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Domain combinations for Fibrinogen C-terminal domain-like superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Fibrinogen C-terminal domain-like domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   101 101
Pan_troglodytes_76_2.1.4   (Chimpanzee)   30 30
Gorilla_gorilla_76_3.1   (Western gorilla)   37 37
Pongo_abelii_76_2   (Sumatran orangutan)   34 34
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   29 29
Papio_anubis_76   (Olive baboon)   33 32
Macaca_mulatta_76_1   (Rhesus monkey)   58 58
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   69 69
Otolemur_garnettii_76_3   (Small-eared galago)   32 32
Microcebus_murinus_76_1   (Gray mouse lemur)   35 33
Rattus_norvegicus_76_5.0   (Norway rat)   32 32
Mus_musculus_76_38   (House mouse)   40 39
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   28 26
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   32 31
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   29 27
Cavia_porcellus_76_3   (Domestic guinea pig)   37 37
Oryctolagus_cuniculus_76_2   (Rabbit)   36 36
Ochotona_princeps_76   (American pika)   30 27
Tupaia_belangeri_76   (Northern tree shrew)   33 27
Sus_scrofa_76_10.2   (Pig)   30 30
Bos_taurus_76_3.1   (Cattle)   35 35
Ovis_aries_76_3.1   (Sheep)   32 32
Vicugna_pacos_76_1   (Alpaca)   17 16
Tursiops_truncatus_76_1   (Bottlenose dolphin)   30 28
Mustela_putorius_furo_76_1.0   (Domestic ferret)   31 31
Ailuropoda_melanoleuca_76_1   (Giant panda)   30 30
Canis_familiaris_76_3.1   (Dog)   36 36
Felis_catus_76_6.2   (Domestic cat)   26 26
Equus_caballus_76_2   (Horse)   33 33
Myotis_lucifugus_76_2.0   (Little brown bat)   25 25
Pteropus_vampyrus_76_1   (Large flying fox)   28 26
Sorex_araneus_76_1   (European shrew)   22 21
Erinaceus_europaeus_76   (Western European hedgehog)   33 30
Procavia_capensis_76_1   (Cape rock hyrax)   27 26
Loxodonta_africana_76_3   (African savanna elephant)   38 37
Echinops_telfairi_76   (Small Madagascar hedgehog)   29 24
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   31 31
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   27 26
Macropus_eugenii_76_1.0   (Tammar wallaby)   35 29
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   32 32
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   34 34
Ornithorhynchus_anatinus_76_5   (Platypus)   26 26
Saccoglossus_kowalevskii_v3.0 67 65
Petromyzon_marinus_76_7.0   (Sea lamprey)   25 25
Meleagris_gallopavo_76_2   (Turkey)   41 41
Gallus_gallus_76_4   (Chicken)   33 33
Anas_platyrhynchos_76_1.0   (Mallard)   30 30
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   28 28
Ficedula_albicollis_76_1.0   (Collared flycatcher)   28 28
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   49 48
Anolis_carolinensis_76_2.0   (Green anole)   37 37
Xenopus_laevis_   (African clawed frog)   89 89
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   81 81
Latimeria_chalumnae_76_1   (Coelacanth)   42 41
Lepisosteus_oculatus_76   (Spotted gar)   44 44
Gadus_morhua_76_1   (Atlantic cod)   50 49
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   56 56
Takifugu_rubripes_76_4   (Torafugu)   153 153
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   58 58
Oryzias_latipes_76_1   (Japanese medaka)   54 54
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   49 49
Poecilia_formosa_76   (Amazon molly)   52 52
Oreochromis_niloticus_76_1.0   (Nile tilapia)   66 66
Astyanax_mexicanus_76   (Mexican tetra)   48 47
Danio_rerio_76_9   (Zebrafish)   87 87
Oikopleura_dioica 12 10
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   112 106
Ciona_intestinalis_76   (Vase tunicate)   55 55
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   66 62
Adineta_vaga 14 14
Octopus_bimaculoides_280 15 15
Crassostrea_gigas_22   (Pacific oyster)   228 199
Lottia_gigantea_   (Owl limpet)   72 72
Helobdella_robusta_ 119 117
Capitella_sp._I_ 142 142
Danaus_plexippus_OGS1.0   (Monarch butterfly)   3 3
Heliconius_melpomene_   (Postman butterfly)   3 3
Bombyx_mori_   (Domestic silkworm)   3 3
Nasonia_vitripennis_   (Jewel wasp)   1 1
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   3 3
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   2 2
Linepithema_humile_v1.1   (Argentine ant)   3 3
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   2 2
Solenopsis_invicta_v.2.2.3   (Red fire ant)   2 2
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   2 2
Atta_cephalotes_v1.1 2 2
Camponotus_floridanus_v3.3   (Florida carpenter ant)   2 2
Lucilia_cuprina   (Australian sheep blowfly)   22 19
Drosophila_grimshawi_1.3 45 43
Drosophila_willistoni_1.3 38 35
Drosophila_pseudoobscura_2.13 30 30
Drosophila_persimilis_1.3 29 28
Drosophila_suzukii 45 41
Drosophila_yakuba_1.3 14 14
Drosophila_simulans_1.3 15 15
Drosophila_sechellia_1.3 15 15
Drosophila_melanogaster_76_5   (Fruit fly)   24 24
Drosophila_erecta_1.3 16 16
Drosophila_ananassae_1.3 44 43
Drosophila_virilis_1.2 34 34
Drosophila_mojavensis_1.3 22 22
Megaselia_scalaris_22 2 2
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   35 35
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   99 93
Anopheles_darlingi_22   (American malaria mosquito)   37 36
Anopheles_gambiae_49_3j   (African malaria mosquito)   49 49
Tribolium_castaneum_3.0   (Red flour beetle)   8 8
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   2 2
Acyrthosiphon_pisum_   (Pea aphid)   3 3
Rhodnius_prolixus_22 2 2
Daphnia_pulex_   (Common water flea)   42 40
Strigamia_maritima_22 19 19
Sarcoptes_scabiei 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   2 2
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   27 27
Pristionchus_pacificus_ 3 3
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 2 2
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   3 3
Caenorhabditis_japonica_ 5 5
Caenorhabditis_brenneri_ 8 8
Caenorhabditis_remanei_ 8 8
Caenorhabditis_elegans_76_235   (Roundworm)   8 8
Caenorhabditis_briggsae_2 5 5
Trichinella_spiralis_22 3 3
Thelohanellus_kitauei 1 1
Acropora_digitifera_v1.0 194 172
Nematostella_vectensis_1.0   (Starlet sea anemone)   147 142
Hydra_vulgaris 20 17
Amphimedon_queenslandica 271 257
Trichoplax_adhaerens_ 15 15
Proterospongia_sp._ATCC_50818_ 7 7
Monosiga_brevicollis_ 19 9
Bathycoccus_prasinos_ 1 1
Micromonas_pusilla_CCMP1545_v3.0 1 1
Bigelowiella_natans_CCMP2755_22 1 1
Cyanophora_paradoxa_ 1 1
Albugo_laibachii_22 1 1
Pythium_iwayamai_DAOM_BR242034_22 1 1
Phytophthora_infestans_T30-4_ 1 1
Cryptosporidium_hominis 2 2
Cryptosporidium_muris 2 2
Cryptosporidium_parvum_Iowa_II 2 2
Babesia_bovis_T2Bo_ 4 4
Theileria_parva__ 2 2
Theileria_annulata 2 2
Plasmodium_falciparum_3D7_ 2 2
Plasmodium_vivax_SaI-1_7.0 2 2
Plasmodium_knowlesi_strain_H_ 2 2
Plasmodium_yoelii_ssp._yoelii_1_ 2 2
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 2 2
Naegleria_gruberi_ 14 14
Guillardia_theta_CCMP2712_v1.0_ 2 2
Ilumatobacter_coccineus 1 1
Corynebacterium_aurimucosum_ATCC_700975 1 1
Arthrobacter_arilaitensis_Re117 1 1
Rothia_mucilaginosa_DY-18 4 3
Rothia_dentocariosa_ATCC_17931 1 1
Turneriella_parva_DSM_21527 1 1
Bacteriovorax_marinus_SJ 6 2
Bdellovibrio_bacteriovorus_HD100 4 2
Haliangium_ochraceum_DSM_14365 9 9
Sorangium_cellulosum_'So_ce_56' 1 1
Anaeromyxobacter_sp._Fw109-5 1 1
Herminiimonas_arsenicoxydans 1 1
Marinomonas_mediterranea_MMB-1 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   113 112
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   23 23
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   49 49
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   6 6
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   7 7
Plasmodium_falciparum_HB3_ 2 2
Plasmodium_falciparum_Dd2_ 2 2
Actinomyces_odontolyticus_ATCC_17982 2 2
Nonlabens_dokdonensis_DSW-6 1 1
Bdellovibrio_bacteriovorus_str._Tiberius 4 2
Sorangium_cellulosum_So0157-2 2 1

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   37 37
Pan_troglodytes_69_2.1.4   (Chimpanzee)   30 30
Gorilla_gorilla_69_3.1   (Western gorilla)   31 31
Pongo_abelii_69_2   (Sumatran orangutan)   32 32
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   29 29
Macaca_mulatta_69_1   (Rhesus monkey)   32 32
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   28 28
Otolemur_garnettii_69_3   (Small-eared galago)   32 32
Microcebus_murinus_69_1   (Gray mouse lemur)   35 33
Rattus_norvegicus_69_3.4   (Norway rat)   29 29
Mus_musculus_69_38   (House mouse)   33 32
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   28 26
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   29 28
Cavia_porcellus_69_3   (Domestic guinea pig)   32 32
Oryctolagus_cuniculus_69_2   (Rabbit)   31 30
Ochotona_princeps_69   (American pika)   30 27
Tupaia_belangeri_69   (Northern tree shrew)   33 27
Sus_scrofa_69_10.2   (Pig)   29 29
Bos_taurus_69_3.1   (Cattle)   28 28
Vicugna_pacos_69_1   (Alpaca)   17 16
Tursiops_truncatus_69_1   (Bottlenose dolphin)   30 28
Mustela_putorius_furo_69_1.0   (Domestic ferret)   31 31
Ailuropoda_melanoleuca_69_1   (Giant panda)   30 30
Canis_familiaris_69_3.1   (Dog)   27 27
Felis_catus_69   (Domestic cat)   25 24
Equus_caballus_69_2   (Horse)   30 30
Myotis_lucifugus_69_2.0   (Little brown bat)   24 24
Pteropus_vampyrus_69_1   (Large flying fox)   28 26
Sorex_araneus_69_1   (European shrew)   22 21
Erinaceus_europaeus_69   (Western European hedgehog)   33 30
Procavia_capensis_69_1   (Cape rock hyrax)   27 26
Loxodonta_africana_69_3   (African savanna elephant)   31 30
Echinops_telfairi_69   (Small Madagascar hedgehog)   29 24
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   29 23
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   27 26
Macropus_eugenii_69_1.0   (Tammar wallaby)   35 29
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   26 26
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   32 32
Ornithorhynchus_anatinus_69_5   (Platypus)   23 23
Petromyzon_marinus_69_7.0   (Sea lamprey)   24 24
Meleagris_gallopavo_69_2   (Turkey)   28 28
Gallus_gallus_69_2   (Chicken)   32 30
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   27 27
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   43 42
Anolis_carolinensis_69_2.0   (Green anole)   34 34
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   61 61
Latimeria_chalumnae_69_1   (Coelacanth)   37 36
Gadus_morhua_69_1   (Atlantic cod)   37 36
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   45 45
Takifugu_rubripes_69_4   (Torafugu)   42 42
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   40 40
Oryzias_latipes_69_1   (Japanese medaka)   44 44
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   48 48
Oreochromis_niloticus_69_1.0   (Nile tilapia)   50 50
Danio_rerio_69_9   (Zebrafish)   57 57
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   79 73
Ciona_intestinalis_69   (Vase tunicate)   49 49
Drosophila_melanogaster_69_5   (Fruit fly)   14 14
Caenorhabditis_elegans_69_215   (Roundworm)   5 5

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   100 100
Homo_sapiens__(NCBI_version)   (Human)   47 47
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   32 31
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   5 5
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3 3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
NCBI_plasmid_sequences_(Plasmids) 1 1
Uniprot_2018_03_genome 16498 15843
NCBI_2017_08_genome 18019 17713
NCBI_viral_sequences_(Viral) 14 14
UniProt__viral_sequences_(Viral) 2 2
Protein_Data_Bank_(all_PDB_sequenc) 307 307
Protozoadb_2010_08_(Protozoadb) 36 36
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 994 994
TargetDB__(Targets) 20 20
STRING_v9.0.5_(STRING) 2190 2119
PDB_chains_(SCOP_1.75)_(PDB) 21 21

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