SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for SRCR-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a SRCR-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   303 112
Pan_troglodytes_76_2.1.4   (Chimpanzee)   84 26
Gorilla_gorilla_76_3.1   (Western gorilla)   124 36
Pongo_abelii_76_2   (Sumatran orangutan)   78 25
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   80 28
Papio_anubis_76   (Olive baboon)   76 27
Macaca_mulatta_76_1   (Rhesus monkey)   140 45
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   155 59
Otolemur_garnettii_76_3   (Small-eared galago)   98 30
Microcebus_murinus_76_1   (Gray mouse lemur)   67 24
Rattus_norvegicus_76_5.0   (Norway rat)   101 34
Mus_musculus_76_38   (House mouse)   147 59
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   47 22
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   157 36
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   88 29
Cavia_porcellus_76_3   (Domestic guinea pig)   99 34
Oryctolagus_cuniculus_76_2   (Rabbit)   68 29
Ochotona_princeps_76   (American pika)   51 22
Tupaia_belangeri_76   (Northern tree shrew)   61 22
Sus_scrofa_76_10.2   (Pig)   102 37
Bos_taurus_76_3.1   (Cattle)   214 52
Ovis_aries_76_3.1   (Sheep)   180 60
Vicugna_pacos_76_1   (Alpaca)   25 10
Tursiops_truncatus_76_1   (Bottlenose dolphin)   61 23
Mustela_putorius_furo_76_1.0   (Domestic ferret)   78 28
Ailuropoda_melanoleuca_76_1   (Giant panda)   74 28
Canis_familiaris_76_3.1   (Dog)   136 44
Felis_catus_76_6.2   (Domestic cat)   82 27
Equus_caballus_76_2   (Horse)   114 37
Myotis_lucifugus_76_2.0   (Little brown bat)   72 27
Pteropus_vampyrus_76_1   (Large flying fox)   67 27
Sorex_araneus_76_1   (European shrew)   38 14
Erinaceus_europaeus_76   (Western European hedgehog)   31 13
Procavia_capensis_76_1   (Cape rock hyrax)   48 20
Loxodonta_africana_76_3   (African savanna elephant)   104 35
Echinops_telfairi_76   (Small Madagascar hedgehog)   55 19
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   177 47
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   28 14
Macropus_eugenii_76_1.0   (Tammar wallaby)   52 22
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   106 40
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   80 34
Ornithorhynchus_anatinus_76_5   (Platypus)   145 48
Saccoglossus_kowalevskii_v3.0 77 46
Petromyzon_marinus_76_7.0   (Sea lamprey)   101 34
Meleagris_gallopavo_76_2   (Turkey)   138 41
Gallus_gallus_76_4   (Chicken)   128 32
Anas_platyrhynchos_76_1.0   (Mallard)   96 33
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   85 26
Ficedula_albicollis_76_1.0   (Collared flycatcher)   80 29
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   155 39
Anolis_carolinensis_76_2.0   (Green anole)   100 29
Xenopus_laevis_   (African clawed frog)   29 16
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   131 46
Latimeria_chalumnae_76_1   (Coelacanth)   295 62
Lepisosteus_oculatus_76   (Spotted gar)   246 67
Gadus_morhua_76_1   (Atlantic cod)   89 30
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   69 25
Takifugu_rubripes_76_4   (Torafugu)   160 64
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   90 34
Oryzias_latipes_76_1   (Japanese medaka)   65 26
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   54 21
Poecilia_formosa_76   (Amazon molly)   101 29
Oreochromis_niloticus_76_1.0   (Nile tilapia)   220 55
Astyanax_mexicanus_76   (Mexican tetra)   137 47
Danio_rerio_76_9   (Zebrafish)   241 67
Oikopleura_dioica 15 9
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   23 10
Ciona_intestinalis_76   (Vase tunicate)   11 5
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1328 427
Adineta_vaga 4 4
Octopus_bimaculoides_280 88 41
Crassostrea_gigas_22   (Pacific oyster)   241 69
Lottia_gigantea_   (Owl limpet)   116 22
Helobdella_robusta_ 27 24
Capitella_sp._I_ 110 67
Danaus_plexippus_OGS1.0   (Monarch butterfly)   8 5
Heliconius_melpomene_   (Postman butterfly)   6 4
Bombyx_mori_   (Domestic silkworm)   6 4
Nasonia_vitripennis_   (Jewel wasp)   10 5
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   9 7
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   10 5
Linepithema_humile_v1.1   (Argentine ant)   10 5
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   12 7
Solenopsis_invicta_v.2.2.3   (Red fire ant)   10 5
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   8 3
Atta_cephalotes_v1.1 7 4
Camponotus_floridanus_v3.3   (Florida carpenter ant)   9 4
Lucilia_cuprina   (Australian sheep blowfly)   5 3
Drosophila_grimshawi_1.3 8 4
Drosophila_willistoni_1.3 8 4
Drosophila_pseudoobscura_2.13 8 4
Drosophila_persimilis_1.3 7 4
Drosophila_suzukii 9 5
Drosophila_yakuba_1.3 8 4
Drosophila_simulans_1.3 8 4
Drosophila_sechellia_1.3 8 4
Drosophila_melanogaster_76_5   (Fruit fly)   20 9
Drosophila_erecta_1.3 8 4
Drosophila_ananassae_1.3 8 4
Drosophila_virilis_1.2 8 4
Drosophila_mojavensis_1.3 9 5
Megaselia_scalaris_22 3 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   6 3
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   9 5
Anopheles_darlingi_22   (American malaria mosquito)   7 4
Anopheles_gambiae_49_3j   (African malaria mosquito)   10 5
Tribolium_castaneum_3.0   (Red flour beetle)   8 4
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   10 7
Acyrthosiphon_pisum_   (Pea aphid)   9 5
Rhodnius_prolixus_22 7 3
Daphnia_pulex_   (Common water flea)   12 7
Strigamia_maritima_22 17 10
Sarcoptes_scabiei 2 1
Tetranychus_urticae_   (Two-spotted spider mite)   5 3
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   3 3
Pristionchus_pacificus_ 3 2
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 3 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   1 1
Caenorhabditis_japonica_ 3 2
Caenorhabditis_brenneri_ 4 2
Caenorhabditis_remanei_ 5 3
Caenorhabditis_elegans_76_235   (Roundworm)   4 2
Caenorhabditis_briggsae_2 4 2
Trichinella_spiralis_22 6 3
Hymenolepis_microstoma_ 4 2
Echinococcus_multilocularis_ 2 1
Echinococcus_granulosus_ 1 1
Taenia_solium_   (Pork tapeworm)   3 2
Schistosoma_mansoni_ 7 5
Mnemiopsis_leidyi   (Sea walnut)   152 70
Acropora_digitifera_v1.0 148 67
Nematostella_vectensis_1.0   (Starlet sea anemone)   133 67
Hydra_vulgaris 11 4
Amphimedon_queenslandica 1336 299
Trichoplax_adhaerens_ 142 46
Chlorella_variabilis_sp._NC64A_ 67 18
Volvox_carteri_f._nagariensis_ 77 34
Volvox_carteri_v199 83 34
Chlamydomonas_reinhardtii_4.0 90 35
Bigelowiella_natans_CCMP2755_22 14 11
Cyanophora_paradoxa_ 1 1
Aureococcus_anophagefferens_ 13 6
Cryptosporidium_hominis 2 1
Cryptosporidium_muris 2 1
Cryptosporidium_parvum_Iowa_II 2 1
Neospora_caninum 2 1
Toxoplasma_gondii_VEG 4 2
Toxoplasma_gondii_ME49 4 2
Toxoplasma_gondii_GT1 2 1
Babesia_bovis_T2Bo_ 4 2
Theileria_parva__ 2 1
Theileria_annulata 2 1
Plasmodium_falciparum_3D7_ 2 1
Plasmodium_vivax_SaI-1_7.0 2 1
Plasmodium_knowlesi_strain_H_ 2 1
Plasmodium_yoelii_ssp._yoelii_1_ 2 1
Plasmodium_chabaudi_ 2 1
Plasmodium_berghei_ANKA_ 2 1
Symbiodinium_minutum_clade_B1_v1.2 17 7
Guillardia_theta_CCMP2712_v1.0_ 24 14
Emiliania_huxleyi_CCMP1516_ 2 2

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   123 39
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   14 7
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   10 5
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   3 3
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   4 2
Neospora_caninum_Nc-Liverpool_6.2 2 1
Plasmodium_falciparum_HB3_ 2 1
Plasmodium_falciparum_Dd2_ 2 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   91 27
Pan_troglodytes_69_2.1.4   (Chimpanzee)   83 25
Gorilla_gorilla_69_3.1   (Western gorilla)   98 28
Pongo_abelii_69_2   (Sumatran orangutan)   78 25
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   75 26
Macaca_mulatta_69_1   (Rhesus monkey)   76 26
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   95 29
Otolemur_garnettii_69_3   (Small-eared galago)   98 30
Microcebus_murinus_69_1   (Gray mouse lemur)   67 24
Rattus_norvegicus_69_3.4   (Norway rat)   78 30
Mus_musculus_69_38   (House mouse)   86 30
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   47 22
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   128 30
Cavia_porcellus_69_3   (Domestic guinea pig)   97 32
Oryctolagus_cuniculus_69_2   (Rabbit)   67 28
Ochotona_princeps_69   (American pika)   51 22
Tupaia_belangeri_69   (Northern tree shrew)   61 22
Sus_scrofa_69_10.2   (Pig)   74 26
Bos_taurus_69_3.1   (Cattle)   163 41
Vicugna_pacos_69_1   (Alpaca)   25 10
Tursiops_truncatus_69_1   (Bottlenose dolphin)   61 23
Mustela_putorius_furo_69_1.0   (Domestic ferret)   78 28
Ailuropoda_melanoleuca_69_1   (Giant panda)   73 27
Canis_familiaris_69_3.1   (Dog)   90 30
Felis_catus_69   (Domestic cat)   60 23
Equus_caballus_69_2   (Horse)   85 28
Myotis_lucifugus_69_2.0   (Little brown bat)   71 26
Pteropus_vampyrus_69_1   (Large flying fox)   67 27
Sorex_araneus_69_1   (European shrew)   38 14
Erinaceus_europaeus_69   (Western European hedgehog)   31 13
Procavia_capensis_69_1   (Cape rock hyrax)   48 20
Loxodonta_africana_69_3   (African savanna elephant)   90 30
Echinops_telfairi_69   (Small Madagascar hedgehog)   55 19
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   40 17
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   28 14
Macropus_eugenii_69_1.0   (Tammar wallaby)   52 22
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   80 29
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   80 34
Ornithorhynchus_anatinus_69_5   (Platypus)   119 42
Petromyzon_marinus_69_7.0   (Sea lamprey)   77 25
Meleagris_gallopavo_69_2   (Turkey)   117 34
Gallus_gallus_69_2   (Chicken)   139 33
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   81 25
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   138 33
Anolis_carolinensis_69_2.0   (Green anole)   97 26
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   97 33
Latimeria_chalumnae_69_1   (Coelacanth)   267 50
Gadus_morhua_69_1   (Atlantic cod)   68 23
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   60 22
Takifugu_rubripes_69_4   (Torafugu)   59 22
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   71 25
Oryzias_latipes_69_1   (Japanese medaka)   57 20
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   54 21
Oreochromis_niloticus_69_1.0   (Nile tilapia)   193 45
Danio_rerio_69_9   (Zebrafish)   189 48
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   10 5
Ciona_intestinalis_69   (Vase tunicate)   11 5
Drosophila_melanogaster_69_5   (Fruit fly)   8 4
Caenorhabditis_elegans_69_215   (Roundworm)   4 2

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   298 109
Homo_sapiens__(NCBI_version)   (Human)   149 42
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   82 29
Loa_loa_v3.3_(Request)   (Eye worm)   3 2
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3 3
Protozoadb_2010_08_(Protozoadb) 40 21
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 50 50
STRING_v9.0.5_(STRING) 4381 1565
Uniprot_2018_03_genome 23812 8875
NCBI_2017_08_genome 43750 14409
TargetDB__(Targets) 81 35
PDB_chains_(SCOP_1.75)_(PDB) 3 3
Protein_Data_Bank_(all_PDB_sequenc) 31 27

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