SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Ribosome inactivating proteins (RIP) superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Ribosome inactivating proteins (RIP) domain in that genome.

Complete genomes
Genome     Number   Proteins
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   2 2
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1 1
Sphaerobolus_stellatus_v1.0 2 2
Daldinia_eschscholzii_EC12_v1.0 1 1
Magnaporthe_poae_ATCC_64411_22 1 1
Theobroma_cacao_B97-61/B2_v1   (Cacao)   4 4
Gossypium_raimondii_v221 3 3
Cucumis_sativus_v122   (Cucumber)   1 1
Malus_domestica_v196   (Apple)   9 9
Prunus_persica_v139   (Peach)   2 2
Manihot_esculenta_v147   (Cassava)   4 4
Populus_trichocarpa_v156   (Black cottonwood)   3 3
Triticum_urartu_22 25 25
Triticum_aestivum_22   (Bread wheat)   17 17
Aegilops_tauschii_22 27 27
Brachypodium_distachyon_   (Stiff brome)   6 6
Oryza_barthii_22   (African wild rice)   38 36
Oryza_meridionalis_22 31 30
Oryza_glumaepatula_22 34 32
Oryza_glaberrima   (African rice)   21 21
Oryza_punctata_22 33 30
Oryza_nivara_22 36 33
Oryza_brachyantha_22   (Malo sina)   13 13
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   39 39
Oryza_sativa_v193   (Rice)   39 39
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   4 4
Panicum_virgatum_v202   (Switchgrass)   60 60
Setaria_italica_v164   (Foxtail millet)   15 15
Zea_mays_subsp._mays_   (Maize)   10 10
Zea_mays_v181   (Maize)   14 14
Sorghum_bicolor_   (Sorghum)   10 10
Streptomyces_coelicolor_A3(2) 1 1
Streptomyces_scabiei_87.22 2 2
Melioribacter_roseus_P3M 1 1
Flavobacterium_columnare_ATCC_49512 1 1
Burkholderia_sp._CCGE1002 1 1
Xanthomonas_axonopodis_pv._citri_str._306 1 1
Shigella_dysenteriae_Sd197 1 1

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Strains
Genome     Number   Proteins
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   6 6
Hordeum_vulgare_22   (Domesticated barley)   18 18
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   43 42
Oscillatoria_nigro-viridis_PCC_7112 1 1
Calothrix_parietina_Calothrix_sp._PCC_6303 1 1
Corynebacterium_ulcerans_809 1 1
Corynebacterium_diphtheriae_BH8 1 1
Corynebacterium_diphtheriae_INCA_402 1 1
Corynebacterium_diphtheriae_VA01 1 1
Corynebacterium_diphtheriae_HC04 1 1
Corynebacterium_diphtheriae_HC03 1 1
Corynebacterium_diphtheriae_HC02 1 1
Corynebacterium_diphtheriae_HC01 1 1
Corynebacterium_diphtheriae_241 1 1
Corynebacterium_diphtheriae_CDCE_8392 1 1
Corynebacterium_diphtheriae_PW8 1 1
Corynebacterium_diphtheriae_C7_(beta) 1 1
Corynebacterium_diphtheriae_31A 1 1
Burkholderia_ambifaria_MC40-6 1 1
Burkholderia_cenocepacia_J2315 1 1
Xanthomonas_citri_subsp._citri_Aw12879 1 1
Xanthomonas_axonopodis_Xac29-1 1 1
Shigella_dysenteriae_1617 1 1
Escherichia_coli_O104:H4_str._2009EL-2050 1 1
Escherichia_coli_O104:H4_str._2009EL-2071 1 1
Escherichia_coli_O104:H4_str._2011C-3493 1 1
Escherichia_coli_Xuzhou21 2 2
Escherichia_coli_O103:H2_str._12009 2 2
Escherichia_coli_O26:H11_str._11368 1 1
Escherichia_coli_O111:H-_str._11128 2 2
Escherichia_coli_O157:H7_str._TW14359 2 2
Escherichia_coli_O157:H7_str._EC4115 2 2
Escherichia_coli_O157:H7_str._Sakai 2 2
Escherichia_coli_O157:H7_str._EDL933 2 2

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Others
Genome     Number   Proteins
Malus_x_domestica_(Duplicate)   (Apple)   9 9
Ricinus_communis__(Early_assembly)   (Castor bean)   20 20
NCBI_plasmid_sequences_(Plasmids) 1 1
NCBI_viral_sequences_(Viral) 13 13
PDB_chains_(SCOP_1.75)_(PDB) 45 45
UniProt__viral_sequences_(Viral) 51 51
STRING_v9.0.5_(STRING) 115 114
Protein_Data_Bank_(all_PDB_sequenc) 301 299
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 1030 1030
Uniprot_2018_03_genome 2164 2112
NCBI_2017_08_genome 3398 3393

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