ 1 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1 1
Vanderwaltozyma_polyspora_DSM_70294_ 1 1
Candida_glabrata_CBS138 1 1
Kluyveromyces_thermotolerans_CBS_6340 1 1
Lachancea_kluyveri_ 1 1
Kluyveromyces_waltii 1 1
Ashbya_gossypii_ATCC_10895_ 1 1
Zygosaccharomyces_rouxii_ 1 1
Saccharomyces_mikatae_MIT 1 1
Saccharomyces_paradoxus_MIT 2 2
Saccharomyces_cerevisiae_76   (Baker's yeast)   2 2
Saccharomyces_bayanus_MIT 2 2
Kluyveromyces_lactis 1 1
Schizosaccharomyces_cryophilus_OY26_22 1 1
Schizosaccharomyces_octosporus_yFS286_ 1 1
Schizosaccharomyces_pombe   (Fission yeast)   1 1
Catenaria_anguillulae_PL171_v1.0 1 1
Allomyces_macrogynus_ATCC_38327_ 1 1
Spizellomyces_punctatus_DAOM_BR117_ 1 1
Dictyostelium_discoideum 1 1
Dictyostelium_purpureum_ 1 1
Selaginella_moellendorffii_ 9 9
Pinus_taeda   (Loblolly pine)   20 18
Picea_abies   (Norway spruce)   7 6
Eucalyptus_grandis_v201   (Rose gum)   16 16
Theobroma_cacao_B97-61/B2_v1   (Cacao)   9 9
Gossypium_raimondii_v221 22 21
Citrus_clementina_v165 8 8
Citrus_sinensis_v154   (Sweet orange)   9 9
Thellungiella_halophila_v173 8 8
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   11 10
Capsella_rubella_v183 6 6
Arabidopsis_lyrata_   (Lyrate rockcress)   7 7
Arabidopsis_thaliana_10   (Thale cress)   10 10
Carica_papaya_   (Papaya)   6 6
Medicago_truncatula_   (Barrel medic)   16 16
Phaseolus_vulgaris_v186   (French bean)   8 8
Glycine_max_v109   (Soybean)   17 16
Cucumis_sativus_v122   (Cucumber)   7 7
Fragaria_vesca_   (Wild strawberry)   5 5
Malus_domestica_v196   (Apple)   40 29
Prunus_persica_v139   (Peach)   6 6
Linum_usitatissimum_v200   (Flax)   12 12
Manihot_esculenta_v147   (Cassava)   7 6
Populus_trichocarpa_v156   (Black cottonwood)   8 8
Vitis_vinifera_   (Wine grape)   6 6
Mimulus_guttatus_v140   (Spotted monkey flower)   6 6
Solanum_lycopersicum_v.2.3   (Tomato)   7 7
Solanum_tuberosum_   (Potato)   7 7
Actinidia_chinensis_Hongyang_ 8 8
Aquilegia_coerulea_v195 12 12
Triticum_urartu_22 5 5
Triticum_aestivum_22   (Bread wheat)   19 19
Aegilops_tauschii_22 5 5
Brachypodium_distachyon_   (Stiff brome)   9 9
Oryza_barthii_22   (African wild rice)   12 12
Oryza_meridionalis_22 8 8
Oryza_glumaepatula_22 8 8
Oryza_glaberrima   (African rice)   5 5
Oryza_punctata_22 8 8
Oryza_nivara_22 13 13
Oryza_brachyantha_22   (Malo sina)   7 7
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   12 12
Oryza_sativa_v193   (Rice)   11 11
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   8 6
Panicum_virgatum_v202   (Switchgrass)   19 18
Setaria_italica_v164   (Foxtail millet)   10 10
Zea_mays_subsp._mays_   (Maize)   11 11
Zea_mays_v181   (Maize)   16 16
Sorghum_bicolor_   (Sorghum)   5 5
Musa_balbisiana   (Balbis banana)   8 7
Musa_acuminata_22   (Wild Malaysian banana)   8 8
Amborella_trichopoda_22 8 8
Physcomitrella_patens 6 6
Coccomyxa_subellipsoidea_sp._C-169_v2 4 4
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Chlorella_variabilis_sp._NC64A_ 4 4
Chlorella_vulgaris_ 3 3
Volvox_carteri_f._nagariensis_ 3 3
Volvox_carteri_v199 4 4
Chlamydomonas_reinhardtii_4.0 3 3
Ostreococcus_sp._RCC809_ 2 2
Ostreococcus_lucimarinus_CCE9901_ 2 2
Ostreococcus_tauri_ 2 2
Bathycoccus_prasinos_ 2 2
Micromonas_sp._RCC299_ 2 2
Micromonas_pusilla_CCMP1545_v3.0 2 2
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Porphyridium_purpureum_02_2012 1 1
Bigelowiella_natans_CCMP2755_22 4 4
Cyanophora_paradoxa_ 1 1
Ectocarpus_siliculosus 2 2
Pythium_iwayamai_DAOM_BR242034_22 1 1
Pythium_arrhenomanes_ATCC_12531_22 2 1
Pythium_ultimum_v1.7-2 2 1
Pythium_aphanidermatum_DAOM_BR444_22 2 1
Pythium_irregulare_DAOM_BR486_22 1 1
Pythium_vexans_DAOM_BR484_22 1 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1 1
Phytophthora_sojae_1.1 1 1
Phytophthora_infestans_T30-4_ 1 1
Phytophthora_capsici_ 1 1
Hyaloperonospora_arabidopsidis_22 1 1
Phaeodactylum_tricornutumCCAP_1055/1 2 2
Fragilariopsis_cylindrus 5 5
Thalassiosira_pseudonana_CCMP1335 4 4
Symbiodinium_minutum_clade_B1_v1.2 1 1
Guillardia_theta_CCMP2712_v1.0_ 4 4
Emiliania_huxleyi_CCMP1516_ 3 3
Zunongwangia_profunda_SM-A87 1 1
Krokinobacter_sp._4H-3-7-5 1 1
Gramella_forsetii_KT0803 1 1
Croceibacter_atlanticus_HTCC2559 1 1
Flavobacterium_indicum_GPTSA100-9 1 1
Flavobacterium_psychrophilum_JIP02/86 2 2
Flavobacterium_columnare_ATCC_49512 1 1
Flavobacterium_johnsoniae_UW101 1 1
Waddlia_chondrophila_WSU_86-1044 1 1
Parachlamydia_acanthamoebae_UV-7 1 1
Pirellula_staleyi_DSM_6068 1 1
Coraliomargarita_akajimensis_DSM_45221 1 1
Desulfurispirillum_indicum_S5 1 1
Calditerrivibrio_nitroreducens_DSM_19672 1 1
Deferribacter_desulfuricans_SSM1 1 1
Flexistipes_sinusarabici_DSM_4947 1 1
Candidatus_Nitrospira_defluvii 1 1
Bacteriovorax_marinus_SJ 1 1
Bdellovibrio_bacteriovorus_HD100 1 1
Desulfatibacillum_alkenivorans_AK-01 2 2
Desulfobacterium_autotrophicum_HRM2 1 1
Desulfococcus_oleovorans_Hxd3 2 2
Desulfomicrobium_baculatum_DSM_4028 1 1
Geobacter_uraniireducens_Rf4 1 1
Geobacter_sulfurreducens_KN400 1 1
Pelobacter_propionicus_DSM_2379 1 1
Haliangium_ochraceum_DSM_14365 1 1
Sorangium_cellulosum_'So_ce_56' 1 1
Anaeromyxobacter_sp._Fw109-5 1 1
Anaeromyxobacter_dehalogenans_2CP-1 2 2
Stigmatella_aurantiaca_DW4/3-1 2 2
Corallococcus_coralloides_DSM_2259 2 2
Myxococcus_xanthus_DK_1622 2 2
Myxococcus_fulvus_HW-1 2 2
Dechloromonas_aromatica_RCB 1 1
Thauera_sp._MZ1T 1 1
Azoarcus_sp._KH32C 1 1
Dechlorosoma_suillum_PS 1 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 1 1
Thiomonas_arsenitoxydans 1 1
Thiomonas_intermedia_K12 1 1
Rubrivivax_gelatinosus_IL144 2 2
Ralstonia_eutropha_JMP134 1 1
Cupriavidus_taiwanensis_LMG_19424 1 1
Cupriavidus_metallidurans_CH34 1 1
Cupriavidus_necator_N-1 1 1
Ralstonia_eutropha_H16 1 1
Ralstonia_pickettii_12D 1 1
Ralstonia_solanacearum_CFBP2957 1 1
Ramlibacter_tataouinensis_TTB310 1 1
Delftia_sp._Cs1-4 1 1
Delftia_acidovorans_SPH-1 1 1
Polaromonas_sp._JS666 1 1
Polaromonas_naphthalenivorans_CJ2 1 1
Variovorax_paradoxus_S110 1 1
Rhodoferax_ferrireducens_T118 2 2
Acidovorax_ebreus_TPSY 1 1
Acidovorax_sp._KKS102 1 1
Acidovorax_sp._JS42 1 1
Acidovorax_citrulli_AAC00-1 1 1
Acidovorax_avenae_subsp._avenae_ATCC_19860 1 1
Comamonas_testosteroni_CNB-2 1 1
Herminiimonas_arsenicoxydans 1 1
Collimonas_fungivorans_Ter331 1 1
Janthinobacterium_sp._Marseille 1 1
Advenella_kashmirensis_WT001 1 1
Bordetella_avium_197N 1 1
Achromobacter_xylosoxidans_A8 1 1
Achromobacter_xylosoxidans 1 1
Sideroxydans_lithotrophicus_ES-1 1 1
Gallionella_capsiferriformans_ES-2 1 1
Methylotenera_versatilis_301 1 1
alpha_proteobacterium_HIMB59 1 1
Saccharophagus_degradans_2-40 2 2
Cellvibrio_japonicus_Ueda107 1 1
Vibrio_fischeri_MJ11 1 1
Vibrio_harveyi_ATCC_BAA-1116 1 1
Psychromonas_ingrahamii_37 1 1
Idiomarina_loihiensis_L2TR 1 1
Ferrimonas_balearica_DSM_9799 1 1
Shewanella_piezotolerans_WP3 1 1
Shewanella_loihica_PV-4 1 1
Shewanella_halifaxensis_HAW-EB4 1 1
Shewanella_sediminis_HAW-EB3 2 2
Shewanella_denitrificans_OS217 1 1
Shewanella_pealeana_ATCC_700345 1 1
Shewanella_oneidensis_MR-1 1 1
Shewanella_baltica_OS185 1 1
Shewanella_woodyi_ATCC_51908 2 2
Shewanella_sp._MR-4 1 1
Shewanella_amazonensis_SB2B 1 1
Shewanella_violacea_DSS12 1 1
Shewanella_frigidimarina_NCIMB_400 1 1
Shewanella_putrefaciens_CN-32 1 1
Marinobacter_adhaerens_HP15 1 1
Marinobacter_hydrocarbonoclasticus_ATCC_49840 1 1
Marinobacter_aquaeolei_VT8 1 1
Kangiella_koreensis_DSM_16069 1 1
Hahella_chejuensis_KCTC_2396 2 2
Alcanivorax_borkumensis_SK2 1 1
Halothiobacillus_neapolitanus_c2 1 1
Spiribacter_sp._UAH-SP71 1 1
Thioalkalivibrio_sulfidophilus_HL-EbGr7 1 1
gamma_proteobacterium_HdN1 2 2
Thioalkalimicrobium_cyclicum_ALM1 1 1
Francisella_philomiragia_subsp._philomiragia_ATCC_25017 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Cryptococcus_neoformans_var._grubii_H99_ 1 1
Cryptococcus_neoformans_B-3501A_ 1 1
Cryptococcus_neoformans_JEC21_ 1 1
Paracoccidioides_brasiliensis_Pb01_ 1 1
Paracoccidioides_brasiliensis_Pb03_ 1 1
Coccidioides_posadasii_str._Silveira_ 1 1
Coccidioides_immitis_RMSCC_3703_ 1 1
Coccidioides_immitis_RMSCC_2394_ 1 1
Ajellomyces_dermatitidis_ER-3_ 1 1
Histoplasma_capsulatum_H143 1 1
Histoplasma_capsulatum_H88 1 1
Histoplasma_capsulatum_G186AR 1 1
Aspergillus_fumigatus_A1163_ 1 1
Candida_albicans_WO-1_ 1 1
Saccharomyces_cerevisiae_UC5 2 2
Saccharomyces_cerevisiae_PW5 2 2
Saccharomyces_cerevisiae_FL100 2 2
Saccharomyces_cerevisiae_CLIB324 1 1
Saccharomyces_cerevisiae_CBS7960 2 2
Saccharomyces_cerevisiae_YJM269 2 2
Saccharomyces_cerevisiae_T7 2 2
Saccharomyces_cerevisiae_FostersB 2 2
Saccharomyces_cerevisiae_FostersO 2 2
Saccharomyces_cerevisiae_VL3 1 1
Saccharomyces_cerevisiae_Vin13 2 2
Saccharomyces_cerevisiae_LalvinQA23 2 2
Saccharomyces_cerevisiae_AWRI796 2 2
Saccharomyces_cerevisiae_Sigma1278b 2 2
Saccharomyces_cerevisiae_W303 2 2
Saccharomyces_cerevisiae_JAY291 2 2
Saccharomyces_cerevisiae_AWRI1631 2 2
Saccharomyces_cerevisiae_YPS163 2 2
Saccharomyces_cerevisiae_T73 2 2
Saccharomyces_cerevisiae_CLIB215 1 1
Saccharomyces_cerevisiae_Y10 2 2
Saccharomyces_cerevisiae_YJM789_ 2 2
Saccharomyces_cerevisiae_YJM789 2 2
Saccharomyces_cerevisiae_RM11-1a 2 2
Saccharomyces_cerevisiae_RM11-1a_ 2 2
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   2 2
Schizosaccharomyces_pombe_972h-_ 1 1
Batrachochytrium_dendrobatidis_JEL423_ 1 1
Batrachochytrium_dendrobatidis_JAM81_ 1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   8 8
Hordeum_vulgare_22   (Domesticated barley)   17 17
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   8 8
Nonlabens_dokdonensis_DSW-6 1 1
Psychroflexus_torquis_ATCC_700755 1 1
Singulisphaera_acidiphila_DSM_18658 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 1 1
Desulfocapsa_sulfexigens_DSM_10523 1 1
Desulfovibrio_desulfuricans_ND132 1 1
Geobacter_sulfurreducens_PCA 1 1
Sorangium_cellulosum_So0157-2 1 1
Anaeromyxobacter_sp._K 2 2
Anaeromyxobacter_dehalogenans_2CP-C 2 2
Myxococcus_stipitatus_DSM_14675 2 2
Ralstonia_pickettii_12J 1 1
Ralstonia_solanacearum_FQY_4 1 1
Ralstonia_solanacearum_Po82 1 1
Ralstonia_solanacearum_PSI07 1 1
Ralstonia_solanacearum_CMR15 1 1
Ralstonia_solanacearum_GMI1000 1 1
Variovorax_paradoxus_B4 1 1
Variovorax_paradoxus_EPS 1 1
Achromobacter_xylosoxidans_NBRC_15126_=_ATCC_27061 1 1
Vibrio_fischeri_ES114 1 1
Idiomarina_loihiensis_GSL_199 1 1
Shewanella_sp._W3-18-1 1 1
Shewanella_sp._ANA-3 1 1
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS678 1 1
Shewanella_baltica_OS117 1 1
Shewanella_baltica_OS223 1 1
Shewanella_baltica_OS195 1 1
Shewanella_baltica_OS155 1 1
Shewanella_sp._MR-7 1 1
Shewanella_putrefaciens_200 1 1
Alteromonas_macleodii_str._'Black_Sea_11' 1 1
Thalassolituus_oleivorans_MIL-1 1 1
Spiribacter_salinus_M19-40 1 1
Pseudomonas_poae_RE*1-1-14 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   2 2
Arabidopsis_thaliana_10   (Thale cress)   7 7

Others
Genome     Number   Proteins
Moniliophthora_perniciosa_FA553__(Genome_survey) 1 1
Picea_sitchensis__(Incomplete)   (Sitka spruce)   2 2
Lotus_japonicus__(Early_assembly) 6 6
Malus_x_domestica_(Duplicate)   (Apple)   40 29
Ricinus_communis__(Early_assembly)   (Castor bean)   6 6
Nicotiana_benthamiana_0.4.4_(Early_draft) 13 12
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   7 7
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   7 7
Phoenix_dactylifera__(Early_draft)   (Date palm)   6 4
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 1 1
TargetDB__(Targets) 4 4
PDB_chains_(SCOP_1.75)_(PDB) 3 3
Protein_Data_Bank_(all_PDB_sequenc) 48 48
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 90 90
STRING_v9.0.5_(STRING) 196 196
NCBI_2017_08_genome 3147 3125
Uniprot_2018_03_genome 4045 4016

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]