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Domain combinations for Lipovitellin-phosvitin complex; beta-sheet shell regions superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a Lipovitellin-phosvitin complex; beta-sheet shell regions domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   14 10
Pan_troglodytes_76_2.1.4   (Chimpanzee)   3 2
Gorilla_gorilla_76_3.1   (Western gorilla)   5 3
Pongo_abelii_76_2   (Sumatran orangutan)   3 2
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   3 2
Papio_anubis_76   (Olive baboon)   2 2
Macaca_mulatta_76_1   (Rhesus monkey)   3 2
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   6 4
Otolemur_garnettii_76_3   (Small-eared galago)   3 2
Microcebus_murinus_76_1   (Gray mouse lemur)   3 2
Rattus_norvegicus_76_5.0   (Norway rat)   5 3
Mus_musculus_76_38   (House mouse)   7 5
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   3 2
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   4 3
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   3 2
Cavia_porcellus_76_3   (Domestic guinea pig)   3 2
Oryctolagus_cuniculus_76_2   (Rabbit)   3 2
Ochotona_princeps_76   (American pika)   6 2
Tupaia_belangeri_76   (Northern tree shrew)   1 1
Sus_scrofa_76_10.2   (Pig)   7 5
Bos_taurus_76_3.1   (Cattle)   3 2
Ovis_aries_76_3.1   (Sheep)   5 4
Vicugna_pacos_76_1   (Alpaca)   4 2
Tursiops_truncatus_76_1   (Bottlenose dolphin)   3 2
Mustela_putorius_furo_76_1.0   (Domestic ferret)   4 3
Ailuropoda_melanoleuca_76_1   (Giant panda)   3 3
Canis_familiaris_76_3.1   (Dog)   3 2
Felis_catus_76_6.2   (Domestic cat)   3 2
Equus_caballus_76_2   (Horse)   9 6
Myotis_lucifugus_76_2.0   (Little brown bat)   3 2
Pteropus_vampyrus_76_1   (Large flying fox)   3 2
Sorex_araneus_76_1   (European shrew)   3 2
Erinaceus_europaeus_76   (Western European hedgehog)   2 1
Procavia_capensis_76_1   (Cape rock hyrax)   5 2
Loxodonta_africana_76_3   (African savanna elephant)   9 6
Echinops_telfairi_76   (Small Madagascar hedgehog)   4 2
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   5 3
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   3 2
Macropus_eugenii_76_1.0   (Tammar wallaby)   3 2
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   8 5
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   1 1
Ornithorhynchus_anatinus_76_5   (Platypus)   8 6
Saccoglossus_kowalevskii_v3.0 35 20
Petromyzon_marinus_76_7.0   (Sea lamprey)   3 3
Meleagris_gallopavo_76_2   (Turkey)   27 14
Gallus_gallus_76_4   (Chicken)   13 6
Anas_platyrhynchos_76_1.0   (Mallard)   10 5
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   10 5
Ficedula_albicollis_76_1.0   (Collared flycatcher)   16 7
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   10 6
Anolis_carolinensis_76_2.0   (Green anole)   13 7
Xenopus_laevis_   (African clawed frog)   32 18
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   13 6
Latimeria_chalumnae_76_1   (Coelacanth)   21 11
Lepisosteus_oculatus_76   (Spotted gar)   17 9
Gadus_morhua_76_1   (Atlantic cod)   53 23
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   26 11
Takifugu_rubripes_76_4   (Torafugu)   38 18
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   27 17
Oryzias_latipes_76_1   (Japanese medaka)   16 9
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   13 7
Poecilia_formosa_76   (Amazon molly)   7 4
Oreochromis_niloticus_76_1.0   (Nile tilapia)   16 8
Astyanax_mexicanus_76   (Mexican tetra)   17 10
Danio_rerio_76_9   (Zebrafish)   57 27
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_76   (Vase tunicate)   1 1
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   15 8
Adineta_vaga 3 3
Octopus_bimaculoides_280 17 12
Crassostrea_gigas_22   (Pacific oyster)   15 11
Lottia_gigantea_   (Owl limpet)   5 4
Helobdella_robusta_ 5 5
Capitella_sp._I_ 14 8
Danaus_plexippus_OGS1.0   (Monarch butterfly)   9 7
Heliconius_melpomene_   (Postman butterfly)   7 4
Bombyx_mori_   (Domestic silkworm)   7 6
Nasonia_vitripennis_   (Jewel wasp)   11 7
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   22 14
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   17 10
Linepithema_humile_v1.1   (Argentine ant)   17 10
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   16 9
Solenopsis_invicta_v.2.2.3   (Red fire ant)   15 9
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   18 12
Atta_cephalotes_v1.1 15 11
Camponotus_floridanus_v3.3   (Florida carpenter ant)   12 8
Lucilia_cuprina   (Australian sheep blowfly)   6 4
Drosophila_grimshawi_1.3 7 4
Drosophila_willistoni_1.3 7 4
Drosophila_pseudoobscura_2.13 7 4
Drosophila_persimilis_1.3 7 4
Drosophila_suzukii 6 4
Drosophila_yakuba_1.3 7 4
Drosophila_simulans_1.3 6 4
Drosophila_sechellia_1.3 7 4
Drosophila_melanogaster_76_5   (Fruit fly)   7 4
Drosophila_erecta_1.3 6 4
Drosophila_ananassae_1.3 9 6
Drosophila_virilis_1.2 7 4
Drosophila_mojavensis_1.3 7 4
Megaselia_scalaris_22 4 3
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   18 10
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   17 9
Anopheles_darlingi_22   (American malaria mosquito)   12 7
Anopheles_gambiae_49_3j   (African malaria mosquito)   13 7
Tribolium_castaneum_3.0   (Red flour beetle)   14 8
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   9 5
Acyrthosiphon_pisum_   (Pea aphid)   6 4
Rhodnius_prolixus_22 10 7
Daphnia_pulex_   (Common water flea)   35 23
Strigamia_maritima_22 9 5
Sarcoptes_scabiei 5 3
Tetranychus_urticae_   (Two-spotted spider mite)   15 10
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   21 12
Pristionchus_pacificus_ 16 9
Meloidogyne_incognita_   (Southern root-knot nematode)   10 6
Meloidogyne_hapla_ 5 5
Onchocerca_volvulus_22 2 1
Caenorhabditis_japonica_ 12 6
Caenorhabditis_brenneri_ 11 7
Caenorhabditis_remanei_ 17 11
Caenorhabditis_elegans_76_235   (Roundworm)   17 9
Caenorhabditis_briggsae_2 11 6
Trichinella_spiralis_22 2 2
Hymenolepis_microstoma_ 2 1
Echinococcus_multilocularis_ 2 1
Echinococcus_granulosus_ 2 1
Taenia_solium_   (Pork tapeworm)   2 1
Schistosoma_mansoni_ 1 1
Acropora_digitifera_v1.0 9 7
Nematostella_vectensis_1.0   (Starlet sea anemone)   6 5
Hydra_vulgaris 4 3
Amphimedon_queenslandica 1 1
Trichoplax_adhaerens_ 5 4
Aspergillus_brasiliensis_v1.0 1 1
Spizellomyces_punctatus_DAOM_BR117_ 1 1
Naegleria_gruberi_ 1 1
Herpetosiphon_aurantiacus_DSM_785 3 3

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   12 6
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   7 4
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   13 8
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   6 4
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   17 9

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   3 2
Pan_troglodytes_69_2.1.4   (Chimpanzee)   3 2
Gorilla_gorilla_69_3.1   (Western gorilla)   3 2
Pongo_abelii_69_2   (Sumatran orangutan)   3 2
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   3 2
Macaca_mulatta_69_1   (Rhesus monkey)   3 2
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   3 2
Otolemur_garnettii_69_3   (Small-eared galago)   3 2
Microcebus_murinus_69_1   (Gray mouse lemur)   3 2
Rattus_norvegicus_69_3.4   (Norway rat)   3 2
Mus_musculus_69_38   (House mouse)   3 2
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   3 2
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   3 2
Cavia_porcellus_69_3   (Domestic guinea pig)   3 2
Oryctolagus_cuniculus_69_2   (Rabbit)   3 2
Ochotona_princeps_69   (American pika)   6 2
Tupaia_belangeri_69   (Northern tree shrew)   1 1
Sus_scrofa_69_10.2   (Pig)   5 4
Bos_taurus_69_3.1   (Cattle)   3 2
Vicugna_pacos_69_1   (Alpaca)   4 2
Tursiops_truncatus_69_1   (Bottlenose dolphin)   3 2
Mustela_putorius_furo_69_1.0   (Domestic ferret)   4 3
Ailuropoda_melanoleuca_69_1   (Giant panda)   3 3
Canis_familiaris_69_3.1   (Dog)   3 2
Equus_caballus_69_2   (Horse)   4 3
Myotis_lucifugus_69_2.0   (Little brown bat)   3 2
Pteropus_vampyrus_69_1   (Large flying fox)   3 2
Sorex_araneus_69_1   (European shrew)   3 2
Erinaceus_europaeus_69   (Western European hedgehog)   2 1
Procavia_capensis_69_1   (Cape rock hyrax)   5 2
Loxodonta_africana_69_3   (African savanna elephant)   3 2
Echinops_telfairi_69   (Small Madagascar hedgehog)   4 2
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   1 1
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   3 2
Macropus_eugenii_69_1.0   (Tammar wallaby)   3 2
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   8 5
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   1 1
Ornithorhynchus_anatinus_69_5   (Platypus)   8 6
Petromyzon_marinus_69_7.0   (Sea lamprey)   3 3
Meleagris_gallopavo_69_2   (Turkey)   13 6
Gallus_gallus_69_2   (Chicken)   17 8
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   10 5
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   9 5
Anolis_carolinensis_69_2.0   (Green anole)   11 6
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   13 6
Latimeria_chalumnae_69_1   (Coelacanth)   15 8
Gadus_morhua_69_1   (Atlantic cod)   16 8
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   11 6
Takifugu_rubripes_69_4   (Torafugu)   11 5
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   14 8
Oryzias_latipes_69_1   (Japanese medaka)   16 9
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   13 7
Oreochromis_niloticus_69_1.0   (Nile tilapia)   15 7
Danio_rerio_69_9   (Zebrafish)   34 14
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   1 1
Ciona_intestinalis_69   (Vase tunicate)   1 1
Drosophila_melanogaster_69_5   (Fruit fly)   7 4
Caenorhabditis_elegans_69_215   (Roundworm)   12 6

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   11 8
Homo_sapiens__(NCBI_version)   (Human)   3 2
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   3 2
Heliconius_numata__(Incomplete) 2 2
Loa_loa_v3.3_(Request)   (Eye worm)   2 1
NCBI_plasmid_sequences_(Plasmids) 1 1
PDB_chains_(SCOP_1.75)_(PDB) 3 2
Uniprot_2018_03_genome 6908 4241
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 10 10
Protein_Data_Bank_(all_PDB_sequenc) 3 2
TargetDB__(Targets) 8 5
STRING_v9.0.5_(STRING) 474 277
NCBI_2017_08_genome 4767 2789

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