SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for RNA-binding domain, RBD superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a RNA-binding domain, RBD domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   1695 1248
Pan_troglodytes_76_2.1.4   (Chimpanzee)   362 250
Gorilla_gorilla_76_3.1   (Western gorilla)   540 371
Pongo_abelii_76_2   (Sumatran orangutan)   377 263
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   360 250
Papio_anubis_76   (Olive baboon)   423 285
Macaca_mulatta_76_1   (Rhesus monkey)   750 500
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1066 711
Otolemur_garnettii_76_3   (Small-eared galago)   416 289
Microcebus_murinus_76_1   (Gray mouse lemur)   258 187
Rattus_norvegicus_76_5.0   (Norway rat)   529 343
Mus_musculus_76_38   (House mouse)   1146 792
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   277 191
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   370 259
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   467 331
Cavia_porcellus_76_3   (Domestic guinea pig)   358 245
Oryctolagus_cuniculus_76_2   (Rabbit)   411 284
Ochotona_princeps_76   (American pika)   252 181
Tupaia_belangeri_76   (Northern tree shrew)   247 178
Sus_scrofa_76_10.2   (Pig)   401 290
Bos_taurus_76_3.1   (Cattle)   420 284
Ovis_aries_76_3.1   (Sheep)   473 316
Vicugna_pacos_76_1   (Alpaca)   216 153
Tursiops_truncatus_76_1   (Bottlenose dolphin)   314 218
Mustela_putorius_furo_76_1.0   (Domestic ferret)   387 264
Ailuropoda_melanoleuca_76_1   (Giant panda)   374 259
Canis_familiaris_76_3.1   (Dog)   484 337
Felis_catus_76_6.2   (Domestic cat)   378 257
Equus_caballus_76_2   (Horse)   359 246
Myotis_lucifugus_76_2.0   (Little brown bat)   447 315
Pteropus_vampyrus_76_1   (Large flying fox)   306 209
Sorex_araneus_76_1   (European shrew)   226 160
Erinaceus_europaeus_76   (Western European hedgehog)   235 170
Procavia_capensis_76_1   (Cape rock hyrax)   270 191
Loxodonta_africana_76_3   (African savanna elephant)   527 365
Echinops_telfairi_76   (Small Madagascar hedgehog)   304 214
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   539 377
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   230 161
Macropus_eugenii_76_1.0   (Tammar wallaby)   263 182
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   418 287
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   374 261
Ornithorhynchus_anatinus_76_5   (Platypus)   297 220
Saccoglossus_kowalevskii_v3.0 766 520
Petromyzon_marinus_76_7.0   (Sea lamprey)   160 123
Meleagris_gallopavo_76_2   (Turkey)   332 222
Gallus_gallus_76_4   (Chicken)   306 210
Anas_platyrhynchos_76_1.0   (Mallard)   273 191
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   301 209
Ficedula_albicollis_76_1.0   (Collared flycatcher)   289 199
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   344 234
Anolis_carolinensis_76_2.0   (Green anole)   308 215
Xenopus_laevis_   (African clawed frog)   968 631
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   446 291
Latimeria_chalumnae_76_1   (Coelacanth)   448 295
Lepisosteus_oculatus_76   (Spotted gar)   437 289
Gadus_morhua_76_1   (Atlantic cod)   376 264
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   387 268
Takifugu_rubripes_76_4   (Torafugu)   915 622
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   535 359
Oryzias_latipes_76_1   (Japanese medaka)   500 338
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   383 259
Poecilia_formosa_76   (Amazon molly)   395 264
Oreochromis_niloticus_76_1.0   (Nile tilapia)   525 349
Astyanax_mexicanus_76   (Mexican tetra)   426 281
Danio_rerio_76_9   (Zebrafish)   846 591
Oikopleura_dioica 235 182
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   329 209
Ciona_intestinalis_76   (Vase tunicate)   197 138
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   242 183
Adineta_vaga 651 491
Octopus_bimaculoides_280 348 249
Crassostrea_gigas_22   (Pacific oyster)   195 143
Lottia_gigantea_   (Owl limpet)   205 159
Helobdella_robusta_ 313 230
Capitella_sp._I_ 234 176
Danaus_plexippus_OGS1.0   (Monarch butterfly)   193 143
Heliconius_melpomene_   (Postman butterfly)   174 131
Bombyx_mori_   (Domestic silkworm)   157 125
Nasonia_vitripennis_   (Jewel wasp)   171 127
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   365 277
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   177 137
Linepithema_humile_v1.1   (Argentine ant)   188 145
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   192 148
Solenopsis_invicta_v.2.2.3   (Red fire ant)   156 119
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   190 146
Atta_cephalotes_v1.1 195 157
Camponotus_floridanus_v3.3   (Florida carpenter ant)   181 140
Lucilia_cuprina   (Australian sheep blowfly)   178 129
Drosophila_grimshawi_1.3 196 142
Drosophila_willistoni_1.3 207 153
Drosophila_pseudoobscura_2.13 202 149
Drosophila_persimilis_1.3 172 131
Drosophila_suzukii 227 162
Drosophila_yakuba_1.3 201 145
Drosophila_simulans_1.3 188 139
Drosophila_sechellia_1.3 206 152
Drosophila_melanogaster_76_5   (Fruit fly)   792 523
Drosophila_erecta_1.3 203 148
Drosophila_ananassae_1.3 196 143
Drosophila_virilis_1.2 199 147
Drosophila_mojavensis_1.3 198 145
Megaselia_scalaris_22 74 63
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   270 189
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   261 190
Anopheles_darlingi_22   (American malaria mosquito)   160 116
Anopheles_gambiae_49_3j   (African malaria mosquito)   213 154
Tribolium_castaneum_3.0   (Red flour beetle)   185 135
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   178 129
Acyrthosiphon_pisum_   (Pea aphid)   229 156
Rhodnius_prolixus_22 161 124
Daphnia_pulex_   (Common water flea)   241 188
Strigamia_maritima_22 242 186
Sarcoptes_scabiei 139 100
Tetranychus_urticae_   (Two-spotted spider mite)   135 107
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   158 122
Pristionchus_pacificus_ 180 153
Meloidogyne_incognita_   (Southern root-knot nematode)   257 208
Meloidogyne_hapla_ 138 112
Onchocerca_volvulus_22 173 126
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   275 201
Caenorhabditis_japonica_ 150 113
Caenorhabditis_brenneri_ 233 174
Caenorhabditis_remanei_ 237 182
Caenorhabditis_elegans_76_235   (Roundworm)   467 319
Caenorhabditis_briggsae_2 175 132
Trichinella_spiralis_22 164 133
Hymenolepis_microstoma_ 195 132
Echinococcus_multilocularis_ 221 152
Echinococcus_granulosus_ 213 147
Taenia_solium_   (Pork tapeworm)   212 152
Schistosoma_mansoni_ 276 192
Mnemiopsis_leidyi   (Sea walnut)   227 162
Thelohanellus_kitauei 96 75
Acropora_digitifera_v1.0 206 161
Nematostella_vectensis_1.0   (Starlet sea anemone)   238 182
Hydra_vulgaris 215 158
Amphimedon_queenslandica 227 166
Trichoplax_adhaerens_ 146 111
Proterospongia_sp._ATCC_50818_ 124 87
Monosiga_brevicollis_ 120 83
Sphaeroforma_arctica_JP610_ 118 98
Capsaspora_owczarzaki_ATCC_30864_ 110 83
Conidiobolus_coronatus_NRRL28638_v1.0 98 74
Mortierella_verticillata_NRRL_6337_ 149 116
Phycomyces_blakesleeanus_ 163 125
Rhizopus_oryzae_RA_99-880_ 168 130
Mucor_circinelloides_ 161 118
Rhizomucor_miehei_CAU432_ 161 119
Malassezia_globosa_CBS_7966_ 154 118
Sporisorium_reilianum_22 102 76
Ustilago_maydis_ 94 70
Mixia_osmundae_IAM_14324_v1.0 94 74
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 114 85
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 146 114
Melampsora_laricis-populina_ 117 90
Rhodotorula_graminis_WP1_v1.0 97 70
Sporobolomyces_roseus_IAM_13481_ 87 62
Microbotryum_violaceum_22 104 76
Wallemia_sebi_v1.0 92 71
Sphaerobolus_stellatus_v1.0 120 98
Piloderma_croceum_F_1598_v1.0 120 93
Serpula_lacrymans_var._lacrymans_S7.9_ 82 63
Coniophora_puteana 111 85
Hydnomerulius_pinastri_v2.0 110 86
Paxillus_rubicundulus_Ve08.2h10_v1.0 113 86
Pisolithus_microcarpus_441_v1.0 123 94
Pisolithus_tinctorius_Marx_270_v1.0 118 91
Scleroderma_citrinum_Foug_A_v1.0 134 100
Coprinopsis_cinerea_okayama7_130_v3 116 85
Pleurotus_ostreatus_   (Oyster mushroom)   114 88
Amanita_thiersii_Skay4041_v1.0 123 93
Amanita_muscaria_Koide_v1.0   (Fly agaric)   119 92
Galerina_marginata_v1.0 116 90
Hebeloma_cylindrosporum_h7_v2.0 114 87
Laccaria_bicolor_S238N-H82_ 116 90
Agaricus_bisporus_var._bisporus_ 110 81
Schizophyllum_commune_ 115 84
Stereum_hirsutum_FP-91666_SS1__v1.0 117 89
Heterobasidion_annosum_ 106 79
Gloeophyllum_trabeumv1.0 116 88
Punctularia_strigosozonata_v1.0 110 84
Sebacina_vermifera_MAFF_305830_v1.0 141 109
Fomitiporia_mediterranea_v1.0 105 78
Tulasnella_calospora_AL13/4D_v1.0 110 87
Postia_placenta_ 156 113
Wolfiporia_cocos_MD-104_SS10__v1.0 110 83
Fomitopsis_pinicolav1.0 114 85
Fomitopsis_pinicola_FP-58527_SS1_v3.0 117 86
Phanerochaete_chrysosporium_RP-78_2.1 102 76
Dichomitus_squalens 107 81
Trametes_versicolor_v1.0 114 86
Tremella_mesenterica_   (Witches' butter)   95 73
Daldinia_eschscholzii_EC12_v1.0 107 79
Apiospora_montagnei_NRRL_25634_v1.0 116 86
Magnaporthe_poae_ATCC_64411_22 92 63
Magnaporthe_grisea_70-15_ 102 75
Podospora_anserina_ 105 78
Sporotrichum_thermophile_ATCC_42464_ 102 70
Thielavia_terrestris_NRRL_8126_ 101 74
Chaetomium_globosum_CBS_148.51_ 98 72
Neurospora_tetrasperma_ 109 79
Neurospora_discreta_FGSC_8579_ 107 77
Neurospora_crassa_OR74A_ 116 83
Cryphonectria_parasitica_   (Chestnut blight fungus)   99 73
Verticillium_albo-atrum_VaMs.102_ 84 66
Verticillium_dahliae_VdLs.17_ 97 71
Acremonium_alcalophilumv_1.0 99 73
Glomerella_graminicola_22 102 74
Fusarium_graminearum_ 96 75
Nectria_haematococca_mpVI_ 97 71
Fusarium_oxysporum_f._sp._lycopersici_4286_ 94 71
Fusarium_verticillioides_7600_ 98 71
Trichoderma_asperellum_CBS_433.97_v1.0 101 76
Trichoderma_atroviride_ 97 71
Trichoderma_citrinoviride_v1.0 94 70
Trichoderma_reesei_1.2 97 71
Trichoderma_virens_Gv29-8_ 99 74
Trichoderma_longibrachiatum_ATCC_18648_v1.0 93 68
Trichoderma_harzianum_CBS_226.95_v1.0 99 75
Amorphotheca_resinae_v1.0   (Creosote fungus)   110 79
Botrytis_cinerea_B05.10_ 103 77
Sclerotinia_sclerotiorum_ 101 74
Blumeria_graminis_22 91 65
Didymella_exigua_CBS_183.55_v1.0 100 74
Leptosphaeria_maculans_22 96 70
Setosphaeria_turcica_v1.0 103 75
Cochliobolus_miyabeanus_ATCC_44560_v1.0 97 72
Cochliobolus_victoriae_FI3_v1.0 100 73
Cochliobolus_carbonum_26-R-13_v1.0 100 73
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   90 64
Alternaria_brassicicola_ 89 66
Cochliobolus_lunatus_m118_v2.0 102 75
Pyrenophora_teres_f._teres_22 104 77
Pyrenophora_tritici-repentis_ 99 74
Stagonospora_nodorum_ 100 75
Mycosphaerella_graminicola_IPO323_ 95 73
Zasmidium_cellare_ATCC_36951_v1.0 102 78
Dothistroma_septosporum 108 83
Septoria_musiva_v1.0 100 73
Mycosphaerella_fijiensis_CIRAD86_ 93 71
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 103 77
Paracoccidioides_brasiliensis_Pb18_ 94 71
Coccidioides_posadasii_RMSCC_3488_ 100 73
Coccidioides_immitis_RS_ 105 76
Ajellomyces_dermatitidis_SLH14081_ 102 77
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 93 70
Microsporum_canis_CBS_113480_ 98 73
Trichophyton_equinum_CBS_127.97_ 97 72
Trichophyton_verrucosum_HKI_0517_ 93 68
Arthroderma_benhamiae_CBS_112371_ 98 70
Trichophyton_tonsurans_CBS_112818_ 98 71
Trichophyton_rubrum_CBS_118892_ 104 78
Uncinocarpus_reesii_1704_ 92 66
Aspergillus_zonatus_v1.0 102 76
Penicillium_chrysogenum_Wisconsin_54-1255_ 105 77
Penicillium_chrysogenum_v1.0 103 75
Aspergillus_acidus_v1.0 101 77
Aspergillus_fumigatus_Af293 105 77
Aspergillus_brasiliensis_v1.0 101 76
Aspergillus_nidulans_FGSC_A4_ 107 79
Aspergillus_sydowii_v1.0 111 80
Aspergillus_versicolor_v1.0 106 75
Aspergillus_glaucus 104 76
Aspergillus_carbonarius_ITEM_5010_ 103 78
Neosartorya_fischeri_NRRL_181_ 105 78
Aspergillus_terreus_NIH2624_ 96 72
Aspergillus_tubingensis_v1.0 102 77
Aspergillus_wentii_v1.0 104 79
Aspergillus_oryzae_RIB40_ 97 76
Aspergillus_niger_22 98 75
Aspergillus_niger_ATCC_1015_ 58 44
Aspergillus_flavus_NRRL3357_ 96 73
Aspergillus_clavatus_NRRL_1_ 104 77
Penicillium_marneffei_ATCC_18224_ 114 82
Tuber_melanosporum_Mel28_22 97 75
Tuber_melanosporum_Vittad_   (Perigord truffle)   98 76
Hansenula_polymorpha_v2.0 89 64
Dekkera_bruxellensis_CBS_2499_v2.0 88 63
Pichia_membranifaciensv1.0 84 58
Candida_tanzawaensis_NRRL_Y-17324__v1.0 82 59
Candida_dubliniensis_CD36_ 86 64
Candida_tropicalis_MYA-3404_ 82 63
Candida_parapsilosis_ 75 57
Candida_albicans_SC5314 87 65
Lodderomyces_elongisporus_NRRL_YB-4239_ 74 56
Babjeviella_inositovora_NRRL_Y-12698_v1.0 86 63
Pichia_stipitis_CBS_6054_ 77 57
Candida_guilliermondii_ATCC_6260_ 74 54
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 87 64
Debaromyces_hansenii 88 65
Wickerhamomyces_anomalus 92 68
Pichia_pastoris_GS115_ 81 56
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 60 42
Yarrowia_lipolytica_CLIB122 88 67
Candida_lusitaniae_ATCC_42720_ 72 54
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 76 55
Vanderwaltozyma_polyspora_DSM_70294_ 90 60
Candida_glabrata_CBS138 88 62
Kluyveromyces_thermotolerans_CBS_6340 85 58
Lachancea_kluyveri_ 88 58
Kluyveromyces_waltii 80 53
Ashbya_gossypii_ATCC_10895_ 78 55
Zygosaccharomyces_rouxii_ 77 53
Saccharomyces_mikatae_MIT 90 63
Saccharomyces_paradoxus_MIT 86 61
Saccharomyces_cerevisiae_76   (Baker's yeast)   86 61
Saccharomyces_bayanus_MIT 88 60
Kluyveromyces_lactis 82 53
Schizosaccharomyces_cryophilus_OY26_22 108 80
Schizosaccharomyces_octosporus_yFS286_ 109 79
Schizosaccharomyces_japonicus_yFS275_ 105 76
Schizosaccharomyces_pombe   (Fission yeast)   107 78
Catenaria_anguillulae_PL171_v1.0 114 92
Allomyces_macrogynus_ATCC_38327_ 225 166
Spizellomyces_punctatus_DAOM_BR117_ 140 102
Dictyostelium_discoideum 156 105
Dictyostelium_purpureum_ 139 97
Entamoeba_dispar_1.2 118 87
Entamoeba_invadens_1.2 150 115
Entamoeba_histolytica_1 113 81
Selaginella_moellendorffii_ 426 302
Pinus_taeda   (Loblolly pine)   484 362
Picea_abies   (Norway spruce)   292 216
Eucalyptus_grandis_v201   (Rose gum)   568 411
Theobroma_cacao_B97-61/B2_v1   (Cacao)   406 307
Gossypium_raimondii_v221 1766 1231
Citrus_clementina_v165 750 534
Citrus_sinensis_v154   (Sweet orange)   830 610
Thellungiella_halophila_v173 464 332
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   622 440
Capsella_rubella_v183 464 327
Arabidopsis_lyrata_   (Lyrate rockcress)   467 328
Arabidopsis_thaliana_10   (Thale cress)   649 467
Carica_papaya_   (Papaya)   258 189
Medicago_truncatula_   (Barrel medic)   809 553
Phaseolus_vulgaris_v186   (French bean)   481 333
Glycine_max_v109   (Soybean)   920 665
Cucumis_sativus_v122   (Cucumber)   541 397
Fragaria_vesca_   (Wild strawberry)   369 265
Malus_domestica_v196   (Apple)   724 533
Prunus_persica_v139   (Peach)   354 262
Linum_usitatissimum_v200   (Flax)   614 435
Manihot_esculenta_v147   (Cassava)   614 426
Populus_trichocarpa_v156   (Black cottonwood)   629 454
Vitis_vinifera_   (Wine grape)   339 243
Mimulus_guttatus_v140   (Spotted monkey flower)   408 287
Solanum_lycopersicum_v.2.3   (Tomato)   412 298
Solanum_tuberosum_   (Potato)   676 510
Actinidia_chinensis_Hongyang_ 569 423
Aquilegia_coerulea_v195 845 611
Triticum_urartu_22 346 248
Triticum_aestivum_22   (Bread wheat)   1066 781
Aegilops_tauschii_22 358 257
Brachypodium_distachyon_   (Stiff brome)   497 354
Oryza_barthii_22   (African wild rice)   510 376
Oryza_meridionalis_22 565 401
Oryza_glumaepatula_22 594 448
Oryza_glaberrima   (African rice)   359 264
Oryza_punctata_22 609 439
Oryza_nivara_22 592 435
Oryza_brachyantha_22   (Malo sina)   341 248
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   688 520
Oryza_sativa_v193   (Rice)   673 508
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   465 341
Panicum_virgatum_v202   (Switchgrass)   827 617
Setaria_italica_v164   (Foxtail millet)   502 365
Zea_mays_subsp._mays_   (Maize)   936 713
Zea_mays_v181   (Maize)   1014 767
Sorghum_bicolor_   (Sorghum)   379 263
Musa_balbisiana   (Balbis banana)   503 356
Musa_acuminata_22   (Wild Malaysian banana)   543 382
Amborella_trichopoda_22 286 204
Physcomitrella_patens 286 211
Coccomyxa_subellipsoidea_sp._C-169_v2 135 93
Asterochloris_sp._Cgr/DA1pho_v1.0 104 72
Chlorella_variabilis_sp._NC64A_ 143 102
Chlorella_vulgaris_ 138 96
Volvox_carteri_f._nagariensis_ 145 102
Volvox_carteri_v199 144 100
Chlamydomonas_reinhardtii_4.0 141 99
Ostreococcus_sp._RCC809_ 87 70
Ostreococcus_lucimarinus_CCE9901_ 89 70
Ostreococcus_tauri_ 85 64
Bathycoccus_prasinos_ 94 68
Micromonas_sp._RCC299_ 116 90
Micromonas_pusilla_CCMP1545_v3.0 135 103
Cyanidioschyzon_merolae_strain_10D_22 47 34
Cyanidioschyzon_merolae 45 33
Porphyridium_purpureum_02_2012 66 50
Thecamonas_trahens_ATCC_50062_ 97 68
Bigelowiella_natans_CCMP2755_22 212 153
Giardia_lamblia_2.3 22 17
Cyanophora_paradoxa_ 148 120
Leishmania_mexicana_2.4 104 85
Leishmania_major_strain_Friedlin_ 106 85
Leishmania_infantum_JPCM5_2.4 104 85
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 105 83
Trypanosoma_vivax_ 102 81
Trypanosoma_cruzi_strain_CL_Brener 93 74
Trypanosoma_congolense_2.4 115 92
Trypanosoma_brucei_gambiense_v4.1 106 84
Trypanosoma_brucei_TREU927_v4.1 108 85
Ectocarpus_siliculosus 153 106
Aureococcus_anophagefferens_ 94 77
Albugo_laibachii_22 134 102
Pythium_iwayamai_DAOM_BR242034_22 100 79
Pythium_arrhenomanes_ATCC_12531_22 108 77
Pythium_ultimum_v1.7-2 118 89
Pythium_aphanidermatum_DAOM_BR444_22 107 80
Pythium_irregulare_DAOM_BR486_22 121 89
Pythium_vexans_DAOM_BR484_22 120 88
Phytophthora_ramorum_1.1   (Sudden oak death agent)   110 80
Phytophthora_sojae_1.1 104 79
Phytophthora_infestans_T30-4_ 117 90
Phytophthora_capsici_ 99 77
Hyaloperonospora_arabidopsidis_22 112 82
Phaeodactylum_tricornutumCCAP_1055/1 83 69
Fragilariopsis_cylindrus 161 134
Thalassiosira_pseudonana_CCMP1335 86 71
Perkinsus_marinus_ATCC_50983_ 448 328
Paramecium_tetraurelia_ 325 235
Tetrahymena_thermophila_SB210_1_ 142 101
Ichthyophthirius_multifiliis_strain_G5_ 69 54
Cryptosporidium_hominis 64 46
Cryptosporidium_muris 80 59
Cryptosporidium_parvum_Iowa_II 73 52
Neospora_caninum 119 90
Toxoplasma_gondii_VEG 113 88
Toxoplasma_gondii_ME49 122 93
Toxoplasma_gondii_GT1 112 85
Babesia_bovis_T2Bo_ 153 119
Theileria_parva__ 76 57
Theileria_annulata 76 60
Plasmodium_falciparum_3D7_ 106 82
Plasmodium_vivax_SaI-1_7.0 100 78
Plasmodium_knowlesi_strain_H_ 102 79
Plasmodium_yoelii_ssp._yoelii_1_ 100 78
Plasmodium_chabaudi_ 98 76
Plasmodium_berghei_ANKA_ 100 77
Symbiodinium_minutum_clade_B1_v1.2 503 411
Naegleria_gruberi_ 99 68
Trichomonas_vaginalis_ 242 197
Guillardia_theta_CCMP2712_v1.0_ 191 156
Emiliania_huxleyi_CCMP1516_ 201 166
Leptolyngbya_sp._PCC_7376 3 3
Pseudanabaena_sp._PCC_7367 3 3
Acaryochloris_marina_MBIC11017 12 12
Synechocystis_sp._PCC_6803 3 3
Thermosynechococcus_sp._NK55 2 2
Thermosynechococcus_elongatus_BP-1 3 3
Synechococcus_sp._PCC_7502 3 3
Synechococcus_sp._PCC_6312 4 4
Synechococcus_sp._CC9311 3 3
Synechococcus_elongatus_PCC_7942 3 3
Prochlorococcus_marinus_str._MIT_9515 3 3
Microcoleus_sp._PCC_7113 8 8
Trichodesmium_erythraeum_IMS101 5 5
Geitlerinema_sp._PCC_7407 6 6
Cyanothece_sp._PCC_8802 4 4
Gloeocapsa_sp._PCC_7428 6 6
cyanobacterium_UCYN-A 4 4
Halothece_sp._PCC_7418 4 4
Microcystis_aeruginosa_NIES-843 3 3
Gloeobacter_violaceus_PCC_7421 4 4
Rivularia_sp._PCC_7116 6 6
Calothrix_sp._PCC_7507 6 6
Anabaena_variabilis_ATCC_29413 8 8
'Nostoc_azollae'_0708 5 5
Nostoc_sp._PCC_7107 6 6
Nostoc_punctiforme_PCC_73102 5 5
Nostoc_sp._PCC_7120 8 8
Nostoc_sp._PCC_7524 7 7
Anabaena_sp._90 5 5
Streptomyces_violaceusniger_Tu_4113 1 1
Caldilinea_aerophila_DSM_14535_=_NBRC_104270 1 1
Dehalogenimonas_lykanthroporepellens_BL-DC-9 1 1
Anaerolinea_thermophila_UNI-1 1 1
Chloroflexus_sp._MS-G 2 2
Chloroflexus_sp._Y-400-fl 2 2
Chloroflexus_aggregans_DSM_9485 2 2
Chloroflexus_aurantiacus_J-10-fl 2 2
Symbiobacterium_thermophilum_IAM_14863 5 5
Sulfobacillus_acidophilus_DSM_10332 1 1
Candidatus_Desulforudis_audaxviator_MP104C 1 1
Thermincola_potens_JR 1 1
Pelotomaculum_thermopropionicum_SI 1 1
Desulfosporosinus_acidiphilus_SJ4 1 1
Desulfosporosinus_orientis_DSM_765 1 1
Dehalobacter_sp._DCA 1 1
Dehalobacter_sp._CF 1 1
Syntrophobotulus_glycolicus_DSM_8271 1 1
Desulfitobacterium_dehalogenans_ATCC_51507 1 1
Desulfotomaculum_reducens_MI-1 1 1
Desulfotomaculum_acetoxidans_DSM_771 1 1
Desulfotomaculum_kuznetsovii_DSM_6115 1 1
Desulfotomaculum_carboxydivorans_CO-1-SRB 1 1
Desulfotomaculum_ruminis_DSM_2154 1 1
Heliobacterium_modesticaldum_Ice1 1 1
Carboxydothermus_hydrogenoformans_Z-2901 1 1
Moorella_thermoacetica_ATCC_39073 1 1
Ammonifex_degensii_KC4 1 1
Ignavibacterium_album_JCM_16511 3 3
Pelodictyon_phaeoclathratiforme_BU-1 2 2
Chlorobium_luteolum_DSM_273 2 2
Chlorobium_chlorochromatii_CaD3 1 1
Chlorobium_phaeobacteroides_DSM_266 2 2
Chlorobium_phaeovibrioides_DSM_265 2 2
Chlorobium_limicola_DSM_245 2 2
Chlorobaculum_parvum_NCIB_8327 2 2
Chlorobium_tepidum_TLS 1 1
Chloroherpeton_thalassium_ATCC_35110 2 2
Prosthecochloris_aestuarii_DSM_271 2 2
Haliscomenobacter_hydrossis_DSM_1100 2 2
Saprospira_grandis_str._Lewin 1 1
Niastella_koreensis_GR20-10 12 12
Chitinophaga_pinensis_DSM_2588 3 3
Flexibacter_litoralis_DSM_6794 2 2
Leadbetterella_byssophila_DSM_17132 4 4
Dyadobacter_fermentans_DSM_18053 1 1
Cytophaga_hutchinsonii_ATCC_33406 1 1
Runella_slithyformis_DSM_19594 1 1
Parabacteroides_distasonis_ATCC_8503 4 4
Tannerella_forsythia_ATCC_43037 1 1
Paludibacter_propionicigenes_WB4 2 2
Odoribacter_splanchnicus_DSM_20712 3 3
Candidatus_Azobacteroides_pseudotrichonymphae_genomovar._CFP2 1 1
Bacteroides_sp._CF50 2 2
Prevotella_denticola_F0289 1 1
Porphyromonas_asaccharolytica_DSM_20707 1 1
Porphyromonas_gingivalis_ATCC_33277 2 2
Alistipes_finegoldii_DSM_17242 1 1
Bacteroides_helcogenes_P_36-108 2 2
Bacteroides_vulgatus_ATCC_8482 4 4
Bacteroides_thetaiotaomicron_VPI-5482 3 3
Bacteroides_fragilis_YCH46 4 4
Pedobacter_heparinus_DSM_2366 3 3
Fluviicola_taffensis_DSM_16823 2 2
Owenweeksia_hongkongensis_DSM_17368 1 1
Flavobacteriaceae_bacterium_3519-10 1 1
Flavobacterium_psychrophilum_JIP02/86 2 2
Flavobacterium_branchiophilum_FL-15 2 2
Flavobacterium_columnare_ATCC_49512 1 1
Flavobacterium_johnsoniae_UW101 2 2
Blattabacterium_sp._(Nauphoeta_cinerea) 1 1
Blattabacterium_sp._(Blattella_germanica)_str._Bge 1 1
Waddlia_chondrophila_WSU_86-1044 1 1
Candidatus_Protochlamydia_amoebophila_UWE25 1 1
Parachlamydia_acanthamoebae_UV-7 1 1
Simkania_negevensis_Z 1 1
Phycisphaera_mikurensis_NBRC_102666 2 2
Isosphaera_pallida_ATCC_43644 2 2
Planctomyces_limnophilus_DSM_3776 2 2
Rhodopirellula_baltica_SH_1 1 1
Pirellula_staleyi_DSM_6068 2 2
Methylacidiphilum_infernorum_V4 2 2
Coraliomargarita_akajimensis_DSM_45221 3 3
Opitutus_terrae_PB90-1 1 1
Akkermansia_muciniphila_ATCC_BAA-835 1 1
Turneriella_parva_DSM_21527 2 2
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._L550 3 3
Leptospira_interrogans_serovar_Lai_str._IPAV 3 3
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Paris)' 4 4
Spirochaeta_smaragdinae_DSM_11293 3 3
Sphaerochaeta_pleomorpha_str._Grapes 3 3
Sphaerochaeta_globus_str._Buddy 3 3
Sphaerochaeta_coccoides_DSM_17374 1 1
Spirochaeta_caldaria_DSM_7334 3 3
Treponema_azotonutricium_ZAS-9 1 1
Treponema_primitia_ZAS-2 1 1
Treponema_brennaborense_DSM_12168 2 2
Treponema_paraluiscuniculi_Cuniculi_A 1 1
Treponema_succinifaciens_DSM_2489 1 1
Treponema_pallidum_subsp._pallidum_SS14 2 2
Treponema_denticola_ATCC_35405 1 1
Spirochaeta_africana_DSM_8902 2 2
Spirochaeta_thermophila_DSM_6192 2 2
Desulfurispirillum_indicum_S5 3 3
Denitrovibrio_acetiphilus_DSM_12809 3 3
Dictyoglomus_turgidum_DSM_6724 2 2
Dictyoglomus_thermophilum_H-6-12 2 2
Candidatus_Chloracidobacterium_thermophilum_B 1 1
Candidatus_Solibacter_usitatus_Ellin6076 4 4
Candidatus_Koribacter_versatilis_Ellin345 1 1
Candidatus_Nitrospira_defluvii 3 3
Candidatus_Methylomirabilis_oxyfera 1 1
candidate_division_WWE3_bacterium_RAAC2_WWE3_1 1 1
candidate_division_SR1_bacterium_RAAC1_SR1_1 1 1
Candidatus_Saccharibacteria_bacterium_RAAC3_TM7_1 1 1
Candidatus_Saccharimonas_aalborgensis 2 2
Bacteriovorax_marinus_SJ 1 1
Bdellovibrio_bacteriovorus_HD100 3 3
Nautilia_profundicola_AmH 1 1
Sulfurospirillum_deleyianum_DSM_6946 1 1
Sulfurospirillum_barnesii_SES-3 1 1
Arcobacter_sp._L 1 1
Arcobacter_nitrofigilis_DSM_7299 1 1
Arcobacter_butzleri_RM4018 1 1
Campylobacter_curvus_525.92 1 1
Campylobacter_concisus_13826 1 1
Campylobacter_sp._03-427 1 1
Campylobacter_fetus_subsp._fetus_82-40 1 1
uncultured_Sulfuricurvum_sp._RIFRC-1 1 1
Sulfuricurvum_kujiense_DSM_16994 1 1
Helicobacter_cetorum_MIT_00-7128 1 1
Helicobacter_bizzozeronii_CIII-1 1 1
Helicobacter_hepaticus_ATCC_51449 1 1
Helicobacter_felis_ATCC_49179 1 1
Helicobacter_cinaedi_PAGU611 1 1
Helicobacter_acinonychis_str._Sheeba 1 1
Helicobacter_pylori_B38 1 1
Nitratiruptor_sp._SB155-2 1 1
Desulfarculus_baarsii_DSM_2075 1 1
Desulfobacca_acetoxidans_DSM_11109 2 2
Desulfomonile_tiedjei_DSM_6799 5 5
Syntrophobacter_fumaroxidans_MPOB 2 2
Desulfobulbus_propionicus_DSM_2032 1 1
Desulfohalobium_retbaense_DSM_5692 2 2
Desulfomicrobium_baculatum_DSM_4028 3 3
Desulfovibrio_piezophilus 4 4
Desulfovibrio_aespoeensis_Aspo-2 4 4
Desulfovibrio_magneticus_RS-1 4 4
Desulfovibrio_alaskensis_G20 2 2
Desulfovibrio_vulgaris_subsp._vulgaris_DP4 3 3
Desulfovibrio_salexigens_DSM_2638 3 3
Desulfovibrio_desulfuricans_subsp._desulfuricans_str._ATCC_27774 3 3
Desulfovibrio_africanus_str._Walvis_Bay 4 4
Hippea_maritima_DSM_10411 1 1
Geobacter_daltonii_FRC-32 1 1
Geobacter_sp._M21 1 1
Geobacter_uraniireducens_Rf4 2 2
Geobacter_lovleyi_SZ 1 1
Geobacter_bemidjiensis_Bem 1 1
Geobacter_sulfurreducens_KN400 1 1
Geobacter_metallireducens_GS-15 1 1
Pelobacter_propionicus_DSM_2379 1 1
Pelobacter_carbinolicus_DSM_2380 1 1
Babela_massiliensis 1 1
Haliangium_ochraceum_DSM_14365 2 2
Sorangium_cellulosum_'So_ce_56' 7 6
Dechlorosoma_suillum_PS 1 1
Candidatus_Accumulibacter_phosphatis_clade_IIA_str._UW-1 2 2
Methylibium_petroleiphilum_PM1 1 1
Rubrivivax_gelatinosus_IL144 1 1
Leptothrix_cholodnii_SP-6 1 1
Burkholderia_phymatum_STM815 1 1
Ralstonia_eutropha_JMP134 3 3
Cupriavidus_metallidurans_CH34 1 1
Burkholderia_sp._RPE64 1 1
Verminephrobacter_eiseniae_EF01-2 2 2
Alicycliphilus_denitrificans_K601 3 3
Ramlibacter_tataouinensis_TTB310 3 3
Delftia_sp._Cs1-4 3 3
Delftia_acidovorans_SPH-1 3 3
Polaromonas_sp._JS666 2 2
Polaromonas_naphthalenivorans_CJ2 5 5
Variovorax_paradoxus_S110 2 2
Rhodoferax_ferrireducens_T118 1 1
Acidovorax_ebreus_TPSY 3 3
Acidovorax_sp._KKS102 3 3
Acidovorax_sp._JS42 3 3
Acidovorax_citrulli_AAC00-1 3 3
Acidovorax_avenae_subsp._avenae_ATCC_19860 2 2
Comamonas_testosteroni_CNB-2 3 3
Saccharophagus_degradans_2-40 1 1
Oceanimonas_sp._GK1 1 1
Tolumonas_auensis_DSM_9187 1 1
Aeromonas_veronii_B565 2 2
Aeromonas_salmonicida_subsp._salmonicida_A449 2 2
Aeromonas_hydrophila_subsp._hydrophila_ATCC_7966 2 2
Aliivibrio_salmonicida_LFI1238 2 2
Vibrio_fischeri_MJ11 2 2
Vibrio_sp._Ex25 2 2
Vibrio_harveyi_ATCC_BAA-1116 2 2
Vibrio_parahaemolyticus_RIMD_2210633 2 2
Vibrio_splendidus_LGP32 2 2
Vibrio_anguillarum_775 1 1
Vibrio_furnissii_NCTC_11218 1 1
Vibrio_vulnificus_MO6-24/O 1 1
Vibrio_cholerae_O395 1 1
Photobacterium_profundum_SS9 2 2
Psychromonas_ingrahamii_37 2 2
Psychromonas_sp._CNPT3 2 2
Ferrimonas_balearica_DSM_9799 1 1
Shewanella_piezotolerans_WP3 1 1
Shewanella_loihica_PV-4 1 1
Shewanella_halifaxensis_HAW-EB4 1 1
Shewanella_sediminis_HAW-EB3 1 1
Shewanella_denitrificans_OS217 1 1
Shewanella_pealeana_ATCC_700345 1 1
Shewanella_oneidensis_MR-1 1 1
Shewanella_baltica_OS185 1 1
Shewanella_woodyi_ATCC_51908 1 1
Shewanella_sp._MR-4 1 1
Shewanella_amazonensis_SB2B 1 1
Shewanella_violacea_DSS12 1 1
Shewanella_frigidimarina_NCIMB_400 1 1
Shewanella_putrefaciens_CN-32 1 1
Colwellia_psychrerythraea_34H 2 2
Pseudoalteromonas_sp._SM9913 2 2
Pseudoalteromonas_atlantica_T6c 2 2
Pseudoalteromonas_haloplanktis_TAC125 2 2
Glaciecola_sp._4H-3-7+YE-5 2 2
Glaciecola_nitratireducens_FR1064 2 2
Marinobacter_sp._BSs20148 1 1
Alteromonas_sp._SN2 2 2
Alteromonas_macleodii_str._'Deep_ecotype' 2 2
Kangiella_koreensis_DSM_16069 1 1
Hahella_chejuensis_KCTC_2396 2 2
Marinomonas_sp._MWYL1 1 1
Methylomicrobium_alcaliphilum 1 1
Methylomonas_methanica_MC09 4 4
Methylococcus_capsulatus_str._Bath 2 2
Dichelobacter_nodosus_VCS1703A 1 1
Halothiobacillus_neapolitanus_c2 1 1
Spiribacter_sp._UAH-SP71 1 1
Alkalilimnicola_ehrlichii_MLHE-1 1 1
Allochromatium_vinosum_DSM_180 3 3
Thiocystis_violascens_DSM_198 3 3
Nitrosococcus_watsonii_C-113 2 2
Nitrosococcus_halophilus_Nc4 3 3
Nitrosococcus_oceani_ATCC_19707 2 2
Coxiella_burnetii_Dugway_5J108-111 2 2
Legionella_longbeachae_NSW150 1 1
Legionella_pneumophila_str._Corby 1 1
gamma_proteobacterium_HdN1 1 1
Psychrobacter_sp._G 1 1
Psychrobacter_arcticus_273-4 1 1
Psychrobacter_cryohalolentis_K5 1 1
Acinetobacter_oleivorans_DR1 1 1
Acinetobacter_calcoaceticus_PHEA-2 1 1
Acinetobacter_baumannii_ATCC_17978 1 1
Acinetobacter_sp._ADP1 1 1
Methanospirillum_hungatei_JF-1 4 4
Methanoplanus_petrolearius_DSM_11571 1 1
Methanoculleus_bourgensis_MS2 1 1
Methanoculleus_marisnigri_JR1 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   759 517
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   620 420
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   261 182
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   202 150
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   273 195
Cryptococcus_neoformans_var._grubii_H99_ 101 78
Cryptococcus_neoformans_B-3501A_ 101 79
Cryptococcus_neoformans_JEC21_ 86 67
Paracoccidioides_brasiliensis_Pb01_ 95 70
Paracoccidioides_brasiliensis_Pb03_ 95 70
Coccidioides_posadasii_str._Silveira_ 101 73
Coccidioides_immitis_RMSCC_3703_ 88 65
Coccidioides_immitis_RMSCC_2394_ 101 73
Coccidioides_immitis_H538.4_ 85 65
Ajellomyces_dermatitidis_ER-3_ 100 76
Histoplasma_capsulatum_H143 93 71
Histoplasma_capsulatum_H88 99 74
Histoplasma_capsulatum_G186AR 101 77
Aspergillus_fumigatus_A1163_ 104 76
Candida_albicans_WO-1_ 84 63
Saccharomyces_cerevisiae_UC5 79 55
Saccharomyces_cerevisiae_PW5 78 58
Saccharomyces_cerevisiae_FL100 43 31
Saccharomyces_cerevisiae_CLIB382 4 3
Saccharomyces_cerevisiae_CLIB324 40 27
Saccharomyces_cerevisiae_CBS7960 71 51
Saccharomyces_cerevisiae_YJM269 68 48
Saccharomyces_cerevisiae_T7 86 61
Saccharomyces_cerevisiae_FostersB 71 53
Saccharomyces_cerevisiae_FostersO 64 46
Saccharomyces_cerevisiae_VL3 75 54
Saccharomyces_cerevisiae_Vin13 70 53
Saccharomyces_cerevisiae_LalvinQA23 72 52
Saccharomyces_cerevisiae_AWRI796 67 50
Saccharomyces_cerevisiae_Sigma1278b 85 61
Saccharomyces_cerevisiae_W303 84 60
Saccharomyces_cerevisiae_JAY291 85 59
Saccharomyces_cerevisiae_AWRI1631 62 47
Saccharomyces_cerevisiae_YPS163 24 21
Saccharomyces_cerevisiae_M22 23 16
Saccharomyces_cerevisiae_T73 38 29
Saccharomyces_cerevisiae_CLIB215 62 45
Saccharomyces_cerevisiae_Y10 32 23
Saccharomyces_cerevisiae_YJM789_ 86 61
Saccharomyces_cerevisiae_YJM789 86 61
Saccharomyces_cerevisiae_RM11-1a 81 58
Saccharomyces_cerevisiae_RM11-1a_ 76 55
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   86 61
Schizosaccharomyces_pombe_972h-_ 107 78
Batrachochytrium_dendrobatidis_JEL423_ 115 88
Batrachochytrium_dendrobatidis_JAM81_ 115 85
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   350 255
Hordeum_vulgare_22   (Domesticated barley)   759 585
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   409 319
Trypanosoma_brucei_Lister_427_v4.1 107 84
Neospora_caninum_Nc-Liverpool_6.2 119 90
Plasmodium_falciparum_HB3_ 95 75
Plasmodium_falciparum_Dd2_ 61 52
Chroococcidiopsis_thermalis_PCC_7203 9 9
Chamaesiphon_minutus_PCC_6605 3 3
Synechocystis_sp._PCC_6803_substr._PCC-P 3 3
Synechocystis_sp._PCC_6803_substr._PCC-N 3 3
Synechocystis_sp._PCC_6803_substr._GT-I 3 3
Synechocystis_sp._PCC_6803 3 3
Cyanobium_gracile_PCC_6307 5 5
Dactylococcopsis_salina_PCC_8305 3 3
Synechococcus_sp._JA-2-3B'a(2-13) 4 4
Synechococcus_sp._JA-3-3Ab 4 4
Synechococcus_sp._CC9902 4 4
Synechococcus_sp._RCC307 3 3
Synechococcus_sp._CC9605 4 4
Synechococcus_sp._WH_8102 4 4
Synechococcus_sp._WH_7803 3 3
Synechococcus_sp._PCC_7002 3 3
Synechococcus_elongatus_PCC_6301 3 3
Prochlorococcus_marinus_str._NATL1A 3 3
Prochlorococcus_marinus_str._MIT_9301 2 2
Prochlorococcus_marinus_str._AS9601 2 2
Prochlorococcus_marinus_subsp._marinus_str._CCMP1375 3 3
Prochlorococcus_marinus_subsp._pastoris_str._CCMP1986 3 3
Prochlorococcus_marinus_str._MIT_9215 2 2
Prochlorococcus_marinus_str._MIT_9211 3 3
Prochlorococcus_marinus_str._MIT_9313 3 3
Prochlorococcus_marinus_str._MIT_9312 3 3
Prochlorococcus_marinus_str._MIT_9303 3 3
Prochlorococcus_marinus_str._NATL2A 3 3
Crinalium_epipsammum_PCC_9333 6 6
Oscillatoria_nigro-viridis_PCC_7112 5 5
Oscillatoria_acuminata_PCC_6304 4 4
Arthrospira_platensis_NIES-39 4 4
Cyanothece_sp._PCC_7822 7 7
Cyanothece_sp._PCC_7425 6 6
Cyanothece_sp._PCC_7424 6 6
Cyanothece_sp._ATCC_51142 6 6
Cyanothece_sp._PCC_8801 4 4
Cyanobacterium_aponinum_PCC_10605 3 3
Cyanobacterium_stanieri_PCC_7202 4 4
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 5 5
Pleurocapsa_minor_Pleurocapsa_sp._PCC_7327 7 7
Stanieria_cyanosphaera_PCC_7437 6 6
Calothrix_parietina_Calothrix_sp._PCC_6303 5 5
Cylindrospermum_stagnale_PCC_7417 6 6
Anabaena_cylindrica_PCC_7122 4 4
Streptomyces_rapamycinicus_NRRL_5491 1 1
Chthonomonas_calidirosea_T49 1 1
Sulfobacillus_acidophilus_TPY 1 1
Desulfosporosinus_meridiei_DSM_13257 1 1
Desulfitobacterium_dichloroeliminans_LMG_P-21439 1 1
Desulfitobacterium_hafniense_DCB-2 1 1
Desulfotomaculum_gibsoniae_DSM_7213 1 1
Chlorobium_phaeobacteroides_BS1 2 2
Emticicia_oligotrophica_DSM_17448 2 2
Porphyromonas_gingivalis_TDC60 2 2
Porphyromonas_gingivalis_W83 2 2
Alistipes_shahii_WAL_8301 1 1
Bacteroides_xylanisolvens_XB1A 3 3
Bacteroides_fragilis_638R 4 4
Bacteroides_fragilis_NCTC_9343 4 4
Blattabacterium_sp._(Panesthia_angustipennis_spadica)_Blattabacterium_sp._(Panesthia_angustipennis_spadica)_str._BPAA 1 1
Blattabacterium_sp._(Blaberus_giganteus) 1 1
Blattabacterium_sp._(Blatta_orientalis)_Blattabacterium_sp._(Blatta_orientalis)_str._Tarazona 1 1
Blattabacterium_sp._(Periplaneta_americana)_str._BPLAN 1 1
Blattabacterium_sp._(Cryptocercus_punctulatus)_str._Cpu 1 1
Blattabacterium_sp._(Mastotermes_darwiniensis)_str._MADAR 1 1
Singulisphaera_acidiphila_DSM_18658 7 7
Leptospira_borgpetersenii_serovar_Hardjo-bovis_str._JB197 3 3
Leptospira_interrogans_serovar_Lai_str._56601 3 3
Leptospira_interrogans_serovar_Copenhageni_str._Fiocruz_L1-130 3 3
Leptospira_biflexa_serovar_Patoc_strain_'Patoc_1_(Ames)' 4 4
Treponema_pallidum_str._Fribourg-Blanc 1 1
Treponema_pallidum_subsp._pertenue_str._Gauthier 1 1
Treponema_pallidum_subsp._pertenue_str._CDC2 1 1
Treponema_pallidum_subsp._pertenue_str._SamoaD 1 1
Treponema_pallidum_subsp._pallidum_str._Mexico_A 1 1
Treponema_pallidum_subsp._pallidum_str._Chicago 1 1
Treponema_pallidum_subsp._pallidum_DAL-1 1 1
Treponema_pallidum_subsp._pallidum_str._Nichols 1 1
Spirochaeta_thermophila_DSM_6578 2 2
Bdellovibrio_exovorus_JSS 3 3
Bdellovibrio_bacteriovorus_str._Tiberius 3 3
Arcobacter_butzleri_7h1h 1 1
Arcobacter_butzleri_ED-1 1 1
Helicobacter_cetorum_MIT_99-5656 1 1
Helicobacter_pylori_BM012S 1 1
Helicobacter_pylori_BM012A 1 1
Helicobacter_pylori_SouthAfrica20 1 1
Helicobacter_pylori_UM298 1 1
Helicobacter_pylori_UM066 1 1
Helicobacter_pylori_UM037 1 1
Helicobacter_pylori_UM299 1 1
Helicobacter_pylori_UM032 1 1
Helicobacter_pylori_OK310 1 1
Helicobacter_pylori_OK113 1 1
Helicobacter_pylori_Rif2 1 1
Helicobacter_pylori_Rif1 1 1
Helicobacter_pylori_HUP-B14 1 1
Helicobacter_pylori_PeCan18 1 1
Helicobacter_pylori_Shi169 1 1
Helicobacter_pylori_Shi112 1 1
Helicobacter_pylori_Shi417 1 1
Helicobacter_pylori_Aklavik86 1 1
Helicobacter_pylori_Aklavik117 1 1
Helicobacter_pylori_SNT49 1 1
Helicobacter_pylori_Puno135 1 1
Helicobacter_pylori_Puno120 1 1
Helicobacter_pylori_ELS37 1 1
Helicobacter_pylori_Gambia94/24 1 1
Helicobacter_pylori_SouthAfrica7 1 1
Helicobacter_pylori_India7 1 1
Helicobacter_pylori_Lithuania75 1 1
Helicobacter_pylori_2017 1 1
Helicobacter_pylori_2018 1 1
Helicobacter_pylori_908 1 1
Helicobacter_pylori_F57 1 1
Helicobacter_pylori_F30 1 1
Helicobacter_pylori_F16 1 1
Helicobacter_pylori_Sat464 1 1
Helicobacter_pylori_Cuz20 1 1
Helicobacter_pylori_PeCan4 1 1
Helicobacter_pylori_SJM180 1 1
Helicobacter_pylori_B8 1 1
Helicobacter_pylori_52 1 1
Helicobacter_pylori_v225d 1 1
Helicobacter_pylori_83 1 1
Helicobacter_pylori_35A 1 1
Helicobacter_pylori_P12 1 1
Helicobacter_pylori_G27 1 1
Helicobacter_pylori_Shi470 1 1
Helicobacter_pylori_HPAG1 1 1
Helicobacter_pylori_51 1 1
Helicobacter_pylori_F32 1 1
Helicobacter_pylori_J99 1 1
Helicobacter_pylori_26695 1 1
Helicobacter_pylori_26695 1 1
Lawsonia_intracellularis_N343 1 1
Desulfovibrio_hydrothermalis_AM13_=_DSM_14728 6 6
Desulfovibrio_vulgaris_RCH1 3 3
Desulfovibrio_vulgaris_str._'Miyazaki_F' 3 3
Desulfovibrio_vulgaris_str._Hildenborough 3 3
Desulfovibrio_gigas_DSM_1382_=_ATCC_19364 1 1
Desulfovibrio_desulfuricans_ND132 3 3
Geobacter_sp._M18 1 1
Geobacter_sulfurreducens_PCA 1 1
Sorangium_cellulosum_So0157-2 3 3
Candidatus_Symbiobacter_mobilis_Comamonadaceae_bacterium_CR 1 1
Alicycliphilus_denitrificans_BC 3 3
Variovorax_paradoxus_B4 2 2
Variovorax_paradoxus_EPS 2 2
Aeromonas_hydrophila_ML09-119 2 2
Vibrio_fischeri_ES114 2 2
Vibrio_sp._EJY3 2 2
Vibrio_parahaemolyticus_BB22OP 1 1
Vibrio_alginolyticus_NBRC_15630_=_ATCC_17749 2 2
Vibrio_anguillarum_Listonella_anguillarum_M3 2 2
Vibrio_nigripulchritudo_VibrioScope 1 1
Vibrio_vulnificus_CMCP6 1 1
Vibrio_vulnificus_YJ016 1 1
Vibrio_cholerae_M66-2 1 1
Vibrio_cholerae_O395 1 1
Vibrio_cholerae_IEC224 1 1
Vibrio_cholerae_O1_str._2010EL-1786 1 1
Vibrio_cholerae_MJ-1236 1 1
Vibrio_cholerae_O1_biovar_El_Tor_str._N16961 1 1
Shewanella_sp._W3-18-1 1 1
Shewanella_sp._ANA-3 1 1
Shewanella_baltica_BA175 1 1
Shewanella_baltica_OS678 1 1
Shewanella_baltica_OS117 1 1
Shewanella_baltica_OS223 1 1
Shewanella_baltica_OS195 1 1
Shewanella_baltica_OS155 1 1
Shewanella_sp._MR-7 1 1
Shewanella_putrefaciens_200 1 1
Glaciecola_psychrophila_170 2 2
Alteromonas_macleodii_str._'Ionian_Sea_UM4b' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_UM7' 2 2
Alteromonas_macleodii_str._'Ionian_Sea_U8' 2 2
Alteromonas_macleodii_str._'Ionian_Sea_U7' 2 2
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1 1
Alteromonas_macleodii_str._'Aegean_Sea_MED64' 2 2
Alteromonas_macleodii_str._'English_Channel_615' 2 2
Alteromonas_macleodii_AltDE1 2 2
Alteromonas_macleodii_str._'English_Channel_673' 2 2
Alteromonas_macleodii_str._'Balearic_Sea_AD45' 2 2
Alteromonas_macleodii_str._'Black_Sea_11' 2 2
Alteromonas_macleodii_ATCC_27126 2 2
Spiribacter_salinus_M19-40 1 1
Thioflavicoccus_mobilis_8321 3 3
Coxiella_burnetii_CbuK_Q154 2 2
Coxiella_burnetii_CbuG_Q212 2 2
Coxiella_burnetii_RSA_331 2 2
Coxiella_burnetii_RSA_493 2 2
Legionella_pneumophila_str._Paris 1 1
Legionella_pneumophila_subsp._pneumophila_LPE509 1 1
Legionella_pneumophila_subsp._pneumophila_str._Thunder_Bay 1 1
Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila 1 1
Legionella_pneumophila_subsp._pneumophila_ATCC_43290 1 1
Legionella_pneumophila_2300/99_Alcoy 1 1
Acinetobacter_genomosp._13TU__RUH2624 1 1
Acinetobacter_sp.__SH024 1 1
Acinetobacter_calcoaceticus_ruh2202 1 1
Acinetobacter_baumannii_ZW85-1 1 1
Acinetobacter_baumannii_TYTH-1 1 1
Acinetobacter_baumannii_BJAB0868 1 1
Acinetobacter_baumannii_BJAB0715 1 1
Acinetobacter_baumannii_BJAB07104 1 1
Acinetobacter_baumannii_TCDC-AB0715 1 1
Acinetobacter_baumannii_D1279779 1 1
Acinetobacter_baumannii_MDR-TJ 1 1
Acinetobacter_baumannii_1656-2 1 1
Acinetobacter_baumannii__ATCC_19606 1 1
Acinetobacter_baumannii_AB307-0294 1 1
Acinetobacter_baumannii_AYE 1 1
Acinetobacter_baumannii_SDF 1 1
Acinetobacter_baumannii_MDR-ZJ06 1 1
Acinetobacter_baumannii_AB0057 1 1
Acinetobacter_baumannii_ACICU 1 1
Acinetobacter_radioresistens__SH164 1 1
Acinetobacter_junii__SH205 1 1
Acinetobacter_johnsonii__SH046 1 1
Acinetobacter_lwoffii__SH145 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   390 268
Pan_troglodytes_69_2.1.4   (Chimpanzee)   349 240
Gorilla_gorilla_69_3.1   (Western gorilla)   395 277
Pongo_abelii_69_2   (Sumatran orangutan)   357 247
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   334 232
Macaca_mulatta_69_1   (Rhesus monkey)   404 270
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   496 341
Otolemur_garnettii_69_3   (Small-eared galago)   404 279
Microcebus_murinus_69_1   (Gray mouse lemur)   258 187
Rattus_norvegicus_69_3.4   (Norway rat)   463 309
Mus_musculus_69_38   (House mouse)   408 279
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   274 189
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   347 241
Cavia_porcellus_69_3   (Domestic guinea pig)   346 238
Oryctolagus_cuniculus_69_2   (Rabbit)   380 261
Ochotona_princeps_69   (American pika)   252 181
Tupaia_belangeri_69   (Northern tree shrew)   247 178
Sus_scrofa_69_10.2   (Pig)   342 243
Bos_taurus_69_3.1   (Cattle)   380 258
Vicugna_pacos_69_1   (Alpaca)   215 152
Tursiops_truncatus_69_1   (Bottlenose dolphin)   312 216
Mustela_putorius_furo_69_1.0   (Domestic ferret)   382 260
Ailuropoda_melanoleuca_69_1   (Giant panda)   348 236
Canis_familiaris_69_3.1   (Dog)   383 265
Felis_catus_69   (Domestic cat)   218 163
Equus_caballus_69_2   (Horse)   326 223
Myotis_lucifugus_69_2.0   (Little brown bat)   434 306
Pteropus_vampyrus_69_1   (Large flying fox)   303 207
Sorex_araneus_69_1   (European shrew)   226 160
Erinaceus_europaeus_69   (Western European hedgehog)   235 170
Procavia_capensis_69_1   (Cape rock hyrax)   268 189
Loxodonta_africana_69_3   (African savanna elephant)   374 260
Echinops_telfairi_69   (Small Madagascar hedgehog)   304 214
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   233 168
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   228 159
Macropus_eugenii_69_1.0   (Tammar wallaby)   260 180
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   328 228
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   363 253
Ornithorhynchus_anatinus_69_5   (Platypus)   278 207
Petromyzon_marinus_69_7.0   (Sea lamprey)   154 118
Meleagris_gallopavo_69_2   (Turkey)   260 178
Gallus_gallus_69_2   (Chicken)   270 188
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   290 201
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   287 202
Anolis_carolinensis_69_2.0   (Green anole)   297 210
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   323 214
Latimeria_chalumnae_69_1   (Coelacanth)   318 216
Gadus_morhua_69_1   (Atlantic cod)   348 242
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   339 233
Takifugu_rubripes_69_4   (Torafugu)   353 235
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   374 251
Oryzias_latipes_69_1   (Japanese medaka)   367 247
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   382 258
Oreochromis_niloticus_69_1.0   (Nile tilapia)   390 257
Danio_rerio_69_9   (Zebrafish)   430 288
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   149 107
Ciona_intestinalis_69   (Vase tunicate)   183 129
Drosophila_melanogaster_69_5   (Fruit fly)   214 157
Caenorhabditis_elegans_69_215   (Roundworm)   171 125
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   86 61
Arabidopsis_thaliana_10   (Thale cress)   395 280

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1751 1295
Homo_sapiens__(NCBI_version)   (Human)   754 497
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   382 262
Heliconius_numata__(Incomplete) 87 79
Loa_loa_v3.3_(Request)   (Eye worm)   199 141
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   186 153
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   174 130
Moniliophthora_perniciosa_FA553__(Genome_survey) 48 43
Encephalitozoon_intestinalis__(endoparasite) 29 24
Encephalitozoon_cuniculi_(endoparasite) 28 23
Picea_sitchensis__(Incomplete)   (Sitka spruce)   76 55
Lotus_japonicus__(Early_assembly) 367 304
Malus_x_domestica_(Duplicate)   (Apple)   724 533
Ricinus_communis__(Early_assembly)   (Castor bean)   289 206
Nicotiana_benthamiana_0.4.4_(Early_draft) 761 531
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   403 293
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   412 298
Phoenix_dactylifera__(Early_draft)   (Date palm)   311 253
Guillardia_theta_(nucleomorph) 7 4
Vibrio_campbellii_ATCC_BAA-1116_(Duplicate_of_NC) 2 2
NCBI_plasmid_sequences_(Plasmids) 13 13
PDB_chains_(SCOP_1.75)_(PDB) 138 130
Protein_Data_Bank_(all_PDB_sequenc) 1142 1020
UniProt__viral_sequences_(Viral) 33 33
Core_Eukaryotic_Genes_458_(CEGMA) 6 6
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 2400 2400
NCBI_viral_sequences_(Viral) 39 39
Protozoadb_2010_08_(Protozoadb) 3466 2701
STRING_v9.0.5_(STRING) 23839 17312
Uniprot_2018_03_genome 318313 233604
TargetDB__(Targets) 933 751
NCBI_2017_08_genome 379310 260815

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]