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Domain combinations for EGF/Laminin superfamily in groups of genomes

Domain combinations in groups of genomes

Click on a group of genomes below to view all sequences containing the chosen domain combination in that group of genomes.

Groups of genomes may be slower than individual genomes.


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Domain combinations in individual genomes

Click on a genome below to view all domain combinations containing a EGF/Laminin domain in that genome.

Complete genomes
Genome     Number   Proteins
Homo_sapiens_76_38   (Human)   1736 621
Pan_troglodytes_76_2.1.4   (Chimpanzee)   532 163
Gorilla_gorilla_76_3.1   (Western gorilla)   876 233
Pongo_abelii_76_2   (Sumatran orangutan)   539 174
Nomascus_leucogenys_76_1.0   (Northern white-cheeked gibbon)   555 171
Papio_anubis_76   (Olive baboon)   634 191
Macaca_mulatta_76_1   (Rhesus monkey)   925 318
Callithrix_jacchus_76_3.2.1   (White-tufted-ear marmoset)   1183 386
Otolemur_garnettii_76_3   (Small-eared galago)   551 171
Microcebus_murinus_76_1   (Gray mouse lemur)   455 139
Rattus_norvegicus_76_5.0   (Norway rat)   613 207
Mus_musculus_76_38   (House mouse)   1015 344
Dipodomys_ordii_76_1   (Ord's kangaroo rat)   515 145
Ictidomys_tridecemlineatus_76_2   (Thirteen-lined ground squirrel)   529 164
Heterocephalus_glaber_v1.7-2   (Naked mole-rat)   521 161
Cavia_porcellus_76_3   (Domestic guinea pig)   580 173
Oryctolagus_cuniculus_76_2   (Rabbit)   478 160
Ochotona_princeps_76   (American pika)   469 142
Tupaia_belangeri_76   (Northern tree shrew)   407 132
Sus_scrofa_76_10.2   (Pig)   585 211
Bos_taurus_76_3.1   (Cattle)   632 189
Ovis_aries_76_3.1   (Sheep)   602 193
Vicugna_pacos_76_1   (Alpaca)   260 102
Tursiops_truncatus_76_1   (Bottlenose dolphin)   526 156
Mustela_putorius_furo_76_1.0   (Domestic ferret)   583 186
Ailuropoda_melanoleuca_76_1   (Giant panda)   634 192
Canis_familiaris_76_3.1   (Dog)   761 226
Felis_catus_76_6.2   (Domestic cat)   592 185
Equus_caballus_76_2   (Horse)   806 230
Myotis_lucifugus_76_2.0   (Little brown bat)   502 169
Pteropus_vampyrus_76_1   (Large flying fox)   529 164
Sorex_araneus_76_1   (European shrew)   286 102
Erinaceus_europaeus_76   (Western European hedgehog)   383 118
Procavia_capensis_76_1   (Cape rock hyrax)   460 149
Loxodonta_africana_76_3   (African savanna elephant)   690 216
Echinops_telfairi_76   (Small Madagascar hedgehog)   391 135
Dasypus_novemcinctus_76_2   (Nine-banded armadillo)   616 199
Choloepus_hoffmanni_76_1   (Hoffmann's two-fingered sloth)   271 99
Macropus_eugenii_76_1.0   (Tammar wallaby)   454 139
Sarcophilus_harrisii_76_7.0   (Tasmanian devil)   621 199
Monodelphis_domestica_76_5   (Gray short-tailed opossum)   616 176
Ornithorhynchus_anatinus_76_5   (Platypus)   511 184
Saccoglossus_kowalevskii_v3.0 3261 466
Petromyzon_marinus_76_7.0   (Sea lamprey)   221 94
Meleagris_gallopavo_76_2   (Turkey)   509 175
Gallus_gallus_76_4   (Chicken)   523 155
Anas_platyrhynchos_76_1.0   (Mallard)   519 172
Taeniopygia_guttata_76_3.2.4   (Zebra finch)   513 170
Ficedula_albicollis_76_1.0   (Collared flycatcher)   533 157
Pelodiscus_sinensis_76_1.0   (Chinese soft-shelled turtle)   592 196
Anolis_carolinensis_76_2.0   (Green anole)   539 160
Xenopus_laevis_   (African clawed frog)   514 207
Xenopus_tropicalis_76_4.2   (Tropical clawed frog)   694 186
Latimeria_chalumnae_76_1   (Coelacanth)   738 218
Lepisosteus_oculatus_76   (Spotted gar)   888 241
Gadus_morhua_76_1   (Atlantic cod)   618 198
Tetraodon_nigroviridis_76_8   (Spotted green pufferfish)   995 299
Takifugu_rubripes_76_4   (Torafugu)   2323 723
Gasterosteus_aculeatus_76_1   (Three-spined stickleback)   771 242
Oryzias_latipes_76_1   (Japanese medaka)   740 228
Xiphophorus_maculatus_76_4.4.2   (Southern platyfish)   627 196
Poecilia_formosa_76   (Amazon molly)   687 203
Oreochromis_niloticus_76_1.0   (Nile tilapia)   1051 282
Astyanax_mexicanus_76   (Mexican tetra)   752 239
Danio_rerio_76_9   (Zebrafish)   1139 389
Oikopleura_dioica 459 149
Ciona_savignyi_76_2.0   (Pacific transparent sea squirt)   1671 332
Ciona_intestinalis_76   (Vase tunicate)   438 155
Strongylocentrotus_purpuratus_v3.1   (Purple sea urchin)   2661 612
Adineta_vaga 1146 278
Octopus_bimaculoides_280 748 217
Crassostrea_gigas_22   (Pacific oyster)   874 287
Lottia_gigantea_   (Owl limpet)   627 164
Helobdella_robusta_ 407 130
Capitella_sp._I_ 916 309
Danaus_plexippus_OGS1.0   (Monarch butterfly)   197 52
Heliconius_melpomene_   (Postman butterfly)   184 46
Bombyx_mori_   (Domestic silkworm)   149 65
Nasonia_vitripennis_   (Jewel wasp)   168 39
Apis_mellifera_38.2d_(Not_maintained)   (Honey bee)   745 159
Harpegnathos_saltator_v3.3   (Jerdon's jumping ant)   213 49
Linepithema_humile_v1.1   (Argentine ant)   160 66
Pogonomyrmex_barbatus_v1.2   (Red harvester ant)   182 59
Solenopsis_invicta_v.2.2.3   (Red fire ant)   111 54
Acromyrmex_echinatior_v3.8   (Panamanian leafcutter ant)   220 46
Atta_cephalotes_v1.1 189 65
Camponotus_floridanus_v3.3   (Florida carpenter ant)   206 46
Lucilia_cuprina   (Australian sheep blowfly)   189 47
Drosophila_grimshawi_1.3 235 55
Drosophila_willistoni_1.3 203 47
Drosophila_pseudoobscura_2.13 219 52
Drosophila_persimilis_1.3 189 52
Drosophila_suzukii 233 53
Drosophila_yakuba_1.3 214 47
Drosophila_simulans_1.3 145 43
Drosophila_sechellia_1.3 187 41
Drosophila_melanogaster_76_5   (Fruit fly)   696 152
Drosophila_erecta_1.3 215 44
Drosophila_ananassae_1.3 210 48
Drosophila_virilis_1.2 216 49
Drosophila_mojavensis_1.3 212 46
Megaselia_scalaris_22 77 32
Aedes_aegypti_55_(Not_maintained)   (Yellow fever mosquito)   222 54
Culex_pipiens_quinquefasciatus_   (Southern house mosquito)   204 55
Anopheles_darlingi_22   (American malaria mosquito)   125 29
Anopheles_gambiae_49_3j   (African malaria mosquito)   196 51
Tribolium_castaneum_3.0   (Red flour beetle)   229 58
Pediculus_humanus_corporis__(Early_assembly)   (Human body louse)   220 55
Acyrthosiphon_pisum_   (Pea aphid)   185 35
Rhodnius_prolixus_22 183 44
Daphnia_pulex_   (Common water flea)   256 74
Strigamia_maritima_22 230 60
Sarcoptes_scabiei 166 48
Tetranychus_urticae_   (Two-spotted spider mite)   224 64
Ixodes_scapularis__(Preliminary)   (Black-legged tick)   156 55
Pristionchus_pacificus_ 229 96
Meloidogyne_incognita_   (Southern root-knot nematode)   119 42
Meloidogyne_hapla_ 76 37
Onchocerca_volvulus_22 185 53
Brugia_malayi_WS250   (Agent of lymphatic filariasis)   433 107
Caenorhabditis_japonica_ 193 64
Caenorhabditis_brenneri_ 302 105
Caenorhabditis_remanei_ 276 100
Caenorhabditis_elegans_76_235   (Roundworm)   528 152
Caenorhabditis_briggsae_2 242 82
Trichinella_spiralis_22 313 92
Hymenolepis_microstoma_ 122 36
Echinococcus_multilocularis_ 133 38
Echinococcus_granulosus_ 126 38
Taenia_solium_   (Pork tapeworm)   127 41
Schistosoma_mansoni_ 123 45
Mnemiopsis_leidyi   (Sea walnut)   178 50
Thelohanellus_kitauei 26 25
Acropora_digitifera_v1.0 831 347
Nematostella_vectensis_1.0   (Starlet sea anemone)   1039 372
Hydra_vulgaris 350 115
Amphimedon_queenslandica 433 151
Trichoplax_adhaerens_ 574 125
Proterospongia_sp._ATCC_50818_ 129 59
Monosiga_brevicollis_ 53 30
Sphaeroforma_arctica_JP610_ 120 34
Capsaspora_owczarzaki_ATCC_30864_ 28 22
Amorphotheca_resinae_v1.0   (Creosote fungus)   1 1
Didymella_exigua_CBS_183.55_v1.0 1 1
Trichophyton_verrucosum_HKI_0517_ 1 1
Arthroderma_benhamiae_CBS_112371_ 1 1
Trichophyton_tonsurans_CBS_112818_ 1 1
Trichophyton_rubrum_CBS_118892_ 1 1
Penicillium_chrysogenum_Wisconsin_54-1255_ 1 1
Penicillium_chrysogenum_v1.0 1 1
Aspergillus_terreus_NIH2624_ 1 1
Aspergillus_flavus_NRRL3357_ 1 1
Yarrowia_lipolytica_CLIB122 1 1
Spizellomyces_punctatus_DAOM_BR117_ 1 1
Dictyostelium_discoideum 19 9
Dictyostelium_purpureum_ 9 6
Pinus_taeda   (Loblolly pine)   1 1
Picea_abies   (Norway spruce)   1 1
Eucalyptus_grandis_v201   (Rose gum)   17 17
Theobroma_cacao_B97-61/B2_v1   (Cacao)   6 6
Gossypium_raimondii_v221 17 17
Citrus_clementina_v165 4 4
Citrus_sinensis_v154   (Sweet orange)   10 10
Thellungiella_halophila_v173 3 3
Brassica_rapa_Chiifu-401_1.2   (Field mustard)   11 11
Capsella_rubella_v183 6 6
Arabidopsis_lyrata_   (Lyrate rockcress)   4 4
Arabidopsis_thaliana_10   (Thale cress)   5 5
Carica_papaya_   (Papaya)   4 4
Medicago_truncatula_   (Barrel medic)   18 18
Phaseolus_vulgaris_v186   (French bean)   8 8
Glycine_max_v109   (Soybean)   12 12
Cucumis_sativus_v122   (Cucumber)   6 5
Fragaria_vesca_   (Wild strawberry)   15 13
Malus_domestica_v196   (Apple)   25 25
Prunus_persica_v139   (Peach)   11 11
Linum_usitatissimum_v200   (Flax)   1 1
Populus_trichocarpa_v156   (Black cottonwood)   10 10
Vitis_vinifera_   (Wine grape)   19 12
Mimulus_guttatus_v140   (Spotted monkey flower)   2 2
Solanum_lycopersicum_v.2.3   (Tomato)   6 6
Solanum_tuberosum_   (Potato)   20 20
Actinidia_chinensis_Hongyang_ 5 5
Aquilegia_coerulea_v195 14 14
Triticum_urartu_22 42 42
Triticum_aestivum_22   (Bread wheat)   122 122
Aegilops_tauschii_22 64 64
Brachypodium_distachyon_   (Stiff brome)   26 25
Oryza_barthii_22   (African wild rice)   59 49
Oryza_meridionalis_22 53 44
Oryza_glumaepatula_22 66 64
Oryza_glaberrima   (African rice)   31 31
Oryza_punctata_22 44 41
Oryza_nivara_22 56 52
Oryza_brachyantha_22   (Malo sina)   38 38
Oryza_sativa_ssp._japonica_5.0   (Japanese rice)   50 49
Oryza_sativa_v193   (Rice)   51 50
Phyllostachys_heterocyclavar._pubescens   (Kikko-chiku)   16 16
Panicum_virgatum_v202   (Switchgrass)   77 76
Setaria_italica_v164   (Foxtail millet)   40 40
Zea_mays_subsp._mays_   (Maize)   18 17
Zea_mays_v181   (Maize)   20 19
Sorghum_bicolor_   (Sorghum)   26 26
Musa_balbisiana   (Balbis banana)   14 13
Musa_acuminata_22   (Wild Malaysian banana)   29 26
Amborella_trichopoda_22 4 4
Physcomitrella_patens 2 2
Coccomyxa_subellipsoidea_sp._C-169_v2 4 4
Asterochloris_sp._Cgr/DA1pho_v1.0 2 2
Chlorella_variabilis_sp._NC64A_ 7 6
Chlorella_vulgaris_ 5 5
Volvox_carteri_f._nagariensis_ 2 2
Volvox_carteri_v199 1 1
Chlamydomonas_reinhardtii_4.0 5 5
Ostreococcus_lucimarinus_CCE9901_ 4 4
Ostreococcus_tauri_ 2 2
Bathycoccus_prasinos_ 4 4
Micromonas_sp._RCC299_ 3 2
Micromonas_pusilla_CCMP1545_v3.0 1 1
Thecamonas_trahens_ATCC_50062_ 1 1
Bigelowiella_natans_CCMP2755_22 18 12
Giardia_lamblia_2.3 26 14
Cyanophora_paradoxa_ 4 4
Ectocarpus_siliculosus 10 9
Albugo_laibachii_22 3 3
Pythium_iwayamai_DAOM_BR242034_22 4 4
Pythium_arrhenomanes_ATCC_12531_22 7 6
Pythium_ultimum_v1.7-2 2 2
Pythium_aphanidermatum_DAOM_BR444_22 5 4
Pythium_irregulare_DAOM_BR486_22 2 2
Pythium_vexans_DAOM_BR484_22 1 1
Phytophthora_ramorum_1.1   (Sudden oak death agent)   3 3
Phaeodactylum_tricornutumCCAP_1055/1 6 4
Fragilariopsis_cylindrus 14 10
Thalassiosira_pseudonana_CCMP1335 6 4
Perkinsus_marinus_ATCC_50983_ 3 3
Paramecium_tetraurelia_ 10 10
Tetrahymena_thermophila_SB210_1_ 4 4
Ichthyophthirius_multifiliis_strain_G5_ 1 1
Cryptosporidium_hominis 7 6
Cryptosporidium_muris 13 7
Cryptosporidium_parvum_Iowa_II 12 7
Neospora_caninum 12 7
Toxoplasma_gondii_VEG 12 6
Toxoplasma_gondii_ME49 14 8
Toxoplasma_gondii_GT1 8 5
Babesia_bovis_T2Bo_ 4 2
Theileria_parva__ 1 1
Plasmodium_falciparum_3D7_ 10 7
Plasmodium_vivax_SaI-1_7.0 12 8
Plasmodium_knowlesi_strain_H_ 13 9
Plasmodium_yoelii_ssp._yoelii_1_ 8 5
Plasmodium_chabaudi_ 9 6
Plasmodium_berghei_ANKA_ 10 6
Symbiodinium_minutum_clade_B1_v1.2 10 7
Naegleria_gruberi_ 15 13
Guillardia_theta_CCMP2712_v1.0_ 24 18
Emiliania_huxleyi_CCMP1516_ 3 3
Haliscomenobacter_hydrossis_DSM_1100 1 1
Odoribacter_splanchnicus_DSM_20712 1 1
Haliangium_ochraceum_DSM_14365 1 1
Stigmatella_aurantiaca_DW4/3-1 1 1
Myxococcus_xanthus_DK_1622 1 1
Myxococcus_fulvus_HW-1 1 1

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Strains
Genome     Number   Proteins
Xenopus_(Silurana)_tropicalis_v7.1_(annotation_v7.2)   (Tropical clawed frog)   774 252
Drosophila_melanogaster_FlyBase_5.12_(FlyBase)   (Fruit fly)   393 99
Anopheles_gambiae_VectorBase_AgamP3.6__(VectorBase)   (African malaria mosquito)   218 56
Ascaris_suum_Victoria/Ghent_   (Pig roundworm)   227 76
Caenorhabditis_elegans_WormBase_WS218__(WormBase)   (Roundworm)   360 114
Theobroma_cacao_Matina_1-6_v0.9   (Cacao)   6 6
Hordeum_vulgare_22   (Domesticated barley)   56 56
Oryza_sativa_ssp._Indica_(Subspecies)   (Long-grained rice)   42 42
Neospora_caninum_Nc-Liverpool_6.2 12 7
Plasmodium_falciparum_HB3_ 9 6
Plasmodium_falciparum_Dd2_ 6 4
Myxococcus_stipitatus_DSM_14675 2 2

Longest transcript per gene
Genome     Number   Proteins
Homo_sapiens_69_37   (Human)   710 195
Pan_troglodytes_69_2.1.4   (Chimpanzee)   517 157
Gorilla_gorilla_69_3.1   (Western gorilla)   571 161
Pongo_abelii_69_2   (Sumatran orangutan)   519 168
Nomascus_leucogenys_69_1.0   (Northern white-cheeked gibbon)   495 156
Macaca_mulatta_69_1   (Rhesus monkey)   556 172
Callithrix_jacchus_69_3.2.1   (White-tufted-ear marmoset)   578 165
Otolemur_garnettii_69_3   (Small-eared galago)   549 170
Microcebus_murinus_69_1   (Gray mouse lemur)   455 139
Rattus_norvegicus_69_3.4   (Norway rat)   574 173
Mus_musculus_69_38   (House mouse)   554 169
Dipodomys_ordii_69_1   (Ord's kangaroo rat)   513 143
Ictidomys_tridecemlineatus_69_2   (Thirteen-lined ground squirrel)   502 156
Cavia_porcellus_69_3   (Domestic guinea pig)   558 163
Oryctolagus_cuniculus_69_2   (Rabbit)   463 150
Ochotona_princeps_69   (American pika)   469 142
Tupaia_belangeri_69   (Northern tree shrew)   407 132
Sus_scrofa_69_10.2   (Pig)   467 164
Bos_taurus_69_3.1   (Cattle)   558 165
Vicugna_pacos_69_1   (Alpaca)   260 102
Tursiops_truncatus_69_1   (Bottlenose dolphin)   526 156
Mustela_putorius_furo_69_1.0   (Domestic ferret)   565 183
Ailuropoda_melanoleuca_69_1   (Giant panda)   551 166
Canis_familiaris_69_3.1   (Dog)   552 165
Felis_catus_69   (Domestic cat)   380 133
Equus_caballus_69_2   (Horse)   546 178
Myotis_lucifugus_69_2.0   (Little brown bat)   472 160
Pteropus_vampyrus_69_1   (Large flying fox)   525 162
Sorex_araneus_69_1   (European shrew)   286 102
Erinaceus_europaeus_69   (Western European hedgehog)   383 118
Procavia_capensis_69_1   (Cape rock hyrax)   458 148
Loxodonta_africana_69_3   (African savanna elephant)   526 165
Echinops_telfairi_69   (Small Madagascar hedgehog)   391 135
Dasypus_novemcinctus_69_2   (Nine-banded armadillo)   322 125
Choloepus_hoffmanni_69_1   (Hoffmann's two-fingered sloth)   267 97
Macropus_eugenii_69_1.0   (Tammar wallaby)   454 139
Sarcophilus_harrisii_69_7.0   (Tasmanian devil)   491 158
Monodelphis_domestica_69_5   (Gray short-tailed opossum)   567 166
Ornithorhynchus_anatinus_69_5   (Platypus)   452 168
Petromyzon_marinus_69_7.0   (Sea lamprey)   203 84
Meleagris_gallopavo_69_2   (Turkey)   471 152
Gallus_gallus_69_2   (Chicken)   516 150
Taeniopygia_guttata_69_3.2.4   (Zebra finch)   494 162
Pelodiscus_sinensis_69_1.0   (Chinese soft-shelled turtle)   497 161
Anolis_carolinensis_69_2.0   (Green anole)   510 157
Xenopus_tropicalis_69_4.2   (Tropical clawed frog)   553 156
Latimeria_chalumnae_69_1   (Coelacanth)   639 183
Gadus_morhua_69_1   (Atlantic cod)   547 170
Tetraodon_nigroviridis_69_8   (Spotted green pufferfish)   693 221
Takifugu_rubripes_69_4   (Torafugu)   677 202
Gasterosteus_aculeatus_69_1   (Three-spined stickleback)   659 191
Oryzias_latipes_69_1   (Japanese medaka)   656 187
Xiphophorus_maculatus_69_4.4.2   (Southern platyfish)   627 196
Oreochromis_niloticus_69_1.0   (Nile tilapia)   749 202
Danio_rerio_69_9   (Zebrafish)   769 240
Ciona_savignyi_69_2.0   (Pacific transparent sea squirt)   523 112
Ciona_intestinalis_69   (Vase tunicate)   408 143
Drosophila_melanogaster_69_5   (Fruit fly)   218 50
Caenorhabditis_elegans_69_215   (Roundworm)   241 74
Arabidopsis_thaliana_10   (Thale cress)   5 5

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Others
Genome     Number   Proteins
Homo_sapiens_75_37_(old_version_GRC)   (Human)   1814 677
Homo_sapiens__(NCBI_version)   (Human)   877 288
Mus_musculus_63_37__(longest_transcript_per_gene)_(Duplicate)   (House mouse)   556 169
Heliconius_numata__(Incomplete) 14 9
Loa_loa_v3.3_(Request)   (Eye worm)   185 61
Wuchereria_bancrofti_v1.0_(Request)   (Agent of lymphatic filariasis)   186 80
Brugia_malayi_v1.0_(Duplicate)   (Agent of lymphatic filariasis)   169 51
Picea_sitchensis__(Incomplete)   (Sitka spruce)   1 1
Lotus_japonicus__(Early_assembly) 3 3
Malus_x_domestica_(Duplicate)   (Apple)   25 25
Ricinus_communis__(Early_assembly)   (Castor bean)   5 5
Nicotiana_benthamiana_0.4.4_(Early_draft) 4 4
Solanum_pimpinellifolium_A-1.0_(Early_draft)   (Currant tomato)   6 6
Solanum_lycopersicum_v2.3_(Early_assembly)   (Tomato)   6 6
Phoenix_dactylifera__(Early_draft)   (Date palm)   4 4
SCOP2_SCOPe_CATH_ECOD_(all_domain_sequ) 2437 2434
NCBI_viral_sequences_(Viral) 27 26
STRING_v9.0.5_(STRING) 25827 7909
TargetDB__(Targets) 486 191
Uniprot_2018_03_genome 214533 69342
NCBI_2017_08_genome 302166 90591
Protozoadb_2010_08_(Protozoadb) 242 149
UniProt__viral_sequences_(Viral) 82 69
Protein_Data_Bank_(all_PDB_sequenc) 1179 857
PDB_chains_(SCOP_1.75)_(PDB) 117 88

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