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Domain combinations for Colicin superfamily in groups of genomes

Network of domain occurrence in all genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Colicin domain in that genome.

Complete genomes
Genome     Number   Proteins
Pichia_membranifaciensv1.0 1 1
Naegleria_gruberi_ 1 1
Geobacillus_thermoglucosidasius_C56-YS93 1 1
Photorhabdus_asymbiotica 1 1
Proteus_mirabilis_HI4320 2 2
Erwinia_tasmaniensis_Et1/99 1 1
Erwinia_sp._Ejp617 1 1
Erwinia_pyrifoliae_Ep1/96 1 1
Erwinia_amylovora_ATCC_49946 1 1
Shigella_sonnei_Ss046 1 1
Enterobacter_sp._638 2 2
Citrobacter_rodentium_ICC168 1 1
Pseudomonas_fluorescens_SBW25 1 1
Pseudomonas_aeruginosa_UCBPP-PA14 1 1

Strains
Genome     Number   Proteins
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   4 2
Gloeobacter_kilaueensis_Gloeobacter_sp._JS 1 1
Geobacillus_sp._Y4.1MC1 1 1
Mannheimia_haemolytica_USMARC_2286 1 1
Mannheimia_haemolytica_M42548 1 1
Mannheimia_haemolytica_D174 1 1
Mannheimia_haemolytica_D171 1 1
Mannheimia_haemolytica_D153 1 1
Mannheimia_haemolytica_USDA-ARS-USMARC-183 1 1
Mannheimia_haemolytica_USDA-ARS-USMARC-185 1 1
Morganella_morganii_subsp._morganii_KT 1 1
Rahnella_aquatilis_HX2 1 1
Serratia_plymuthica_S13 1 1
Serratia_plymuthica_4Rx13 1 1
Serratia_marcescens_WW4 1 1
Erwinia_pyrifoliae_DSM_12163 1 1
Erwinia_amylovora_CFBP1430 1 1
Shigella_sonnei_53G 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._ST4/74 1 1
Salmonella_enterica_subsp._enterica_serovar_Typhimurium_str._SL1344 1 1
Salmonella_enterica_subsp._enterica_Serovar_Heidelberg_str._CFSAN002069 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._41578 1 1
Salmonella_enterica_subsp._enterica_serovar_Heidelberg_str._SL476 1 1
Escherichia_coli_UMNK88 1 1
Escherichia_coli_S88 1 1
Escherichia_coli_SMS-3-5 1 1
Escherichia_coli_SE11 1 1
Escherichia_coli_O55:H7_str._RM12579 1 1
Escherichia_coli_O55:H7_str._CB9615 1 1
Pseudomonas_fluorescens_A506 1 1
Pseudomonas_aeruginosa_PAO1 1 1

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Others
Genome     Number   Proteins
NCBI_plasmid_sequences_(Plasmids) 57 57
PDB_chains_(SCOP_1.75)_(PDB) 4 4
Protein_Data_Bank_(all_PDB_sequenc) 7 7
STRING_v9.0.5_(STRING) 15 15
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 21 21
Uniprot_2018_03_genome 458 458
NCBI_2017_08_genome 5161 5161

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