SUPERFAMILY 1.75 HMM library and genome assignments server

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Domain combinations for Prim-pol domain superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Prim-pol domain domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   4 4
Pan_troglodytes_76_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_76_3.1   (Western gorilla)   1 1
Pongo_abelii_76_2   (Sumatran orangutan)   1 1
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   1 1
Papio_anubis_76   (Olive baboon)   1 1
Macaca_mulatta_76_1   (Rhesus monkey)   2 2
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1 1
Microcebus_murinus_76_1   (Gray mouse lemur)   1 1
Rattus_norvegicus_76_5.0   (Norway rat)   1 1
Mus_musculus_76_38   (House mouse)   2 2
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   1 1
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   1 1
Cavia_porcellus_76_3   (Domestic guinea pig)   1 1
Oryctolagus_cuniculus_76_2   (Rabbit)   1 1
Ochotona_princeps_76   (American pika)   1 1
Tupaia_belangeri_76   (Northern tree shrew)   2 1
Sus_scrofa_76_10.2   (Pig)   2 2
Bos_taurus_76_3.1   (Cattle)   1 1
Ovis_aries_76_3.1   (Sheep)   1 1
Vicugna_pacos_76_1   (Alpaca)   1 1
Tursiops_truncatus_76_1   (Bottlenose dolphin)   1 1
Mustela_putorius_furo_76_1.0   (Domestic ferret)   1 1
Ailuropoda_melanoleuca_76_1   (Giant panda)   1 1
Canis_familiaris_76_3.1   (Dog)   1 1
Felis_catus_76_6.2   (Domestic cat)   1 1
Equus_caballus_76_2   (Horse)   2 2
Myotis_lucifugus_76_2.0   (Little brown bat)   1 1
Pteropus_vampyrus_76_1   (Large flying fox)   1 1
Sorex_araneus_76_1   (European shrew)   1 1
Erinaceus_europaeus_76   (Western European hedgehog)   1 1
Procavia_capensis_76_1   (Cape rock hyrax)   1 1
Loxodonta_africana_76_3   (African savanna elephant)   1 1
Echinops_telfairi_76   (Small Madagascar hedgehog)   1 1
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   1 1
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   1 1
Macropus_eugenii_76_1.0   (Tammar wallaby)   3 1
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   1 1
Ornithorhynchus_anatinus_76_5   (Platypus)   1 1
Saccoglossus_kowalevskii_v3.0 1 1
Petromyzon_marinus_76_7.0   (Sea lamprey)   1 1
Meleagris_gallopavo_76_2   (Turkey)   1 1
Anas_platyrhynchos_76_1.0   (Mallard)   1 1
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   1 1
Ficedula_albicollis_76_1.0   (Collared flycatcher)   1 1
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   2 2
Anolis_carolinensis_76_2.0   (Green anole)   1 1
Xenopus_laevis_   (African clawed frog)   2 2
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   2 2
Latimeria_chalumnae_76_1   (Coelacanth)   1 1
Lepisosteus_oculatus_76   (Spotted gar)   1 1
Gadus_morhua_76_1   (Atlantic cod)   1 1
Takifugu_rubripes_76_4   (Torafugu)   1 1
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   2 2
Oryzias_latipes_76_1   (Japanese medaka)   1 1
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   1 1
Poecilia_formosa_76   (Amazon molly)   1 1
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1 1
Astyanax_mexicanus_76   (Mexican tetra)   1 1
Danio_rerio_76_9   (Zebrafish)   1 1
Oikopleura_dioica 1 1
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_76   (Vase tunicate)   1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   1 1
Adineta_vaga 9 8
Octopus_bimaculoides_280 1 1
Crassostrea_gigas_22   (Pacific oyster)   2 2
Helobdella_robusta_ 1 1
Capitella_sp._I_ 1 1
Danaus_plexippus_OGS1.0   (Monarch butterfly)   1 1
Heliconius_melpomene_   (Postman butterfly)   1 1
Bombyx_mori_   (Domestic silkworm)   1 1
Nasonia_vitripennis_   (Jewel wasp)   2 2
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   2 2
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   1 1
Linepithema_humile_v1.1   (Argentine ant)   1 1
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   1 1
Solenopsis_invicta_v.2.2.3   (Red fire ant)   1 1
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   1 1
Atta_cephalotes_v1.1 1 1
Camponotus_floridanus_v3.3   (Florida carpenter ant)   1 1
Lucilia_cuprina   (Australian sheep blowfly)   1 1
Drosophila_grimshawi_1.3 1 1
Drosophila_willistoni_1.3 1 1
Drosophila_pseudoobscura_2.13 1 1
Drosophila_persimilis_1.3 1 1
Drosophila_suzukii 1 1
Drosophila_yakuba_1.3 1 1
Drosophila_simulans_1.3 1 1
Drosophila_sechellia_1.3 1 1
Drosophila_melanogaster_76_5   (Fruit fly)   1 1
Drosophila_erecta_1.3 1 1
Drosophila_ananassae_1.3 1 1
Drosophila_virilis_1.2 1 1
Drosophila_mojavensis_1.3 1 1
Megaselia_scalaris_22 1 1
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   1 1
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   1 1
Anopheles_gambiae_49_3j   (African malaria mosquito)   1 1
Tribolium_castaneum_3.0   (Red flour beetle)   1 1
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   1 1
Acyrthosiphon_pisum_   (Pea aphid)   1 1
Rhodnius_prolixus_22 1 1
Daphnia_pulex_   (Common water flea)   1 1
Strigamia_maritima_22 1 1
Sarcoptes_scabiei 1 1
Tetranychus_urticae_   (Two-spotted spider mite)   1 1
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   1 1
Pristionchus_pacificus_ 1 1
Meloidogyne_hapla_ 1 1
Onchocerca_volvulus_22 1 1
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   4 4
Caenorhabditis_japonica_ 2 2
Caenorhabditis_brenneri_ 1 1
Caenorhabditis_remanei_ 1 1
Caenorhabditis_elegans_76_235   (Roundworm)   3 3
Caenorhabditis_briggsae_2 1 1
Trichinella_spiralis_22 1 1
Hymenolepis_microstoma_ 1 1
Echinococcus_multilocularis_ 1 1
Echinococcus_granulosus_ 1 1
Taenia_solium_   (Pork tapeworm)   1 1
Schistosoma_mansoni_ 1 1
Mnemiopsis_leidyi   (Sea walnut)   1 1
Acropora_digitifera_v1.0 5 5
Nematostella_vectensis_1.0   (Starlet sea anemone)   1 1
Hydra_vulgaris 2 2
Amphimedon_queenslandica 3 3
Trichoplax_adhaerens_ 1 1
Proterospongia_sp._ATCC_50818_ 2 1
Monosiga_brevicollis_ 1 1
Sphaeroforma_arctica_JP610_ 1 1
Capsaspora_owczarzaki_ATCC_30864_ 1 1
Conidiobolus_coronatus_NRRL28638_v1.0 1 1
Mortierella_verticillata_NRRL_6337_ 1 1
Phycomyces_blakesleeanus_ 1 1
Rhizopus_oryzae_RA_99-880_ 1 1
Mucor_circinelloides_ 1 1
Rhizomucor_miehei_CAU432_ 1 1
Malassezia_globosa_CBS_7966_ 2 2
Sporisorium_reilianum_22 1 1
Ustilago_maydis_ 1 1
Mixia_osmundae_IAM_14324_v1.0 1 1
Cronartium_quercuum_f._sp._fusiforme_G11_v1.0 1 1
Puccinia_graminis_f._sp._tritici_CRL_75-36-700-3_ 1 1
Melampsora_laricis-populina_ 5 5
Rhodotorula_graminis_WP1_v1.0 1 1
Microbotryum_violaceum_22 1 1
Wallemia_sebi_v1.0 1 1
Sphaerobolus_stellatus_v1.0 1 1
Piloderma_croceum_F_1598_v1.0 2 2
Serpula_lacrymans_var._lacrymans_S7.9_ 1 1
Coniophora_puteana 1 1
Hydnomerulius_pinastri_v2.0 1 1
Paxillus_rubicundulus_Ve08.2h10_v1.0 1 1
Pisolithus_microcarpus_441_v1.0 2 2
Pisolithus_tinctorius_Marx_270_v1.0 1 1
Scleroderma_citrinum_Foug_A_v1.0 1 1
Coprinopsis_cinerea_okayama7_130_v3 1 1
Pleurotus_ostreatus_   (Oyster mushroom)   1 1
Amanita_thiersii_Skay4041_v1.0 1 1
Amanita_muscaria_Koide_v1.0   (Fly agaric)   1 1
Galerina_marginata_v1.0 1 1
Hebeloma_cylindrosporum_h7_v2.0 1 1
Laccaria_bicolor_S238N-H82_ 1 1
Agaricus_bisporus_var._bisporus_ 1 1
Schizophyllum_commune_ 1 1
Stereum_hirsutum_FP-91666_SS1__v1.0 1 1
Heterobasidion_annosum_ 1 1
Gloeophyllum_trabeumv1.0 1 1
Punctularia_strigosozonata_v1.0 1 1
Sebacina_vermifera_MAFF_305830_v1.0 2 2
Fomitiporia_mediterranea_v1.0 1 1
Tulasnella_calospora_AL13/4D_v1.0 1 1
Postia_placenta_ 2 2
Wolfiporia_cocos_MD-104_SS10__v1.0 1 1
Fomitopsis_pinicolav1.0 1 1
Fomitopsis_pinicola_FP-58527_SS1_v3.0 1 1
Phanerochaete_chrysosporium_RP-78_2.1 1 1
Dichomitus_squalens 6 6
Trametes_versicolor_v1.0 1 1
Tremella_mesenterica_   (Witches' butter)   1 1
Daldinia_eschscholzii_EC12_v1.0 1 1
Apiospora_montagnei_NRRL_25634_v1.0 1 1
Magnaporthe_poae_ATCC_64411_22 1 1
Magnaporthe_grisea_70-15_ 1 1
Podospora_anserina_ 1 1
Sporotrichum_thermophile_ATCC_42464_ 1 1
Thielavia_terrestris_NRRL_8126_ 1 1
Chaetomium_globosum_CBS_148.51_ 1 1
Neurospora_tetrasperma_ 1 1
Neurospora_discreta_FGSC_8579_ 1 1
Neurospora_crassa_OR74A_ 1 1
Cryphonectria_parasitica_   (Chestnut blight fungus)   1 1
Verticillium_albo-atrum_VaMs.102_ 1 1
Verticillium_dahliae_VdLs.17_ 1 1
Acremonium_alcalophilumv_1.0 1 1
Glomerella_graminicola_22 1 1
Fusarium_graminearum_ 1 1
Nectria_haematococca_mpVI_ 1 1
Fusarium_oxysporum_f._sp._lycopersici_4286_ 1 1
Fusarium_verticillioides_7600_ 1 1
Trichoderma_asperellum_CBS_433.97_v1.0 1 1
Trichoderma_atroviride_ 1 1
Trichoderma_citrinoviride_v1.0 1 1
Trichoderma_reesei_1.2 1 1
Trichoderma_virens_Gv29-8_ 1 1
Trichoderma_longibrachiatum_ATCC_18648_v1.0 1 1
Trichoderma_harzianum_CBS_226.95_v1.0 1 1
Amorphotheca_resinae_v1.0   (Creosote fungus)   1 1
Botrytis_cinerea_B05.10_ 1 1
Sclerotinia_sclerotiorum_ 1 1
Blumeria_graminis_22 1 1
Didymella_exigua_CBS_183.55_v1.0 1 1
Leptosphaeria_maculans_22 1 1
Setosphaeria_turcica_v1.0 1 1
Cochliobolus_miyabeanus_ATCC_44560_v1.0 1 1
Cochliobolus_victoriae_FI3_v1.0 1 1
Cochliobolus_carbonum_26-R-13_v1.0 1 1
Cochliobolus_heterostrophus_   (Southern corn leaf blight pathogen)   1 1
Alternaria_brassicicola_ 1 1
Cochliobolus_lunatus_m118_v2.0 1 1
Pyrenophora_teres_f._teres_22 1 1
Pyrenophora_tritici-repentis_ 1 1
Stagonospora_nodorum_ 1 1
Mycosphaerella_graminicola_IPO323_ 1 1
Zasmidium_cellare_ATCC_36951_v1.0 1 1
Dothistroma_septosporum 1 1
Septoria_musiva_v1.0 1 1
Mycosphaerella_fijiensis_CIRAD86_ 1 1
Aureobasidium_pullulans_var._subglaciale_EXF-2481_v1.0 1 1
Paracoccidioides_brasiliensis_Pb18_ 1 1
Coccidioides_posadasii_RMSCC_3488_ 1 1
Coccidioides_immitis_RS_ 1 1
Ajellomyces_dermatitidis_SLH14081_ 1 1
Histoplasma_capsulatum_class_NAmI_strain_WU24_ 1 1
Microsporum_canis_CBS_113480_ 1 1
Trichophyton_equinum_CBS_127.97_ 1 1
Trichophyton_verrucosum_HKI_0517_ 1 1
Arthroderma_benhamiae_CBS_112371_ 1 1
Trichophyton_tonsurans_CBS_112818_ 2 2
Trichophyton_rubrum_CBS_118892_ 1 1
Uncinocarpus_reesii_1704_ 1 1
Aspergillus_zonatus_v1.0 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1 1
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_acidus_v1.0 1 1
Aspergillus_fumigatus_Af293 1 1
Aspergillus_brasiliensis_v1.0 1 1
Aspergillus_nidulans_FGSC_A4_ 1 1
Aspergillus_sydowii_v1.0 1 1
Aspergillus_versicolor_v1.0 1 1
Aspergillus_glaucus 1 1
Aspergillus_carbonarius_ITEM_5010_ 1 1
Neosartorya_fischeri_NRRL_181_ 1 1
Aspergillus_terreus_NIH2624_ 1 1
Aspergillus_tubingensis_v1.0 1 1
Aspergillus_wentii_v1.0 1 1
Aspergillus_oryzae_RIB40_ 1 1
Aspergillus_niger_22 1 1
Aspergillus_niger_ATCC_1015_ 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Aspergillus_clavatus_NRRL_1_ 1 1
Penicillium_marneffei_ATCC_18224_ 1 1
Tuber_melanosporum_Mel28_22 1 1
Tuber_melanosporum_Vittad_   (Perigord truffle)   1 1
Hansenula_polymorpha_v2.0 1 1
Dekkera_bruxellensis_CBS_2499_v2.0 2 2
Pichia_membranifaciensv1.0 1 1
Candida_tanzawaensis_NRRL_Y-17324__v1.0 1 1
Candida_dubliniensis_CD36_ 1 1
Candida_tropicalis_MYA-3404_ 1 1
Candida_parapsilosis_ 1 1
Candida_albicans_SC5314 1 1
Lodderomyces_elongisporus_NRRL_YB-4239_ 1 1
Babjeviella_inositovora_NRRL_Y-12698_v1.0 1 1
Pichia_stipitis_CBS_6054_ 1 1
Candida_guilliermondii_ATCC_6260_ 1 1
Hyphopichia_burtonii_NRRL_Y-1933_v1.0 1 1
Debaromyces_hansenii 1 1
Wickerhamomyces_anomalus 1 1
Pichia_pastoris_GS115_ 1 1
Hanseniaspora_valbyensis_NRRL_Y-1626_v1.1 1 1
Yarrowia_lipolytica_CLIB122 1 1
Candida_lusitaniae_ATCC_42720_ 1 1
Metschnikowia_bicuspidata_NRRL_YB-4993_v1.0 1 1
Vanderwaltozyma_polyspora_DSM_70294_ 1 1
Candida_glabrata_CBS138 1 1
Kluyveromyces_thermotolerans_CBS_6340 1 1
Lachancea_kluyveri_ 1 1
Kluyveromyces_waltii 1 1
Ashbya_gossypii_ATCC_10895_ 1 1
Zygosaccharomyces_rouxii_ 1 1
Saccharomyces_mikatae_MIT 1 1
Saccharomyces_paradoxus_MIT 1 1
Saccharomyces_cerevisiae_76   (Baker's yeast)   1 1
Saccharomyces_bayanus_MIT 1 1
Kluyveromyces_lactis 1 1
Schizosaccharomyces_cryophilus_OY26_22 1 1
Schizosaccharomyces_octosporus_yFS286_ 1 1
Schizosaccharomyces_japonicus_yFS275_ 1 1
Schizosaccharomyces_pombe   (Fission yeast)   1 1
Catenaria_anguillulae_PL171_v1.0 1 1
Allomyces_macrogynus_ATCC_38327_ 3 3
Spizellomyces_punctatus_DAOM_BR117_ 2 2
Dictyostelium_discoideum 1 1
Dictyostelium_purpureum_ 1 1
Entamoeba_dispar_1.2 2 2
Entamoeba_invadens_1.2 1 1
Entamoeba_histolytica_1 3 3
Selaginella_moellendorffii_ 2 2
Pinus_taeda   (Loblolly pine)   2 1
Picea_abies   (Norway spruce)   1 1
Eucalyptus_grandis_v201   (Rose gum)   2 2
Theobroma_cacao_B97-61/B2_v1   (Cacao)   1 1
Gossypium_raimondii_v221 1 1
Citrus_clementina_v165 2 2
Citrus_sinensis_v154   (Sweet orange)   1 1
Thellungiella_halophila_v173 1 1
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   2 2
Capsella_rubella_v183 1 1
Arabidopsis_lyrata_   (Lyrate rockcress)   4 4
Arabidopsis_thaliana_10   (Thale cress)   1 1
Carica_papaya_   (Papaya)   1 1
Medicago_truncatula_   (Barrel medic)   1 1
Phaseolus_vulgaris_v186   (French bean)   1 1
Glycine_max_v109   (Soybean)   2 2
Cucumis_sativus_v122   (Cucumber)   1 1
Fragaria_vesca_   (Wild strawberry)   1 1
Malus_domestica_v196   (Apple)   3 3
Prunus_persica_v139   (Peach)   1 1
Linum_usitatissimum_v200   (Flax)   4 4
Manihot_esculenta_v147   (Cassava)   1 1
Populus_trichocarpa_v156   (Black cottonwood)   1 1
Vitis_vinifera_   (Wine grape)   1 1
Mimulus_guttatus_v140   (Spotted monkey flower)   1 1
Solanum_lycopersicum_v.2.3   (Tomato)   1 1
Solanum_tuberosum_   (Potato)   1 1
Actinidia_chinensis_Hongyang_ 2 2
Aquilegia_coerulea_v195 2 2
Triticum_urartu_22 1 1
Triticum_aestivum_22   (Bread wheat)   3 3
Aegilops_tauschii_22 1 1
Brachypodium_distachyon_   (Stiff brome)   2 2
Oryza_barthii_22   (African wild rice)   3 3
Oryza_meridionalis_22 1 1
Oryza_glumaepatula_22 2 2
Oryza_glaberrima   (African rice)   2 2
Oryza_punctata_22 3 3
Oryza_nivara_22 2 2
Oryza_brachyantha_22   (Malo sina)   1 1
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   2 2
Oryza_sativa_v193   (Rice)   2 2
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   2 1
Panicum_virgatum_v202   (Switchgrass)   3 3
Setaria_italica_v164   (Foxtail millet)   2 2
Musa_balbisiana   (Balbis banana)   1 1
Musa_acuminata_22   (Wild Malaysian banana)   1 1
Amborella_trichopoda_22 1 1
Physcomitrella_patens 1 1
Coccomyxa_subellipsoidea_sp._C-169_v2 1 1
Asterochloris_sp._Cgr/DA1pho_v1.0 8 8
Chlorella_variabilis_sp._NC64A_ 1 1
Chlorella_vulgaris_ 1 1
Volvox_carteri_f._nagariensis_ 1 1
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 1 1
Ostreococcus_sp._RCC809_ 6 6
Ostreococcus_lucimarinus_CCE9901_ 5 5
Bathycoccus_prasinos_ 4 4
Cyanidioschyzon_merolae_strain_10D_22 1 1
Cyanidioschyzon_merolae 1 1
Porphyridium_purpureum_02_2012 1 1
Thecamonas_trahens_ATCC_50062_ 1 1
Bigelowiella_natans_CCMP2755_22 1 1
Giardia_lamblia_2.3 1 1
Cyanophora_paradoxa_ 4 4
Leishmania_mexicana_2.4 1 1
Leishmania_major_strain_Friedlin_ 1 1
Leishmania_infantum_JPCM5_2.4 1 1
Leishmania_braziliensis_MHOM/BR/75/M2904_2.4 1 1
Trypanosoma_vivax_ 1 1
Trypanosoma_congolense_2.4 1 1
Trypanosoma_brucei_gambiense_v4.1 1 1
Trypanosoma_brucei_TREU927_v4.1 1 1
Ectocarpus_siliculosus 1 1
Aureococcus_anophagefferens_ 1 1
Albugo_laibachii_22 1 1
Pythium_iwayamai_DAOM_BR242034_22 1 1
Pythium_arrhenomanes_ATCC_12531_22 1 1
Pythium_ultimum_v1.7-2 1 1
Pythium_aphanidermatum_DAOM_BR444_22 1 1
Pythium_irregulare_DAOM_BR486_22 1 1
Pythium_vexans_DAOM_BR484_22 1 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   1 1
Phytophthora_sojae_1.1 1 1
Phytophthora_infestans_T30-4_ 1 1
Phytophthora_capsici_ 1 1
Hyaloperonospora_arabidopsidis_22 2 2
Phaeodactylum_tricornutumCCAP_1055/1 1 1
Fragilariopsis_cylindrus 2 2
Thalassiosira_pseudonana_CCMP1335 1 1
Perkinsus_marinus_ATCC_50983_ 2 2
Paramecium_tetraurelia_ 1 1
Tetrahymena_thermophila_SB210_1_ 1 1
Ichthyophthirius_multifiliis_strain_G5_ 1 1
Cryptosporidium_hominis 2 2
Cryptosporidium_muris 1 1
Cryptosporidium_parvum_Iowa_II 1 1
Neospora_caninum 1 1
Toxoplasma_gondii_VEG 1 1
Toxoplasma_gondii_ME49 1 1
Toxoplasma_gondii_GT1 1 1
Babesia_bovis_T2Bo_ 2 2
Theileria_parva__ 1 1
Theileria_annulata 1 1
Plasmodium_falciparum_3D7_ 1 1
Plasmodium_vivax_SaI-1_7.0 1 1
Plasmodium_knowlesi_strain_H_ 1 1
Plasmodium_yoelii_ssp._yoelii_1_ 1 1
Plasmodium_chabaudi_ 1 1
Plasmodium_berghei_ANKA_ 1 1
Symbiodinium_minutum_clade_B1_v1.2 1 1
Naegleria_gruberi_ 1 1
Trichomonas_vaginalis_ 510 510
Guillardia_theta_CCMP2712_v1.0_ 4 4
Emiliania_huxleyi_CCMP1516_ 3 2
Pseudanabaena_sp._PCC_7367 1 1
Acaryochloris_marina_MBIC11017 1 1
Microcoleus_sp._PCC_7113 1 1
Geodermatophilus_obscurus_DSM_43160 1 1
Catenulispora_acidiphila_DSM_44928 1 1
Stackebrandtia_nassauensis_DSM_44728 1 1
Frankia_symbiont_of_Datisca_glomerata 3 3
Thermomonospora_curvata_DSM_43183 1 1
Streptomyces_coelicolor_A3(2) 3 3
Streptomyces_sp._PAMC26508 2 2
Streptomyces_flavogriseus_ATCC_33331 3 3
Streptomyces_griseus_subsp._griseus_NBRC_13350 2 2
Streptomyces_violaceusniger_Tu_4113 1 1
Streptomyces_avermitilis_MA-4680 2 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_scabiei_87.22 2 2
Streptomyces_hygroscopicus_subsp._jinggangensis_5008 2 2
Actinosynnema_mirum_DSM_43827 1 1
Pseudonocardia_dioxanivorans_CB1190 3 3
Saccharopolyspora_erythraea_NRRL_2338 2 2
Amycolatopsis_mediterranei_U32 1 1
Kribbella_flavida_DSM_17836 4 4
Microlunatus_phosphovorus_NM-1 1 1
Salinispora_arenicola_CNS-205 2 2
Salinispora_tropica_CNB-440 1 1
Verrucosispora_maris_AB-18-032 2 2
Micromonospora_sp._L5 2 2
Actinoplanes_sp._N902-109 3 3
Actinoplanes_sp._SE50/110 2 2
Actinoplanes_missouriensis_431 1 1
Segniliparus_rotundus_DSM_44985 1 1
Tsukamurella_paurometabola_DSM_20162 1 1
Gordonia_polyisoprenivorans_VH2 1 1
Rhodococcus_erythropolis_PR4 1 1
Nocardia_cyriacigeorgica_GUH-2 2 2
Nocardia_farcinica_IFM_10152 1 1
Amycolicicoccus_subflavus_DQS3-9A1 1 1
Mycobacterium_intracellulare_ATCC_13950 2 2
Mycobacterium_avium_104 2 2
Mycobacterium_gilvum_PYR-GCK 1 1
Mycobacterium_marinum_M 1 1
Corynebacterium_efficiens_YS-314 1 1
Kytococcus_sedentarius_DSM_20547 1 1
Beutenbergia_cavernae_DSM_12333 1 1
Xylanimonas_cellulosilytica_DSM_15894 1 1
Arthrobacter_phenanthrenivorans_Sphe3 1 1
Arthrobacter_arilaitensis_Re117 1 1
Kocuria_rhizophila_DC2201 1 1
Micrococcus_luteus_NCTC_2665 1 1
Bifidobacterium_dentium_Bd1 1 1
Bifidobacterium_bifidum_S17 1 1
Thermomicrobium_roseum_DSM_5159 1 1
Sphaerobacter_thermophilus_DSM_20745 1 1
Deinococcus_gobiensis_I-0 1 1
Deinococcus_maricopensis_DSM_21211 1 1
Deinococcus_geothermalis_DSM_11300 1 1
Deinococcus_proteolyticus_MRP 1 1
Meiothermus_silvanus_DSM_9946 2 2
Meiothermus_ruber_DSM_1279 1 1
Thermus_scotoductus_SA-01 2 2
Thermus_thermophilus_HB27 1 1
Finegoldia_magna_ATCC_29328 1 1
Natranaerobius_thermophilus_JW/NM-WN-LF 1 1
Clostridium_thermocellum_ATCC_27405 3 3
Pelotomaculum_thermopropionicum_SI 2 2
Eubacterium_limosum_KIST612 1 1
Clostridium_lentocellum_DSM_5427 1 1
Eubacterium_rectale_M104/1 1 1
Clostridium_novyi_NT 1 1
Clostridium_cellulovorans_743B 1 1
Mahella_australiensis_50-1_BON 1 1
Caldicellulosiruptor_lactoaceticus_6A 1 1
Caldicellulosiruptor_bescii_DSM_6725 2 2
Ammonifex_degensii_KC4 3 3
Enterococcus_faecium_Aus0004 1 1
Leuconostoc_kimchii_IMSNU_11154 1 1
Leuconostoc_citreum_KM20 1 1
Leuconostoc_gasicomitatum_LMG_18811 2 2
Lactobacillus_rhamnosus_Lc_705 2 2
Lactobacillus_johnsonii_FI9785 1 1
Lactobacillus_salivarius_CECT_5713 2 2
Lactobacillus_fermentum_IFO_3956 1 1
Lactobacillus_sakei_subsp._sakei_23K 1 1
Lactobacillus_plantarum_JDM1 2 2
Lactobacillus_buchneri_NRRL_B-30929 1 1
Pediococcus_claussenii_ATCC_BAA-344 1 1
Lactococcus_lactis_subsp._cremoris_MG1363 3 3
Streptococcus_equi_subsp._equi_4047 1 1
Streptococcus_mitis_B6 1 1
Streptococcus_agalactiae_A909 1 1
Streptococcus_salivarius_57.I 1 1
Exiguobacterium_sp._AT1b 1 1
Kyrpidia_tusciae_DSM_2912 1 1
Geobacillus_thermoglucosidasius_C56-YS93 1 1
Anoxybacillus_flavithermus_WK1 1 1
Candidatus_Cloacamonas_acidaminovorans 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1 1
Isosphaera_pallida_ATCC_43644 1 1
Planctomyces_brasiliensis_DSM_5305 2 2
Rhodopirellula_baltica_SH_1 1 1
Pirellula_staleyi_DSM_6068 1 1
Anaerobaculum_mobile_DSM_13181 1 1
Thermodesulfatator_indicus_DSM_15286 1 1
Calditerrivibrio_nitroreducens_DSM_19672 1 1
Marinitoga_piezophila_KA3 1 1
Elusimicrobium_minutum_Pei191 1 1
Terriglobus_roseus_DSM_18391 1 1
Bdellovibrio_bacteriovorus_HD100 1 1
Nautilia_profundicola_AmH 1 1
Nitratifractor_salsuginis_DSM_16511 1 1
Sulfurospirillum_deleyianum_DSM_6946 1 1
Sulfurospirillum_barnesii_SES-3 1 1
Campylobacter_lari_RM2100 1 1
Campylobacter_curvus_525.92 1 1
Campylobacter_concisus_13826 1 1
Campylobacter_jejuni_subsp._doylei_269.97 1 1
Campylobacter_sp._03-427 1 1
Campylobacter_fetus_subsp._fetus_82-40 1 1
uncultured_Sulfuricurvum_sp._RIFRC-1 1 1
Sulfuricurvum_kujiense_DSM_16994 1 1
Sulfurimonas_autotrophica_DSM_16294 1 1
Sulfurimonas_denitrificans_DSM_1251 1 1
Wolinella_succinogenes_DSM_1740 1 1
Helicobacter_cetorum_MIT_00-7128 1 1
Helicobacter_bizzozeronii_CIII-1 1 1
Helicobacter_hepaticus_ATCC_51449 1 1
Helicobacter_felis_ATCC_49179 1 1
Helicobacter_cinaedi_PAGU611 1 1
Helicobacter_acinonychis_str._Sheeba 1 1
Helicobacter_pylori_B38 1 1
Sulfurovum_sp._NBC37-1 1 1
Desulfarculus_baarsii_DSM_2075 2 2
Desulfomonile_tiedjei_DSM_6799 3 3
Syntrophobacter_fumaroxidans_MPOB 1 1
Desulfatibacillum_alkenivorans_AK-01 1 1
Desulfococcus_oleovorans_Hxd3 1 1
Desulfovibrio_magneticus_RS-1 4 4
Pelobacter_propionicus_DSM_2379 1 1
Corallococcus_coralloides_DSM_2259 1 1
Azoarcus_sp._BH72 1 1
Burkholderia_sp._CCGE1002 1 1
Burkholderia_cenocepacia_HI2424 1 1
Polaromonas_sp._JS666 1 1
Magnetococcus_marinus_MC-1 1 1
Sphingobium_sp._SYK-6 1 1
Sphingobium_chlorophenolicum_L-1 2 2
Sphingomonas_sp._MM-1 1 1
Sphingomonas_wittichii_RW1 1 1
Magnetospirillum_magneticum_AMB-1 2 2
Gluconacetobacter_xylinus_NBRC_3288 2 2
Acidiphilium_cryptum_JF-5 1 1
Acetobacter_pasteurianus_IFO_3283-01 1 1
Polymorphum_gilvum_SL003B-26A1 1 1
Micavibrio_aeruginosavorus_ARL-13 1 1
Methylobacterium_sp._4-46 1 1
Methylobacterium_nodulans_ORS_2060 4 4
Methylobacterium_radiotolerans_JCM_2831 1 1
Sinorhizobium_fredii_NGR234 1 1
Sinorhizobium_meliloti_AK83 1 1
Genome_sequence_of_Rhizobium_sp._strain_IRBG74 1 1
Agrobacterium_sp._H13-3 1 1
Candidatus_Liberibacter_asiaticus_str._psy62 1 1
Mesorhizobium_opportunistum_WSM2075 1 1
Rhodomicrobium_vannielii_ATCC_17100 1 1
Hyphomicrobium_sp._MC1 1 1
Nitrobacter_winogradskyi_Nb-255 1 1
Nitrobacter_hamburgensis_X14 2 2
Bradyrhizobium_japonicum_USDA_110 1 1
Alkalilimnicola_ehrlichii_MLHE-1 1 1
Nitrosococcus_halophilus_Nc4 1 1
Legionella_longbeachae_NSW150 1 1
Pseudomonas_stutzeri_A1501 1 1
Pseudomonas_fulva_12-X 1 1
Nanoarchaeum_equitans_Kin4-M 1 1
Candidatus_Caldiarchaeum_subterraneum 2 2
Cenarchaeum_symbiosum_A 1 1
Candidatus_Nitrosopumilus_sp._AR2 1 1
Nitrosopumilus_maritimus_SCM1 1 1
Candidatus_Korarchaeum_cryptofilum_OPF8 2 2
Acidilobus_saccharovorans_345-15 1 1
Fervidicoccus_fontis_Kam940 1 1
Pyrolobus_fumarii_1A 2 2
Hyperthermus_butylicus_DSM_5456 2 2
Thermogladius_cellulolyticus_1633 2 2
Ignisphaera_aggregans_DSM_17230 2 2
Aeropyrum_pernix_K1 1 1
Ignicoccus_hospitalis_KIN4/I 1 1
Thermosphaera_aggregans_DSM_11486 1 1
Staphylothermus_hellenicus_DSM_12710 2 2
Staphylothermus_marinus_F1 1 1
Desulfurococcus_fermentans_DSM_16532 1 1
Desulfurococcus_kamchatkensis_1221n 2 2
Desulfurococcus_mucosus_DSM_2162 1 1
Metallosphaera_cuprina_Ar-4 1 1
Metallosphaera_sedula_DSM_5348 1 1
Acidianus_hospitalis_W1 2 2
Sulfolobus_tokodaii_str._7 4 4
Sulfolobus_islandicus_Y.N.15.51 1 1
Sulfolobus_solfataricus_P2 2 2
Sulfolobus_acidocaldarius_DSM_639 1 1
Thermofilum_sp._1910b 2 2
Thermofilum_pendens_Hrk_5 2 2
Vulcanisaeta_moutnovskia_768-28 1 1
Vulcanisaeta_distributa_DSM_14429 1 1
Caldivirga_maquilingensis_IC-167 1 1
Pyrobaculum_sp._1860 1 1
Pyrobaculum_calidifontis_JCM_11548 1 1
Pyrobaculum_arsenaticum_DSM_13514 1 1
Pyrobaculum_oguniense_TE7 1 1
Thermoproteus_neutrophilus_V24Sta 1 1
Pyrobaculum_aerophilum_str._IM2 1 1
Pyrobaculum_islandicum_DSM_4184 1 1
Thermoproteus_uzoniensis_768-20 2 2
Thermoproteus_tenax_Kra_1 1 1
halophilic_archaeon_DL31 2 2
Methanocella_arvoryzae_MRE50 2 2
Methanocella_conradii_HZ254 1 1
Methanocella_paludicola_SANAE 3 3
Methanosaeta_harundinacea_6Ac 1 1
Methanosaeta_thermophila_PT 1 1
Methanosaeta_concilii_GP6 1 1
Methanosalsum_zhilinae_DSM_4017 2 2
Methanohalobium_evestigatum_Z-7303 1 1
Methanococcoides_burtonii_DSM_6242 1 1
Methanosarcina_acetivorans_C2A 1 1
Methanosarcina_mazei_Go1 1 1
Methanosarcina_barkeri_str._Fusaro 1 1
Methanohalophilus_mahii_DSM_5219 1 1
Methanosphaerula_palustris_E1-9c 1 1
Methanoregula_boonei_6A8 1 1
Methanospirillum_hungatei_JF-1 3 3
Methanocorpusculum_labreanum_Z 1 1
Methanoplanus_petrolearius_DSM_11571 2 2
Methanoculleus_bourgensis_MS2 1 1
Methanoculleus_marisnigri_JR1 1 1
Methanopyrus_kandleri_AV19 1 1
Ferroglobus_placidus_DSM_10642 3 3
Archaeoglobus_profundus_DSM_5631 3 3
Archaeoglobus_veneficus_SNP6 2 2
Archaeoglobus_fulgidus_DSM_4304 2 2
Thermococcus_sp._4557 1 1
Thermococcus_onnurineus_NA1 1 1
Thermococcus_kodakarensis_KOD1 1 1
Thermococcus_gammatolerans_EJ3 1 1
Thermococcus_sibiricus_MM_739 1 1
Thermococcus_barophilus_MP 1 1
Pyrococcus_sp._ST04 1 1
Pyrococcus_yayanosii_CH1 1 1
Pyrococcus_horikoshii_OT3 1 1
Pyrococcus_abyssi_GE5 1 1
Pyrococcus_furiosus_COM1 1 1
Thermoplasmatales_archaeon_BRNA1 1 1
Thermoplasma_volcanium_GSS1 1 1
Thermoplasma_acidophilum_DSM_1728 1 1
Picrophilus_torridus_DSM_9790 2 2
Salinarchaeum_sp._Harcht-Bsk1 1 1
Halopiger_xanaduensis_SH-6 2 2
Haloterrigena_turkmenica_DSM_5511 2 2
Natrinema_sp._J7-2 3 3
Natrialba_magadii_ATCC_43099 1 1
Halorubrum_lacusprofundi_ATCC_49239 1 1
Haloquadratum_walsbyi_DSM_16790 1 1
Halogeometricum_borinquense_DSM_11551 1 1
Haloferax_mediterranei_ATCC_33500 1 1
Haloferax_volcanii_DS2 2 2
Halomicrobium_mukohataei_DSM_12286 1 1
Halorhabdus_utahensis_DSM_12940 1 1
Natronomonas_pharaonis_DSM_2160 1 1
Haloarcula_hispanica_ATCC_33960 1 1
Haloarcula_marismortui_ATCC_43049 1 1
Halalkalicoccus_jeotgali_B3 1 1
Halobacterium_salinarum_R1 2 2
Halobacterium_sp._NRC-1 2 2
Methanotorris_igneus_Kol_5 1 1
Methanocaldococcus_sp._FS406-22 1 1
Methanocaldococcus_fervens_AG86 1 1
Methanocaldococcus_vulcanius_M7 1 1
methanocaldococcus_infernus_ME 1 1
Methanocaldococcus_jannaschii_DSM_2661 2 2
Methanothermococcus_okinawensis_IH1 1 1
Methanococcus_aeolicus_Nankai-3 1 1
Methanococcus_maripaludis_C5 1 1
Methanococcus_voltae_A3 1 1
Methanococcus_vannielii_SB 1 1
Methanothermus_fervidus_DSM_2088 1 1
Methanothermobacter_marburgensis_str._Marburg 1 1
Methanothermobacter_thermautotrophicus_str._Delta_H 1 1
Methanosphaera_stadtmanae_DSM_3091 1 1
Methanobrevibacter_sp._AbM4 1 1
Methanobrevibacter_ruminantium_M1 1 1
Methanobrevibacter_smithii_ATCC_35061 1 1
Complete_genome_sequence_of_Methanobacterium_sp._Mb1 2 2
Aciduliprofundum_sp._MAR08-339 1 1
Aciduliprofundum_boonei_T469 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   3 3
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   1 1
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   1 1
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   1 1
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   2 2
Cryptococcus_neoformans_var._grubii_H99_ 1 1
Cryptococcus_neoformans_B-3501A_ 1 1
Cryptococcus_neoformans_JEC21_ 1 1
Paracoccidioides_brasiliensis_Pb01_ 1 1
Paracoccidioides_brasiliensis_Pb03_ 1 1
Coccidioides_posadasii_str._Silveira_ 1 1
Coccidioides_immitis_RMSCC_3703_ 1 1
Coccidioides_immitis_RMSCC_2394_ 1 1
Coccidioides_immitis_H538.4_ 1 1
Ajellomyces_dermatitidis_ER-3_ 1 1
Histoplasma_capsulatum_H143 1 1
Histoplasma_capsulatum_H88 1 1
Histoplasma_capsulatum_G186AR 1 1
Aspergillus_fumigatus_A1163_ 1 1
Candida_albicans_WO-1_ 1 1
Saccharomyces_cerevisiae_UC5 1 1
Saccharomyces_cerevisiae_PW5 1 1
Saccharomyces_cerevisiae_FL100 1 1
Saccharomyces_cerevisiae_CLIB324 1 1
Saccharomyces_cerevisiae_CBS7960 1 1
Saccharomyces_cerevisiae_YJM269 1 1
Saccharomyces_cerevisiae_T7 1 1
Saccharomyces_cerevisiae_FostersB 1 1
Saccharomyces_cerevisiae_FostersO 1 1
Saccharomyces_cerevisiae_VL3 1 1
Saccharomyces_cerevisiae_Vin13 1 1
Saccharomyces_cerevisiae_AWRI796 1 1
Saccharomyces_cerevisiae_Sigma1278b 1 1
Saccharomyces_cerevisiae_W303 1 1
Saccharomyces_cerevisiae_JAY291 1 1
Saccharomyces_cerevisiae_YPS163 1 1
Saccharomyces_cerevisiae_M22 1 1
Saccharomyces_cerevisiae_CLIB215 1 1
Saccharomyces_cerevisiae_YJM789_ 1 1
Saccharomyces_cerevisiae_YJM789 1 1
Saccharomyces_cerevisiae_RM11-1a 1 1
Saccharomyces_cerevisiae_RM11-1a_ 1 1
Saccharomyces_cerevisiae_SGD_(SGD)   (Baker's yeast)   1 1
Schizosaccharomyces_pombe_972h-_ 1 1
Batrachochytrium_dendrobatidis_JEL423_ 1 1
Batrachochytrium_dendrobatidis_JAM81_ 1 1
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   1 1
Hordeum_vulgare_22   (Domesticated barley)   2 2
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   1 1
Trypanosoma_brucei_Lister_427_v4.1 1 1
Neospora_caninum_Nc-Liverpool_6.2 1 1
Plasmodium_falciparum_HB3_ 1 1
Oscillatoria_nigro-viridis_PCC_7112 1 1
Cyanothece_sp._PCC_7822 1 1
Frankia_sp._EuI1c 1 1
Frankia_sp._CcI3 1 1
Nocardiopsis_alba_ATCC_BAA-2165 1 1
Streptomyces_albus_J1074 1 1
Streptomyces_rapamycinicus_NRRL_5491 2 2
Streptomyces_davawensis_JCM_4913 2 2
Streptomyces_fulvissimus_DSM_40593 2 2
Streptomyces_venezuelae_ATCC_10712 1 1
Streptomyces_collinus_Tu_365 2 2
Streptomyces_cattleya_NRRL_8057_=_DSM_46488 1 1
Streptomyces_hygroscopicus_subsp._jinggangensis_TL01 2 2
Saccharothrix_espanaensis_DSM_44229 2 2
Amycolatopsis_mediterranei_RB 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_mediterranei_S699 1 1
Amycolatopsis_orientalis_HCCB10007 1 1
Propionibacterium_avidum_44067 1 1
Actinoplanes_friuliensis_DSM_7358 3 3
Nocardia_brasiliensis_ATCC_700358 2 2
Mycobacterium_sp._MOTT36Y 1 1
Mycobacterium_sp._JDM601 1 1
Mycobacterium_abscessus_subsp._bolletii_50594 1 1
Mycobacterium_sp._KMS 2 2
Mycobacterium_sp._MCS 1 1
Mycobacterium_yongonense_05-1390 1 1
Mycobacterium_indicus_pranii_MTCC_9506 1 1
Mycobacterium_intracellulare_MOTT-02 1 1
Mycobacterium_gilvum_Spyr1 1 1
Mycobacterium_kansasii_ATCC_12478 1 1
Corynebacterium_maris_DSM_45190 1 1
Corynebacterium_halotolerans_YIM_70093_=_DSM_44683 1 1
Corynebacterium_terpenotabidum_Y-11 1 1
Corynebacterium_glutamicum_SCgG2 1 1
Corynebacterium_glutamicum_SCgG1 1 1
Clavibacter_michiganensis_subsp._nebraskensis_NCPPB_2581 1 1
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 2 2
Bifidobacterium_longum_subsp._infantis_ATCC_15697_=_JCM_1222 2 2
Bifidobacterium_longum_subsp._longum_JCM_1217 1 1
Dehalococcoides_mccartyi_GY50 2 2
Deinococcus_peraridilitoris_DSM_19664 2 2
Thermus_oshimai_JL-2 1 1
Thermus_thermophilus_SG0.5JP17-16 1 1
Clostridium_thermocellum_DSM_1313 1 1
Clostridium_botulinum_E3_str._Alaska_E43 1 1
Enterococcus_faecium_DO 1 1
Lactobacillus_paracasei_subsp._paracasei_8700:2 1 1
Lactobacillus_casei_LOCK919 1 1
Lactobacillus_casei_W56 2 2
Lactobacillus_casei_LC2W 2 2
Lactobacillus_casei_BD-II 2 2
Lactobacillus_casei_BL23 2 2
Lactobacillus_casei_str._Zhang 1 1
Lactobacillus_rhamnosus_LOCK908 1 1
Lactobacillus_rhamnosus_GG 1 1
Lactobacillus_rhamnosus_GG 1 1
Lactobacillus_salivarius_UCC118 2 2
Lactobacillus_fermentum_CECT_5716 1 1
Lactobacillus_reuteri_TD1 1 1
Lactobacillus_reuteri_I5007 1 1
Lactobacillus_reuteri_SD2112 1 1
Lactobacillus_plantarum_16 1 1
Lactobacillus_plantarum_ZJ316 1 1
Lactobacillus_plantarum_subsp._plantarum_P-8 1 1
Lactobacillus_plantarum_WCFS1 2 2
Lactobacillus_helveticus_CNRZ32 1 1
Lactobacillus_brevis_KB290 1 1
Pediococcus_pentosaceus_SL4 1 1
Lactococcus_lactis_subsp._lactis_KLDS_4.0325 3 3
Lactococcus_lactis_subsp._lactis_CV56 2 2
Lactococcus_lactis_subsp._lactis_KF147 1 1
Lactococcus_lactis_subsp._lactis_Il1403 1 1
Lactococcus_lactis_subsp._cremoris_KW2 1 1
Lactococcus_lactis_subsp._cremoris_A76 2 2
Lactococcus_lactis_subsp._cremoris_NZ9000 3 3
Lactococcus_lactis_subsp._cremoris_SK11 1 1
Streptococcus_pyogenes_HSC5 1 1
Streptococcus_pyogenes_MGAS1882 1 1
Streptococcus_pyogenes_Alab49 1 1
Streptococcus_pyogenes_MGAS10750 2 2
Streptococcus_pyogenes_MGAS10270 2 2
Streptococcus_pyogenes_MGAS9429 1 1
Streptococcus_pyogenes_MGAS6180 1 1
Streptococcus_pyogenes_MGAS8232 1 1
Streptococcus_pyogenes_MGAS315 2 2
Streptococcus_pyogenes_SSI-1 2 2
Streptococcus_suis_T15 1 1
Streptococcus_suis_ST3 1 1
Alicyclobacillus_acidocaldarius_subsp._acidocaldarius_Tc-4-1 1 1
Paenibacillus_polymyxa_CR1 1 1
Bacillus_thuringiensis_HD-771 1 1
Bacillus_thuringiensis_HD-789 1 1
Bacillus_thuringiensis_serovar_chinensis_CT-43 1 1
Bacillus_thuringiensis_Bt407 1 1
Bacillus_thuringiensis_serovar_thuringiensis_str._IS5056 1 1
Bacillus_cereus_G9842 1 1
Bacillus_cereus_ATCC_14579 1 1
Staphylococcus_pasteuri_SP1 1 1
Staphylococcus_aureus_subsp._aureus_T0131 1 1
Staphylococcus_aureus_subsp._aureus_LGA251 1 1
Psychroflexus_torquis_ATCC_700755 1 1
Fibrobacter_succinogenes_subsp._succinogenes_S85 1 1
Leptospirillum_ferriphilum_ML-04 1 1
Campylobacter_jejuni_Waterborne_C.jejuni_Outbreak 1 1
Campylobacter_jejuni_RM1221 1 1
Campylobacter_jejuni_subsp._jejuni_00-2544 1 1
Campylobacter_jejuni_subsp._jejuni_00-2538 1 1
Campylobacter_jejuni_subsp._jejuni_00-2426 1 1
Campylobacter_jejuni_subsp._jejuni_00-2425 1 1
Campylobacter_jejuni_subsp._jejuni_PT14 1 1
Campylobacter_jejuni_subsp._jejuni_ICDCCJ07001 1 1
Campylobacter_jejuni_subsp._jejuni_S3 1 1
Campylobacter_jejuni_subsp._jejuni_M1 1 1
Campylobacter_jejuni_subsp._jejuni_IA3902 1 1
Campylobacter_jejuni_subsp._jejuni_81116 1 1
Campylobacter_jejuni_subsp._jejuni_81-176 2 1
Campylobacter_jejuni_subsp._jejuni_NCTC_11168-BN148 1 1
Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 1 1
Campylobacter_coli_76339 1 1
Campylobacter_coli_15-537360 1 1
Campylobacter_coli_CVM_N29710 1 1
Helicobacter_cetorum_MIT_99-5656 1 1
Helicobacter_pylori_BM012S 1 1
Helicobacter_pylori_BM012A 1 1
Helicobacter_pylori_SouthAfrica20 1 1
Helicobacter_pylori_UM298 1 1
Helicobacter_pylori_UM066 1 1
Helicobacter_pylori_UM037 1 1
Helicobacter_pylori_UM299 1 1
Helicobacter_pylori_OK310 1 1
Helicobacter_pylori_OK113 1 1
Helicobacter_pylori_Rif2 1 1
Helicobacter_pylori_Rif1 1 1
Helicobacter_pylori_HUP-B14 1 1
Helicobacter_pylori_PeCan18 1 1
Helicobacter_pylori_Shi169 1 1
Helicobacter_pylori_Shi112 1 1
Helicobacter_pylori_Shi417 1 1
Helicobacter_pylori_XZ274 1 1
Helicobacter_pylori_Aklavik86 1 1
Helicobacter_pylori_Aklavik117 1 1
Helicobacter_pylori_SNT49 1 1
Helicobacter_pylori_Puno135 1 1
Helicobacter_pylori_Puno120 1 1
Helicobacter_pylori_ELS37 1 1
Helicobacter_pylori_Gambia94/24 1 1
Helicobacter_pylori_SouthAfrica7 1 1
Helicobacter_pylori_India7 1 1
Helicobacter_pylori_Lithuania75 1 1
Helicobacter_pylori_2017 1 1
Helicobacter_pylori_2018 1 1
Helicobacter_pylori_908 1 1
Helicobacter_pylori_F57 1 1
Helicobacter_pylori_F30 1 1
Helicobacter_pylori_F16 1 1
Helicobacter_pylori_Sat464 1 1
Helicobacter_pylori_Cuz20 1 1
Helicobacter_pylori_PeCan4 1 1
Helicobacter_pylori_SJM180 1 1
Helicobacter_pylori_B8 1 1
Helicobacter_pylori_52 1 1
Helicobacter_pylori_v225d 1 1
Helicobacter_pylori_83 1 1
Helicobacter_pylori_35A 1 1
Helicobacter_pylori_P12 1 1
Helicobacter_pylori_G27 1 1
Helicobacter_pylori_Shi470 1 1
Helicobacter_pylori_HPAG1 1 1
Helicobacter_pylori_51 1 1
Helicobacter_pylori_F32 1 1
Helicobacter_pylori_J99 1 1
Helicobacter_pylori_26695 1 1
Helicobacter_pylori_26695 1 1
Geobacter_sp._M18 1 1
Myxococcus_stipitatus_DSM_14675 1 1
Ralstonia_solanacearum_PSI07 1 1
Burkholderia_cenocepacia_AU_1054 1 1
Variovorax_paradoxus_B4 1 1
Octadecabacter_arcticus_238 2 2
Magnetospirillum_gryphiswaldense_MSR-1_v2 1 1
Acetobacter_pasteurianus_IFO_3283-12 1 1
Acetobacter_pasteurianus_IFO_3283-01-42C 1 1
Acetobacter_pasteurianus_IFO_3283-32 1 1
Acetobacter_pasteurianus_IFO_3283-26 1 1
Acetobacter_pasteurianus_IFO_3283-22 1 1
Acetobacter_pasteurianus_IFO_3283-07 1 1
Acetobacter_pasteurianus_IFO_3283-03 1 1
Methylobacterium_extorquens_DM4 2 2
Methylobacterium_extorquens_PA1 1 1
Sinorhizobium_fredii_HH103 1 1
Candidatus_Liberibacter_solanacearum_CLso-ZC1 2 2
Candidatus_Liberibacter_americanus_str._Sao_Paulo 1 1
Candidatus_Liberibacter_asiaticus_str._gxpsy 2 2
Hyphomicrobium_nitrativorans_NL23 1 1
Rhodopseudomonas_palustris_HaA2 1 1
Bradyrhizobium_sp._S23321 2 2
Bradyrhizobium_sp._BTAi1 1 1
Bradyrhizobium_oligotrophicum_S58 1 1
Bradyrhizobium_japonicum_USDA_6 2 2
Alteromonas_macleodii_str._'Ionian_Sea_U8' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U7' 1 1
Alteromonas_macleodii_str._'Ionian_Sea_U4' 1 1
Pseudomonas_stutzeri_CCUG_29243 1 1
Pseudomonas_stutzeri_DSM_10701 1 1
Pseudomonas_stutzeri_DSM_4166 1 1
Pseudomonas_stutzeri_ATCC_17588_=_LMG_11199 1 1
Pseudomonas_putida_H8234 1 1
Pseudomonas_putida_ND6 1 1
Pseudomonas_putida_KT2440 1 1
Pseudomonas_putida_GB-1 2 2
Pseudomonas_resinovorans_NBRC_106553 1 1
Acinetobacter_lwoffii__SH145 1 1
Candidatus_Nitrososphaera_gargensis_Ga9.2 1 1
Candidatus_Nitrosoarchaeum_koreensis_Candidatus_Nitrosopumilus_koreensis_AR1 1 1
Caldisphaera_lagunensis_DSM_15908 1 1
Aeropyrum_camini_SY1_=_JCM_12091 1 1
Sulfolobus_islandicus_LAL14/1 1 1
Sulfolobus_islandicus_REY15A 1 1
Sulfolobus_islandicus_HVE10/4 1 1
Sulfolobus_islandicus_Y.G.57.14 2 2
Sulfolobus_islandicus_L.S.2.15 2 2
Sulfolobus_islandicus_M.16.27 2 2
Sulfolobus_islandicus_M.14.25 2 2
Sulfolobus_islandicus_M.16.4 1 1
Sulfolobus_islandicus_L.D.8.5 1 1
Sulfolobus_solfataricus_98/2 1 1
Sulfolobus_acidocaldarius_SUSAZ 1 1
Sulfolobus_acidocaldarius_Ron12/I 1 1
Sulfolobus_acidocaldarius_N8 1 1
Methanomethylovorans_hollandica_DSM_15978 3 3
Methanolobus_psychrophilus_R15 2 2
Methanosarcina_mazei_Tuc01 1 1
Methanoregula_formicica_Methanoregula_formicicum_SMSP 1 1
Archaeoglobus_sulfaticallidus_PM70-1 1 1
Thermococcus_sp._AM4 1 1
Thermococcus_sp._CL1 1 1
Thermococcus_litoralis_DSM_5473 1 1
Pyrococcus_sp._NA2 1 1
Pyrococcus_furiosus_DSM_3638 1 1
Candidatus_Methanomethylophilus_alvus_Mx1201 1 1
Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 1 1
Ferroplasma_acidarmanus_fer1 2 2
Halovivax_ruber_XH-70 1 1
Natrinema_pellirubrum_DSM_15624 1 1
Natronococcus_occultus_SP4 1 1
Natronobacterium_gregoryi_SP2 1 1
Haloquadratum_walsbyi_C23 1 1
Halorhabdus_tiamatea_SARL4B 1 1
Natronomonas_moolapensis_8.8.11 1 1
Haloarcula_hispanica_N601 1 1
Methanococcus_maripaludis_X1 1 1
Methanococcus_maripaludis_C6 1 1
Methanococcus_maripaludis_C7 1 1
Methanococcus_maripaludis_S2 1 1
Methanobacterium_sp._SWAN-1 1 1

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Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   1 1
Pan_troglodytes_69_2.1.4   (Chimpanzee)   1 1
Gorilla_gorilla_69_3.1   (Western gorilla)   1 1
Pongo_abelii_69_2   (Sumatran orangutan)   1 1
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   1 1
Macaca_mulatta_69_1   (Rhesus monkey)   2 2
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   1 1
Microcebus_murinus_69_1   (Gray mouse lemur)   1 1
Rattus_norvegicus_69_3.4   (Norway rat)   1 1
Mus_musculus_69_38   (House mouse)   1 1
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   1 1
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   1 1
Cavia_porcellus_69_3   (Domestic guinea pig)   1 1
Oryctolagus_cuniculus_69_2   (Rabbit)   1 1
Ochotona_princeps_69   (American pika)   1 1
Tupaia_belangeri_69   (Northern tree shrew)   2 1
Sus_scrofa_69_10.2   (Pig)   2 2
Bos_taurus_69_3.1   (Cattle)   1 1
Vicugna_pacos_69_1   (Alpaca)   1 1
Tursiops_truncatus_69_1   (Bottlenose dolphin)   1 1
Mustela_putorius_furo_69_1.0   (Domestic ferret)   1 1
Ailuropoda_melanoleuca_69_1   (Giant panda)   1 1
Canis_familiaris_69_3.1   (Dog)   1 1
Felis_catus_69   (Domestic cat)   2 1
Equus_caballus_69_2   (Horse)   2 2
Myotis_lucifugus_69_2.0   (Little brown bat)   1 1
Pteropus_vampyrus_69_1   (Large flying fox)   1 1
Sorex_araneus_69_1   (European shrew)   1 1
Erinaceus_europaeus_69   (Western European hedgehog)   1 1
Procavia_capensis_69_1   (Cape rock hyrax)   1 1
Loxodonta_africana_69_3   (African savanna elephant)   1 1
Echinops_telfairi_69   (Small Madagascar hedgehog)   1 1
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1 1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   1 1
Macropus_eugenii_69_1.0   (Tammar wallaby)   3 1
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   1 1
Ornithorhynchus_anatinus_69_5   (Platypus)   1 1
Petromyzon_marinus_69_7.0   (Sea lamprey)   1 1
Meleagris_gallopavo_69_2   (Turkey)   1 1
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   1 1
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   1 1
Anolis_carolinensis_69_2.0   (Green anole)   1 1
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   2 2
Latimeria_chalumnae_69_1   (Coelacanth)   1 1
Gadus_morhua_69_1   (Atlantic cod)   1 1
Takifugu_rubripes_69_4   (Torafugu)   1 1
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   1 1
Oryzias_latipes_69_1   (Japanese medaka)   1 1
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   1 1
Oreochromis_niloticus_69_1.0   (Nile tilapia)   1 1
Danio_rerio_69_9   (Zebrafish)   1 1
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_69   (Vase tunicate)   1 1
Drosophila_melanogaster_69_5   (Fruit fly)   1 1
Caenorhabditis_elegans_69_215   (Roundworm)   2 2
Saccharomyces_cerevisiae_69_4   (Baker's yeast)   1 1
Arabidopsis_thaliana_10   (Thale cress)   1 1

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   4 4
Homo_sapiens__(NCBI_version)   (Human)   1 1
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   1 1
Heliconius_numata__(Incomplete) 1 1
Loa_loa_v3.3_(Request)   (Eye worm)   1 1
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   3 3
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   1 1
Encephalitozoon_intestinalis__(endoparasite) 1 1
Encephalitozoon_cuniculi_(endoparasite) 1 1
Lotus_japonicus__(Early_assembly) 1 1
Malus_x_domestica_(Duplicate)   (Apple)   3 3
Ricinus_communis__(Early_assembly)   (Castor bean)   1 1
Nicotiana_benthamiana_0.4.4_(Early_draft) 3 3
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   1 1
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   1 1
Phoenix_dactylifera__(Early_draft)   (Date palm)   1 1
NCBI_plasmid_sequences_(Plasmids) 51 51
STRING_v9.0.5_(STRING) 392 390
PDB_chains_(SCOP_1.75)_(PDB) 6 6
Uniprot_2018_03_genome 8665 8626
NCBI_2017_08_genome 16157 16112
Protein_Data_Bank_(all_PDB_sequenc) 30 30
Core_Eukaryotic_Genes_458_(CEGMA) 6 6
TargetDB__(Targets) 17 17
Protozoadb_2010_08_(Protozoadb) 51 51
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 69 69
UniProt__viral_sequences_(Viral) 108 108
NCBI_viral_sequences_(Viral) 181 181

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