SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Domain combinations for SH2 domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


Jump to [ Top of page · Domain combinations in groups of genomes ]

Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a SH2 domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   413 378
Pan_troglodytes_76_2.1.4   (Chimpanzee)   117 107
Gorilla_gorilla_76_3.1   (Western gorilla)   174 158
Pongo_abelii_76_2   (Sumatran orangutan)   128 116
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   126 118
Papio_anubis_76   (Olive baboon)   136 125
Macaca_mulatta_76_1   (Rhesus monkey)   190 167
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   290 258
Otolemur_garnettii_76_3   (Small-eared galago)   125 114
Microcebus_murinus_76_1   (Gray mouse lemur)   95 88
Rattus_norvegicus_76_5.0   (Norway rat)   141 128
Mus_musculus_76_38   (House mouse)   281 262
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   109 100
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   120 110
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   130 119
Cavia_porcellus_76_3   (Domestic guinea pig)   119 109
Oryctolagus_cuniculus_76_2   (Rabbit)   119 108
Ochotona_princeps_76   (American pika)   98 89
Tupaia_belangeri_76   (Northern tree shrew)   84 78
Sus_scrofa_76_10.2   (Pig)   180 161
Bos_taurus_76_3.1   (Cattle)   135 123
Ovis_aries_76_3.1   (Sheep)   136 124
Vicugna_pacos_76_1   (Alpaca)   62 57
Tursiops_truncatus_76_1   (Bottlenose dolphin)   113 105
Mustela_putorius_furo_76_1.0   (Domestic ferret)   122 112
Ailuropoda_melanoleuca_76_1   (Giant panda)   136 122
Canis_familiaris_76_3.1   (Dog)   146 135
Felis_catus_76_6.2   (Domestic cat)   126 115
Equus_caballus_76_2   (Horse)   131 122
Myotis_lucifugus_76_2.0   (Little brown bat)   119 109
Pteropus_vampyrus_76_1   (Large flying fox)   117 106
Sorex_araneus_76_1   (European shrew)   76 69
Erinaceus_europaeus_76   (Western European hedgehog)   82 74
Procavia_capensis_76_1   (Cape rock hyrax)   99 90
Loxodonta_africana_76_3   (African savanna elephant)   157 144
Echinops_telfairi_76   (Small Madagascar hedgehog)   89 87
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   152 142
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   58 54
Macropus_eugenii_76_1.0   (Tammar wallaby)   103 94
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   128 116
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   124 114
Ornithorhynchus_anatinus_76_5   (Platypus)   93 85
Saccoglossus_kowalevskii_v3.0 87 82
Petromyzon_marinus_76_7.0   (Sea lamprey)   49 46
Meleagris_gallopavo_76_2   (Turkey)   121 108
Gallus_gallus_76_4   (Chicken)   116 102
Anas_platyrhynchos_76_1.0   (Mallard)   102 90
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   105 94
Ficedula_albicollis_76_1.0   (Collared flycatcher)   102 92
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   130 115
Anolis_carolinensis_76_2.0   (Green anole)   107 97
Xenopus_laevis_   (African clawed frog)   221 182
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   133 117
Latimeria_chalumnae_76_1   (Coelacanth)   149 135
Lepisosteus_oculatus_76   (Spotted gar)   162 146
Gadus_morhua_76_1   (Atlantic cod)   145 129
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   186 169
Takifugu_rubripes_76_4   (Torafugu)   406 344
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   175 157
Oryzias_latipes_76_1   (Japanese medaka)   151 133
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   150 135
Poecilia_formosa_76   (Amazon molly)   155 139
Oreochromis_niloticus_76_1.0   (Nile tilapia)   196 175
Astyanax_mexicanus_76   (Mexican tetra)   150 140
Danio_rerio_76_9   (Zebrafish)   264 239
Oikopleura_dioica 33 30
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   107 94
Ciona_intestinalis_76   (Vase tunicate)   64 57
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   61 55
Adineta_vaga 99 86
Octopus_bimaculoides_280 60 56
Crassostrea_gigas_22   (Pacific oyster)   62 53
Lottia_gigantea_   (Owl limpet)   33 30
Helobdella_robusta_ 73 69
Capitella_sp._I_ 47 42
Danaus_plexippus_OGS1.0   (Monarch butterfly)   41 35
Heliconius_melpomene_   (Postman butterfly)   30 24
Bombyx_mori_   (Domestic silkworm)   35 31
Nasonia_vitripennis_   (Jewel wasp)   29 25
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   86 76
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   34 31
Linepithema_humile_v1.1   (Argentine ant)   36 31
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   34 30
Solenopsis_invicta_v.2.2.3   (Red fire ant)   27 23
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   35 31
Atta_cephalotes_v1.1 35 31
Camponotus_floridanus_v3.3   (Florida carpenter ant)   35 31
Lucilia_cuprina   (Australian sheep blowfly)   31 26
Drosophila_grimshawi_1.3 41 37
Drosophila_willistoni_1.3 38 34
Drosophila_pseudoobscura_2.13 36 33
Drosophila_persimilis_1.3 36 33
Drosophila_suzukii 38 31
Drosophila_yakuba_1.3 39 34
Drosophila_simulans_1.3 32 29
Drosophila_sechellia_1.3 39 34
Drosophila_melanogaster_76_5   (Fruit fly)   130 119
Drosophila_erecta_1.3 39 34
Drosophila_ananassae_1.3 40 35
Drosophila_virilis_1.2 40 35
Drosophila_mojavensis_1.3 40 34
Megaselia_scalaris_22 13 12
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   45 40
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   38 32
Anopheles_darlingi_22   (American malaria mosquito)   30 25
Anopheles_gambiae_49_3j   (African malaria mosquito)   45 38
Tribolium_castaneum_3.0   (Red flour beetle)   41 35
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   39 33
Acyrthosiphon_pisum_   (Pea aphid)   45 37
Rhodnius_prolixus_22 37 32
Daphnia_pulex_   (Common water flea)   22 19
Strigamia_maritima_22 40 36
Sarcoptes_scabiei 26 21
Tetranychus_urticae_   (Two-spotted spider mite)   35 29
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   38 32
Pristionchus_pacificus_ 63 61
Meloidogyne_incognita_   (Southern root-knot nematode)   31 28
Meloidogyne_hapla_ 25 23
Onchocerca_volvulus_22 43 39
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   67 59
Caenorhabditis_japonica_ 66 62
Caenorhabditis_brenneri_ 93 87
Caenorhabditis_remanei_ 79 75
Caenorhabditis_elegans_76_235   (Roundworm)   101 96
Caenorhabditis_briggsae_2 69 65
Trichinella_spiralis_22 32 28
Hymenolepis_microstoma_ 48 43
Echinococcus_multilocularis_ 52 46
Echinococcus_granulosus_ 50 44
Taenia_solium_   (Pork tapeworm)   49 43
Schistosoma_mansoni_ 43 38
Mnemiopsis_leidyi   (Sea walnut)   41 38
Thelohanellus_kitauei 12 12
Acropora_digitifera_v1.0 54 47
Nematostella_vectensis_1.0   (Starlet sea anemone)   30 29
Hydra_vulgaris 47 40
Amphimedon_queenslandica 111 97
Trichoplax_adhaerens_ 28 27
Proterospongia_sp._ATCC_50818_ 182 140
Monosiga_brevicollis_ 152 108
Sphaeroforma_arctica_JP610_ 20 19
Capsaspora_owczarzaki_ATCC_30864_ 38 34
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Mortierella_verticillata_NRRL_6337_ 1 1
Phycomyces_blakesleeanus_ 1 1
Rhizopus_oryzae_RA_99-880_ 1 1
Mucor_circinelloides_ 1 1
Rhizomucor_miehei_CAU432_ 1 1
Malassezia_globosa_CBS_7966_ 2 2
Sporisorium_reilianum_22 1 1
Ustilago_maydis_ 1 1
Mixia_osmundae_IAM_14324_v1.0 1 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1 1
Melampsora_laricis-populina_ 1 1
Rhodotorula_graminis_WP1_v1.0 1 1
Sporobolomyces_roseus_IAM_13481_ 1 1
Microbotryum_violaceum_22 1 1
Wallemia_sebi_v1.0 1 1
Sphaerobolus_stellatus_v1.0 1 1
Piloderma_croceum_F_1598_v1.0 1 1
Serpula_lacrymans_var._lacrymans_S7.9_ 1 1
Coniophora_puteana 1 1
Hydnomerulius_pinastri_v2.0 1 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1 1
Pisolithus_microcarpus_441_v1.0 1 1
Pisolithus_tinctorius_Marx_270_v1.0 1 1
Scleroderma_citrinum_Foug_A_v1.0 1 1
Coprinopsis_cinerea_okayama7_130_v3 2 2
Pleurotus_ostreatus_   (Oyster mushroom)   1 1
Amanita_thiersii_Skay4041_v1.0 1 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1 1
Galerina_marginata_v1.0 1 1
Hebeloma_cylindrosporum_h7_v2.0 1 1
Laccaria_bicolor_S238N-H82_ 1 1
Agaricus_bisporus_var._bisporus_ 1 1
Schizophyllum_commune_ 1 1
Stereum_hirsutum_FP-91666_SS1__v1.0 1 1
Heterobasidion_annosum_ 1 1
Gloeophyllum_trabeumv1.0 1 1
Punctularia_strigosozonata_v1.0 1 1
Sebacina_vermifera_MAFF_305830_v1.0 1 1
Fomitiporia_mediterranea_v1.0 1 1
Tulasnella_calospora_AL13/4D_v1.0 1 1
Postia_placenta_ 1 1
Wolfiporia_cocos_MD-104_SS10__v1.0 1 1
Fomitopsis_pinicolav1.0 1 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1 1
Phanerochaete_chrysosporium_RP-78_2.1 1 1
Dichomitus_squalens 1 1
Trametes_versicolor_v1.0 1 1
Tremella_mesenterica_   (Witches' butter)   1 1
Daldinia_eschscholzii_EC12_v1.0 1 1
Apiospora_montagnei_NRRL_25634_v1.0 1 1
Magnaporthe_poae_ATCC_64411_22 1 1
Magnaporthe_grisea_70-15_ 1 1
Podospora_anserina_ 1 1
Sporotrichum_thermophile_ATCC_42464_ 1 1
Thielavia_terrestris_NRRL_8126_ 1 1
Chaetomium_globosum_CBS_148.51_ 1 1
Neurospora_tetrasperma_ 1 1
Neurospora_discreta_FGSC_8579_ 1 1
Neurospora_crassa_OR74A_ 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1 1
Verticillium_albo-atrum_VaMs.102_ 1 1
Verticillium_dahliae_VdLs.17_ 1 1
Acremonium_alcalophilumv_1.0 1 1
Glomerella_graminicola_22 1 1
Fusarium_graminearum_ 1 1
Nectria_haematococca_mpVI_ 1 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1 1
Fusarium_verticillioides_7600_ 1 1
Trichoderma_asperellum_CBS_433.97_v1.0 1 1
Trichoderma_atroviride_ 1 1
Trichoderma_citrinoviride_v1.0 1 1
Trichoderma_reesei_1.2 1 1
Trichoderma_virens_Gv29-8_ 1 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1 1
Trichoderma_harzianum_CBS_226.95_v1.0 1 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1 1
Botrytis_cinerea_B05.10_ 1 1
Sclerotinia_sclerotiorum_ 1 1
Blumeria_graminis_22 1 1
Didymella_exigua_CBS_183.55_v1.0 1 1
Leptosphaeria_maculans_22 1 1
Setosphaeria_turcica_v1.0 1 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1 1
Cochliobolus_victoriae_FI3_v1.0 1 1
Cochliobolus_carbonum_26-R-13_v1.0 1 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1 1
Alternaria_brassicicola_ 1 1
Cochliobolus_lunatus_m118_v2.0 1 1
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 1 1
Mycosphaerella_graminicola_IPO323_ 1 1
Zasmidium_cellare_ATCC_36951_v1.0 1 1
Dothistroma_septosporum 1 1
Septoria_musiva_v1.0 1 1
Mycosphaerella_fijiensis_CIRAD86_ 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Paracoccidioides_brasiliensis_Pb18_ 1 1
Coccidioides_posadasii_RMSCC_3488_ 1 1
Coccidioides_immitis_RS_ 1 1
Ajellomyces_dermatitidis_SLH14081_ 1 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_equinum_CBS_127.97_ 1 1
Trichophyton_verrucosum_HKI_0517_ 1 1
Arthroderma_benhamiae_CBS_112371_ 1 1
Trichophyton_tonsurans_CBS_112818_ 1 1
Trichophyton_rubrum_CBS_118892_ 1 1
Uncinocarpus_reesii_1704_ 1 1
Aspergillus_zonatus_v1.0 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1 1
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_acidus_v1.0 1 1
Aspergillus_fumigatus_Af293 1 1
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_nidulans_FGSC_A4_ 1 1
Aspergillus_sydowii_v1.0 1 1
Aspergillus_versicolor_v1.0 1 1
Aspergillus_glaucus 1 1
Aspergillus_carbonarius_ITEM_5010_ 1 1
Neosartorya_fischeri_NRRL_181_ 1 1
Aspergillus_terreus_NIH2624_ 1 1
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 1 1
Aspergillus_oryzae_RIB40_ 1 1
Aspergillus_niger_22 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Aspergillus_clavatus_NRRL_1_ 1 1
Penicillium_marneffei_ATCC_18224_ 1 1
Tuber_melanosporum_Mel28_22 1 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1 1
Hansenula_polymorpha_v2.0 1 1
Dekkera_bruxellensis_CBS_2499_v2.0 1 1
Pichia_membranifaciensv1.0 1 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1 1
Candida_dubliniensis_CD36_ 1 1
Candida_tropicalis_MYA-3404_ 1 1
Candida_parapsilosis_ 1 1
Candida_albicans_SC5314 1 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 1 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1 1
Pichia_stipitis_CBS_6054_ 1 1
Candida_guilliermondii_ATCC_6260_ 1 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1 1
Debaromyces_hansenii 1 1
Wickerhamomyces_anomalus 1 1
Pichia_pastoris_GS115_ 1 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1 1
Yarrowia_lipolytica_CLIB122 1 1
Candida_lusitaniae_ATCC_42720_ 1 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1 1
Vanderwaltozyma_polyspora_DSM_70294_ 1 1
Candida_glabrata_CBS138 1 1
Kluyveromyces_thermotolerans_CBS_6340 1 1
Lachancea_kluyveri_ 1 1
Kluyveromyces_waltii 1 1
Ashbya_gossypii_ATCC_10895_ 1 1
Zygosaccharomyces_rouxii_ 1 1
Saccharomyces_mikatae_MIT 1 1
Saccharomyces_paradoxus_MIT 1 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1 1
Saccharomyces_bayanus_MIT 1 1
Kluyveromyces_lactis 1 1
Schizosaccharomyces_cryophilus_OY26_22 1 1
Schizosaccharomyces_octosporus_yFS286_ 1 1
Schizosaccharomyces_japonicus_yFS275_ 1 1
Schizosaccharomyces_pombe   (Fission yeast)   1 1
Catenaria_anguillulae_PL171_v1.0 1 1
Spizellomyces_punctatus_DAOM_BR117_ 1 1
Dictyostelium_discoideum 15 15
Dictyostelium_purpureum_ 15 14
Entamoeba_dispar_1.2 4 4
Entamoeba_invadens_1.2 19 19
Entamoeba_histolytica_1 4 4
Selaginella_moellendorffii_ 4 4
Picea_abies   (Norway spruce)   1 1
Eucalyptus_grandis_v201   (Rose gum)   3 2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   2 2
Gossypium_raimondii_v221 12 9
Citrus_clementina_v165 3 3
Citrus_sinensis_v154   (Sweet orange)   4 4
Thellungiella_halophila_v173 5 4
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   4 3
Capsella_rubella_v183 6 5
Arabidopsis_lyrata_   (Lyrate rockcress)   5 4
Arabidopsis_thaliana_10   (Thale cress)   10 7
Carica_papaya_   (Papaya)   2 2
Medicago_truncatula_   (Barrel medic)   2 2
Phaseolus_vulgaris_v186   (French bean)   3 3
Glycine_max_v109   (Soybean)   4 4
Cucumis_sativus_v122   (Cucumber)   2 2
Fragaria_vesca_   (Wild strawberry)   2 2
Malus_domestica_v196   (Apple)   4 4
Prunus_persica_v139   (Peach)   2 2
Linum_usitatissimum_v200   (Flax)   8 8
Manihot_esculenta_v147   (Cassava)   3 3
Populus_trichocarpa_v156   (Black cottonwood)   5 5
Vitis_vinifera_   (Wine grape)   5 5
Mimulus_guttatus_v140   (Spotted monkey flower)   2 2
Solanum_lycopersicum_v.2.3   (Tomato)   2 2
Solanum_tuberosum_   (Potato)   3 3
Actinidia_chinensis_Hongyang_ 2 2
Aquilegia_coerulea_v195 2 2
Triticum_urartu_22 3 2
Triticum_aestivum_22   (Bread wheat)   8 6
Aegilops_tauschii_22 3 2
Brachypodium_distachyon_   (Stiff brome)   10 6
Oryza_barthii_22   (African wild rice)   4 3
Oryza_meridionalis_22 5 4
Oryza_glumaepatula_22 4 3
Oryza_glaberrima   (African rice)   3 2
Oryza_punctata_22 7 4
Oryza_nivara_22 6 5
Oryza_brachyantha_22   (Malo sina)   3 2
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   3 2
Oryza_sativa_v193   (Rice)   3 2
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   6 4
Panicum_virgatum_v202   (Switchgrass)   6 4
Setaria_italica_v164   (Foxtail millet)   3 2
Zea_mays_subsp._mays_   (Maize)   7 5
Zea_mays_v181   (Maize)   7 5
Sorghum_bicolor_   (Sorghum)   3 2
Musa_balbisiana   (Balbis banana)   5 3
Musa_acuminata_22   (Wild Malaysian banana)   5 3
Amborella_trichopoda_22 3 2
Physcomitrella_patens 3 3
Coccomyxa_subellipsoidea_sp._C-169_v2 3 3
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Chlorella_vulgaris_ 2 2
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Ostreococcus_tauri_ 1 1
Bathycoccus_prasinos_ 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Thecamonas_trahens_ATCC_50062_ 9 9
Bigelowiella_natans_CCMP2755_22 3 2
Cyanophora_paradoxa_ 4 4
Ectocarpus_siliculosus 7 7
Aureococcus_anophagefferens_ 1 1
Albugo_laibachii_22 3 3
Pythium_iwayamai_DAOM_BR242034_22 4 4
Pythium_arrhenomanes_ATCC_12531_22 4 4
Pythium_ultimum_v1.7-2 5 5
Pythium_aphanidermatum_DAOM_BR444_22 4 4
Pythium_irregulare_DAOM_BR486_22 5 5
Pythium_vexans_DAOM_BR484_22 6 6
Phytophthora_ramorum_1.1   (Sudden oak death agent)   3 3
Phytophthora_sojae_1.1 4 4
Phytophthora_infestans_T30-4_ 5 5
Phytophthora_capsici_ 3 3
Hyaloperonospora_arabidopsidis_22 1 1
Phaeodactylum_tricornutumCCAP_1055/1 2 2
Fragilariopsis_cylindrus 1 1
Thalassiosira_pseudonana_CCMP1335 1 1
Paramecium_tetraurelia_ 1 1
Tetrahymena_thermophila_SB210_1_ 1 1
Naegleria_gruberi_ 4 4
Trichomonas_vaginalis_ 2 2
Guillardia_theta_CCMP2712_v1.0_ 3 3
Nostoc_punctiforme_PCC_73102 1 1
Simkania_negevensis_Z 1 1
Novosphingobium_aromaticivorans_DSM_12444 1 1
Legionella_longbeachae_NSW150 1 1

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   198 178
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   95 86
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   51 44
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   66 62
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   88 84
Cryptococcus_neoformans_var._grubii_H99_ 1 1
Cryptococcus_neoformans_B-3501A_ 1 1
Cryptococcus_neoformans_JEC21_ 1 1
Paracoccidioides_brasiliensis_Pb01_ 1 1
Paracoccidioides_brasiliensis_Pb03_ 1 1
Coccidioides_posadasii_str._Silveira_ 1 1
Coccidioides_immitis_RMSCC_3703_ 1 1
Coccidioides_immitis_RMSCC_2394_ 1 1
Coccidioides_immitis_H538.4_ 1 1
Ajellomyces_dermatitidis_ER-3_ 1 1
Histoplasma_capsulatum_H88 1 1
Histoplasma_capsulatum_G186AR 1 1
Aspergillus_fumigatus_A1163_ 1 1
Candida_albicans_WO-1_ 1 1
Saccharomyces_cerevisiae_UC5 1 1
Saccharomyces_cerevisiae_PW5 1 1
Saccharomyces_cerevisiae_CLIB324 1 1
Saccharomyces_cerevisiae_CBS7960 1 1
Saccharomyces_cerevisiae_YJM269 1 1
Saccharomyces_cerevisiae_T7 1 1
Saccharomyces_cerevisiae_FostersB 1 1
Saccharomyces_cerevisiae_FostersO 1 1
Saccharomyces_cerevisiae_LalvinQA23 1 1
Saccharomyces_cerevisiae_AWRI796 1 1
Saccharomyces_cerevisiae_Sigma1278b 1 1
Saccharomyces_cerevisiae_W303 1 1
Saccharomyces_cerevisiae_JAY291 1 1
Saccharomyces_cerevisiae_CLIB215 1 1
Saccharomyces_cerevisiae_YJM789_ 1 1
Saccharomyces_cerevisiae_YJM789 1 1
Saccharomyces_cerevisiae_RM11-1a 1 1
Saccharomyces_cerevisiae_RM11-1a_ 1 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1 1
Schizosaccharomyces_pombe_972h-_ 1 1
Batrachochytrium_dendrobatidis_JEL423_ 1 1
Batrachochytrium_dendrobatidis_JAM81_ 1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   2 2
Hordeum_vulgare_22   (Domesticated barley)   6 4
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   3 2

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   125 115
Pan_troglodytes_69_2.1.4   (Chimpanzee)   114 104
Gorilla_gorilla_69_3.1   (Western gorilla)   123 113
Pongo_abelii_69_2   (Sumatran orangutan)   118 108
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   114 105
Macaca_mulatta_69_1   (Rhesus monkey)   118 106
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   126 115
Otolemur_garnettii_69_3   (Small-eared galago)   120 110
Microcebus_murinus_69_1   (Gray mouse lemur)   95 88
Rattus_norvegicus_69_3.4   (Norway rat)   118 107
Mus_musculus_69_38   (House mouse)   124 114
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   108 99
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   113 104
Cavia_porcellus_69_3   (Domestic guinea pig)   116 106
Oryctolagus_cuniculus_69_2   (Rabbit)   108 99
Ochotona_princeps_69   (American pika)   98 89
Tupaia_belangeri_69   (Northern tree shrew)   84 78
Sus_scrofa_69_10.2   (Pig)   131 117
Bos_taurus_69_3.1   (Cattle)   125 113
Vicugna_pacos_69_1   (Alpaca)   61 56
Tursiops_truncatus_69_1   (Bottlenose dolphin)   112 104
Mustela_putorius_furo_69_1.0   (Domestic ferret)   121 111
Ailuropoda_melanoleuca_69_1   (Giant panda)   119 107
Canis_familiaris_69_3.1   (Dog)   119 109
Felis_catus_69   (Domestic cat)   101 92
Equus_caballus_69_2   (Horse)   115 106
Myotis_lucifugus_69_2.0   (Little brown bat)   117 107
Pteropus_vampyrus_69_1   (Large flying fox)   116 105
Sorex_araneus_69_1   (European shrew)   76 69
Erinaceus_europaeus_69   (Western European hedgehog)   82 74
Procavia_capensis_69_1   (Cape rock hyrax)   98 89
Loxodonta_africana_69_3   (African savanna elephant)   121 111
Echinops_telfairi_69   (Small Madagascar hedgehog)   89 87
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   77 70
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   57 53
Macropus_eugenii_69_1.0   (Tammar wallaby)   102 93
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   112 101
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   118 108
Ornithorhynchus_anatinus_69_5   (Platypus)   87 79
Petromyzon_marinus_69_7.0   (Sea lamprey)   49 46
Meleagris_gallopavo_69_2   (Turkey)   99 88
Gallus_gallus_69_2   (Chicken)   99 86
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   102 91
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   105 93
Anolis_carolinensis_69_2.0   (Green anole)   105 95
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   116 102
Latimeria_chalumnae_69_1   (Coelacanth)   119 108
Gadus_morhua_69_1   (Atlantic cod)   128 115
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   149 135
Takifugu_rubripes_69_4   (Torafugu)   139 121
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   142 127
Oryzias_latipes_69_1   (Japanese medaka)   122 108
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   147 132
Oreochromis_niloticus_69_1.0   (Nile tilapia)   148 132
Danio_rerio_69_9   (Zebrafish)   155 141
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   37 33
Ciona_intestinalis_69   (Vase tunicate)   55 49
Drosophila_melanogaster_69_5   (Fruit fly)   38 33
Caenorhabditis_elegans_69_215   (Roundworm)   70 66
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1 1
Arabidopsis_thaliana_10   (Thale cress)   4 3

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]

Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   466 420
Homo_sapiens__(NCBI_version)   (Human)   224 203
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   123 113
Heliconius_numata__(Incomplete) 5 5
Loa_loa_v3.3_(Request)   (Eye worm)   52 47
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   50 47
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   43 39
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Lotus_japonicus__(Early_assembly) 3 3
Malus_x_domestica_(Duplicate)   (Apple)   4 4
Ricinus_communis__(Early_assembly)   (Castor bean)   2 2
Nicotiana_benthamiana_0.4.4_(Early_draft) 4 4
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   2 2
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   2 2
Phoenix_dactylifera__(Early_draft)   (Date palm)   2 2
Protein_Data_Bank_(all_PDB_sequenc) 810 734
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1719 1719
STRING_v9.0.5_(STRING) 4341 3903
Uniprot_2018_03_genome 41145 36814
NCBI_2017_08_genome 70595 63866
NCBI_viral_sequences_(Viral) 7 7
Protozoadb_2010_08_(Protozoadb) 20 20
UniProt__viral_sequences_(Viral) 52 52
TargetDB__(Targets) 260 245
PDB_chains_(SCOP_1.75)_(PDB) 94 90

Jump to [ Top of page · Domain combinations in groups of genomes · Domain combinations in individual genomes ]